Citrus Sinensis ID: 043190
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1492 | 2.2.26 [Sep-21-2011] | |||||||
| E9PZJ8 | 2198 | Activating signal cointeg | yes | no | 0.990 | 0.672 | 0.531 | 0.0 | |
| Q8N3C0 | 2202 | Activating signal cointeg | yes | no | 0.993 | 0.673 | 0.530 | 0.0 | |
| E1BNG3 | 2201 | Activating signal cointeg | yes | no | 0.996 | 0.675 | 0.529 | 0.0 | |
| F1NTD6 | 2211 | Activating signal cointeg | yes | no | 0.990 | 0.668 | 0.531 | 0.0 | |
| F1LPQ2 | 2197 | Activating signal cointeg | yes | no | 0.989 | 0.672 | 0.520 | 0.0 | |
| Q54G57 | 2195 | Activating signal cointeg | yes | no | 0.985 | 0.670 | 0.497 | 0.0 | |
| E7F8F4 | 1534 | Activating signal cointeg | yes | no | 0.837 | 0.814 | 0.536 | 0.0 | |
| O60072 | 1935 | Putative helicase mug81 O | yes | no | 0.972 | 0.749 | 0.474 | 0.0 | |
| O75643 | 2136 | U5 small nuclear ribonucl | no | no | 0.993 | 0.693 | 0.441 | 0.0 | |
| P53327 | 1967 | Antiviral helicase SLH1 O | yes | no | 0.955 | 0.724 | 0.452 | 0.0 |
| >sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1656 bits (4288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 821/1546 (53%), Positives = 1071/1546 (69%), Gaps = 68/1546 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++GI N
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKM 695
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGP 755
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH VVIKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 816 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYG 935
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + L+ + + LDKAKM+RF+E++G F T+LGR ASHFYI+Y++
Sbjct: 936 ISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNT 995
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1116 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1174
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L I P+F+W D HG + WWI V+D +DHIY
Sbjct: 1175 QCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1235 HSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1294
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1295 ERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1355 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTP 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +R+YV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1415 DMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1475 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1535 YCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1594
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1595 QEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1654
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1655 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1714
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1715 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYSLG 1774
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L+ + +LE S C+++ ED T+EP G IAS YYL + TV MF
Sbjct: 1775 DVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMFK 1834
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + ++ + D PH KA+L
Sbjct: 1835 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHL 1894
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL + + HL+QMV+QG
Sbjct: 1895 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQG 1954
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDI--PKENLQTVIGN 1361
W +DS+L P + L R A+ ++++ L ++ E V +
Sbjct: 1955 RWL-KDSSLLTIPNIEQHHLHLFRKWKPPVKSSHAKCRTSIECLPELIHACEGKDHVFSS 2013
Query: 1362 FPVSRLHQD--------LQRFPRIQVKLRLQRR---DIDGENSLTLN-IRMDKM--NSW- 1406
L L R P I V + ++ ++G N L+++ + DK N W
Sbjct: 2014 MVEKELQPAKTKQAWNFLSRLPVINVGISVKGSWDDLVEGHNELSISTLTADKRDENKWI 2073
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K+ + A RFPK+KDE W+L+LG + EL A+KR
Sbjct: 2074 KLHADQEYVLQVSLQRVHFGLPKGKHENHAVTPRFPKLKDEGWFLILGEVDKRELMAVKR 2133
Query: 1443 ISFSDRLNTHMELPSGITTFQG-----MKLVVVSDCYLGFEQEHSI 1483
+ F + TH + T + L ++SDCYLG +Q++ I
Sbjct: 2134 VGF---VRTHHDASISFFTPETPGRYIFTLYLMSDCYLGLDQQYDI 2176
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3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Mus musculus (taxid: 10090) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1652 bits (4278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1556 (53%), Positives = 1075/1556 (69%), Gaps = 74/1556 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLFFFD +RP+PL Q ++GI N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKM 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F
Sbjct: 695 QQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGH 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
L +K V +SRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 DYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT + PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 875 HYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+TL+ C + GG N +
Sbjct: 995 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWASPLRQFSI-LPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I +FTW D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ +++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 REMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L++ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ AN GWL + + +L+QMV+QG
Sbjct: 1894 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDIPKE--NLQTVIGN 1361
W +DS+L P + N L + ARG ++++ L ++ V +
Sbjct: 1954 RWL-KDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDHVFSS 2012
Query: 1362 FPVSRLHQD--------LQRFPRIQVKLRLQRR---DIDGENSLTLN-IRMDKM--NSW- 1406
S LH L P I V + ++ ++G N L+++ + DK N W
Sbjct: 2013 MVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWI 2072
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K S A RFPK KDE W+L+LG + EL ALKR
Sbjct: 2073 KLHADQEYVLQVSLQRVHFGFHKGKPESCAVTPRFPKSKDEGWFLILGEVDKRELIALKR 2132
Query: 1443 ISFSDRLNTHM--------ELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490
+ + N H+ E+P L +SDCYLG +Q++ I V Q+
Sbjct: 2133 VGYIR--NHHVASLSFYTPEIPGRYI----YTLYFMSDCYLGLDQQYDIYLNVTQA 2182
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1650 bits (4274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1555 (52%), Positives = 1074/1555 (69%), Gaps = 68/1555 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLFFFD +RP+PL Q ++GI N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQTFLGIKSANKV 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 695 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGP 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ +K V KSRN+ + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 EYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 875 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L+ + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H +S++ +VS + EF+ I VR+EE EL+TL+ C + GG N +
Sbjct: 995 IETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEVDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWTSPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I+P+F+W D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVTMEASIQPITRTVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLVLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYVK+V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKP + AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ + D NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWGV
Sbjct: 1594 REMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS LV+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 ERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL + + L+QMV+QG
Sbjct: 1894 LLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLRA-----RG--------ISTVQQLLD--IPKENL--Q 1356
W +DS+L P + N L R +G I + +L+ K+++
Sbjct: 1954 RWL-KDSSLLTIPHIENHHLHIFRKWSPGMKGPHAGYHGSIECLPELIHACAGKDHVFSS 2012
Query: 1357 TVIGNFPVSRLHQD---LQRFPRIQVKLRLQ---RRDIDGENSLTL-NIRMDKM--NSW- 1406
+ P ++ Q L P I V L ++ +G + +++ + DK N W
Sbjct: 2013 MIEKELPAPKMKQAWNFLSHLPVIDVGLSVKGWWDDAAEGHDEISITTVASDKHSDNRWV 2072
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K S A RFPK KDE W+L+LG + EL ALKR
Sbjct: 2073 RLHADQEYVLQVSLQRVSLGFHKGKQDSHAVTPRFPKSKDEGWFLILGEVDKRELIALKR 2132
Query: 1443 ISFSDRLNTHMELPSGITTFQG-----MKLVVVSDCYLGFEQEHSIEALVEQSVI 1492
+ + + +H + T + L +SDCYLG +Q++ I V + I
Sbjct: 2133 VGY---VRSHHMVSISFYTPEVPGRYIYTLYFMSDCYLGLDQQYDIHLHVTPASI 2184
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1641 bits (4250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1546 (53%), Positives = 1064/1546 (68%), Gaps = 68/1546 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FDS +RP+PL Q +IGI N
Sbjct: 644 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKV 703
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ + GHQ MVFVH+R TV+TA L + A+ + F +
Sbjct: 704 QQLNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGS 763
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+K V +SRNK L ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 764 DYGQAEKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAW 823
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH VVIKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 824 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 883
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 884 HYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 943
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP L + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 944 ISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNT 1003
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + +++ +VS + EFE I VR+EE EL+TL+ C + GG N +
Sbjct: 1004 IETFNELFDAHKTEGDILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNY 1063
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1064 GKINILLQTYISRGELDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1123
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP +L KLEE+ +D++++M + +IG ++ + G VK
Sbjct: 1124 VIDKRLWGWVSPLRQFSV-LPPSVLSKLEEKNLTVDKMKDMRKDEIGHMLHHVKIGLKVK 1182
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PSI + AT+ PITRTVL++ L ITP+FTW D HG + WWI V+D +DHIY
Sbjct: 1183 QCVHQIPSIAMEATIQPITRTVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1242
Query: 597 HSELFTLTKR-MARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F + K+ + E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1243 HSEYFIIQKKQVITKEPQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1302
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG+ YE LY F+HFNPIQTQIFH LYHTD NVLLGAPTGS
Sbjct: 1303 ERHPPHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGS 1362
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRER+ DWK R+ +LGK++VE+TGD TP
Sbjct: 1363 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDVTP 1422
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ A+ AD+I++TPEKWDG+SR+W +R+YV+KV ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1423 DMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRT 1482
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1483 NFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQH 1542
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM MNKPA+ AI +HSP KPVLIFVSSRRQTRLT+LDLI F A+++ P+Q+L M E
Sbjct: 1543 YCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDE 1602
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
++ ++ V D NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWGV
Sbjct: 1603 REMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1662
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVI+KGTEYYDGKT+RYVD+PITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1663 NFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1722
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL D L DH NAEI +GTI K+DA+ Y++WTY FRRL +NP YY L+
Sbjct: 1723 KKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLD 1782
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
+ + ++ YLS LV+ + DLE S C+++ ED T+EP G IAS YYL + T+ MF
Sbjct: 1783 NVSHDTMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFK 1842
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P++S+E L IL+ A EY +LPVRHNED N L++ + V+ + D H K +L
Sbjct: 1843 DQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIEVNPHSFDSSHTKTHL 1902
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAHFS LP DY TD K+VLDQ+IRI QAM+D+ A+ GWL +++ +L+QMV+QG
Sbjct: 1903 LLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQG 1962
Query: 1314 LWFEQDSA----------LWMFPCMNNDLLGTLRARGISTVQQLLDI-----PKENLQTV 1358
W S L++F + ++ ++ L ++ KE++
Sbjct: 1963 RWIHDSSLLTVPNIEVQHLYLFQKWSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFAS 2022
Query: 1359 IGNFPVSRLHQD-----LQRFPRIQVKLRLQ---------------------RRD----- 1387
I + + H L R P + V L ++ RD
Sbjct: 2023 IVDSELQTAHISQAWNFLSRLPILNVSLSIKGCWDDPAQPQNEVPVPCLTADTRDNKRWI 2082
Query: 1388 ---IDGENSLTLNIRMDKMN-SWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRI 1443
D E L ++++ +M K S+A A RFPK+KDE W+L+LG + EL ALKR
Sbjct: 2083 KLHADQEYVLQIHLQRTQMGYQGKQDSKAVAPRFPKVKDEGWFLILGEVDKKELIALKRT 2142
Query: 1444 SFSDRLNT------HMELPSGITTFQGMKLVVVSDCYLGFEQEHSI 1483
+ NT E P L ++SD YLG +Q++ I
Sbjct: 2143 GYVRNRNTVSVAFYTPETPGKCI----YTLYLMSDSYLGMDQQYDI 2184
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkhb3, enabling alkhb3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1625 bits (4209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1546 (52%), Positives = 1064/1546 (68%), Gaps = 69/1546 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++GI N
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKM 695
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGP 755
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 816 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYG 935
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + L+ + + LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 936 ISHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 995
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1116 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1174
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L I P+F+W D HG + WWI V+D +DHIY
Sbjct: 1175 QCVHQIPSVTMEASIQPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1235 HSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1294
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1295 ERHPPHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1355 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTP 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +R+YV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1415 DMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1475 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ TH P +P L+ + R + +T L+LI F A++E P+Q+L M E
Sbjct: 1535 YCPRMASMNKPAFQESHTHCPDRPCLL-LPERMLSSMTKLELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
++++ +++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 QEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSQDAINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + ++ + D PH KA+L
Sbjct: 1834 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL +++ HL+QMV+QG
Sbjct: 1894 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDI--PKENLQTVIGN 1361
W +DS+L P + L R A+ ++++ L ++ E + V +
Sbjct: 1954 RWL-KDSSLLTIPNIEQHHLHLFRKWKPPVKGPHAKCRTSIECLPELIHACEGKEHVFSS 2012
Query: 1362 FPVSRLHQD--------LQRFPRIQVKLRLQRR---DIDGENSLTLN-IRMDKM--NSW- 1406
L L P I V + ++ ++G N L+++ + DK N+W
Sbjct: 2013 MVEKELQPAKTKQAWNFLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDENTWI 2072
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K+ S A RFPK+KDE W+L+LG + EL A+KR
Sbjct: 2073 KLHADQQYVLQVSLQRVHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELVAVKR 2132
Query: 1443 ISFSDRLNTHMELPSGITTFQG-----MKLVVVSDCYLGFEQEHSI 1483
+ F + TH E T + L ++SDCYLG +Q++ I
Sbjct: 2133 VGF---VRTHHEASISFFTPEAPGRYIFTLYLMSDCYLGLDQQYDI 2175
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1539 (49%), Positives = 1049/1539 (68%), Gaps = 68/1539 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-- 58
VE+TQ MIRIVGLSATLPNY +VA+F+R P G FFDSSYRP+PL Q +IG+ +
Sbjct: 641 VETTQEMIRIVGLSATLPNYKDVARFIRA-PASGTHFFDSSYRPVPLTQNFIGVKDNQGI 699
Query: 59 FAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDT 118
+N + +++CY+++ SL++GHQ M+FVHSRKDTVK+A+ L D+A+ E F+N+
Sbjct: 700 MVMKNNM-NQLCYERLEKSLKEGHQVMIFVHSRKDTVKSAEILSDMAK--EKHFRFSNE- 755
Query: 119 HPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
P KK+ K ++K++ LF + VHHAG+LRSDR + E+ F+ G +KVLVCTATL
Sbjct: 756 EPSFGA-KKEFEKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATL 814
Query: 179 AWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDK 235
AWGVNLPAHTV+IKGTQ+Y+ K GG+ DLG+ D IFGRAGRPQFD SGEG ++TS DK
Sbjct: 815 AWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDK 874
Query: 236 LAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLA 295
L +YL L++S +PIES+FI++L+D+LNAE+ LGTV+NV EA WL YTYL IRM NPL
Sbjct: 875 LDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLV 934
Query: 296 YGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQY 355
YGI + DP L +R ++ AA+ L++ KM RFDE+S N TELGRIASH+YI++
Sbjct: 935 YGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQSENLGMTELGRIASHYYIKH 994
Query: 356 SSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSN 415
S+ET+NEML + +V+ ++S+SSEFENI +R+EE EL+ L + C E+ S
Sbjct: 995 PSIETFNEMLNDQLGQDQVLNILSNSSEFENITLREEESTELDKLAENQCYYELTVLDS- 1053
Query: 416 KHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEY 475
H K+ L+Q + SR ID FSLVSD+ Y + +RI+R LFE L++GWC +S +L+
Sbjct: 1054 -HSKVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSRILRGLFEISLKKGWCTVSKTILDL 1112
Query: 476 CKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRL 535
CK VD Q+W + PLRQ K L + +RK+EER +R+ +ME ++ ++ +
Sbjct: 1113 CKMVDHQLWHFESPLRQ-AKVLSLDTIRKIEERDWTPERICDMEIGELSFVLGNQLIAKT 1171
Query: 536 VKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHI 595
++ FP + V PIT +++I + + P F+W D HG +Q +WI VQD+ES +I
Sbjct: 1172 TRKIAQQFPQLDFEIQVQPITANIIRINMTLIPMFSWNDKMHGDSQPFWIWVQDNESQYI 1231
Query: 596 YHSELFTLTKRM-ARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
+HSE F LTK++ + E L+ +P+ P P Q+++ +SD WL +E ISF +L L
Sbjct: 1232 FHSEYFMLTKKIYNQTEPITLTCIIPLPNPMPSQFFLHYISDRWLGSEGIREISFRHLVL 1291
Query: 655 PQA-RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPT 713
PQ R +TELLDL+PLP AL N +E+L+ FSHFNPIQTQ+FH LY+T+NNVLLG+PT
Sbjct: 1292 PQQDRVVNTELLDLQPLPKEALKNKDFESLFKFSHFNPIQTQVFHTLYYTNNNVLLGSPT 1351
Query: 714 GSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDY 773
GSGKTI AELAM +F + MKVVYIAPLKA+VRERMNDWK + +LGK++VE+TGDY
Sbjct: 1352 GSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDY 1411
Query: 774 TPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833
TP+++AL +ADI+ +TPEKWDGISRNW +R+YV V L+I+DEIHL+G RGPILEVIVS
Sbjct: 1412 TPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVS 1471
Query: 834 RMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPG 893
RM+ IS QT +R +GLSTA+ANA DL++W+G+ +GLFNF+PS RPVP+EVHIQG+ G
Sbjct: 1472 RMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQG 1531
Query: 894 KFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM 953
K YCPRM +MNKP++AAI T+SP KPVLIFVSSRRQTRLTALDLI + D P Q++
Sbjct: 1532 KNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQWI-Q 1590
Query: 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013
D++ L++V DQ+LR TL FGIG+HHAGLND DR++VE LF NKIQ+L+ TSTLAW
Sbjct: 1591 KGFDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAW 1650
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
GVNLPAHLVIIKGTEY+DGKTKRYVDFP+TD+LQM+GRAGRPQ+D+ GKA+++VHEPKK
Sbjct: 1651 GVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQ 1710
Query: 1074 FYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133
FYKKFLY+PFPVES L+D LHDH NAEIVSGTI K+ A++YL T+ FRRL ++P+YYG
Sbjct: 1711 FYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYG 1770
Query: 1134 LEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE-DTVEPTMLGTIASQYYLSYVTVSMF 1192
LED E ++ YLS L+ +T DLE S C+++ E D + P +G IAS YYL+Y TV F
Sbjct: 1771 LEDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTVQNF 1830
Query: 1193 GSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKAN 1252
NI D+ ++ L +LS A+EY E PVRHNE+ N+ L++ + + N +D H K +
Sbjct: 1831 SDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGN--YEDSHTKVH 1888
Query: 1253 LLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQ 1312
LL QAHF R LPI+D+ TD KS LDQ IRI+QAMID+ G+ +++I + LLQM++Q
Sbjct: 1889 LLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQ 1948
Query: 1313 GLWFEQDSALWMFPCMNNDLLGTLRA-------RGISTVQQLLDIPKENLQTVIGNFPV- 1364
G W + DS+L P +N D L + IS + +L IP++ + + N +
Sbjct: 1949 GRW-DYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGLS 2007
Query: 1365 -SRLHQDLQ---RFPRIQVKLRL-------------------------------QRRDID 1389
S++ + L P+++++ + + +
Sbjct: 2008 DSQIKETLNVIDHLPKVKIEYFINTNNNSNNNDDNNNENNNNNNKKNNNNNNNNNKSIVY 2067
Query: 1390 GENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRIS--FSD 1447
+ I++ + N + AFA + K KDE W +VL + ++ KR+ S+
Sbjct: 2068 SGQEFNIKIKVTRENKKFSNGHAFAPLYSKDKDEGWIMVLTD-EKEQMIGFKRVPQMISN 2126
Query: 1448 RLNTHMELPSG-ITTFQGMKLVVVSDCYLGFEQEHSIEA 1485
+ + ++P + + + SD Y+G + H+ +
Sbjct: 2127 SVTANFKIPKAPFQSSTNYNVKLYSDTYMGLDYFHTFQV 2165
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio GN=ascc3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/1352 (53%), Positives = 942/1352 (69%), Gaps = 103/1352 (7%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FDS +RP+PL Q ++GI N
Sbjct: 233 VESTQSMIRILGLSATLPNYLDVATFLHVNPFIGLFYFDSRFRPVPLGQSFVGIKTTNKV 292
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+KV+ ++ GHQ MVFVH+R TV+TA L+++A+ +L F D
Sbjct: 293 QQLHDMEEVCYEKVLKQIKAGHQVMVFVHARNSTVRTAMSLIEMAKNRGELSFFQVDQGA 352
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+K + +SRNK + E+F G+HHAGMLR DR L E +FS G LKVLVCTATLAW
Sbjct: 353 DYGQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLMESMFSRGYLKVLVCTATLAW 412
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGT +YD K G DLG+LD IFGRAGRPQFD+ GEG IIT+HDKL+
Sbjct: 413 GVNLPAHAVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKLS 472
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF SL DNLNAE+ALGTVTNV EA WL YTYL +RM+ NPLAYG
Sbjct: 473 HYLTLLTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSYTYLYVRMRANPLAYG 532
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP L L ++ LV ++ R LDKA+M+RFDE++G F T+LGR ASHFYI+Y++
Sbjct: 533 INHKAYQMDPQLELYRKELVVESGRKLDKARMIRFDERTGYFASTDLGRTASHFYIKYNT 592
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR-DEEQNELETLVQTLCPVEVKGGPSNK 416
+E++NE+ +++V+ +VS + EFE I VR EE + ++ VQ LC +
Sbjct: 593 IESFNELFNAQNTEADVLSIVSKAEEFEQIKVRVQEEDADGKSSVQILC--------GSH 644
Query: 417 HGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYC 476
H + ARIMRALFE LR+ W M+ +L C
Sbjct: 645 H-----------------------------TNAARIMRALFEMALRKRWPAMTYRLLNLC 675
Query: 477 KAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLV 536
K +D+++W HPLRQF+ LPA L ++E++ +D+L++M + +IG ++ + G V
Sbjct: 676 KVMDKRLWGWAHPLRQFNT-LPASALARMEDKNLTIDKLRDMGKDEIGHMLHHVNIGLKV 734
Query: 537 KQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHI 595
KQ + P+I L +++ PITRTVL++ L+ITP+F W D HG+ + WW+ V+D +DHI
Sbjct: 735 KQCVHQIPAILLESSIQPITRTVLRVRLSITPDFRWNDQVHGSVGEPWWLWVEDPINDHI 794
Query: 596 YHSELFTLTKR-MARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
YHSE F L K+ + GE Q++ FT+PIFEP P QYYIRAVSD WL +EA I+F +L L
Sbjct: 795 YHSEYFLLQKKQVVSGEPQQVVFTIPIFEPMPSQYYIRAVSDRWLGSEAVCIINFQHLIL 854
Query: 655 PQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTG 714
P+ HTELLDL+PLP+TALGN YE+LY F+H+NPIQTQIFH LYHTD NVLLGAPTG
Sbjct: 855 PERHPPHTELLDLQPLPITALGNREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTG 914
Query: 715 SGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT 774
SGKTI+AE+A+ +FN KVVYIAPLKA+VRER+ DWK R+ +LG+++VE+TGD T
Sbjct: 915 SGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRKVVELTGDNT 974
Query: 775 PDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSR 834
PD+ A+ AD+I++TPEKWDG+SR+W +R+YV+KV ++I+DEIHLLG +RGP+LEVIVSR
Sbjct: 975 PDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVAILIIDEIHLLGEDRGPVLEVIVSR 1034
Query: 835 MRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK 894
+ISS T + VR +GLSTALANA DLADWLG+G++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1035 TNFISSHTSKTVRVVGLSTALANARDLADWLGIGQVGLFNFRPSVRPVPLEVHIQGFPGQ 1094
Query: 895 FYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954
YCPRM +MNKP + AI THSP KPVLIFVSSRRQTRLTALDLI F A+++ P+Q+L
Sbjct: 1095 HYCPRMATMNKPVFQAIRTHSPAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQWLHQD 1154
Query: 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014
E ++ +++ + + NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWG
Sbjct: 1155 EREMTDIIATIRESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWG 1214
Query: 1015 VNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074
VN PAHLVI+KGTEYYDGKT+RYVD+PITD+LQMMGRAGRPQ+D GKAVILVH+ KK F
Sbjct: 1215 VNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDF 1274
Query: 1075 YKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL 1134
YKKFLYEPFPVESSL L DH NAEI +GT+ K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1275 YKKFLYEPFPVESSLLSVLSDHLNAEIAAGTVTSKQDAMDYITWTYFFRRLVMNPSYYNL 1334
Query: 1135 EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMF 1192
+D E ++ YLS LV+ + DLE S C+++ +D T+EP G I+S YYL + T+ MF
Sbjct: 1335 DDISHETINKYLSNLVERSLRDLECSYCMEIQQDEQTIEPLTYGRISSYYYLKHQTIRMF 1394
Query: 1193 GSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKAN 1252
+ P+ + L ILS
Sbjct: 1395 KERLKPELPVHELLAILS------------------------------------------ 1412
Query: 1253 LLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQ 1312
LP SDY TD K+VLD +IRI QAM+D+ AN GWL S+++ +L+QM++Q
Sbjct: 1413 -----------LPCSDYGTDTKTVLDNAIRICQAMLDVVANEGWLVSALSLCNLVQMIIQ 1461
Query: 1313 GLWFEQDSALWMFPCMNNDLLGTLR---ARGI 1341
W DS+L P + L R +RG+
Sbjct: 1462 ARWL-HDSSLLTLPHIQKQELYVFRRWSSRGV 1492
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkhb3, enabling alkhb3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug81 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1388 bits (3593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/1502 (47%), Positives = 993/1502 (66%), Gaps = 51/1502 (3%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-SEPNF 59
VE++Q+MIRIVGLSATLPNYL+VA FL VN GLF+F S++RP P+ Q +IG P
Sbjct: 445 VETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKI 504
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
N + E C+ KV+ +++GHQ M+FVHSRK+T+ +A+KL + + ++ +N H
Sbjct: 505 VNSN--IDEACFDKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQH 562
Query: 120 PQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLA 179
+ SL ++DV KS+NK+L ELF ++G+H+AGMLRSDR LTERLFS G+LK+L CTATLA
Sbjct: 563 EKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLA 622
Query: 180 WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKL 236
WGVNLPA+ V+IKGTQLYDP+ G + DLG+LD IFGRAGRPQF+ S IIT+HDKL
Sbjct: 623 WGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKL 682
Query: 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAY 296
++Y+ ++T Q PIES+F L DNLNAEV+LGTVTN+ EA +WLGYTYL IRM+ NPL Y
Sbjct: 683 SHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVY 742
Query: 297 GIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYS 356
GI +DE++ DP L K+R LV+ AA L +M+ +++K+G +LGRIAS++YI Y
Sbjct: 743 GIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQ 802
Query: 357 SVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNK 416
+V T N +L+ M+++++I ++S SEF I R+ E ELE+L++ P +++ SN
Sbjct: 803 TVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNT 862
Query: 417 HGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYC 476
GK+++++Q YISR ++ F+L SD Y++ + RI RALFE + R W + +L
Sbjct: 863 SGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLN 921
Query: 477 KAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADL--DRLQEMEEKDIGALIRYTPGGR 534
K++DR+ W +HPL QFD LP ++ K+E + L + L +M ++G LI G
Sbjct: 922 KSIDRRQWSFEHPLLQFD--LPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGP 979
Query: 535 LVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDH 594
VK+++ P + ++ + P+T+ VL++ L ITP F W +HG +Q +WI V+DS
Sbjct: 980 TVKKFISKLPLLNINVDLLPLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLE 1039
Query: 595 IYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
I H E L KR + LSFT+P+ P P Q YI AVSD WL AE +S N+
Sbjct: 1040 ILHHEQLLLNKRNV-STSHLLSFTIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVF 1098
Query: 655 PQARTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAP 712
TELLDL+PLP+TAL + + E + FS FN +QTQ FH +YHTD N+ +GAP
Sbjct: 1099 HDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAP 1158
Query: 713 TGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGD 772
TGSGKT++AELA + KVVYIAP+KA+V+ER+ DW RLV +G M+E+TGD
Sbjct: 1159 TGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGD 1218
Query: 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832
PD+ A+ +A+III+TPEKWDGI+R+W SR YV+ V L+ILDEIHLLG++RGP+LE+IV
Sbjct: 1219 TNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIV 1278
Query: 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYP 892
SRM Y++SQT + VR +GLSTA+ANA DLA+WL + + GLFNF+ SVRPVPLE++I G+P
Sbjct: 1279 SRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRD-GLFNFRHSVRPVPLEIYIDGFP 1337
Query: 893 GKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
G+ YCPRM SMNKPA+ AI THSPT+PVLIFVSSRRQTRLTA DLI F ++ PR+FL
Sbjct: 1338 GRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLY 1397
Query: 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA 1012
M EE+L+M++S+V D++L+ L FGI LHHAGL + DR + EELF NNK+Q+L+ TSTLA
Sbjct: 1398 MDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLA 1457
Query: 1013 WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
WGVN PAHLVI+KGTEYYD K Y D +TD+LQM+GRAGRPQ+D G A I V + KK
Sbjct: 1458 WGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKK 1517
Query: 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132
SFYK FL+ FPVES L L +H NAEI +GTI + A+ +L+ TY +RR+ NP YY
Sbjct: 1518 SFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYY 1577
Query: 1133 GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCV-KMTEDTVEPTMLGTIASQYYLSYVTVSM 1191
G + + + + +YLS+LV F +LE S C+ ++ E+T PT LG I S YYL + T+
Sbjct: 1578 GADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIRN 1637
Query: 1192 FGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRF--AVDNNRLDDPHV 1249
F I + ++ L +L+ ASE+D+L +RHNED N +++ +++ A N + D HV
Sbjct: 1638 FVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAHV 1697
Query: 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQM 1309
KA +L QAH +RL LP+ DYVTD +VLDQ IRIIQ+ ID+ A G+ + + L+Q
Sbjct: 1698 KAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQC 1757
Query: 1310 VMQGLWFEQDSALWMFPCMN-------NDLLGTLRARGISTVQQLLDIPKENLQTVIGNF 1362
+ Q + + P +N D L + Q+L N+ F
Sbjct: 1758 LKQAC-YPSEIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQML-CNDPNV------F 1809
Query: 1363 PVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTS-RAFALRFPKIK 1421
+ L L +P++ +++ D L L +R ++N N FA FPK +
Sbjct: 1810 DIESLVNSLISYPKMNIEVSQSSSD-----KLLLYLR--RLNQPLNPDFYIFAPLFPKPQ 1862
Query: 1422 DEAWWLVLGNTNTSELYALKRISFSDRLN---------THMELPSGITTFQGMKLVVVSD 1472
E +++++ ++ T EL+A++R SF+ R N M++P + +K++VV D
Sbjct: 1863 SEGFFVLIIDSETQELFAIRRASFAGRRNDDSIRLSLRISMDIPPTCRN-RNVKVMVVCD 1921
Query: 1473 CY 1474
Y
Sbjct: 1922 GY 1923
|
Has a role in meiosis. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/1499 (44%), Positives = 991/1499 (66%), Gaps = 17/1499 (1%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+E TQ +R++GLSATLPNY +VA FLRV+P GLF+FD+S+RP+PL Q Y+GI+E
Sbjct: 639 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAI 698
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
R ++++EI Y+K+++ + +Q +VFVHSRK+T KTA+ + D+ + L +F +
Sbjct: 699 KRFQIMNEIVYEKIMEHAGK-NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSA 757
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+++ + + +N +L +L +HHAGM R DR L E LF++ ++VLV TATLAW
Sbjct: 758 STEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 817
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIF---GRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTV+IKGTQ+Y P+ G W +LG LDI GRAGRPQ+D GEGI+ITSH +L
Sbjct: 818 GVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 877
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYL LL QLPIESQ +S L D LNAE+ LG V N K+A WLGY YL IRM +P YG
Sbjct: 878 YYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYG 937
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I D++ DP L ++ LV AA LDK ++++D+K+GNF TELGRIASH+YI +
Sbjct: 938 ISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDT 997
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
V+TYN++L+ +++ E+ + S SSEF+NI VR+EE+ EL+ L++ + P+ VK
Sbjct: 998 VQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV-PIPVKESIEEPS 1056
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
KI++L+Q +IS+ ++ F+L++D Y++ S R+MRA+FE L RGW +++ L CK
Sbjct: 1057 AKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCK 1116
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF K LP E+++K+E++ +RL ++ +IG LIR G+ +
Sbjct: 1117 MIDKRMWQSMCPLRQFRK-LPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIH 1175
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
+Y+ FP ++LS + PITR+ LK+ L ITP+F W + HG+++ +WI+V+D +S+ I H
Sbjct: 1176 KYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILH 1235
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
E F L + A+ E ++F VP+FEP PPQY+IR VSD WL E +SF +L LP+
Sbjct: 1236 HEYFLLKAKYAQDE-HLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
TELLDL+PLPV+AL N+ +E+LY F FNPIQTQ+F+ +Y++D+NV +GAPTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKTI AE A+L + S+ + VYI P++A+ + DW ++ +L K++V +TG+ +
Sbjct: 1355 GKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
DL L +IIISTPEKWD +SR W R V+ + L ++DE+HL+G E GP+LEVI SRM
Sbjct: 1415 DLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRM 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
RYISSQ ER +R + LS++L+NA D+A WLG FNF P+VRPVPLE+HIQG+
Sbjct: 1475 RYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
R+ SM KP Y AI HSP KPV++FV SR+QTRLTA+D++ A+D ++FL E
Sbjct: 1535 TQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1594
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+DL L +++D L++TL G+G H GL+ +R LVE+LF++ IQV+V + +L WG+
Sbjct: 1595 KDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGM 1654
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N+ AHLVII T+YY+GK YVD+PI D+LQM+G A RP D G+ VI+ KK F+
Sbjct: 1655 NVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1714
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEP PVES L +HDHFNAEIV+ TI +K+DAV YL+WT+L+RR+ NP YY L+
Sbjct: 1715 KKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQ 1774
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT-VEPTMLGTIASQYYLSYVTVSMFGS 1194
LS +LS LV+ T DLE S C+ + ++ V P LG IA+ YY++Y T+ +F
Sbjct: 1775 GISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSM 1834
Query: 1195 NIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLL 1254
++ T + + I+S A+EY+ +P+RH+EDN L+Q+V ++N + +DPHVK NLL
Sbjct: 1835 SLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLL 1894
Query: 1255 FQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGL 1314
QAH SR+ L ++ +D + +L ++IR+IQA +D+ +++GWLS ++ M L QMV Q +
Sbjct: 1895 LQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAM 1953
Query: 1315 WFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE--NLQTVIGNFPVSRLHQDLQ 1372
W +DS L P ++ + +G+ +V ++++ E N + + ++ + +
Sbjct: 1954 W-SKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 2012
Query: 1373 RFPRIQVKLRLQRRD-IDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGN 1431
R+P I++ + +D I + + +++++ + T A FP+ ++E WW+V+G+
Sbjct: 2013 RYPNIELSYEVVDKDSIRSGGPVVVLVQLER--EEEVTGPVIAPLFPQKREEGWWVVIGD 2070
Query: 1432 TNTSELYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490
++ L ++KR++ + ++ + T L +SD Y+G +QE+ V+++
Sbjct: 2071 AKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2129
|
Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLH1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1309 bits (3387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1486 (45%), Positives = 949/1486 (63%), Gaps = 61/1486 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-SEPNF 59
VES+Q MIRI+GLSATLPN+++VA FL VN ++G+F+FD S+RP PL QQ +G +
Sbjct: 451 VESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGS 510
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
E + ++ Y K+ + +++G+Q MVFVHSRK+TVK+A+ + LA ++++F D
Sbjct: 511 RQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDP- 569
Query: 120 PQLSLIKKD-----VMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVC 174
I+KD ++K+R+KD+ E+F G+HHAGM RSDR LTE++F +G +KVL C
Sbjct: 570 -----IEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCC 624
Query: 175 TATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIF----GRAGRPQFDRSGEGIII 230
TATLAWGVNLPA V+IKGTQ+YD K GG+ DLG+ D+ +G GI+
Sbjct: 625 TATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILC 684
Query: 231 TSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMK 290
TS+D+L +Y+ L+T Q PIES+F S L DNLNAE++LG+VTNV EA WLGYTY+ +RM+
Sbjct: 685 TSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMR 744
Query: 291 LNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASH 350
NP YGI W+E+ DP L ++R ++ AAR L +M+ FDE S +F +LGR++S
Sbjct: 745 KNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSD 804
Query: 351 FYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK 410
FY+ SVE +N+M +++V+ M+S SSEF+ I R+EE EL+ L ++
Sbjct: 805 FYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIG 864
Query: 411 GGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSL 470
GK ++L+Q YIS+ I +L SD+ Y++ + RI RALF + R W + S
Sbjct: 865 SQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSN 924
Query: 471 FMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYT 530
ML CK++++++W HPL QFD LP I+R++ + ++ L E+E ++G L+
Sbjct: 925 VMLNICKSIEKRLWAFDHPLCQFD--LPENIIRRIRDTKPSMEHLLELEADELGELVHNK 982
Query: 531 PGGRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDS 590
G + + L FP I + A + PIT V++I +A+ P+F W HG AQ +W+ V++S
Sbjct: 983 KAGSRLYKILSRFPKINIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEES 1042
Query: 591 ESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFH 650
+ I H E F L +R + ++ F +P+ +P PPQ ++ VSD+W+ E+ + ISF
Sbjct: 1043 DKSQILHFEKFILNRRQLNNQ-HEMDFMIPLSDPLPPQVVVKVVSDTWIGCESTHAISFQ 1101
Query: 651 NLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLG 710
+L P T T+LL L+PLP +AL N + E++Y F +FNP+QT F+ LY+T+ N +G
Sbjct: 1102 HLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVG 1161
Query: 711 APTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMT 770
+PTGSGKTI AELA+ H F T K+VYIAP+KA+VRER++DW+ ++ G ++VE+T
Sbjct: 1162 SPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELT 1221
Query: 771 GDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830
GD PD + A I+I+TPEK+DGISRNW +R +V+ V L+I+DEIHLL ++RGPILE+
Sbjct: 1222 GDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEM 1281
Query: 831 IVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG 890
IVSRM YISSQT++ VR +G+STA++NA D+A WLGV + GL+NF SVRPVPL+++I G
Sbjct: 1282 IVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDG 1341
Query: 891 YPGKF-YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ 949
+P +CP M +MNKP + AI HSP KP LIFV+SRRQTRLTALDLI ++ PR+
Sbjct: 1342 FPDNLAFCPLMKTMNKPVFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRR 1401
Query: 950 FLGMP-EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT 1008
FL + EE+LQ LSQVTD L+ +LQFGIGLHHAGL KDRS+ +LF NKIQ+L+ T
Sbjct: 1402 FLNIDDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIAT 1461
Query: 1009 STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068
STLAWGVNLPAHLVIIKGT+++D K + Y D +TDILQMMGRAGRP YD G A++
Sbjct: 1462 STLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTK 1521
Query: 1069 EPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAIN 1128
E KK FYK FL FPVESSL L DH AEI SG+I +K++A+ +LSWT+LFRR N
Sbjct: 1522 ESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHN 1581
Query: 1129 PAYYGLED-TEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYV 1187
P YYG+ED T G+S +LS L+ +T E+L +S CV + D + T +I+S YY+S++
Sbjct: 1582 PTYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHGDDIVATPFLSISSYYYISHL 1641
Query: 1188 TVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLD-- 1245
T+ I + + L LS A EY+ELPVR E NE +SQ+ R++V++ D
Sbjct: 1642 TIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEF 1701
Query: 1246 -----DPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSS 1300
DPHVK LL QAH SR+DLPI+DY+ D SVLDQS+RI+QA ID+ + G+ +
Sbjct: 1702 ELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTV 1761
Query: 1301 ITCMHLLQMVMQGLWFEQDSA---------------------LWMFPCMNNDLLGTLRAR 1339
+T + ++Q + QG W+E D + M P L TL
Sbjct: 1762 LTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEI 1821
Query: 1340 GISTVQQLLDIPKE-NLQTVIGNFPVSRLHQDLQRFPRIQ-VKLRLQRRDIDGENSLTLN 1397
G ++LL++ + R QR P ++ +K Q EN+ L
Sbjct: 1822 GRFGYKKLLNVFDQLTFGMTESEDTKKRFVSVCQRLPVLEGMKFEEQ------ENNEVLT 1875
Query: 1398 IRMDKMNSWKNTS-RAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
++S N + +FPKI+ E W+L+ EL +KR
Sbjct: 1876 FYSKHLSSKHNNGFEVYCDKFPKIQKELWFLI--GHKGDELLMIKR 1919
|
Together with SKI2, represses the translation of non-poly(A) mRNAs. May block translation by inhibiting translation initiation factor 5B (FUN12) action on mRNAs lacking a 3' poly(A) structure. Involved in antiviral defense, preventing L-A dsRNA virus propagation by specifically blocking translation of viral mRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1492 | ||||||
| 225457229 | 2093 | PREDICTED: activating signal cointegrato | 0.995 | 0.709 | 0.866 | 0.0 | |
| 255547213 | 2100 | activating signal cointegrator 1 complex | 0.997 | 0.708 | 0.867 | 0.0 | |
| 356516857 | 2088 | PREDICTED: activating signal cointegrato | 0.995 | 0.711 | 0.852 | 0.0 | |
| 449487073 | 2067 | PREDICTED: LOW QUALITY PROTEIN: activati | 0.995 | 0.718 | 0.851 | 0.0 | |
| 449439311 | 2093 | PREDICTED: activating signal cointegrato | 0.995 | 0.709 | 0.846 | 0.0 | |
| 334188537 | 2157 | U5 small nuclear ribonucleoprotein helic | 0.997 | 0.689 | 0.839 | 0.0 | |
| 297793665 | 2112 | hypothetical protein ARALYDRAFT_919354 [ | 0.990 | 0.699 | 0.839 | 0.0 | |
| 30697481 | 2146 | U5 small nuclear ribonucleoprotein helic | 0.989 | 0.688 | 0.832 | 0.0 | |
| 224130174 | 1544 | predicted protein [Populus trichocarpa] | 0.888 | 0.858 | 0.887 | 0.0 | |
| 242036511 | 2084 | hypothetical protein SORBIDRAFT_01g04298 | 0.995 | 0.713 | 0.770 | 0.0 |
| >gi|225457229|ref|XP_002284129.1| PREDICTED: activating signal cointegrator 1 complex subunit 3 [Vitis vinifera] gi|297733882|emb|CBI15129.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2735 bits (7090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1291/1490 (86%), Positives = 1387/1490 (93%), Gaps = 4/1490 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLPNYLEVAQFLRVNPE GLF+FDSSYRP+PLAQQYIGISE NF
Sbjct: 598 VESTQTMIRIVGLSATLPNYLEVAQFLRVNPEAGLFYFDSSYRPVPLAQQYIGISEQNFL 657
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
AR ELL+EICY KVVDSLRQGHQAMVFVHSRKDT KTA+KL++LARR +D+E+F N+THP
Sbjct: 658 ARTELLNEICYNKVVDSLRQGHQAMVFVHSRKDTAKTAEKLIELARRNDDVELFKNETHP 717
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q SL+K +VMKSRNKDL+E FG VG+HHAGMLR+DRGLTERLFS+GLLKVLVCTATLAW
Sbjct: 718 QFSLVKMEVMKSRNKDLVEYFGSGVGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAW 777
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD IFGRAGRPQFD+SGEGIIITSH+KLA
Sbjct: 778 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLA 837
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYL IRM+LNPLAYG
Sbjct: 838 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYG 897
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGWDEVIADPSLSLKQRA VTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS
Sbjct: 898 IGWDEVIADPSLSLKQRAFVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 957
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEMLRRHMNDSEVI+MV+HSSEFENIVVR+EEQNELE L +T CP+E+KGGPSNKH
Sbjct: 958 VETYNEMLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELEMLARTSCPLEIKGGPSNKH 1017
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG ID+FSL+SDAAYISASLARIMRALFE CLRRGWCEM FML+YCK
Sbjct: 1018 GKISILIQLYISRGSIDSFSLISDAAYISASLARIMRALFEICLRRGWCEMCSFMLDYCK 1077
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQ+WPHQHPLRQFDK+L ++ILRKLE+RGADLDRL +M+EKDIGALIRY GG+LVK
Sbjct: 1078 AVDRQVWPHQHPLRQFDKDLSSDILRKLEDRGADLDRLYDMQEKDIGALIRYASGGKLVK 1137
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
QYLGYFPSIQLSATVSPITRTVLKI L I +F WKD FHGAAQRWWI+V+DS++DHIYH
Sbjct: 1138 QYLGYFPSIQLSATVSPITRTVLKIDLLIASDFVWKDRFHGAAQRWWILVEDSDNDHIYH 1197
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
SE FTLTKRMARGE QKLSFTVPIFEPHPPQYYIRAVSDSWL AEAFY ISFHNLALP+A
Sbjct: 1198 SENFTLTKRMARGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQAEAFYTISFHNLALPEA 1257
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RTSHTELLDLKPLPVT+LGN YE LY FSHFNPIQTQ FH+LYHTDNNVLLGAPTGSGK
Sbjct: 1258 RTSHTELLDLKPLPVTSLGNRTYELLYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGK 1317
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAMLHLFNTQ DMKV+YIAPLKAIVRERM DWK R+VSQLGKEMVEMTGDYTPDL
Sbjct: 1318 TISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMIDWKKRIVSQLGKEMVEMTGDYTPDL 1377
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
MAL+SADIIISTPEKWDGISRNWH+R YVKKVGLMILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1378 MALMSADIIISTPEKWDGISRNWHNRGYVKKVGLMILDEIHLLGADRGPILEVIVSRMRY 1437
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTER VRF+GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC
Sbjct: 1438 ISSQTERTVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 1497
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSP KPVLIFVSSRRQTRLTALDLIQFAASDE PRQFL MPEE
Sbjct: 1498 PRMNSMNKPAYAAICTHSPMKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSMPEEA 1557
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQMVLSQVTDQNLR TLQFGIGLHHAGLNDKDRSLVEELF+NNKIQVLVCTSTLAWGVNL
Sbjct: 1558 LQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFSNNKIQVLVCTSTLAWGVNL 1617
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTE+YDGK KRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK
Sbjct: 1618 PAHLVIIKGTEFYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1677
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSLR+ HDH NAEIVSGTI HKEDA+HYL+WTYLFRRL +NPAYYGL+DT
Sbjct: 1678 FLYEPFPVESSLREHFHDHINAEIVSGTICHKEDAMHYLTWTYLFRRLMVNPAYYGLDDT 1737
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
+ E LSSYLSRLVQNTFEDLEDSGC++M ED VEP MLG+IASQYYLSY+TVSMFGSNIG
Sbjct: 1738 DPEILSSYLSRLVQNTFEDLEDSGCIQMNEDNVEPMMLGSIASQYYLSYMTVSMFGSNIG 1797
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLEVFLHILSGASEYDELPVRHNE+N+NEALS +V VD NRLDDPHVKANLLFQA
Sbjct: 1798 PDTSLEVFLHILSGASEYDELPVRHNEENYNEALSAKVPCMVDKNRLDDPHVKANLLFQA 1857
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L+LPISDYVTDLKSVLDQSIRI+QAMIDICANSGWLSS+ITCMHLLQM+MQGLWF
Sbjct: 1858 HFSQLELPISDYVTDLKSVLDQSIRIVQAMIDICANSGWLSSTITCMHLLQMIMQGLWFS 1917
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
+ S LWM PCM N+L G+L RGIS VQQLLD+PK LQ +I NFP SRL+QDLQ FP +
Sbjct: 1918 ETSCLWMLPCMTNELEGSLTRRGISKVQQLLDLPKATLQALINNFPASRLYQDLQYFPHV 1977
Query: 1378 QVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSEL 1437
+V L+LQR+D +G S TLNIR+++MNS + + RAFA RFPK+K+EAWWLVLGNT+TSEL
Sbjct: 1978 RVILKLQRKDANGGKSPTLNIRLERMNSKRKSLRAFAPRFPKVKNEAWWLVLGNTSTSEL 2037
Query: 1438 YALKRISFSDRLNTHMELPSGI-TTFQGMKLVVVSDCYLGFEQEHSIEAL 1486
+ALKR+SF+DRL THM+LPS T QGMKL++VSDCY+GFEQEHSIE L
Sbjct: 2038 FALKRVSFADRLVTHMKLPSSTPTNLQGMKLILVSDCYIGFEQEHSIEEL 2087
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547213|ref|XP_002514664.1| activating signal cointegrator 1 complex subunit 3, helc1, putative [Ricinus communis] gi|223546268|gb|EEF47770.1| activating signal cointegrator 1 complex subunit 3, helc1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2729 bits (7075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1294/1491 (86%), Positives = 1389/1491 (93%), Gaps = 3/1491 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLPNYLEVAQFLRVNPE GLFFFDSSYRP+PLAQQYIGISE NFA
Sbjct: 602 VESTQMMIRIVGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYIGISEQNFA 661
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARN+LL++ICYKKVVDSLRQGHQ MVFVHSRKDT KTA KLV+LAR Y+DLE+F ND HP
Sbjct: 662 ARNDLLNDICYKKVVDSLRQGHQVMVFVHSRKDTAKTADKLVELARNYDDLELFKNDAHP 721
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q SL+KK+V+KSRNKD+++LF AVG+HHAGMLR+DR LTERLFS+GLLKVLVCTATLAW
Sbjct: 722 QFSLVKKEVVKSRNKDVVQLFESAVGIHHAGMLRADRVLTERLFSDGLLKVLVCTATLAW 781
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD IFGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 782 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA 841
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYL IRM+ NPLAYG
Sbjct: 842 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRQNPLAYG 901
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGWDEVIADPSLSLKQR L+TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS
Sbjct: 902 IGWDEVIADPSLSLKQRGLITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 961
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEMLR HMNDSE+I MV+HSSEFENIVVR+EEQNELE +++ CP+EV+GGPSNKH
Sbjct: 962 VETYNEMLRPHMNDSEIINMVAHSSEFENIVVREEEQNELEMMLRMSCPLEVRGGPSNKH 1021
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG IDTFSLVSDAAYISASLARIMRALFE CL +GW EM LFMLEYCK
Sbjct: 1022 GKISILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLCKGWSEMCLFMLEYCK 1081
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQIWPHQHPLRQFDK+L EILRKLEERGADLDRLQEMEEKDIGALIRY GG+LVK
Sbjct: 1082 AVDRQIWPHQHPLRQFDKDLSTEILRKLEERGADLDRLQEMEEKDIGALIRYPHGGKLVK 1141
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
QYLGYF IQLSATVSPITRTVLK+ L ITP+F WKD FHGAAQRWWI+V+DSE+DHIYH
Sbjct: 1142 QYLGYFLWIQLSATVSPITRTVLKVDLLITPDFIWKDRFHGAAQRWWILVEDSENDHIYH 1201
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
SELFTLTKRMARGE QKL+FTVPIFEPHPPQY+I AVSDSWLHAEA Y ISFHNLALP+A
Sbjct: 1202 SELFTLTKRMARGEPQKLTFTVPIFEPHPPQYFIHAVSDSWLHAEALYTISFHNLALPEA 1261
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RT HTELLDLKPLPVT+LGNN YE+LY FSHFNPIQTQIFH+LYHTDNNVLLGAPTGSGK
Sbjct: 1262 RTMHTELLDLKPLPVTSLGNNAYESLYKFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGK 1321
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAML LFNTQ DMKV+YIAPLKAIVRERMNDW+ LVSQLGK+MVEMTGDYTPDL
Sbjct: 1322 TISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMNDWRKGLVSQLGKQMVEMTGDYTPDL 1381
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
MALLSADIIISTPEKWDGISRNWHSR+YV KVGLMILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1382 MALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRY 1441
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTERAVRF+GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK+YC
Sbjct: 1442 ISSQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKYYC 1501
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAA+DE PRQFL M EE
Sbjct: 1502 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAADEHPRQFLSMTEEA 1561
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQMVLSQVTDQNLR TLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL
Sbjct: 1562 LQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1621
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEYYDGK++RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK
Sbjct: 1622 PAHLVIIKGTEYYDGKSRRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1681
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSL++QLHDHFNAEIV+GTI HKEDAVHYL+WTYLFRR+ +NPAYYGLE+
Sbjct: 1682 FLYEPFPVESSLKEQLHDHFNAEIVTGTICHKEDAVHYLTWTYLFRRVMVNPAYYGLENA 1741
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
E E LSSYLS LVQNTFEDLEDSGC+KM ED VE TMLG IASQYYLSY+TVSMFGSNIG
Sbjct: 1742 EPENLSSYLSSLVQNTFEDLEDSGCLKMNEDNVESTMLGMIASQYYLSYMTVSMFGSNIG 1801
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLEVFLHILSGA EYDELPVRHNE+N+NEALSQRV + VD N LDDPHVKANLLFQA
Sbjct: 1802 PDTSLEVFLHILSGAFEYDELPVRHNEENYNEALSQRVLYMVDKNHLDDPHVKANLLFQA 1861
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L+LPISDYVTDLKSVLDQSIRIIQAMIDICANSGWL SSITCMHLLQMVMQGLWF+
Sbjct: 1862 HFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLLSSITCMHLLQMVMQGLWFD 1921
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
+DSALWM PCMN+DL L +GISTVQ LL +P+ LQ ++GN S+L+QDLQ FP I
Sbjct: 1922 KDSALWMLPCMNSDLATLLSKKGISTVQHLLALPRATLQAMVGNTLASKLYQDLQHFPCI 1981
Query: 1378 QVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSEL 1437
++KL+L++RD SLTLNI+++K NS K+TSRAF RFPKIKDEAWWL+LGNT+TSEL
Sbjct: 1982 KIKLKLEQRDTGDAKSLTLNIKLEKTNSRKSTSRAFVPRFPKIKDEAWWLILGNTSTSEL 2041
Query: 1438 YALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVE 1488
YALKR++FSDRL THM++PS +TTFQ +KL++VSDCYLGFEQEH IE LV+
Sbjct: 2042 YALKRVTFSDRLVTHMDIPSSLTTFQEIKLMLVSDCYLGFEQEHCIEELVK 2092
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516857|ref|XP_003527109.1| PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2711 bits (7026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1270/1489 (85%), Positives = 1383/1489 (92%), Gaps = 3/1489 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLPNYLEVAQFLRVNP+ GLFFFDSSYRP+PLAQQYIGISEPNFA
Sbjct: 597 VESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFA 656
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARNELL++ICY K+ DSLRQGHQAMVFVHSRKDT KTA KLV+LARR ED E+F+N+THP
Sbjct: 657 ARNELLNDICYTKIADSLRQGHQAMVFVHSRKDTAKTADKLVELARRNEDFELFSNNTHP 716
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q + +KK+V+KSRNKDL++LF VGVHHAGMLR+DRGLTERLFS+GLLKVLVCTATLAW
Sbjct: 717 QYTFMKKEVIKSRNKDLVQLFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAW 776
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD IFGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 777 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA 836
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYL IRM++NPLAYG
Sbjct: 837 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYG 896
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGWDEV+ DP+LS KQR+LV DAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS
Sbjct: 897 IGWDEVMVDPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 956
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEMLRRHMNDSEVI M++HSSEFENI VR+EEQNELE L +T CP+E+KGGPSNKH
Sbjct: 957 VETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKH 1016
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG ID+FSLVSDA+YISASLARI RALFE CLRRGWCEMSLFMLEYCK
Sbjct: 1017 GKISILIQLYISRGSIDSFSLVSDASYISASLARITRALFEICLRRGWCEMSLFMLEYCK 1076
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQ+WPHQHPLRQFDK+L AEILRKLEERGADLDRL EMEEKDIGALIRY PGGRLVK
Sbjct: 1077 AVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLYEMEEKDIGALIRYAPGGRLVK 1136
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
Q+LGYFPS+QLSATVSPITRTVLK+ L ITP F WKD FHG AQRWWI+V+DSE+DHIYH
Sbjct: 1137 QHLGYFPSLQLSATVSPITRTVLKVDLVITPVFIWKDRFHGTAQRWWILVEDSENDHIYH 1196
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
SELFTLTKRMARGE KLSFTVPIFEPHPPQYYI A+SDSWLHAEAFY I+FHNL LP+A
Sbjct: 1197 SELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHAEAFYTITFHNLPLPEA 1256
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RT+HTELLDLKPLP+++LGN+ YEALY FSHFNPIQTQ FH+LYHTDNNVLLGAPTGSGK
Sbjct: 1257 RTAHTELLDLKPLPMSSLGNSTYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGK 1316
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAML LFNTQ DMKV+YIAPLKAIVRERM+DW+ RLVSQLGK+MVEMTGDYTPDL
Sbjct: 1317 TISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKKMVEMTGDYTPDL 1376
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
ALLSA+IIISTPEKWDGISRNWHSR+YV KVGLMILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1377 TALLSANIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRY 1436
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTERAVRF+GLSTALANAGDLADWLGV EIGLFNFKPSVRPVPLEVHIQGYPGK+YC
Sbjct: 1437 ISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYC 1496
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSP KPVLIFVSSRRQTRLTALDLIQFAASDE RQFL +PEE
Sbjct: 1497 PRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEET 1556
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQMVLSQV+D NLR TLQFGIGLHHAGLNDKDRSLVEELFANNKIQ+LVCTSTLAWGVNL
Sbjct: 1557 LQMVLSQVSDLNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNL 1616
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEYYDGK KRYVDFPITDILQMMGRAGRPQ+DQHGKAVILVHEPKKSFYKK
Sbjct: 1617 PAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKK 1676
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSLR+QLHDH NAEI+SGTI HK+DAVHYL+WTYLFRRL +NPAYYGLED
Sbjct: 1677 FLYEPFPVESSLREQLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLEDA 1736
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
E+E L++YLS LVQ TFEDLEDSGC+KM ED VEP MLGTIASQYYLSY+TVSMFGSNIG
Sbjct: 1737 ESEFLNTYLSSLVQTTFEDLEDSGCIKMDEDKVEPMMLGTIASQYYLSYMTVSMFGSNIG 1796
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLEVFLHILS ASE+DELPVRHNE+ +NEALS++V++ VD NRLDDPH+KA LLFQA
Sbjct: 1797 PDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKVKYPVDKNRLDDPHIKALLLFQA 1856
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L+LPISDYVTDLKSVLDQSIR+IQAMIDICANSGWLSSSITCMHLLQMVMQGLWF+
Sbjct: 1857 HFSQLELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFD 1916
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
++S+LWM PCMN DL+ +L RGIS+VQ+LLDIPK LQTV NFP SRL+QDLQ FP +
Sbjct: 1917 KESSLWMLPCMNTDLISSLSRRGISSVQELLDIPKAALQTVTANFPASRLYQDLQHFPHV 1976
Query: 1378 QVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSEL 1437
++KL++QR+D DG+ S L++R++K NS +++SRAF RFPKIK+E WWLVLGNT+TSEL
Sbjct: 1977 KMKLKVQRKDTDGDRSRILSVRLEKTNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSEL 2036
Query: 1438 YALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEAL 1486
YALKR+S SD L T M+LP QG+KL++VSDCY+GFEQEHSIE L
Sbjct: 2037 YALKRVSVSDHLVTSMKLPLTPANLQGVKLILVSDCYIGFEQEHSIEEL 2085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487073|ref|XP_004157488.1| PREDICTED: LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2691 bits (6976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1268/1490 (85%), Positives = 1380/1490 (92%), Gaps = 4/1490 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLPNYLEVAQFLRVNP GLFFFDSSYRP+PLAQQYIGISE NFA
Sbjct: 578 VESTQTMIRIVGLSATLPNYLEVAQFLRVNPGTGLFFFDSSYRPVPLAQQYIGISEHNFA 637
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARNELL+EICYKK+VD+L+ GHQAMVFVHSRKDT KTA+KLV++ R+Y+DLE+F ND HP
Sbjct: 638 ARNELLNEICYKKIVDALKHGHQAMVFVHSRKDTAKTAEKLVEIGRKYDDLELFKNDAHP 697
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q +IKK+V+KSRNKDL+ELF VGVHHAGMLRSDRGLTERLFS+GLLKVLVCTATLAW
Sbjct: 698 QFGIIKKEVIKSRNKDLVELFNFGVGVHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAW 757
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD+ FGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 758 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQVFGRAGRPQFDKSGEGIIITSHDKLA 817
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YLRLLTSQLPIESQFI SLKDNLNAEVALGTVTNVKEACAWLGYTYL IRM+LNPLAYG
Sbjct: 818 HYLRLLTSQLPIESQFIGSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYG 877
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGWDEV+ADPSLS KQRAL+TDAARALDK+KMMRFDEKSGNFYCTELGRIASHFYIQYSS
Sbjct: 878 IGWDEVMADPSLSSKQRALITDAARALDKSKMMRFDEKSGNFYCTELGRIASHFYIQYSS 937
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEMLRRHMNDSE+I+MV+HSSEFENIVVRDEEQ+ELE ++T CP+EVKGGPSNKH
Sbjct: 938 VETYNEMLRRHMNDSEIIDMVAHSSEFENIVVRDEEQSELEMSIRTSCPLEVKGGPSNKH 997
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG IDTFSLVSDAAYISASLARIMRALFE CLRRGWCEM+LFMLEYCK
Sbjct: 998 GKISILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLRRGWCEMTLFMLEYCK 1057
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDR+IWPHQHPLRQFDK+L ++ILRKLEER ADLDRLQEM+EKDIGALIRY PGGRLVK
Sbjct: 1058 AVDRRIWPHQHPLRQFDKDLSSDILRKLEEREADLDRLQEMQEKDIGALIRYAPGGRLVK 1117
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
QYLGYFP IQLSATVSPITRTVLK+ + IT EF WKD FHG +QRWWI+V+D+E+DHIYH
Sbjct: 1118 QYLGYFPLIQLSATVSPITRTVLKVEVLITAEFIWKDRFHGGSQRWWILVEDNENDHIYH 1177
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
SELFTL K+ AR E Q+LSFTVPIFEPHPPQYYI AVSDSWL AEAFY ISF NLALP++
Sbjct: 1178 SELFTLAKKKAR-EPQRLSFTVPIFEPHPPQYYIHAVSDSWLQAEAFYTISFQNLALPES 1236
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
TSHTELLDLKPLP+TALGN YE+LY FSHFNPIQTQIFH+LYH+D+N+LLGAPTGSGK
Sbjct: 1237 HTSHTELLDLKPLPITALGNRSYESLYKFSHFNPIQTQIFHVLYHSDDNILLGAPTGSGK 1296
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAML LFNTQ DMKVVYIAPLKAIVRERMNDWK+ LVS+L K+MVEMTGDYTPDL
Sbjct: 1297 TISAELAMLRLFNTQPDMKVVYIAPLKAIVRERMNDWKNCLVSRLSKKMVEMTGDYTPDL 1356
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
MALLSADIIISTPEKWDGISRNWHSR+YV KVGLMILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1357 MALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRY 1416
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTER VRF+GLSTALANA DL DWLGVGE GLFNFKPSVRPVPLEVHIQGYPGKFYC
Sbjct: 1417 ISSQTERKVRFVGLSTALANASDLGDWLGVGENGLFNFKPSVRPVPLEVHIQGYPGKFYC 1476
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKP YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDE PRQFL MPEE+
Sbjct: 1477 PRMNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLNMPEEE 1536
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQM+L QV DQNLR TLQFGIGLHHAGLND DRS+VEELFANNKIQVLVCTSTLAWGVNL
Sbjct: 1537 LQMILCQVIDQNLRHTLQFGIGLHHAGLNDGDRSMVEELFANNKIQVLVCTSTLAWGVNL 1596
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEYYDGK+KRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP+KSFYKK
Sbjct: 1597 PAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPRKSFYKK 1656
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSL++QLHDH NAEIVSGTI HKEDAVHYLSWTYLFRRL +NPAYYGL+
Sbjct: 1657 FLYEPFPVESSLKEQLHDHINAEIVSGTICHKEDAVHYLSWTYLFRRLMVNPAYYGLDSM 1716
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
E E LSSYLSRLVQ+TFEDLEDSGC+KM ED+VEP MLG+IASQYYLSY+T+SMFGSNIG
Sbjct: 1717 EPEILSSYLSRLVQSTFEDLEDSGCIKMEEDSVEPMMLGSIASQYYLSYITLSMFGSNIG 1776
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLEVFLHILS ASEYDELPVRHNE+N+N ALS+RVR+ VD +RLDDPHVKANLL QA
Sbjct: 1777 PDTSLEVFLHILSAASEYDELPVRHNEENYNGALSERVRYKVDKDRLDDPHVKANLLLQA 1836
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L+LPISDY+TDLKSVLDQSIRIIQAMIDICANSGWLSSSITCM LLQMVMQGLWF+
Sbjct: 1837 HFSQLELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFD 1896
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
DSALWM PCMN+DL +L+ G T+QQLLD+PK LQ +IGNFP S+L QDLQ FPR+
Sbjct: 1897 VDSALWMIPCMNDDLASSLKKSGYLTLQQLLDLPKTALQNLIGNFPASKLTQDLQIFPRV 1956
Query: 1378 QVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSEL 1437
Q+K++L R+D D E + +LNIR++K++S K +RA+A RFPKIKDEAWWLVLGNT+TSEL
Sbjct: 1957 QMKIKLLRKDDDAEKAPSLNIRLEKISSRKTXTRAYAPRFPKIKDEAWWLVLGNTSTSEL 2016
Query: 1438 YALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALV 1487
YALKR+SFSDRL T M+LP FQ MKL++VSDCYLG+EQE+SI+ L+
Sbjct: 2017 YALKRVSFSDRLVTTMQLPPKRNDFQEMKLILVSDCYLGYEQEYSIKELL 2066
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439311|ref|XP_004137429.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2683 bits (6954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1269/1499 (84%), Positives = 1381/1499 (92%), Gaps = 13/1499 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLPNYLEVAQFLRVNP GLFFFDSSYRP+PLAQQYIGISE NFA
Sbjct: 595 VESTQTMIRIVGLSATLPNYLEVAQFLRVNPGTGLFFFDSSYRPVPLAQQYIGISEHNFA 654
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARNELL+EICYKK+VD+L+ GHQAMVFVHSRKDT KTA+KLV++ R+Y+DLE+F ND HP
Sbjct: 655 ARNELLNEICYKKIVDALKHGHQAMVFVHSRKDTAKTAEKLVEIGRKYDDLELFKNDAHP 714
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q +IKK+V+KSRNKDL+ELF VGVHHAGMLRSDRGLTERLFS+GLLKVLVCTATLAW
Sbjct: 715 QFGIIKKEVIKSRNKDLVELFNFGVGVHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAW 774
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD IFGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 775 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA 834
Query: 238 YYLRLLTSQLPIE---------SQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIR 288
+YLRLLTSQLPIE S+FI SLKDNLNAEVALGTVTNVKEACAWLGYTYL IR
Sbjct: 835 HYLRLLTSQLPIEMFNTFSFGDSEFIGSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIR 894
Query: 289 MKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIA 348
M+LNPLAYGIGWDEV+ADPSLS KQRAL+TDAARALDK+KMMRFDEKSGNFYCTELGRIA
Sbjct: 895 MRLNPLAYGIGWDEVMADPSLSSKQRALITDAARALDKSKMMRFDEKSGNFYCTELGRIA 954
Query: 349 SHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVE 408
SHFYIQYSSVETYNEMLRRHMNDSE+I+MV+HSSEFENIVVRDEEQ+ELE ++T CP+E
Sbjct: 955 SHFYIQYSSVETYNEMLRRHMNDSEIIDMVAHSSEFENIVVRDEEQSELEMSIRTSCPLE 1014
Query: 409 VKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEM 468
VKGGPSNKHGKISILIQLYISRG IDTFSLVSDAAYISASLARIMRALFE CLRRGWCEM
Sbjct: 1015 VKGGPSNKHGKISILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLRRGWCEM 1074
Query: 469 SLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR 528
+LFMLEYCKAVDR+IWPHQHPLRQFDK+L ++ILRKLEER ADLDRLQEM+EKDIGALIR
Sbjct: 1075 TLFMLEYCKAVDRRIWPHQHPLRQFDKDLSSDILRKLEEREADLDRLQEMQEKDIGALIR 1134
Query: 529 YTPGGRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQ 588
Y PGGRLVKQYLGYFP IQLSATVSPITRTVLK+ + IT EF WKD FHG +QRWWI+V+
Sbjct: 1135 YAPGGRLVKQYLGYFPLIQLSATVSPITRTVLKVEVLITAEFIWKDRFHGGSQRWWILVE 1194
Query: 589 DSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCIS 648
D+E+DHIYHSELFTL K+ AR E Q+LSFTVPIFEPHPPQYYI AVSDSWL AEAFY IS
Sbjct: 1195 DNENDHIYHSELFTLAKKKAR-EPQRLSFTVPIFEPHPPQYYIHAVSDSWLQAEAFYTIS 1253
Query: 649 FHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVL 708
F NLALP++ TSHTELLDLKPLP+TALGN YE+LY FSHFNPIQTQIFH+LYH+D+N+L
Sbjct: 1254 FQNLALPESHTSHTELLDLKPLPITALGNRSYESLYKFSHFNPIQTQIFHVLYHSDDNIL 1313
Query: 709 LGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768
LGAPTGSGKTISAELAML LFNTQ DMKVVYIAPLKAIVRERMNDWK+ LVS+L K+MVE
Sbjct: 1314 LGAPTGSGKTISAELAMLRLFNTQPDMKVVYIAPLKAIVRERMNDWKNCLVSRLSKKMVE 1373
Query: 769 MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828
MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSR+YV KVGLMILDEIHLLGA+RGPIL
Sbjct: 1374 MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPIL 1433
Query: 829 EVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHI 888
EVIVSRMRYISSQTER VRF+GLSTALANA DL DWLGVGE GLFNFKPSVRPVPLEVHI
Sbjct: 1434 EVIVSRMRYISSQTERKVRFVGLSTALANASDLGDWLGVGENGLFNFKPSVRPVPLEVHI 1493
Query: 889 QGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948
QGYPGKFYCPRMNSMNKP YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDE PR
Sbjct: 1494 QGYPGKFYCPRMNSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPR 1553
Query: 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT 1008
QFL MPEE+LQM+L QV DQNLR TLQFGIGLHHAGLND DRS+VEELFANNKIQVLVCT
Sbjct: 1554 QFLNMPEEELQMILCQVIDQNLRHTLQFGIGLHHAGLNDGDRSMVEELFANNKIQVLVCT 1613
Query: 1009 STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068
STLAWGVNLPAHLVIIKGTEYYDGK+KRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH
Sbjct: 1614 STLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1673
Query: 1069 EPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAIN 1128
EP+KSFYKKFLYEPFPVESSL++QLHDH NAEIVSGTI HKEDAVHYLSWTYLFRRL +N
Sbjct: 1674 EPRKSFYKKFLYEPFPVESSLKEQLHDHINAEIVSGTICHKEDAVHYLSWTYLFRRLMVN 1733
Query: 1129 PAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVT 1188
PAYYGL+ E E LSSYLSRLVQ+TFEDLEDSGC+KM ED+VEP MLG+IASQYYLSY+T
Sbjct: 1734 PAYYGLDSMEPEILSSYLSRLVQSTFEDLEDSGCIKMEEDSVEPMMLGSIASQYYLSYIT 1793
Query: 1189 VSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPH 1248
+SMFGSNIGPDTSLEVFLHILS ASEYDELPVRHNE+N+N ALS+RVR+ VD +RLDDPH
Sbjct: 1794 LSMFGSNIGPDTSLEVFLHILSAASEYDELPVRHNEENYNGALSERVRYKVDKDRLDDPH 1853
Query: 1249 VKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQ 1308
VKANLL QAHFS+L+LPISDY+TDLKSVLDQSIRIIQAMIDICANSGWLSSSITCM LLQ
Sbjct: 1854 VKANLLLQAHFSQLELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQ 1913
Query: 1309 MVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLH 1368
MVMQGLWF+ DSALWM PCMN+DL +L+ G T+QQLLD+PK LQ +IGNFP S+L
Sbjct: 1914 MVMQGLWFDVDSALWMIPCMNDDLASSLKKSGYLTLQQLLDLPKTALQNLIGNFPASKLT 1973
Query: 1369 QDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLV 1428
QDLQ FPR+Q+K++L R+D D E + +LNIR++K++S KN +RA+A RFPKIKDEAWWLV
Sbjct: 1974 QDLQIFPRVQMKIKLLRKDDDAEKAPSLNIRLEKISSRKNRTRAYAPRFPKIKDEAWWLV 2033
Query: 1429 LGNTNTSELYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALV 1487
LGNT+TSELYALKR+SFSDRL T M+LP FQ MKL++VSDCYLG+EQE+SI+ L+
Sbjct: 2034 LGNTSTSELYALKRVSFSDRLVTTMQLPPKRNDFQEMKLILVSDCYLGYEQEYSIKELL 2092
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188537|ref|NP_001190584.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gi|9759460|dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana] gi|332010043|gb|AED97426.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2671 bits (6924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1254/1493 (83%), Positives = 1384/1493 (92%), Gaps = 5/1493 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLP+YL+VAQFLRVN + GLF+FDSSYRP+PLAQQYIGI+E NFA
Sbjct: 665 VESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEHNFA 724
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARNELL+EICYKKVVDS++QGHQAM+FVHSRKDT KTA+KLVDLAR+YE L++F N+THP
Sbjct: 725 ARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHP 784
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q L+KKDVMKSRNKDL++ F G+HHAGMLRSDR LTERLFS+GLLKVLVCTATLAW
Sbjct: 785 QFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAW 844
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYD KAGGW+DLGMLD IFGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 845 GVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA 904
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQFISSLKDNLNAEV LGTVTNVKEACAWLGYTYLSIRMKLNPLAYG
Sbjct: 905 YYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 964
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGW+E+IADPSLSLKQRALV DAAR+LDKAKMMRFDEKSGNFYCTELGR+ASHFYIQYSS
Sbjct: 965 IGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSS 1024
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEML+RHMN+SE+I MV+HSSEFENIVVR+EEQ+ELETL ++ CP+EVKGGPSNKH
Sbjct: 1025 VETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKH 1084
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG ID FSLVSDA+YISASLARIMRALFE CLR+GWCEM+LFMLEYCK
Sbjct: 1085 GKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCK 1144
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQ+WPHQHPLRQF+++LP++ILRKLEER DLD L EMEEK+IGALIRY PGGRLVK
Sbjct: 1145 AVDRQLWPHQHPLRQFERDLPSDILRKLEERRDDLDHLYEMEEKEIGALIRYNPGGRLVK 1204
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
Q+LGYFPSIQL+ATVSPITRTVLK+ L ITP F WKD FHG A RWWI+++D+E+D+IYH
Sbjct: 1205 QHLGYFPSIQLAATVSPITRTVLKVDLLITPNFIWKDRFHGTALRWWILIEDTENDYIYH 1264
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
S+LFTLTKRMARGE QKLSFTVPIFEPHPPQYY+ AVSDSWLHAE ++ ISFHNLALP+A
Sbjct: 1265 SDLFTLTKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAETYFTISFHNLALPEA 1324
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RTSHTELLDLKPLPVT+LGN +YE+LY FSHFNPIQTQIFH+LYHTDNNVL+GAPTGSGK
Sbjct: 1325 RTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYHTDNNVLVGAPTGSGK 1384
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAML LF+TQ DMKVVYIAPLKAIVRERMNDWK LV+ LGKEMVEMTGDYTPDL
Sbjct: 1385 TISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDL 1444
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
+ALLSADIIISTPEKWDGISRNWH+R+YVKKVGL+ILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1445 VALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRY 1504
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTER+VRF+GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVP+EVHIQGYPGK+YC
Sbjct: 1505 ISSQTERSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYC 1564
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDE PRQFL + EED
Sbjct: 1565 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEED 1624
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQMVLSQ+TDQNLR TLQFGIGLHHAGLND DRS VEELF NNKIQVLV TSTLAWGVNL
Sbjct: 1625 LQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNL 1684
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEY+DGKTKRYVDFP+T+ILQMMGRAGRPQ+DQHGKAVILVHEPKKSFYKK
Sbjct: 1685 PAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKK 1744
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSL+++LHDHFNAEIVSGTI +KEDAVHYL+WTYLFRRL NPAYYGLE T
Sbjct: 1745 FLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGT 1804
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
+ E + SYLSRLVQ TFEDLEDSGC+K+ ED+VEPTMLGTIASQYYL Y+TVSMFGSNIG
Sbjct: 1805 QDETICSYLSRLVQTTFEDLEDSGCLKVNEDSVEPTMLGTIASQYYLCYMTVSMFGSNIG 1864
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLE FLHIL+GASEYDELPVRHNE+N+N+ LS RVR+ VDNN LDDPHVKANLLFQA
Sbjct: 1865 PDTSLEAFLHILAGASEYDELPVRHNEENYNKTLSDRVRYPVDNNHLDDPHVKANLLFQA 1924
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L LPISDY TDLKSVLDQSIRI+QAMIDICANSGWLSSS+TCM LLQMVMQG+W +
Sbjct: 1925 HFSQLALPISDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSD 1984
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
QDS+LWM PCMN+ LLG+L ARGI T+ QLL++P+E LQ+V NFP SRL QDLQRFPRI
Sbjct: 1985 QDSSLWMIPCMNDLLLGSLTARGIHTLHQLLNLPRETLQSVTENFPASRLSQDLQRFPRI 2044
Query: 1378 QVKLRLQRRDIDGENS-LTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSE 1436
Q+ +RLQ++D DG+ TL IR++K S +N+SRA A RFPK+KDEAWWLVLG+T+TSE
Sbjct: 2045 QMNVRLQKKDSDGKKKPSTLEIRLEK-TSKRNSSRALAPRFPKVKDEAWWLVLGDTSTSE 2103
Query: 1437 LYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQ 1489
L+A+KR+SF+ RL T MELP IT+FQ KL++VSDCYLGFEQEHSIE L +
Sbjct: 2104 LFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQLARR 2156
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793665|ref|XP_002864717.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp. lyrata] gi|297310552|gb|EFH40976.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2662 bits (6901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1253/1493 (83%), Positives = 1380/1493 (92%), Gaps = 15/1493 (1%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLP+YL+VAQFLRVNP+ GLF+FDSSYRP+PLAQQYIGI+E NFA
Sbjct: 631 VESTQTMIRIVGLSATLPSYLQVAQFLRVNPDTGLFYFDSSYRPVPLAQQYIGITEHNFA 690
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARNELL+EICYKKVVDS++QGHQAM+FVHSRKDT KTA+KLVDLAR+YE L++F N+THP
Sbjct: 691 ARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFANETHP 750
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q L+KKDVMKSRNKDL++ F G+HHAGMLRSDR LTERLFS+GLLKVLVCTATLAW
Sbjct: 751 QCQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAW 810
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYD KAGGW+DLGMLD IFGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 811 GVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA 870
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQFISSLKDNLNAEV LGTVTNVKEACAWLGYTYLSIRMKLNPLAYG
Sbjct: 871 YYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 930
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGWDE+IADPSLSLKQRALV DAAR+LDKAKMMRFDEKSGNFYCTELGR+ASHFYIQYSS
Sbjct: 931 IGWDEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSS 990
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEML+RHMN+SE+I MV+HSSEFENIVVR+EEQ+ELETL ++ CP+EVKGGPSNKH
Sbjct: 991 VETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKH 1050
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG ID FSLVSDA+YISASLARIMRALFE CLR+GWCEM+LFMLEYCK
Sbjct: 1051 GKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCK 1110
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQ+WPHQHPLRQFD++LP++ RGADLDRL EMEEKDIGALIRY PGGR
Sbjct: 1111 AVDRQLWPHQHPLRQFDRDLPSD-------RGADLDRLYEMEEKDIGALIRYNPGGR--- 1160
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
Q+LGYFPSIQL+ATVSPITRTVLK+ L ITP+F WKD FHGAA RWWI+++D+E+D+IYH
Sbjct: 1161 QHLGYFPSIQLAATVSPITRTVLKVDLLITPDFIWKDRFHGAALRWWILIEDTENDYIYH 1220
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
S+LFTLTKRMARGE QKLSFTVPIFEPHPPQYY+ AVSDSWLHAE+F+ ISFHNLALP+A
Sbjct: 1221 SDLFTLTKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAESFFTISFHNLALPEA 1280
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RTSHTELLDLKPLPVT+LGN +YE+LY FSHFNPIQTQIFH+LYHTDNNVL+GAPTGSGK
Sbjct: 1281 RTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYHTDNNVLVGAPTGSGK 1340
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAML LF+TQ DMKVVYIAPLKAIVRERMNDWK LV+ LGKEMVEMTGDYTPDL
Sbjct: 1341 TISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDL 1400
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
+ALLSADIIISTPEKWDGISRNWH+R+YVKKVGL+ILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1401 VALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRY 1460
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTER+VRF+GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVP+EVHIQGYPGK+YC
Sbjct: 1461 ISSQTERSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYC 1520
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDE PRQFL + EED
Sbjct: 1521 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEED 1580
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQMVLSQ+TDQNLR TLQFGIGLHHAGLND DRS VEELF NNKIQVLV TSTLAWGVNL
Sbjct: 1581 LQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNL 1640
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEY+DGKTKRYVDFP+T+ILQMMGRAGRPQ+DQHGKAVILVHEPKKSFYKK
Sbjct: 1641 PAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKK 1700
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSL+++LHDHFNAEIVSGTI +KEDAVHYL+WTYLFRRL NPAYYGLE T
Sbjct: 1701 FLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGT 1760
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
+ E + SYLSRLVQ TFEDLEDSGC+ + ED+VEPTMLGTIASQYYL Y+TVSMFGSNIG
Sbjct: 1761 QDETICSYLSRLVQTTFEDLEDSGCLNVNEDSVEPTMLGTIASQYYLCYMTVSMFGSNIG 1820
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLE FLHIL+GASEYDELPVRHNE+N+N+ LS +VR+ VDNN LDDPHVKANLLFQA
Sbjct: 1821 PDTSLEAFLHILAGASEYDELPVRHNEENYNKTLSDKVRYPVDNNHLDDPHVKANLLFQA 1880
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L LPISDY TDLKSVLDQSIRI+QAMIDICANSGWLSSS+TCM LLQMVMQG+W +
Sbjct: 1881 HFSQLALPISDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSD 1940
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
QDS+LWM PCMN+DLLG+L ARGI T+ QLLD+PKE LQ+V GNF SRL QDLQRFPRI
Sbjct: 1941 QDSSLWMIPCMNDDLLGSLTARGIHTLHQLLDLPKETLQSVTGNFFASRLSQDLQRFPRI 2000
Query: 1378 QVKLRLQRRDIDGENS-LTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSE 1436
Q+ +RLQ++D DG+ TL IR++K S +N+SRA A RFPK+KDEAWWLVLG+ +TSE
Sbjct: 2001 QMNVRLQKKDSDGKKKPSTLEIRLEK-TSKRNSSRALAPRFPKVKDEAWWLVLGDISTSE 2059
Query: 1437 LYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQ 1489
L+A+KR+SF+ RL T MELP IT+FQ KL++VSDCYLGFEQEHSIE L +
Sbjct: 2060 LFAVKRVSFTGRLITRMELPPTITSFQDTKLILVSDCYLGFEQEHSIEQLARR 2112
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697481|ref|NP_200922.2| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gi|332010042|gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2637 bits (6835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1243/1493 (83%), Positives = 1373/1493 (91%), Gaps = 16/1493 (1%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLP+YL+VAQFLRVN + GLF+FDSSYRP+PLAQQYIGI+E NFA
Sbjct: 665 VESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEHNFA 724
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
ARNELL+EICYKKVVDS++QGHQAM+FVHSRKDT KTA+KLVDLAR+YE L++F N+THP
Sbjct: 725 ARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHP 784
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q L+KKDVMKSRNKDL++ F G+HHAGMLRSDR LTERLFS+GLLKVLVCTATLAW
Sbjct: 785 QFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAW 844
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYD KAGGW+DLGMLD IFGRAGRPQFD+SGEGIIITSHDKLA
Sbjct: 845 GVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA 904
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQFISSLKDNLNAEV LGTVTNVKEACAWLGYTYLSIRMKLNPLAYG
Sbjct: 905 YYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 964
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGW+E+IADPSLSLKQRALV DAAR+LDKAKMMRFDEKSGNFYCTELGR+ASHFYIQYSS
Sbjct: 965 IGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSS 1024
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEML+RHMN+SE+I MV+HSSEFENIVVR+EEQ+ELETL ++ CP+EVKGGPSNKH
Sbjct: 1025 VETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKH 1084
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG ID FSLVSDA+YISASLARIMRALFE CLR+GWCEM+LFMLEYCK
Sbjct: 1085 GKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCK 1144
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQ+WPHQHPLRQF+++LP++ R DLD L EMEEK+IGALIRY PGGR
Sbjct: 1145 AVDRQLWPHQHPLRQFERDLPSD-------RRDDLDHLYEMEEKEIGALIRYNPGGR--- 1194
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
+LGYFPSIQL+ATVSPITRTVLK+ L ITP F WKD FHG A RWWI+++D+E+D+IYH
Sbjct: 1195 -HLGYFPSIQLAATVSPITRTVLKVDLLITPNFIWKDRFHGTALRWWILIEDTENDYIYH 1253
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
S+LFTLTKRMARGE QKLSFTVPIFEPHPPQYY+ AVSDSWLHAE ++ ISFHNLALP+A
Sbjct: 1254 SDLFTLTKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAETYFTISFHNLALPEA 1313
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RTSHTELLDLKPLPVT+LGN +YE+LY FSHFNPIQTQIFH+LYHTDNNVL+GAPTGSGK
Sbjct: 1314 RTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYHTDNNVLVGAPTGSGK 1373
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAML LF+TQ DMKVVYIAPLKAIVRERMNDWK LV+ LGKEMVEMTGDYTPDL
Sbjct: 1374 TISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDL 1433
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
+ALLSADIIISTPEKWDGISRNWH+R+YVKKVGL+ILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1434 VALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRY 1493
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTER+VRF+GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVP+EVHIQGYPGK+YC
Sbjct: 1494 ISSQTERSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYC 1553
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDE PRQFL + EED
Sbjct: 1554 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEED 1613
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
LQMVLSQ+TDQNLR TLQFGIGLHHAGLND DRS VEELF NNKIQVLV TSTLAWGVNL
Sbjct: 1614 LQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNL 1673
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEY+DGKTKRYVDFP+T+ILQMMGRAGRPQ+DQHGKAVILVHEPKKSFYKK
Sbjct: 1674 PAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKK 1733
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVESSL+++LHDHFNAEIVSGTI +KEDAVHYL+WTYLFRRL NPAYYGLE T
Sbjct: 1734 FLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGT 1793
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
+ E + SYLSRLVQ TFEDLEDSGC+K+ ED+VEPTMLGTIASQYYL Y+TVSMFGSNIG
Sbjct: 1794 QDETICSYLSRLVQTTFEDLEDSGCLKVNEDSVEPTMLGTIASQYYLCYMTVSMFGSNIG 1853
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
PDTSLE FLHIL+GASEYDELPVRHNE+N+N+ LS RVR+ VDNN LDDPHVKANLLFQA
Sbjct: 1854 PDTSLEAFLHILAGASEYDELPVRHNEENYNKTLSDRVRYPVDNNHLDDPHVKANLLFQA 1913
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFS+L LPISDY TDLKSVLDQSIRI+QAMIDICANSGWLSSS+TCM LLQMVMQG+W +
Sbjct: 1914 HFSQLALPISDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSD 1973
Query: 1318 QDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRI 1377
QDS+LWM PCMN+ LLG+L ARGI T+ QLL++P+E LQ+V NFP SRL QDLQRFPRI
Sbjct: 1974 QDSSLWMIPCMNDLLLGSLTARGIHTLHQLLNLPRETLQSVTENFPASRLSQDLQRFPRI 2033
Query: 1378 QVKLRLQRRDIDGENS-LTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSE 1436
Q+ +RLQ++D DG+ TL IR++K S +N+SRA A RFPK+KDEAWWLVLG+T+TSE
Sbjct: 2034 QMNVRLQKKDSDGKKKPSTLEIRLEK-TSKRNSSRALAPRFPKVKDEAWWLVLGDTSTSE 2092
Query: 1437 LYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQ 1489
L+A+KR+SF+ RL T MELP IT+FQ KL++VSDCYLGFEQEHSIE L +
Sbjct: 2093 LFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQLARR 2145
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130174|ref|XP_002328672.1| predicted protein [Populus trichocarpa] gi|222838848|gb|EEE77199.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2495 bits (6466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1186/1336 (88%), Positives = 1259/1336 (94%), Gaps = 10/1336 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRIVGLSATLPNYLEVAQFLRV+PE GLFFFDSSYRP+PLAQQYIGISE NFA
Sbjct: 209 VESTQTMIRIVGLSATLPNYLEVAQFLRVSPETGLFFFDSSYRPVPLAQQYIGISEQNFA 268
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
AR +LL+EICYKKVVDSL+QGHQAMVFVHSRKDT KTA+KLV+LAR ED+E+F ND HP
Sbjct: 269 ARKDLLNEICYKKVVDSLKQGHQAMVFVHSRKDTAKTAEKLVELARNNEDVELFRNDEHP 328
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q +L KK+VMKSRNKDL+ELFG VGVHHAGMLR+DRGLTERLFS GLLKVLVCTATLAW
Sbjct: 329 QFALFKKEVMKSRNKDLVELFGSGVGVHHAGMLRADRGLTERLFSGGLLKVLVCTATLAW 388
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD IFGRAGRPQFD+SGEGIIITSH+KLA
Sbjct: 389 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLA 448
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLT QLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYL IRM+ NPLAYG
Sbjct: 449 YYLRLLTCQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRQNPLAYG 508
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
IGWDEVI DPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS
Sbjct: 509 IGWDEVIEDPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 568
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNE+LRRHMNDSEVI+MV+HSSEFENIVVR+EEQNELE L+++ CP+EV+GGPSNKH
Sbjct: 569 VETYNELLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELEMLLRSSCPLEVRGGPSNKH 628
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQLYISRG IDTFSLVSDA+YISASLARIMRALFE CLRRGW EMSLFMLEYCK
Sbjct: 629 GKISILIQLYISRGSIDTFSLVSDASYISASLARIMRALFEICLRRGWSEMSLFMLEYCK 688
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDRQIWPHQHPLRQFDK+L AEILRKLEERG+DLD LQEMEEKDIG LIRY PGGRLVK
Sbjct: 689 AVDRQIWPHQHPLRQFDKDLSAEILRKLEERGSDLDHLQEMEEKDIGTLIRYAPGGRLVK 748
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
QYLGYFP IQLSATVSPITRTVLK+ L I PEF WKD FHGAAQRWWI+V+DSE+DHIYH
Sbjct: 749 QYLGYFPRIQLSATVSPITRTVLKLDLLIIPEFIWKDRFHGAAQRWWILVEDSENDHIYH 808
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
SEL TLTKRM RGE KLSFTVPIFEPHPPQYYIRAVSDSWLHAE+FY ISFHNLALP+A
Sbjct: 809 SELLTLTKRMIRGEPHKLSFTVPIFEPHPPQYYIRAVSDSWLHAESFYTISFHNLALPEA 868
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
RTSHTELLDLKPLPVT+LGNN YEALY+FSHFNPIQTQIFHILYH+DNNVLLGAPTGSGK
Sbjct: 869 RTSHTELLDLKPLPVTSLGNNTYEALYSFSHFNPIQTQIFHILYHSDNNVLLGAPTGSGK 928
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TI+AELAML LF+TQ DMKV+YIAPLKAIVRERMNDW+ LVSQLGK+MVEMTGDYTPDL
Sbjct: 929 TIAAELAMLRLFSTQPDMKVIYIAPLKAIVRERMNDWRKHLVSQLGKQMVEMTGDYTPDL 988
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
MALLSADIIISTPEKWDGISRNWHSR+YV KVGL+ILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 989 MALLSADIIISTPEKWDGISRNWHSRSYVTKVGLVILDEIHLLGADRGPILEVIVSRMRY 1048
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHI-------QG 890
ISSQTERAVRF+GLSTALANA DLADWLGVGEIGLFNFKPSVRPVPLEVHI QG
Sbjct: 1049 ISSQTERAVRFVGLSTALANASDLADWLGVGEIGLFNFKPSVRPVPLEVHIQAIAFYGQG 1108
Query: 891 YPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQF 950
YPGK+YCPRMNSMNKPAYAAICTHSPTKPV+IFVSSRRQTRLTALDLIQFAASDE PRQF
Sbjct: 1109 YPGKYYCPRMNSMNKPAYAAICTHSPTKPVIIFVSSRRQTRLTALDLIQFAASDEHPRQF 1168
Query: 951 LGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTST 1010
L M EE LQMVLSQVTDQNLR TLQFGIGLHHAGLN++DRSLVEELFANNKIQVLVCTST
Sbjct: 1169 LSMTEEVLQMVLSQVTDQNLRHTLQFGIGLHHAGLNERDRSLVEELFANNKIQVLVCTST 1228
Query: 1011 LAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070
LAWGVNLPAHLVIIKGTEYYDGK KRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP
Sbjct: 1229 LAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1288
Query: 1071 KKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPA 1130
KKSFYKKFLYEPFPVESSLR+QLH+H NAEIV+GTI HKEDA+HYL+WTYLFRRL +NPA
Sbjct: 1289 KKSFYKKFLYEPFPVESSLREQLHEHINAEIVTGTICHKEDAMHYLTWTYLFRRLMVNPA 1348
Query: 1131 YYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVS 1190
YYGLE+ EAE L+SYLSRLVQ TFEDLEDSGC+KM E+ VE +LGTIASQYYLSY+TVS
Sbjct: 1349 YYGLENAEAETLNSYLSRLVQTTFEDLEDSGCIKMDEENVESMVLGTIASQYYLSYMTVS 1408
Query: 1191 MFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVK 1250
MFGSNIGPDTSLE+FLHILSGASEYDELPVRHNE+N+NEALS RVR+ VD N LDDPHVK
Sbjct: 1409 MFGSNIGPDTSLEMFLHILSGASEYDELPVRHNEENYNEALSGRVRYMVDKNGLDDPHVK 1468
Query: 1251 ANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMV 1310
ANLLFQAHFS+L+LPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLS+S+ CMHLLQMV
Sbjct: 1469 ANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSASVNCMHLLQMV 1528
Query: 1311 MQGLWFEQDSALWMFP 1326
MQGLWF++DS+LWM P
Sbjct: 1529 MQGLWFDKDSSLWMLP 1544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242036511|ref|XP_002465650.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor] gi|241919504|gb|EER92648.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 2436 bits (6313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1150/1493 (77%), Positives = 1304/1493 (87%), Gaps = 7/1493 (0%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VES Q MIRIVGLSATLP YLEVAQFLRVNP+ GLFFFDSSYRP+PLAQQYIGISE ++
Sbjct: 593 VESMQSMIRIVGLSATLPTYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISERDYT 652
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
R+EL + +CY+KVV+S++QGHQA+VFVH+RKDT KTA+ L+DLA + +LE+F++ HP
Sbjct: 653 KRSELFNTLCYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAAKAGELELFSSADHP 712
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
Q LIKKDV K+++++++E F G+H+AGM+RSDR L ERLF +GLLKVLVCTATLAW
Sbjct: 713 QFPLIKKDVSKAKSREVVEFFESGFGIHNAGMMRSDRSLMERLFGDGLLKVLVCTATLAW 772
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD IFGRAGRPQFD+SGEGIIIT+HDKLA
Sbjct: 773 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLA 832
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYLRLLTSQLPIESQF+ SLKDNLNAEVALGTVTNV+EAC WLGYTYL IRMK NPL YG
Sbjct: 833 YYLRLLTSQLPIESQFLGSLKDNLNAEVALGTVTNVREACTWLGYTYLFIRMKTNPLVYG 892
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I W+EV+ DPS+ KQR + DAARALDKAKMMRFDEKSGNFYCTELGRIASHFY+QYSS
Sbjct: 893 ITWEEVMGDPSMGAKQRTFIIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYLQYSS 952
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VETYNEMLRRHM++SE+I MV+HSSEFENIVVR+EEQ+ELETL + CP+E+KGGP++KH
Sbjct: 953 VETYNEMLRRHMSESELITMVAHSSEFENIVVREEEQDELETLARKACPLEIKGGPTDKH 1012
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKISILIQ+YISR ID+ SL SDA YIS SLARIMRALFE CLRRGW EMS +L+YCK
Sbjct: 1013 GKISILIQVYISRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSEMSSLLLQYCK 1072
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
AVDR+IWPH HPLRQFDK+L +IL KLEER DLD L EMEE +IGALIR++ G+LVK
Sbjct: 1073 AVDRKIWPHLHPLRQFDKDLSPQILWKLEERNVDLDHLYEMEENEIGALIRFSHQGKLVK 1132
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
QY GYFP + LSATVSPITRTVLK+ L ITPEF WKD +HG ++RWWIIV+DSE+D IYH
Sbjct: 1133 QYAGYFPYVNLSATVSPITRTVLKVDLHITPEFVWKDRYHGMSERWWIIVEDSENDTIYH 1192
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
SELFTLTK+MARG K+SF VPIFEPHPPQYYIRA+SDSWLHAE + +SFHNL LPQ
Sbjct: 1193 SELFTLTKKMARGTPTKISFNVPIFEPHPPQYYIRAISDSWLHAETLFTVSFHNLTLPQT 1252
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
+ +HTELLDLKPLP++ALGN YE LY FSHFNPIQTQ FH+LYHTDNNVLLGAPTGSGK
Sbjct: 1253 QITHTELLDLKPLPLSALGNKTYEDLYRFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGK 1312
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777
TISAELAMLHLFNT DMKVVYIAPLKAIVRERMNDW+ RLV+QLGK+MVEMTGD+TPDL
Sbjct: 1313 TISAELAMLHLFNTHPDMKVVYIAPLKAIVRERMNDWRKRLVTQLGKKMVEMTGDFTPDL 1372
Query: 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837
MALLSADIIISTPEKWDGISRNWHSR+YV KVGLMILDEIHLLGA+RGPILEVIVSRMRY
Sbjct: 1373 MALLSADIIISTPEKWDGISRNWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRY 1432
Query: 838 ISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
ISSQTER++RF+GLSTALANA DLADWLGV + GLFNFKPSVRPVPLEVHIQGYPGKFYC
Sbjct: 1433 ISSQTERSIRFVGLSTALANARDLADWLGVTDDGLFNFKPSVRPVPLEVHIQGYPGKFYC 1492
Query: 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957
PRMNSMNKPAYAAICTHSP KPVLIFVSSRRQTRLTALD+IQ AASDE PRQFL + +
Sbjct: 1493 PRMNSMNKPAYAAICTHSPNKPVLIFVSSRRQTRLTALDIIQLAASDEKPRQFLSIADNS 1552
Query: 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017
L MVLSQV+D NLR TLQFGIGLHHAGLND+DR+LVEELF+NNKIQVLVCTSTLAWGVNL
Sbjct: 1553 LDMVLSQVSDSNLRHTLQFGIGLHHAGLNDRDRTLVEELFSNNKIQVLVCTSTLAWGVNL 1612
Query: 1018 PAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077
PAHLVIIKGTEYYDGKTKRY+D+ ITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK
Sbjct: 1613 PAHLVIIKGTEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1672
Query: 1078 FLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
FLYEPFPVES+LR+ LHDH NAEIVSGTI +KE+A+ YL+WTYL+RRL +NPAYYGLEDT
Sbjct: 1673 FLYEPFPVESNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDT 1732
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197
E L+SYLSRLV+ TFEDLEDSGC+K+ + +V+ +LG IASQYYLSY+TVSMFGSNIG
Sbjct: 1733 ETNTLNSYLSRLVETTFEDLEDSGCIKVDDHSVKYLILGKIASQYYLSYLTVSMFGSNIG 1792
Query: 1198 PDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQA 1257
P+TSLEVF+HILS A+E+DELPVRHNEDN N LS V + VD + LDDPHVKANLLFQA
Sbjct: 1793 PNTSLEVFVHILSAAAEFDELPVRHNEDNLNRILSGNVPYPVDQHHLDDPHVKANLLFQA 1852
Query: 1258 HFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFE 1317
HFSR +LPISDYVTDLKSVLDQSIRIIQAMID+CANSGWLSS++TCMHLLQM++QGLWFE
Sbjct: 1853 HFSRAELPISDYVTDLKSVLDQSIRIIQAMIDVCANSGWLSSALTCMHLLQMIIQGLWFE 1912
Query: 1318 QD-SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPR 1376
+D +LWM P MN D+L L+ RG+STV LL + +E L ++ F S L+QDLQ FPR
Sbjct: 1913 RDYESLWMLPSMNGDILDHLKGRGVSTVPSLLVLSREELHKLLQPFSASELYQDLQHFPR 1972
Query: 1377 IQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSE 1436
+ VK++L R + + TLNIR+ NS ++ SRAFA RFPK K EAWWLVLGN +SE
Sbjct: 1973 VDVKVKL-RNEQERSKPPTLNIRLQLKNSRRSASRAFAPRFPKAKQEAWWLVLGNATSSE 2031
Query: 1437 LYALKRISFSDR-LNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVE 1488
LY LKRISF+DR +NT MELP Q KL++VSDCYLGF+ E+ +E L +
Sbjct: 2032 LYGLKRISFADRVVNTRMELPQMFDA-QETKLILVSDCYLGFDLEYYLEHLTK 2083
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1492 | ||||||
| UNIPROTKB|E1BNG3 | 2201 | ascc3 "Activating signal coint | 0.894 | 0.606 | 0.575 | 0.0 | |
| MGI|MGI:1925237 | 2198 | Ascc3 "activating signal coint | 0.887 | 0.602 | 0.578 | 0.0 | |
| UNIPROTKB|F6Y2F0 | 2202 | ASCC3 "Uncharacterized protein | 0.887 | 0.601 | 0.576 | 0.0 | |
| UNIPROTKB|Q8N3C0 | 2202 | ASCC3 "Activating signal coint | 0.890 | 0.603 | 0.576 | 0.0 | |
| UNIPROTKB|F1NTD6 | 2211 | ascc3 "Activating signal coint | 0.887 | 0.598 | 0.580 | 0.0 | |
| RGD|1307995 | 2197 | Ascc3 "activating signal coint | 0.886 | 0.602 | 0.564 | 0.0 | |
| UNIPROTKB|E2QVY0 | 1925 | ASCC3 "Uncharacterized protein | 0.860 | 0.667 | 0.580 | 0.0 | |
| DICTYBASE|DDB_G0290389 | 2195 | ascc3 "activating signal coint | 0.934 | 0.635 | 0.524 | 0.0 | |
| FB|FBgn0038344 | 2183 | CG5205 [Drosophila melanogaste | 0.941 | 0.643 | 0.508 | 0.0 | |
| POMBASE|SPBC13G1.10c | 1935 | mug81 "ATP-dependent RNA helic | 0.982 | 0.757 | 0.472 | 0.0 |
| UNIPROTKB|E1BNG3 ascc3 "Activating signal cointegrator 1 complex subunit 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 4088 (1444.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 774/1344 (57%), Positives = 993/1344 (73%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLFFFD +RP+PL Q ++GI N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQTFLGIKSANKV 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 695 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGP 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ +K V KSRN+ + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 EYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 875 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L+ + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H +S++ +VS + EF+ I VR+EE EL+TL+ C + GG N +
Sbjct: 995 IETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEVDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWTSPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I+P+F+W D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVTMEASIQPITRTVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLVLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYVK+V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKP + AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ + D NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWGV
Sbjct: 1594 REMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS LV+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 ERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL + + L+QMV+QG
Sbjct: 1894 LLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR 1337
W + DS+L P + N L R
Sbjct: 1954 RWLK-DSSLLTIPHIENHHLHIFR 1976
|
|
| MGI|MGI:1925237 Ascc3 "activating signal cointegrator 1 complex subunit 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 4085 (1443.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 771/1333 (57%), Positives = 987/1333 (74%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++GI N
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKM 695
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGP 755
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH VVIKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 816 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYG 935
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + L+ + + LDKAKM+RF+E++G F T+LGR ASHFYI+Y++
Sbjct: 936 ISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNT 995
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1116 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1174
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L I P+F+W D HG + WWI V+D +DHIY
Sbjct: 1175 QCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1235 HSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1294
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1295 ERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1355 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTP 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +R+YV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1415 DMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1475 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1535 YCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1594
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1595 QEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1654
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1655 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1714
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1715 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYSLG 1774
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L+ + +LE S C+++ ED T+EP G IAS YYL + TV MF
Sbjct: 1775 DVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMFK 1834
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + ++ + D PH KA+L
Sbjct: 1835 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHL 1894
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL + + HL+QMV+QG
Sbjct: 1895 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQG 1954
Query: 1314 LWFEQDSALWMFP 1326
W + DS+L P
Sbjct: 1955 RWLK-DSSLLTIP 1966
|
|
| UNIPROTKB|F6Y2F0 ASCC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 4080 (1441.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 769/1333 (57%), Positives = 987/1333 (74%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++G+ N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKV 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F
Sbjct: 695 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPSQGS 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ +K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 EYGHAEKQVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFDR GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 875 HYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L+ + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQVDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE H +S++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 995 IETFNEFFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELAAPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I P+FTW D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVTMEASIQPITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLVLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYVK+V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKP + AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ + D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 REMENIIGTLRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS LV+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 ERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ AN GWL +++ +L+QMV+QG
Sbjct: 1894 LLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTALNITNLVQMVIQG 1953
Query: 1314 LWFEQDSALWMFP 1326
W + DS+L P
Sbjct: 1954 RWLK-DSSLLSIP 1965
|
|
| UNIPROTKB|Q8N3C0 ASCC3 "Activating signal cointegrator 1 complex subunit 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 4067 (1436.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 771/1337 (57%), Positives = 991/1337 (74%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLFFFD +RP+PL Q ++GI N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKM 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F
Sbjct: 695 QQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGH 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
L +K V +SRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 DYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT + PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 875 HYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+TL+ C + GG N +
Sbjct: 995 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWASPLRQFSI-LPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I +FTW D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ +++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 REMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L++ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ AN GWL + + +L+QMV+QG
Sbjct: 1894 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNN 1330
W + DS+L P + N
Sbjct: 1954 RWLK-DSSLLTLPNIEN 1969
|
|
| UNIPROTKB|F1NTD6 ascc3 "Activating signal cointegrator 1 complex subunit 3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 4065 (1436.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 774/1333 (58%), Positives = 984/1333 (73%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FDS +RP+PL Q +IGI N
Sbjct: 644 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKV 703
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ + GHQ MVFVH+R TV+TA L + A+ + F +
Sbjct: 704 QQLNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGS 763
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+K V +SRNK L ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 764 DYGQAEKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAW 823
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH VVIKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 824 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 883
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 884 HYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 943
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP L + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 944 ISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNT 1003
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + +++ +VS + EFE I VR+EE EL+TL+ C + GG N +
Sbjct: 1004 IETFNELFDAHKTEGDILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNY 1063
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1064 GKINILLQTYISRGELDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1123
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP +L KLEE+ +D++++M + +IG ++ + G VK
Sbjct: 1124 VIDKRLWGWVSPLRQFSV-LPPSVLSKLEEKNLTVDKMKDMRKDEIGHMLHHVKIGLKVK 1182
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PSI + AT+ PITRTVL++ L ITP+FTW D HG + WWI V+D +DHIY
Sbjct: 1183 QCVHQIPSIAMEATIQPITRTVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1242
Query: 597 HSELFTLTKRMA-RGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F + K+ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1243 HSEYFIIQKKQVITKEPQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1302
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG+ YE LY F+HFNPIQTQIFH LYHTD NVLLGAPTGS
Sbjct: 1303 ERHPPHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGS 1362
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRER+ DWK R+ +LGK++VE+TGD TP
Sbjct: 1363 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDVTP 1422
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ A+ AD+I++TPEKWDG+SR+W +R+YV+KV ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1423 DMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRT 1482
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1483 NFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQH 1542
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM MNKPA+ AI +HSP KPVLIFVSSRRQTRLT+LDLI F A+++ P+Q+L M E
Sbjct: 1543 YCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDE 1602
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
++ ++ V D NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWGV
Sbjct: 1603 REMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1662
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVI+KGTEYYDGKT+RYVD+PITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1663 NFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1722
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL D L DH NAEI +GTI K+DA+ Y++WTY FRRL +NP YY L+
Sbjct: 1723 KKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLD 1782
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
+ + ++ YLS LV+ + DLE S C+++ ED T+EP G IAS YYL + T+ MF
Sbjct: 1783 NVSHDTMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFK 1842
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P++S+E L IL+ A EY +LPVRHNED N L++ + V+ + D H K +L
Sbjct: 1843 DQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIEVNPHSFDSSHTKTHL 1902
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAHFS LP DY TD K+VLDQ+IRI QAM+D+ A+ GWL +++ +L+QMV+QG
Sbjct: 1903 LLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQG 1962
Query: 1314 LWFEQDSALWMFP 1326
W DS+L P
Sbjct: 1963 RWIH-DSSLLTVP 1974
|
|
| RGD|1307995 Ascc3 "activating signal cointegrator 1 complex subunit 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 4001 (1413.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 753/1333 (56%), Positives = 979/1333 (73%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++GI N
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKM 695
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGP 755
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 816 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYG 935
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + L+ + + LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 936 ISHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 995
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1116 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1174
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L I P+F+W D HG + WWI V+D +DHIY
Sbjct: 1175 QCVHQIPSVTMEASIQPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1235 HSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1294
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1295 ERHPPHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1355 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTP 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +R+YV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1415 DMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1475 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ TH P +P L+ + R + +T L+LI F A++E P+Q+L M E
Sbjct: 1535 YCPRMASMNKPAFQESHTHCPDRPCLL-LPERMLSSMTKLELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
++++ +++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 QEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSQDAINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + ++ + D PH KA+L
Sbjct: 1834 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL +++ HL+QMV+QG
Sbjct: 1894 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQG 1953
Query: 1314 LWFEQDSALWMFP 1326
W + DS+L P
Sbjct: 1954 RWLK-DSSLLTIP 1965
|
|
| UNIPROTKB|E2QVY0 ASCC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 3977 (1405.0 bits), Expect = 0., P = 0.
Identities = 750/1292 (58%), Positives = 958/1292 (74%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++G+ N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKV 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F
Sbjct: 695 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPSQGS 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ +K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 EYGHAEKQVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFDR GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 875 HYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L+ + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQVDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE H +S++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 995 IETFNEFFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELAAPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAA-QRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I P+FTW D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVTMEASIQPITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLVLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYVK+V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKP + AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ + D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 REMENIIGTLRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS LV+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 ERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQ 1285
L QAH SR LP DY TD K+VLDQ++R+ Q
Sbjct: 1894 LLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQ 1925
|
|
| DICTYBASE|DDB_G0290389 ascc3 "activating signal cointegrator 1 complex subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 3831 (1353.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 750/1431 (52%), Positives = 1017/1431 (71%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-- 58
VE+TQ MIRIVGLSATLPNY +VA+F+R P G FFDSSYRP+PL Q +IG+ +
Sbjct: 641 VETTQEMIRIVGLSATLPNYKDVARFIRA-PASGTHFFDSSYRPVPLTQNFIGVKDNQGI 699
Query: 59 FAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDT 118
+N + +++CY+++ SL++GHQ M+FVHSRKDTVK+A+ L D+A+ E F+N+
Sbjct: 700 MVMKNNM-NQLCYERLEKSLKEGHQVMIFVHSRKDTVKSAEILSDMAK--EKHFRFSNE- 755
Query: 119 HPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
P KK+ K ++K++ LF + VHHAG+LRSDR + E+ F+ G +KVLVCTATL
Sbjct: 756 EPSFGA-KKEFEKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATL 814
Query: 179 AWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDK 235
AWGVNLPAHTV+IKGTQ+Y+ K GG+ DLG+ D IFGRAGRPQFD SGEG ++TS DK
Sbjct: 815 AWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDK 874
Query: 236 LAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLA 295
L +YL L++S +PIES+FI++L+D+LNAE+ LGTV+NV EA WL YTYL IRM NPL
Sbjct: 875 LDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLV 934
Query: 296 YGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQY 355
YGI + DP L +R ++ AA+ L++ KM RFDE+S N TELGRIASH+YI++
Sbjct: 935 YGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQSENLGMTELGRIASHYYIKH 994
Query: 356 SSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSN 415
S+ET+NEML + +V+ ++S+SSEFENI +R+EE EL+ L + C E+ +
Sbjct: 995 PSIETFNEMLNDQLGQDQVLNILSNSSEFENITLREEESTELDKLAENQCYYELT--VLD 1052
Query: 416 KHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEY 475
H K+ L+Q + SR ID FSLVSD+ Y + +RI+R LFE L++GWC +S +L+
Sbjct: 1053 SHSKVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSRILRGLFEISLKKGWCTVSKTILDL 1112
Query: 476 CKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRL 535
CK VD Q+W + PLRQ K L + +RK+EER +R+ +ME ++ ++ +
Sbjct: 1113 CKMVDHQLWHFESPLRQA-KVLSLDTIRKIEERDWTPERICDMEIGELSFVLGNQLIAKT 1171
Query: 536 VKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHI 595
++ FP + V PIT +++I + + P F+W D HG +Q +WI VQD+ES +I
Sbjct: 1172 TRKIAQQFPQLDFEIQVQPITANIIRINMTLIPMFSWNDKMHGDSQPFWIWVQDNESQYI 1231
Query: 596 YHSELFTLTKRMARGETQKLSFT--VPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLA 653
+HSE F LTK++ +T+ ++ T +P+ P P Q+++ +SD WL +E ISF +L
Sbjct: 1232 FHSEYFMLTKKIYN-QTEPITLTCIIPLPNPMPSQFFLHYISDRWLGSEGIREISFRHLV 1290
Query: 654 LPQA-RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAP 712
LPQ R +TELLDL+PLP AL N +E+L+ FSHFNPIQTQ+FH LY+T+NNVLLG+P
Sbjct: 1291 LPQQDRVVNTELLDLQPLPKEALKNKDFESLFKFSHFNPIQTQVFHTLYYTNNNVLLGSP 1350
Query: 713 TGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGD 772
TGSGKTI AELAM +F + MKVVYIAPLKA+VRERMNDWK + +LGK++VE+TGD
Sbjct: 1351 TGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGD 1410
Query: 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832
YTP+++AL +ADI+ +TPEKWDGISRNW +R+YV V L+I+DEIHL+G RGPILEVIV
Sbjct: 1411 YTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIV 1470
Query: 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYP 892
SRM+ IS QT +R +GLSTA+ANA DL++W+G+ +GLFNF+PS RPVP+EVHIQG+
Sbjct: 1471 SRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQ 1530
Query: 893 GKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
GK YCPRM +MNKP++AAI T+SP KPVLIFVSSRRQTRLTALDLI + D P Q++
Sbjct: 1531 GKNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQWI- 1589
Query: 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA 1012
D++ L++V DQ+LR TL FGIG+HHAGLND DR++VE LF NKIQ+L+ TSTLA
Sbjct: 1590 QKGFDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLA 1649
Query: 1013 WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
WGVNLPAHLVIIKGTEY+DGKTKRYVDFP+TD+LQM+GRAGRPQ+D+ GKA+++VHEPKK
Sbjct: 1650 WGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKK 1709
Query: 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132
FYKKFLY+PFPVES L+D LHDH NAEIVSGTI K+ A++YL T+ FRRL ++P+YY
Sbjct: 1710 QFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYY 1769
Query: 1133 GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE-DTVEPTMLGTIASQYYLSYVTVSM 1191
GLED E ++ YLS L+ +T DLE S C+++ E D + P +G IAS YYL+Y TV
Sbjct: 1770 GLEDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTVQN 1829
Query: 1192 FGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKA 1251
F NI D+ ++ L +LS A+EY E PVRHNE+ N+ L++ + + N +D H K
Sbjct: 1830 FSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGN--YEDSHTKV 1887
Query: 1252 NLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVM 1311
+LL QAHF R LPI+D+ TD KS LDQ IRI+QAMID+ G+ +++I + LLQM++
Sbjct: 1888 HLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLV 1947
Query: 1312 QGLWFEQDSALWMFPCMNNDLLGTLRAR-----G--ISTVQQLLDIPKENLQTVIGNFPV 1364
QG W + DS+L P +N D L + G IS + +L IP++ + + N +
Sbjct: 1948 QGRW-DYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGL 2006
Query: 1365 S--RLHQDLQ---RFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTS 1410
S ++ + L P+++++ + + + N+ N + N+ KN +
Sbjct: 2007 SDSQIKETLNVIDHLPKVKIEYFINTNN-NSNNNDDNNNENNNNNNKKNNN 2056
|
|
| FB|FBgn0038344 CG5205 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 3791 (1339.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 724/1425 (50%), Positives = 1000/1425 (70%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VES+Q MIRIVGLSATLPNY++VA FLRVNP GLF+FDS +RP+PL ++GI
Sbjct: 645 VESSQSMIRIVGLSATLPNYIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNFVGIKSVKQL 704
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + + CY+K V+ +++GHQ MVFVH+R TV+TA + +LA++ +F
Sbjct: 705 QQIADMDQCCYQKCVEMVQEGHQIMVFVHARNATVRTANVIRELAQQNNTSALFLPKDSA 764
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
L + + +SRNK L+ELF + +HHAGMLR+DR + E+ F EG + VLVCTATLAW
Sbjct: 765 AHGLATRSIQRSRNKQLVELFSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAW 824
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+I+GT +YD K G + DLG+LD IFGRAGRPQFD+SG G IITS+DKL
Sbjct: 825 GVNLPAHAVIIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITSYDKLN 884
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT+Q PIES F++ L DNLNAE+ LGT+TNV EA WL YTYL +RM++NP YG
Sbjct: 885 HYLSLLTNQFPIESNFVNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVYG 944
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I + E+ DP+L ++RAL+ AA +LDKA+MMRF++++ + T+LGR AS+FYI+Y +
Sbjct: 945 IEYSELEKDPTLEARRRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDT 1004
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
VET+NE+++ M +E++ M+S + EF+ + VRD+E EL+ L C ++ GG N H
Sbjct: 1005 VETFNELMKPFMTQAEILAMISQAQEFQQLKVRDDEMEELDELKNAYCKIKPYGGSENVH 1064
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GK++ILIQ Y+S G++ +FSL SD +YI+ ++ RI RALF LR+ +S ML+ CK
Sbjct: 1065 GKVNILIQTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNMLQLCK 1124
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+R+ W L+QF + AE + KLE RG + RL++ME +++ +R LV
Sbjct: 1125 MFERRQWDFDCHLKQFPT-INAETIDKLERRGLSVYRLRDMEHRELKEWLRSNTYADLVI 1183
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHG-AAQRWWIIVQDSESDHIY 596
+ P +++ A++ PITRTVL+I + I P FTW D HG Q +W+ ++D ES++IY
Sbjct: 1184 RSAHELPLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIY 1243
Query: 597 HSELFTLTKRMAR-GETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSELF +T+++ G++Q+L T+P+ EP PPQYYIR SD+WL + +SF +L LP
Sbjct: 1244 HSELFQVTRKLVMSGQSQQLVMTIPLKEPLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLP 1303
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ TELL L+PLPV+ L N +YE+LY F+HFNPIQTQIFH LYHTDNNVLLGAPTGS
Sbjct: 1304 EHHPPLTELLPLRPLPVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGS 1363
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV-SQLGKEMVEMTGDYT 774
GKTI AE+A+ N KVVYIAPLKA+V+ER+ DW+ R S LG ++VE+TGD T
Sbjct: 1364 GKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVT 1423
Query: 775 PDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSR 834
PD+ A+ + +I++TPEKWDGISR+W +R YV+ V L+++DEIHLLG +RGP++EVIVSR
Sbjct: 1424 PDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEVIVSR 1483
Query: 835 MRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK 894
+ISS T RA+R +GLSTALANA DLA+WLG+ ++GL+NFKPSVRPVPL+VHI G+PGK
Sbjct: 1484 TNFISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGK 1543
Query: 895 FYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954
YCPRM +MN+P + AI T+SP +P ++FVSSRRQTRLTALDLI F A + P+QFL +P
Sbjct: 1544 HYCPRMATMNRPTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIP 1603
Query: 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014
E++++++L + +QNL+ L FGIGLHHAGL ++DR VEELF N KIQ+LV T+TLAWG
Sbjct: 1604 EDEIELILQNIREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWG 1663
Query: 1015 VNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074
VNLPAHLV+IKGTEY+DGK K+YVD PITD+LQMMGRAGRPQ+D G AV+LVH+ KK+F
Sbjct: 1664 VNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNF 1723
Query: 1075 YKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL 1134
YKKFLY+PFPVESSL L +H NAEIV+GT+ K+ A+ YL+WTY FRRL NP+YY L
Sbjct: 1724 YKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQL 1783
Query: 1135 EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGS 1194
+D E E +++++S LV+ +L + C+ + + PT LG I+S YYLSY T+ F
Sbjct: 1784 QDIEPENVNNFMSNLVERVVYELSAAACLVERDGCLIPTFLGRISSYYYLSYRTMKHFLE 1843
Query: 1195 NIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLL 1254
++ P + + L ++ + E+D+LPVRHNED HNE +++ RF ++ D + K LL
Sbjct: 1844 DLQPGMNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSSSWDSSYTKTFLL 1903
Query: 1255 FQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGL 1314
QAHF+R LP SDY+TD KS LD + R++QAM+D A GWLS+++ L+Q V+Q
Sbjct: 1904 LQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQAR 1963
Query: 1315 WFEQDSALWMFPCMNNDLLGTLRA-----RGISTVQQLLDIPKEN-------LQTVIGNF 1362
WF+ L + P +N D L T+ L ++ K+ L+
Sbjct: 1964 WFDGSEFLTL-PGVNEDNLDAFLNIPHDDYDYLTLPVLKELCKQEYEVLAKPLRDAFEEH 2022
Query: 1363 PVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLT-LNIRMDKMNSW 1406
+ ++++ +Q P I +++ ++ R ++ E + L++ D W
Sbjct: 2023 EIEKMYKVIQDLPEIAIQIFVEGRHMENEYAKRPLSLSDDTRGEW 2067
|
|
| POMBASE|SPBC13G1.10c mug81 "ATP-dependent RNA helicase Slh1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 3500 (1237.1 bits), Expect = 0., P = 0.
Identities = 714/1512 (47%), Positives = 1001/1512 (66%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGIS-EPNF 59
VE++Q+MIRIVGLSATLPNYL+VA FL VN GLF+F S++RP P+ Q +IG P
Sbjct: 445 VETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKI 504
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
N + E C+ KV+ +++GHQ M+FVHSRK+T+ +A+KL + + ++ +N H
Sbjct: 505 VNSN--IDEACFDKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQH 562
Query: 120 PQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLA 179
+ SL ++DV KS+NK+L ELF ++G+H+AGMLRSDR LTERLFS G+LK+L CTATLA
Sbjct: 563 EKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLA 622
Query: 180 WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKL 236
WGVNLPA+ V+IKGTQLYDP+ G + DLG+LD IFGRAGRPQF+ S IIT+HDKL
Sbjct: 623 WGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKL 682
Query: 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAY 296
++Y+ ++T Q PIES+F L DNLNAEV+LGTVTN+ EA +WLGYTYL IRM+ NPL Y
Sbjct: 683 SHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVY 742
Query: 297 GIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYS 356
GI +DE++ DP L K+R LV+ AA L +M+ +++K+G +LGRIAS++YI Y
Sbjct: 743 GIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQ 802
Query: 357 SVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNK 416
+V T N +L+ M+++++I ++S SEF I R+ E ELE+L++ P +++ SN
Sbjct: 803 TVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNT 862
Query: 417 HGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYC 476
GK+++++Q YISR ++ F+L SD Y++ + RI RALFE + R W + +L
Sbjct: 863 SGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLN 921
Query: 477 KAVDRQIWPHQHPLRQFDKELPAEILRKLEER-GA-DLDRLQEMEEKDIGALIRYTPGGR 534
K++DR+ W +HPL QFD LP ++ K+E + G+ L+ L +M ++G LI G
Sbjct: 922 KSIDRRQWSFEHPLLQFD--LPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGP 979
Query: 535 LVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDH 594
VK+++ P + ++ + P+T+ VL++ L ITP F W +HG +Q +WI V+DS
Sbjct: 980 TVKKFISKLPLLNINVDLLPLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLE 1039
Query: 595 IYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
I H E L KR + LSFT+P+ P P Q YI AVSD WL AE +S N+
Sbjct: 1040 ILHHEQLLLNKRNV-STSHLLSFTIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVF 1098
Query: 655 PQARTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAP 712
TELLDL+PLP+TAL + + E + FS FN +QTQ FH +YHTD N+ +GAP
Sbjct: 1099 HDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAP 1158
Query: 713 TGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGD 772
TGSGKT++AELA + KVVYIAP+KA+V+ER+ DW RLV +G M+E+TGD
Sbjct: 1159 TGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGD 1218
Query: 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832
PD+ A+ +A+III+TPEKWDGI+R+W SR YV+ V L+ILDEIHLLG++RGP+LE+IV
Sbjct: 1219 TNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIV 1278
Query: 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYP 892
SRM Y++SQT + VR +GLSTA+ANA DLA+WL + + GLFNF+ SVRPVPLE++I G+P
Sbjct: 1279 SRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRD-GLFNFRHSVRPVPLEIYIDGFP 1337
Query: 893 GKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
G+ YCPRM SMNKPA+ AI THSPT+PVLIFVSSRRQTRLTA DLI F ++ PR+FL
Sbjct: 1338 GRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLY 1397
Query: 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA 1012
M EE+L+M++S+V D++L+ L FGI LHHAGL + DR + EELF NNK+Q+L+ TSTLA
Sbjct: 1398 MDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLA 1457
Query: 1013 WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
WGVN PAHLVI+KGTEYYD K Y D +TD+LQM+GRAGRPQ+D G A I V + KK
Sbjct: 1458 WGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKK 1517
Query: 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132
SFYK FL+ FPVES L L +H NAEI +GTI + A+ +L+ TY +RR+ NP YY
Sbjct: 1518 SFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYY 1577
Query: 1133 GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCV-KMTEDTVEPTMLGTIASQYYLSYVTVSM 1191
G + + + + +YLS+LV F +LE S C+ ++ E+T PT LG I S YYL + T+
Sbjct: 1578 GADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIRN 1637
Query: 1192 FGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVD--NNRLDDPHV 1249
F I + ++ L +L+ ASE+D+L +RHNED N +++ ++++ N + D HV
Sbjct: 1638 FVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAHV 1697
Query: 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQM 1309
KA +L QAH +RL LP+ DYVTD +VLDQ IRIIQ+ ID+ A G+ + + L+Q
Sbjct: 1698 KAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQC 1757
Query: 1310 VMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGN----FPVS 1365
+ Q + + P +N AR + + + L ++ N F +
Sbjct: 1758 LKQAC-YPSEIYRASLPGLNAS--SEKEARDY--LNKFAGNKTDELYQMLCNDPNVFDIE 1812
Query: 1366 RLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTS-RAFALRFPKIKDEA 1424
L L +P++ +++ D L L +R ++N N FA FPK + E
Sbjct: 1813 SLVNSLISYPKMNIEVSQSSSD-----KLLLYLR--RLNQPLNPDFYIFAPLFPKPQSEG 1865
Query: 1425 WWLVLGNTNTSELYALKRISFSDRLNTH---------MELPSGITTFQGMKLVVVSDCYL 1475
+++++ ++ T EL+A++R SF+ R N M++P + +K++VV D Y
Sbjct: 1866 FFVLIIDSETQELFAIRRASFAGRRNDDSIRLSLRISMDIPPTCRN-RNVKVMVVCDGY- 1923
Query: 1476 GFEQEHSIEALV 1487
EH I ++
Sbjct: 1924 PLIYEHKIVLMI 1935
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| E7F8F4 | ASCC3_DANRE | 3, ., 6, ., 4, ., 1, 2 | 0.5369 | 0.8371 | 0.8142 | yes | no |
| F1NTD6 | ASCC3_CHICK | 3, ., 6, ., 4, ., 1, 2 | 0.5316 | 0.9906 | 0.6684 | yes | no |
| Q8N3C0 | ASCC3_HUMAN | 3, ., 6, ., 4, ., 1, 2 | 0.5308 | 0.9932 | 0.6730 | yes | no |
| F1LPQ2 | ASCC3_RAT | 3, ., 6, ., 4, ., 1, 2 | 0.5200 | 0.9899 | 0.6722 | yes | no |
| E9PZJ8 | ASCC3_MOUSE | 3, ., 6, ., 4, ., 1, 2 | 0.5310 | 0.9906 | 0.6724 | yes | no |
| E1BNG3 | ASCC3_BOVIN | 3, ., 6, ., 4, ., 1, 2 | 0.5292 | 0.9966 | 0.6756 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.824 |
| 3rd Layer | 3.6.4 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1492 | |||
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-119 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-111 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-107 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 1e-87 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 9e-85 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 3e-82 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 2e-79 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 4e-72 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 1e-60 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 3e-58 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 4e-56 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 9e-33 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 1e-29 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 6e-28 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 8e-28 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-26 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 2e-26 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 3e-26 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 9e-26 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 4e-18 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-17 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-17 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 2e-16 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 3e-16 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-14 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 5e-13 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 4e-11 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-10 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-09 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 2e-08 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 5e-08 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 2e-07 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 4e-07 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 9e-07 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 7e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 8e-05 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 7e-04 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 0.003 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 0.003 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 0.004 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 393 bits (1011), Expect = e-119
Identities = 221/728 (30%), Positives = 331/728 (45%), Gaps = 64/728 (8%)
Query: 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748
FNP Q + L +D NVL+ APTGSGKT+ A LA+L + KVVYI PLKA+
Sbjct: 33 FNPQQEAVEKGLL-SDENVLISAPTGSGKTLIALLAILSTLL-EGGGKVVYIVPLKALAE 90
Query: 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKK 808
E+ ++ + +LG + TGDY D L D+I++TPEK D ++R S ++++
Sbjct: 91 EKYEEFSR--LEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEE 146
Query: 809 VGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV 867
V L+++DEIHLLG RGP+LE IV+RMR ++ +R +GLS L NA ++ADWL
Sbjct: 147 VDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADWLNA 202
Query: 868 -GEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSS 926
+ P R VP G GK + N + + + VL+FV S
Sbjct: 203 KLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHS 262
Query: 927 RRQTRLTALDLIQFAASDETPRQFLGMP---EEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983
R++ TA L ++ + + + + L D+ L + + G+ HHA
Sbjct: 263 RKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322
Query: 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT 1043
GL +DR LVE+ F KI+VLV T TLA GVNLPA VIIK T YD K VD P+
Sbjct: 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVL 381
Query: 1044 DILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY---EPFPVESSLRDQLHDHFNAE 1100
D+LQM GRAGRP YD +G+A+IL + Y LY EP P+ES L D+L N
Sbjct: 382 DVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDEL----NLR 437
Query: 1101 IVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDS 1160
+ DAV +L T + R NP YG E L+S LE+
Sbjct: 438 TFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASL---------RYLEE- 487
Query: 1161 GCVKMTEDTVE--PTMLGTIASQYYLSYVTVSMFG---SNIGPDTSLEVFLHILSGASEY 1215
+ + D T LG + S+ Y+ + +F + + + + L+++S +
Sbjct: 488 NGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDL 547
Query: 1216 DELPVRHNEDNHNEALSQRVRFAVDN-------NRLDDPHVKANLLFQAHFSRLDLP-IS 1267
+ +R E S+ V ++ RLD+ V+ NLL QA + L
Sbjct: 548 MPIKLRERE------SSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWI 601
Query: 1268 DYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPC 1327
+ D +L+ ++ I + WL S + L + E+ + +
Sbjct: 602 NEA-DEDEILNAYGVAPGDLLRIAETAEWL--SADLLALGKA------AERLAKILGLGL 652
Query: 1328 MNNDLLGTLRAR---GISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRIQVKLRLQ 1384
L L R G+ + + L + + V + ++ L+ I L
Sbjct: 653 HVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELL 712
Query: 1385 RRDIDGEN 1392
GE
Sbjct: 713 PLTGIGER 720
|
Length = 766 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-111
Identities = 173/611 (28%), Positives = 257/611 (42%), Gaps = 38/611 (6%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLS 67
IRIVGLSATLPN EVA +L + R +P ++G L+
Sbjct: 181 IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADG-KKKTWPLLID 239
Query: 68 EICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKK 127
+ + V++SL +G Q +VFVHSRK+ KTA+KL + ++
Sbjct: 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIP 299
Query: 128 DVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAH 187
+ S +++L EL V HHAG+ R DR L E F +G +KVLV T TLA GVNLPA
Sbjct: 300 ETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR 359
Query: 188 TVVIKGTQLYDPKAGGWRDLG---MLDIFGRAGRPQFDRSGEGIII-TSHDKLAYYLRLL 243
TV+IK T+ YDPK GG D+ +L + GRAGRP +D GE II+ TSHD+L Y L
Sbjct: 360 TVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELY 418
Query: 244 TSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEV 303
P S L D LN L V +V +A +WL T R NP YG G
Sbjct: 419 IQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLRE 476
Query: 304 IADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNE 363
SL R L++ ++ + + TELG++ S YI S + + +
Sbjct: 477 EILASL------------RYLEENGLILDADWEA-LHATELGKLVSRLYIDPESAKIFRD 523
Query: 364 MLRRHMNDSE---VIEMVSHSSEFENIVVRDEEQNEL-ETLVQTLCPVEVKGGPSNKHGK 419
+L + ++ ++S + + I +R+ E +EL ++ + +
Sbjct: 524 LLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVE 583
Query: 420 ISILIQLYIS----RGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEY 475
++L+Q + WI+ I + L W +S +L
Sbjct: 584 YNLLLQALKTAARLLDWINEADED----EILNAYGVAPGDLLRIAETAEW--LSADLLAL 637
Query: 476 CKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRL 535
KA +R L K EIL E G + L E+ E +R
Sbjct: 638 GKAAERLAKILGLGLHVLRKL---EILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNA 694
Query: 536 VKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHI 595
+ L I A + P+T ++ AI G A + I V++ + ++
Sbjct: 695 GYKSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYV 754
Query: 596 YHSELFTLTKR 606
H E L
Sbjct: 755 LHEEALILAGG 765
|
Length = 766 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-107
Identities = 124/314 (39%), Positives = 202/314 (64%), Gaps = 10/314 (3%)
Query: 341 CTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETL 400
TELGRIASH+YI Y ++ET+N L+ + +++E++S +SEFE I VR+EE+ EL+ L
Sbjct: 1 PTELGRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKL 60
Query: 401 VQTLCPVEVKGGP-SNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFET 459
++ P+ VK + H K+++L+Q Y+SR + FSLVSD YI + R++RALFE
Sbjct: 61 LER-VPIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEI 119
Query: 460 CLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERG-ADLDRLQEM 518
L +GW +L LE K +++++WP PLRQ +P E+L+KLE++G + L+ L ++
Sbjct: 120 ALSKGWLSPALNALELSKMIEQRLWPSDSPLRQLPH-IPPEVLKKLEKKGISSLEDLMDL 178
Query: 519 EEKDIGALIRYTPG-GRLVKQYLGYFPSIQLSATVSPITRTV-LKIGLAITPEFTWKDHF 576
+ +++G L+ P G+ + +++ FP +++ A V PITR V L++ + +T +F W + F
Sbjct: 179 DPEELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREVSLRVEVTLTRDFEWDERF 238
Query: 577 HGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIF-EPHPPQYYIRAVS 635
HG ++ +WI+V+DS+++ + E FTL K + + +L FTVP+ P PPQ IR VS
Sbjct: 239 HGKSEGFWIVVEDSDNNELLAIERFTLNK---KKDEHELEFTVPLSGGPLPPQLTIRLVS 295
Query: 636 DSWLHAEAFYCISF 649
DSWL + +S
Sbjct: 296 DSWLGCDQEVPVSL 309
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 1e-87
Identities = 111/316 (35%), Positives = 177/316 (56%), Gaps = 9/316 (2%)
Query: 341 CTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETL 400
TELGRIAS++YI Y ++ET+N+ L+ +++E++S +SEF+ I VR E+ EL L
Sbjct: 1 PTELGRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNEL 60
Query: 401 VQTLCPVEVKGGPSN-KHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFET 459
+ P+ VK G + H K+++L+Q ++SR + F LVSD YI + RI+RAL +
Sbjct: 61 NK-RVPIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDI 119
Query: 460 CLRRGWCEMSLFMLEYCKAVDRQIWPH-QHPLRQFDKELPAEILRKLEERGA--DLDRLQ 516
L +GW +L L+ + V +++W PL+Q L ++ KLE + + L
Sbjct: 120 ALSKGWLRTALNALDLSQMVVQRLWEDSDSPLKQLPHFLIEDVYDKLELKDGSRSFELLL 179
Query: 517 EMEEKDIGALIRYTPG-GRLVKQYLGYFPSIQLSATVSPITRTV-LKIGLAITPEFTWKD 574
+M ++G + P GRL+ + L FP I++ A V PITR + L++ L ITP F W
Sbjct: 180 DMNAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVELEITPVFAWDL 239
Query: 575 -HFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRA 633
G ++ WW++V DS+++ + + TL K+ KL FTVP+ EP P Y +
Sbjct: 240 PRHKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKS-NEVKLDFTVPLSEPGPENYTVYL 298
Query: 634 VSDSWLHAEAFYCISF 649
+SDS+L + S
Sbjct: 299 ISDSYLGCDQEVSFSL 314
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 9e-85
Identities = 109/319 (34%), Positives = 181/319 (56%), Gaps = 19/319 (5%)
Query: 1172 PTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEAL 1231
PT LG IAS YY+ Y T+ F +++ P+T+L+ L ILS ASE++E+PVR E + L
Sbjct: 1 PTELGRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKL 60
Query: 1232 SQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDIC 1291
+RV V + +DDPH K NLL QA+ SRL LP V+DL +L + R+++A+ +I
Sbjct: 61 LERVPIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIA 120
Query: 1292 ANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIP 1351
+ GWLS ++ + L +M+ Q LW DS L P + ++L L +GIS+++ L+D+
Sbjct: 121 LSKGWLSPALNALELSKMIEQRLW-PSDSPLRQLPHIPPEVLKKLEKKGISSLEDLMDLD 179
Query: 1352 KENLQTVIGNFP--VSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNT 1409
E L ++GN P + + + RFPR++++ +Q I E SL + + + + W
Sbjct: 180 PEELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQ--PITREVSLRVEVTLTRDFEWDE- 236
Query: 1410 SRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTHMELPSGITTFQGMK--- 1466
RF K E +W+V+ +++ +EL A++R + + + + H EL + G
Sbjct: 237 ------RFHG-KSEGFWIVVEDSDNNELLAIERFTLNKKKDEH-ELEFTVPLSGGPLPPQ 288
Query: 1467 --LVVVSDCYLGFEQEHSI 1483
+ +VSD +LG +QE +
Sbjct: 289 LTIRLVSDSWLGCDQEVPV 307
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 3e-82
Identities = 109/311 (35%), Positives = 179/311 (57%), Gaps = 5/311 (1%)
Query: 342 TELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLV 401
T+LGRIAS++YI Y+++ T+NE+L+ M +++ ++S SSEF+ I VR EE LE L
Sbjct: 5 TDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELA 64
Query: 402 QTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCL 461
+ L + H K ++L+Q ++SR + +F+L SD Y+ + R+++A+ + L
Sbjct: 65 EKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIAL 124
Query: 462 RRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERG-ADLDRLQEMEE 520
RGW +L L + + + +WP PL Q LP EIL++LE++ L+ L E+E+
Sbjct: 125 ERGWLSTALNALNLSQMIIQALWPTDSPLLQLPH-LPEEILKRLEKKKVLSLEDLLELED 183
Query: 521 KDIGALIRYTPG-GRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA 579
++ G L+ G V + L P + + ++ PITRTVL + + +T + TW D HG
Sbjct: 184 EERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIHGK 243
Query: 580 AQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWL 639
+ WW+++ DS+ + + H E F+L + E KL FT P E + QY +R VSDS+L
Sbjct: 244 QEGWWLVIGDSDGNELLHIERFSL-NKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYL 301
Query: 640 HAEAFYCISFH 650
+ Y +SF
Sbjct: 302 GCDQEYPLSFD 312
|
Length = 312 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 2e-79
Identities = 114/322 (35%), Positives = 174/322 (54%), Gaps = 18/322 (5%)
Query: 1172 PTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEAL 1231
PT LG IAS YY+SY T+ F ++ P T+L+ L ILS ASE+ E+PVRHNE L
Sbjct: 1 PTELGRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNEL 60
Query: 1232 SQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDIC 1291
++RV V +D PH K NLL QAH SRL LP D V+DLK +L + RI++A++DI
Sbjct: 61 NKRVPIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIA 120
Query: 1292 ANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFP--CMNNDLLGTLRARGISTVQQLLD 1349
+ GWL +++ + L QMV+Q LW + DS L P + + G + + LLD
Sbjct: 121 LSKGWLRTALNALDLSQMVVQRLWEDSDSPLKQLPHFLIEDVYDKLELKDGSRSFELLLD 180
Query: 1350 IPKENLQTVIGNFP--VSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWK 1407
+ L + P +++ L+RFP+I+V+ + D + L I
Sbjct: 181 MNAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVELEI--------- 231
Query: 1408 NTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFS-DRLNTHMELPSGITTFQGM- 1465
A+ L K K E+WWLV+G+++T+EL A+KR++ + + ++L + +
Sbjct: 232 TPVFAWDLPRHKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKSNEVKLDFTVPLSEPGP 291
Query: 1466 ---KLVVVSDCYLGFEQEHSIE 1484
+ ++SD YLG +QE S
Sbjct: 292 ENYTVYLISDSYLGCDQEVSFS 313
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 4e-72
Identities = 108/325 (33%), Positives = 179/325 (55%), Gaps = 24/325 (7%)
Query: 1169 TVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHN 1228
+ PT LG IAS YY+SY T+ F + P + + L ILS +SE+D++PVRH ED
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 1229 EALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMI 1288
E L++++ ++N LDDPHVKANLL QAH SRL LP +D VL + R++QAM+
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 1289 DICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLL 1348
DI GWLS+++ ++L QM++Q LW DS L P + ++L L + + +++ LL
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPT-DSPLLQLPHLPEEILKRLEKKKVLSLEDLL 179
Query: 1349 DIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDIDGEN---SLTLNIRMDKM 1403
++ E ++G + R+++ L R P++ +++ L+ +LT+++ D
Sbjct: 180 ELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDE 239
Query: 1404 NSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTH-MELPSGITTF 1462
K E WWLV+G+++ +EL ++R S + + + ++L
Sbjct: 240 IH--------------GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPAT 285
Query: 1463 QGM---KLVVVSDCYLGFEQEHSIE 1484
+G L +VSD YLG +QE+ +
Sbjct: 286 EGNYQYTLRLVSDSYLGCDQEYPLS 310
|
Length = 312 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 1e-60
Identities = 164/516 (31%), Positives = 253/516 (49%), Gaps = 85/516 (16%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
N++L PT SGKT+ AE+ M++ + K VY+ PLKA+ E+ ++KD +LG
Sbjct: 41 NLVLAIPTASGKTLVAEIVMVNKLLREGG-KAVYLVPLKALAEEKYREFKDW--EKLGLR 97
Query: 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824
+ TGDY L DIII+T EK+D + R H +++K V L++ DEIHL+G+ +R
Sbjct: 98 VAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLR--HGSSWIKDVKLVVADEIHLIGSYDR 155
Query: 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPL 884
G LE+I++ M RA + +GLS + NA +LA+WL + RPV L
Sbjct: 156 GATLEMILTHM------LGRA-QILGLSATVGNAEELAEWLNAELV-----VSDWRPVKL 203
Query: 885 E--VHIQG-----------YPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTR 931
V QG +P NS Y A+ K L+FV++RR
Sbjct: 204 RKGVFYQGFLFWEDGKIERFP--------NSWESLVYDAV---KKGKGALVFVNTRRSAE 252
Query: 932 LTALDLIQFAASDETPRQFLGMPEE-DLQMVLSQV----TDQNLRQTLQFGIGLHHAGLN 986
AL+L + FL PE L+ + + T++ L++ L+ G+ HHAGL
Sbjct: 253 KEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306
Query: 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDIL 1046
+R L+E+ F I+V+ T TL+ G+NLPA VII+ T+ Y + D P+ +I
Sbjct: 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFG--WEDIPVLEIQ 364
Query: 1047 QMMGRAGRPQYDQHGKAVIL--VHEPKKSFYKKFLYEP------FPVESSLRDQLHDHFN 1098
QMMGRAGRP+YD+ G+A+I+ EP K + +P ES+ R Q+
Sbjct: 365 QMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVL---- 420
Query: 1099 AEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEA--EGLSSYLSRLVQNTFED 1156
A I + + + ++ V++L T+ + +D + E + L++N F D
Sbjct: 421 ALITNFGVSNFKELVNFLERTFY---------AHQRKDLYSLEEKAKEIVYFLLENEFID 471
Query: 1157 LEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMF 1192
++ ED P LG SQ Y+ +T F
Sbjct: 472 ID-------LEDRFIPLPLGIRTSQLYIDPLTAKKF 500
|
Length = 720 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 3e-58
Identities = 159/493 (32%), Positives = 232/493 (47%), Gaps = 66/493 (13%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
NV++ PT +GKT+ A A+ F + +K +YI PL+++ E+ + + LG
Sbjct: 39 NVIVSVPTAAGKTLIAYSAIYETF--LAGLKSIYIVPLRSLAMEKYEELSR--LRSLGMR 94
Query: 766 MVEMTGDY--TPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823
+ GDY PD + D++I T EK D + H + VGL++ DEIH++G E
Sbjct: 95 VKISIGDYDDPPDFIK--RYDVVILTSEKADSLIH--HDPYIINDVGLIVADEIHIIGDE 150
Query: 824 -RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPV 882
RGP LE ++S RY++ R + LS ++NA +LA WL I K + RPV
Sbjct: 151 DRGPTLETVLSSARYVNPDA----RILALSATVSNANELAQWLNASLI-----KSNFRPV 201
Query: 883 PLEVHIQGYPGKFYCP-------RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935
PL++ I Y + +NS+ K T + VL+FVSSR+ A
Sbjct: 202 PLKLGIL-YRKRLILDGYERSQVDINSLIKE------TVNDGGQVLVFVSSRKNAEDYAE 254
Query: 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995
LIQ + E+ + V D +L + L G+ HHAGL+++ R +EE
Sbjct: 255 MLIQHFPEFND----FKVSSEN-----NNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305
Query: 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRP 1055
+F N I+V+V T TLA GVNLPA LVI++ Y RY+ +I QM+GRAGRP
Sbjct: 306 MFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSN--MEIKQMIGRAGRP 363
Query: 1056 QYDQHGKAVILVHEPKK-SFYKKFLY-EPFPVESSLRDQLHDHFN--AEIVSGTIFHKED 1111
YDQ+G I P KK+L EP PV S + Q FN A I G ED
Sbjct: 364 GYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMED 423
Query: 1112 AVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVE 1171
+ + + T + + D + S L L +N F + T+
Sbjct: 424 LILFYNETLMAIQNG--------VDEIDYYIESSLKFLKENGFIK---------GDVTLR 466
Query: 1172 PTMLGTIASQYYL 1184
T LG + S Y+
Sbjct: 467 ATRLGKLTSDLYI 479
|
Length = 674 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 4e-56
Identities = 147/506 (29%), Positives = 237/506 (46%), Gaps = 72/506 (14%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
N+L PT SGKT+ AELAML K +YI PL+A+ E+ +++ +LG
Sbjct: 41 NLLAAIPTASGKTLIAELAMLK--AIARGGKALYIVPLRALASEKFEEFERF--EELGVR 96
Query: 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRN---WHSRNYVKKVGLMILDEIHLLG- 821
+ TGDY L DII++T EK D + RN W + + +++DE+HL+
Sbjct: 97 VGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPW-----LDDITCVVVDEVHLIDS 151
Query: 822 AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRP 881
A RGP LEV ++++R ++ ++ + LS + NA +LADWL + RP
Sbjct: 152 ANRGPTLEVTLAKLRRLN----PDLQVVALSATIGNADELADWLDAELV-----DSEWRP 202
Query: 882 VPLE--VHIQGYPGKFYCP----RMNSMNKPAYAAIC--THSPTKPVLIFVSSRRQT--- 930
+ L V Y G + + +K + T L+FVSSRR
Sbjct: 203 IDLREGVF---YGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGF 259
Query: 931 --RLT-----ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983
R L + A E + + + + T ++L + G HHA
Sbjct: 260 AKRAASALKKTLTAAERAELAELAEEIREVSDTE--------TSKDLADCVAKGAAFHHA 311
Query: 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT 1043
GL+ + R LVE+ F + I+V+ T TLA G+NLPA VII+ YDG P+
Sbjct: 312 GLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDG-GAGMQPIPVL 370
Query: 1044 DILQMMGRAGRPQYDQHGKAVILV--HEPKKSFYKKFLY-EPFPVESSLRDQ--LHDHFN 1098
+ QM GRAGRP D +G+AV+L ++ ++++++ +P V S L + L H
Sbjct: 371 EYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVL 430
Query: 1099 AEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLE 1158
+ I SG ++ + +L T +Y + + + L R+V + + LE
Sbjct: 431 STIASGFARTRDGLLEFLEAT-----------FYATQTDD----TGRLERVVDDVLDFLE 475
Query: 1159 DSGCVKMTEDTVEPTMLGTIASQYYL 1184
+G ++ +T+E T LG + S+ Y+
Sbjct: 476 RNGMIEEDGETLEATELGHLVSRLYI 501
|
Length = 737 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 9e-33
Identities = 108/387 (27%), Positives = 173/387 (44%), Gaps = 76/387 (19%)
Query: 706 NVLLGAPTGSGKTISAELAMLH-LFNTQSDMKVVYIAPLKAIVRERMNDWKDR-----LV 759
N+L+ + T SGKT+ ELA + L + K++++ PL A+ ++ D+K+R L
Sbjct: 234 NLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLVPLVALANQKYEDFKERYSKLGLK 291
Query: 760 SQLGKEMVEMTGDYTPDLMAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818
+ M + P ++ ADII+ T E D + R + + +G +++DEIH
Sbjct: 292 VAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLR---TGKDLGDIGTVVIDEIH 348
Query: 819 LLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877
L ERGP L+ ++ R+RY+ A +FI LS + N +LA LG ++ L++
Sbjct: 349 TLEDEERGPRLDGLIGRLRYL---FPGA-QFIYLSATVGNPEELAKKLGA-KLVLYD--- 400
Query: 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTK---PVLIFVSSRRQTRLTA 934
RPVPLE H+ + + + + T S ++F SRR+ A
Sbjct: 401 -ERPVPLERHLVFARNESEKWDI--IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELA 457
Query: 935 LDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994
+T + L+ +HAGL K+R VE
Sbjct: 458 ----------------------------DALTGKGLKAA------PYHAGLPYKERKSVE 483
Query: 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIK----GTEYYDGKTKRYVDFPITDILQMMG 1050
FA ++ +V T+ LA GV+ PA VI + G E+ + + QM+G
Sbjct: 484 RAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEW----------LSVREFQQMLG 533
Query: 1051 RAGRPQYDQHGKAVILVHEPKKSFYKK 1077
RAGRP Y GK +LV EP K ++
Sbjct: 534 RAGRPDYHDRGKVYLLV-EPGKKYHAS 559
|
Length = 830 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-29
Identities = 128/532 (24%), Positives = 203/532 (38%), Gaps = 125/532 (23%)
Query: 621 IFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIY 680
+P ++AV H+E S + R S EL D+ +P
Sbjct: 51 NKDPKEATDQVKAVDK---HSEI---ESLNVGMRLDVRLSSKELSDV-AVPDDYDMVPDA 103
Query: 681 EALYNFSHF--------NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ 732
E+ ++ + +P Q + IL +VL+ APT SGKT+ AE A+
Sbjct: 104 ESPFDLAPPAREYPFELDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAI---ALAL 159
Query: 733 SDM-KVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE---MTGDYT--PDLMALLSADII 786
D +V+Y +P+KA+ ++ D L+++ G MTGD + PD A +
Sbjct: 160 RDGQRVIYTSPIKALSNQKYRD----LLAKFGDVADMVGLMTGDVSINPD------APCL 209
Query: 787 ISTPEKWDGISRNWHSRN--YVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTE 843
+ T E I RN R ++ + ++ DE+H +G ERG + E ++ +
Sbjct: 210 VMTTE----ILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI---ILLP---- 258
Query: 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSV------RPVPLEVHIQGYPGK--- 894
VRF+ LS + NA + A+W I + +P RPVPLE + Y GK
Sbjct: 259 DHVRFVFLSATVPNAEEFAEW-----IQRVHSQPIHVVSTEHRPVPLEHFV--YVGKGLF 311
Query: 895 -----------FYCPRMNSMNKPAYAAICTHSPTK------------------------- 918
P N +
Sbjct: 312 DLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIV 371
Query: 919 ---------PVLIFVSSRR--QTRLTALDLIQFAASDETPRQFL--------GMPEEDLQ 959
P ++F SRR + L + ++E R + EED +
Sbjct: 372 NKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRE 431
Query: 960 MVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA 1019
+ L + L GI +HHAGL + LVEELF ++V+ T T A G+N+PA
Sbjct: 432 LPLQI---LEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488
Query: 1020 HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071
V+ +DG R++ + QM GRAGR D G +++ +
Sbjct: 489 RTVVFTSLSKFDGNGHRWL--SPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538
|
Length = 1041 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-28
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQSDMKVVYIAPLKAIVR 748
PIQ Q + + +VL+ APTGSGKT++ L +L L + + + +AP + +
Sbjct: 1 TPIQAQAIPAIL-SGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGPQALVLAPTRELAE 59
Query: 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL----SADIIISTPEKWDGISRNWHSRN 804
+ + K LG + +TG + A ADI++ TP + + R
Sbjct: 60 QIYEELKKLF-KILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRG-KLK 117
Query: 805 YVKKVGLMILDEIH-LLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852
+K + L++LDE H LL G LE I+SR+ + + LS
Sbjct: 118 LLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP-------PDRQILLLS 159
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 8e-28
Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 42/295 (14%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA----ARNE 64
+I+GLSAT+ N E+A++L N E+ S +RP+ L + G+ F + E
Sbjct: 171 QILGLSATVGNAEELAEWL--NAEL----VVSDWRPVKLRK---GVFYQGFLFWEDGKIE 221
Query: 65 LLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSL 124
V D++++G A+VFV++R+ K A +L +R+ T P+L
Sbjct: 222 RFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFL--------TKPELRA 273
Query: 125 IKK--DVMKSR--NKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+K+ D ++ N+ L + V HHAG+ R++R L E F EGL+KV+ T TL+
Sbjct: 274 LKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSA 333
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDK-- 235
G+NLPA V+I+ T+ Y GW D+ +L+I GRAGRP++D GE II+ + ++
Sbjct: 334 GINLPAFRVIIRDTKRY--SNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS 391
Query: 236 --LAYYLR----LLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTY 284
+ Y+ L S L E S+ + + A + V+N KE +L T+
Sbjct: 392 KLMERYIFGKPEKLFSMLSNE----SAFRSQVLALITNFGVSNFKELVNFLERTF 442
|
Length = 720 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-26
Identities = 85/351 (24%), Positives = 143/351 (40%), Gaps = 71/351 (20%)
Query: 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISA------ELAMLHLFNTQSDMKVV 738
F+ P Q + H+ NVL+ APTGSGKT +A EL L + + +
Sbjct: 19 KFTSLTPPQRYAIPEI-HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYAL 77
Query: 739 YIAPLKAI---VRERMNDWKDRLVSQLGKEMVEMTGDYTPD----LMALLSADIIISTPE 791
YI+PLKA+ +R R+ + + +LG E+ GD TP M I+I+TPE
Sbjct: 78 YISPLKALNNDIRRRLEEP----LRELGIEVAVRHGD-TPQSEKQKMLKNPPHILITTPE 132
Query: 792 KWDGISRNWHS-RNYVKKVGLMILDEIH-LLGAERGPILEVIVSRMRYISSQTERAVRFI 849
I N R ++ V +I+DEIH L ++RG L + + R+R ++ + I
Sbjct: 133 SL-AILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGD----FQRI 187
Query: 850 GLSTALANAGDLADWLGVG----EIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905
GLS + ++A +L EI + + + ++V + ++ +
Sbjct: 188 GLSATVGPPEEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEELWAALYE 244
Query: 906 PAYAAICTHSPTKPVLIFVSSRRQT-RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQ 964
+ H + LIF ++R RL
Sbjct: 245 RIAELVKKH---RTTLIFTNTRSGAERLA------------------------------- 270
Query: 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
L++ I +HH L+ + R VEE +++ +V TS+L G+
Sbjct: 271 ---FRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318
|
Length = 814 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-26
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 40/247 (16%)
Query: 10 IVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI---SEPNFAARNELL 66
+V LSAT+ N E+A +L + L DS +RPI L + G+ +F +
Sbjct: 174 VVALSATIGNADELADWL----DAELV--DSEWRPIDLRE---GVFYGGAIHFDDSQREV 224
Query: 67 SEICYKK----VVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQL 122
V+D+L +G Q +VFV SR++ A++ ++ +L
Sbjct: 225 EVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLT-----AAERAEL 279
Query: 123 SLIKKDVMKSRNKDLIELFGLAV--GV--HHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
+ + +++ + + + + V G HHAG+ R R L E F + L+KV+ T TL
Sbjct: 280 AELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339
Query: 179 AWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI--------FGRAGRPQFDRSGEGIII 230
A G+NLPA V+I+ + YD GM I GRAGRP D GE +++
Sbjct: 340 AAGLNLPARRVIIRDYRRYDG------GAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLL 393
Query: 231 T-SHDKL 236
S+D+L
Sbjct: 394 AKSYDEL 400
|
Length = 737 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 3e-26
Identities = 101/371 (27%), Positives = 160/371 (43%), Gaps = 68/371 (18%)
Query: 1 VESTQRMI----RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE 56
V S+ R + RI+ LSAT+ N E+AQ+L + S++RP+PL +GI
Sbjct: 159 VLSSARYVNPDARILALSATVSNANELAQWLNAS------LIKSNFRPVPLK---LGILY 209
Query: 57 PN-----FAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDL 111
R+++ K+ V+ G Q +VFV SRK+ A+ L+ + D
Sbjct: 210 RKRLILDGYERSQVDINSLIKETVND---GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF 266
Query: 112 EVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKV 171
+V + + +V + L E+ V HHAG+ R E +F +KV
Sbjct: 267 KVSSENN---------NVY---DDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314
Query: 172 LVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGI 228
+V T TLA GVNLPA V+++ Y GG R L ++I GRAGRP +D+ G G
Sbjct: 315 IVATPTLAAGVNLPARLVIVRDITRYG--NGGIRYLSNMEIKQMIGRAGRPGYDQYGIGY 372
Query: 229 II----TSHDKLAYYLRLLTSQLPIESQFISSLKDNLN--AEVALGTVTNVKEACAWLGY 282
I S+D YL P+ S S K N A +++G +++++ +
Sbjct: 373 IYAASPASYDAAKKYLS--GEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNE 430
Query: 283 TYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCT 342
T ++I+ ++ + Y I +L K F + T
Sbjct: 431 TLMAIQNGVDEIDYYI----------------------ESSLKFLKENGFIKGDVTLRAT 468
Query: 343 ELGRIASHFYI 353
LG++ S YI
Sbjct: 469 RLGKLTSDLYI 479
|
Length = 674 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 9e-26
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 13/202 (6%)
Query: 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743
+ F P Q + L +V+L APTGSGKT++A L L +V+ + P
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPT 63
Query: 744 KAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS---ADIIISTPEKWDGISRNW 800
+ + + + K S K + GD + + L DI+++TP + + N
Sbjct: 64 RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND 123
Query: 801 HSRNYVKKVGLMILDEIH-LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAG 859
+ V L+ILDE H LL G LE ++ + + V+ + LS
Sbjct: 124 KLS--LSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP-------KNVQLLLLSATPPEEI 174
Query: 860 DLADWLGVGEIGLFNFKPSVRP 881
+ L + + + +
Sbjct: 175 ENLLELFLNDPVFIDVGFTPLE 196
|
Length = 201 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-18
Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 61/335 (18%)
Query: 708 LLGAPTGSGKTISAELA----MLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763
LL APTGSGKT++ L + + + +YI PL+A+ + + + + +LG
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALAVDIARNLQ-APIEELG 90
Query: 764 KEM-VEM-TGDYTPDLMALLSA---DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818
+ VE TGD + A DI+++TPE + + K + +++DE H
Sbjct: 91 LPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDLRCVVVDEWH 150
Query: 819 -LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877
L G++RG LE+ ++R+R ++ +R GLS + N + L +G+
Sbjct: 151 ELAGSKRGDQLELALARLRRLAPG----LRRWGLSATIGNLEEARRVL----LGVGGAPA 202
Query: 878 SV------RPVPLEVHIQGYPGKF-YCPRMNSMNKPA-YAAICTHSPTKPVLIFVSSRRQ 929
+ + +P+ + +F + + P YA I T L+F ++R Q
Sbjct: 203 VLVRGKLPKAIPVISLLPESEERFPWAGHLGLRALPEVYAEIDQARTT---LVFTNTRSQ 259
Query: 930 TRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989
L Q + + L I LHH L+ +
Sbjct: 260 AELW------------------------FQALWEANPEFALP------IALHHGSLDREQ 289
Query: 990 RSLVEELFANNKIQVLVCTSTLAWGVN-LPAHLVI 1023
R VE A +++ +VCTS+L GV+ P LVI
Sbjct: 290 RRWVEAAMAAGRLRAVVCTSSLDLGVDFGPVDLVI 324
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-17
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764
+VLL APTGSGKT++A L +L L ++ +V+ +AP + + + K+ G
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELF--GEGI 58
Query: 765 EMVEMTG--DYTPDLMALL-SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821
++ + G L DI++ TP + +KK+ L+ILDE H L
Sbjct: 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKL--SLKKLDLLILDEAHRLL 116
Query: 822 AERGPILEVIVSRMRYISSQTERAVRFIGLS 852
+ + I + + + + LS
Sbjct: 117 NQGFGL------LGLKILLKLPKDRQVLLLS 141
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 5e-17
Identities = 80/381 (20%), Positives = 137/381 (35%), Gaps = 77/381 (20%)
Query: 700 LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759
L NV++ TGSGKT S L +L + + + P A+ ND +RL
Sbjct: 81 LIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALA----NDQAERL- 135
Query: 760 SQLGKEMVE------MTGDYTP--DLMALLSA--DIIISTPEKWDGISRNWHSR-----N 804
+L ++ TGD TP + A++ DI+++ P+ + H
Sbjct: 136 RELISDLPGKVTFGRYTGD-TPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLR 194
Query: 805 YVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR-------FIGLSTALAN 857
+K +++DE+H RG V S + + + R +R I S LAN
Sbjct: 195 NLK---YLVVDELH---TYRG----VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN 244
Query: 858 AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA-ICTHSP 916
G+ A+ L G P L ++ P + A A +
Sbjct: 245 PGEFAEEL-FGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLV 303
Query: 917 TKPV--LIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTL 974
+ L+F SR+Q L L R+ + + L V +
Sbjct: 304 RNGIQTLVFFRSRKQVELLYLSP---------RRRLVREGGKLLDAVST----------- 343
Query: 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKT 1034
+ AGL+ ++R +E F ++ ++ T+ L G+++ + +I
Sbjct: 344 ------YRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI---------A 388
Query: 1035 KRYVDFPITDILQMMGRAGRP 1055
Y + Q GRAGR
Sbjct: 389 YGYPGVSVLSFRQRAGRAGRR 409
|
Length = 851 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-16
Identities = 69/288 (23%), Positives = 102/288 (35%), Gaps = 76/288 (26%)
Query: 6 RMIRIVGLSATLPNYLEVA---QFLRVNPEMGLFFFDSSYRPIPLAQQY----------- 51
+R V LSAT+PN E A Q + P + + +RP+PL
Sbjct: 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQP---IHVVSTEHRPVPLEHFVYVGKGLFDLVD 315
Query: 52 -----------------IGISEPNFAARNELLSEICYK---------------KVVDSL- 78
SE + + + ++V+ L
Sbjct: 316 EKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD 375
Query: 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSL---IKKDVMKSRN 134
A+VF SR+ + AQ L + + ++ I +
Sbjct: 376 KDNLLPAIVFSFSRRGCEEAAQIL---STLD-----LVLTEEKERAIREIIDHAIGDLAE 427
Query: 135 KDL---------IELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLP 185
+D L + VHHAG+L + + L E LF EGL+KV+ T T A G+N+P
Sbjct: 428 EDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487
Query: 186 AHTVVIKGTQLYDPKAGGWRDLG---MLDIFGRAGRPQFDRSGEGIII 230
A TVV +D G R L + GRAGR D G I+I
Sbjct: 488 ARTVVFTSLSKFD--GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533
|
Length = 1041 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-16
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 972 QTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP-AHLVIIKGTEYY 1030
+ L + H GL+ ++R + + F N KI+VLV T G++LP LVII Y
Sbjct: 8 KELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVII-----Y 62
Query: 1031 DGKTKRYVDFPITDILQMMGRAGRP 1055
D + + +Q +GRAGR
Sbjct: 63 D------LPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-14
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGK 1033
+ H + ++R V + F +I VLV T +A G++LP V+I YD
Sbjct: 51 PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----NYD-- 104
Query: 1034 TKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066
+ + + LQ +GRAGR Q G A++L
Sbjct: 105 ----LPWSPSSYLQRIGRAGRA--GQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-13
Identities = 85/412 (20%), Positives = 156/412 (37%), Gaps = 106/412 (25%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSE 68
+ + LSAT+ N E+A+ L L +D RP+PL ++++ + + +++
Sbjct: 374 QFIYLSATVGNPEELAKKLGAK----LVLYDE--RPVPL-ERHLVFARNESEKWD-IIAR 425
Query: 69 ICYKKVVDSLRQGH--QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIK 126
+ ++ +G+ Q +VF +SR+ + A L
Sbjct: 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADAL------------------------- 460
Query: 127 KDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPA 186
+ GL +HAG+ +R ER F+ L +V TA LA GV+ PA
Sbjct: 461 ----TGK--------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA 508
Query: 187 HTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQF------------DRSGEGIIIT 231
V+ ++ A G L + + + GRAGRP + + +
Sbjct: 509 SQVI------FESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEE 562
Query: 232 SHDKLAYYLRLLTSQ-LPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMK 290
+ D++A +LL S+ P+ ++ +D +A VTN LS+ +
Sbjct: 563 TEDEVA--FKLLESEPEPVIVEY--DEEDEEENVLASAGVTNS-----------LSVIER 607
Query: 291 LNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFY-CTELGRIAS 349
+N L G + K +AL K + +K GN T GR +
Sbjct: 608 VNSLMLG---------AAFDPK---------KALSKLEEYGMIKKKGNIVRPTPYGRAVA 649
Query: 350 HFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLV 401
++ S E E + M + + + + FEN + + +E+ +
Sbjct: 650 MSFLGPSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESAL 698
|
Length = 830 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-11
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 135 KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLP-AHTVVIKG 193
+L++ G+ V H G+ + +R F+ G +KVLV T G++LP V+I
Sbjct: 4 AELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVII-- 61
Query: 194 TQLYDPKAGGWRDLGMLD-IFGRAGRP 219
YD GRAGR
Sbjct: 62 ---YDL----PWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-10
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP-AHLVIIKGTEYYDG 1032
+ H GL+ ++R + E F N K +VLV T G++LP +LVI YD
Sbjct: 6 PGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVIN-----YD- 59
Query: 1033 KTKRYVDFPITDILQMMGRAGR 1054
+ + +Q +GRAGR
Sbjct: 60 -----LPWNPASYIQRIGRAGR 76
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 42/186 (22%), Positives = 67/186 (36%), Gaps = 56/186 (30%)
Query: 46 PLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLA 105
P+ Q + + + A ELL E L++G + ++F S+K +L +L
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEH--------LKKGGKVLIFCPSKK----MLDELAELL 48
Query: 106 RRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165
R+ G+ V H + +R + F
Sbjct: 49 RKP---------------------------------GIKVAALHGDGSQEEREEVLKDFR 75
Query: 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD-IFGRAGRPQFDRS 224
EG + VLV T +A G++LP +VVI YD GRAGR +
Sbjct: 76 EGEIVVLVATDVIARGIDLPNVSVVI----NYDL----PWSPSSYLQRIGRAGR--AGQK 125
Query: 225 GEGIII 230
G I++
Sbjct: 126 GTAILL 131
|
Length = 131 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-08
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 42/197 (21%)
Query: 686 FSHFNPIQTQ-IFHILYHTDNNVLLGAPTGSGKTISAELAMLH-LFNTQSDMK------V 737
F F P Q I I H NVL+ +PTGSGKT++A LA++ LF + +
Sbjct: 30 FGTFTPPQRYAIPLI--HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYC 87
Query: 738 VYIAPLKAIVRERMNDWKDRL----------VSQLGKEMVEM-----TGDYTPD---LMA 779
+Y++PL+A+ ND L + G+E+ E+ TGD + M
Sbjct: 88 LYVSPLRALN----NDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML 143
Query: 780 LLSADIIISTPEKWDGISRNWHS---RNYVKKVGLMILDEIH-LLGAERGPILEVIVSRM 835
I+I+TPE I N S R ++ V +I+DEIH L +RG L + + R+
Sbjct: 144 KKPPHILITTPESL-AILLN--SPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERL 200
Query: 836 RYISSQTERAVRFIGLS 852
+ IGLS
Sbjct: 201 EEL---AGGEFVRIGLS 214
|
Length = 876 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-08
Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 53/230 (23%)
Query: 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQY-IGISEPNFA-ARN 63
RI GLSAT+ EVA+FL + + A++ I + P +
Sbjct: 183 DFQRI-GLSATVGPPEEVAKFLVGFGDPCEIV------DVSAAKKLEIKVISPVEDLIYD 235
Query: 64 ELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLS 123
E L Y+++ + +++ ++F ++R + A +L
Sbjct: 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRL---------------------- 273
Query: 124 LIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVN 183
K D+IE VHH + R R E EG LK +V T++L G++
Sbjct: 274 -------KKLGPDIIE-------VHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319
Query: 184 LPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233
+ +VI QL PK R L GRAG + +GIII
Sbjct: 320 IGDIDLVI---QLGSPK-SVNR---FLQRIGRAGH-RLGEVSKGIIIAED 361
|
Length = 814 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-07
Identities = 94/401 (23%), Positives = 165/401 (41%), Gaps = 92/401 (22%)
Query: 711 APTGSGKTISAEL-AMLHLFNTQSD----------MKVVYIAPLKAI------------- 746
APTGSGKT++A L A+ LF + +++YI+P+KA+
Sbjct: 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62
Query: 747 ----VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS---ADIIISTPEKWDGI--S 797
R R + + L + TGD + L+ DI+I+TPE + S
Sbjct: 63 GIADERRRRGETEVNLRVGI------RTGDTPAQERSKLTRNPPDILITTPESLYLMLTS 116
Query: 798 RNWHSRNYVKKVGLMILDEIH-LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856
R +R ++ V +I+DE+H + G++RG L + + R+ + A R IGLS +
Sbjct: 117 R---ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT--SAQR-IGLSATVR 170
Query: 857 NAGDLADWLGVGE--IGLFNFKPSVRP-----VPLE-----VHIQGYPGK-FYCPRMNSM 903
+A D+A +LG G+ + + N P VP+ + G+ + R S+
Sbjct: 171 SASDVAAFLG-GDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSI 229
Query: 904 NKPAYAAICTHS-PTKPVLIFVSSRRQT-----RLTALDLIQFAASDETPR---QFLGMP 954
I + ++F +SR RL L + S F
Sbjct: 230 WPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFEST- 288
Query: 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014
S T ++ + F HH ++ + R++ E+ + +++ +V TS+L G
Sbjct: 289 --------SGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELG 340
Query: 1015 VNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAG 1053
+++ A ++I+ V P + LQ +GRAG
Sbjct: 341 IDMGAVDLVIQ------------VATPLSVASGLQRIGRAG 369
|
Length = 1490 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 74/394 (18%), Positives = 123/394 (31%), Gaps = 85/394 (21%)
Query: 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762
T+ ++ PTG+GKT+ A A+ L + + P K ++ W + L L
Sbjct: 54 TERRGVIVLPTGAGKTVVAAEAIAELKR-----STLVLVPTKELLD----QWAEALKKFL 104
Query: 763 GK--EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYV-KKVGLMILDEIHL 819
E+ G L A + ++T ++R ++ + GL+I DE+H
Sbjct: 105 LLNDEIGIYGGGEK----ELEPAKVTVAT---VQTLARRQLLDEFLGNEFGLIIFDEVHH 157
Query: 820 LGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA-----NAGDLADWLG-------- 866
L A R I A +GL+ GDL D +G
Sbjct: 158 LPAPSY----------RRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSL 207
Query: 867 ---VGEIGLFNFK---PSVRPVPLEVHI-QGYPGKFYCPRMNSMNKPAY---AAICTHSP 916
+ E L +K V E +F A I S
Sbjct: 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASE 267
Query: 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG-MPEEDLQMVLSQVTDQNLRQTLQ 975
K + V + FA+ E + + ++ T + R+ +
Sbjct: 268 RK--IAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAIL 325
Query: 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTK 1035
E F I+VLV L GV++P V+I ++
Sbjct: 326 -------------------ERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR---PTGSR 363
Query: 1036 RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069
R +Q +GR RP + + L +
Sbjct: 364 RLF-------IQRLGRGLRP-AEGKEDTLALDYS 389
|
Length = 442 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-07
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 136 DLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQ 195
L+ G+ V H G+ + +R F G KVLV T G++LP +VI
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVI---- 56
Query: 196 LYDPKAGGWRDLGMLD-IFGRAGR 218
YD + GRAGR
Sbjct: 57 NYDL----PWNPASYIQRIGRAGR 76
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 22/85 (25%)
Query: 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP-----AHLVIIKGTE-Y 1029
G +HAGL++++R V++ F N++I+V+V T+ G++ P H + E Y
Sbjct: 255 ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESY 314
Query: 1030 YDGKTKRYVDFPITDILQMMGRAGR 1054
Y Q GRAGR
Sbjct: 315 Y----------------QETGRAGR 323
|
Length = 590 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-05
Identities = 56/269 (20%), Positives = 89/269 (33%), Gaps = 58/269 (21%)
Query: 10 IVGLSATLPNYLEVAQFLRVNPEMGLFFFDS----------SYRPIPLAQQYIGISEPNF 59
I+ SATL N E A+ L + + + P P+ + I
Sbjct: 235 IICTSATLANPGEFAEEL-FGRDFEVPVDEDGSPRGLRYFVRREP-PIRELAESIRRSAL 292
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
A L + +R G Q +VF SRK
Sbjct: 293 AELATLAA--------LLVRNGIQTLVFFRSRK-----------QVELLY--------LS 325
Query: 120 PQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLA 179
P+ L+++ AV + AG+ R +R E F EG L ++ T L
Sbjct: 326 PRRRLVREG----------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALE 375
Query: 180 WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL-AY 238
G+++ + VI + GRAGR + +++ D L +Y
Sbjct: 376 LGIDIGSLDAVIAYGYPGVSVLSFRQR------AGRAGRR--GQESLVLVVLRSDPLDSY 427
Query: 239 YLRLLTSQLPIESQFISSLKDNLNAEVAL 267
YLR L + S++ + N E L
Sbjct: 428 YLRHPEELLETGFGPVESVRVDDNNEYLL 456
|
Length = 851 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763
N L+ PTG GKT A + + + KV+++AP K +V + + V+ +
Sbjct: 29 FKNTLVVLPTGLGKTFIAAMVIANRL-RWFGGKVLFLAPTKPLVLQHAEFCRK--VTGIP 85
Query: 764 K-EMVEMTGDYTPDLMALL--SADIIISTPEKWDGISRN--WHSRNYVKKVGLMILDEIH 818
+ E+ +TG+ P+ L + ++TP+ + N R + V L+I DE H
Sbjct: 86 EDEIAALTGEVRPEEREELWAKKKVFVATPQ----VVENDLKAGRIDLDDVSLLIFDEAH 141
|
Length = 542 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF 1040
G++ K++ + + F + VLV TS G+++P ++I +Y+ V
Sbjct: 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI----FYEP-----VPS 455
Query: 1041 PITDILQMMGRAGRPQYDQHGKAVILVHE 1069
I I Q GR GR + G+ V+LV E
Sbjct: 456 EIRSI-QRKGRTGR---KRKGRVVVLVTE 480
|
Length = 542 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 38/146 (26%)
Query: 663 ELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQ-IFHILYHTDNNVLLGAPTGSGKTISA 721
E L L P L IY F PIQ + I +L D V+ A TGSGKT +
Sbjct: 2 EELGLSPE----LLRGIYA--LGFEKPTPIQARAIPPLLSGRD--VIGQAQTGSGKTAAF 53
Query: 722 ELAML-HLFNTQS--DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM--------- 769
+ +L L + + + +AP RE L Q+ + ++
Sbjct: 54 LIPILEKLDPSPKKDGPQALILAP----TRE--------LALQIAEVARKLGKHTNLKVV 101
Query: 770 --TG--DYTPDLMALLS-ADIIISTP 790
G + L I+++TP
Sbjct: 102 VIYGGTSIDKQIRKLKRGPHIVVATP 127
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 964 QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP----- 1018
QVT Q L G +HAGL R V F ++IQV+V T G+N P
Sbjct: 241 QVTAS--LQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFV 298
Query: 1019 AHLVIIKGTE-YYDGKTKRYVDFPITDILQMMGRAGR 1054
H + K E YY Q GRAGR
Sbjct: 299 IHYSLPKSMESYY----------------QESGRAGR 319
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1492 | |||
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.98 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.98 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.98 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.97 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.97 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.97 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.96 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.96 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.96 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.95 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.95 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.95 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.95 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.94 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.94 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.94 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.94 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.94 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.94 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.93 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.93 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.92 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.92 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.92 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.91 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.91 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.91 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.9 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.89 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.88 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.88 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.88 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.87 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.87 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.87 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.86 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.86 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.85 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.85 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.84 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.84 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.84 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.83 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.83 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.83 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.82 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.82 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.82 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.82 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 99.81 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.81 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.81 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.81 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.8 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.8 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.8 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.79 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.79 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.79 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.79 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.79 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.79 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.78 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.78 | |
| PTZ00110 | 545 | helicase; Provisional | 99.77 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.76 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.76 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.76 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.76 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.76 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.75 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.75 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.74 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.74 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.74 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.71 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.71 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.71 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 99.69 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.68 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.68 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.67 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.66 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.66 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.66 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.66 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.65 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.64 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.64 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.64 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.63 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.63 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.62 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.61 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.61 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.59 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.59 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.58 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.58 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.57 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.56 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.56 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.56 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.55 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.54 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.54 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.53 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.53 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.52 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.51 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.5 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.49 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.48 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.48 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.47 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.45 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.45 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.45 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.44 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.44 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.44 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.43 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.42 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.42 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.41 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.41 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.4 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.4 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.4 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.4 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.39 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.38 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.37 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.37 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.36 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.35 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.34 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.34 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.34 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.32 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.32 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.32 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.32 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.31 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.31 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.28 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.28 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.27 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.27 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.25 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.24 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.22 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.21 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.21 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.21 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.2 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.15 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.13 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.1 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.1 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.09 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.09 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.08 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.04 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.03 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.02 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.01 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.0 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 99.0 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.99 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 98.99 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.97 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.95 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 98.95 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 98.92 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.88 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 98.87 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.86 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 98.86 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.84 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.83 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.75 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 98.66 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.64 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.64 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.62 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.62 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 98.56 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.53 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.41 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.38 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 98.37 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 98.33 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 98.23 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.19 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.18 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.15 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.07 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.03 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.98 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 97.96 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.95 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.92 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.88 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 97.85 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.77 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.77 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.71 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.66 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 97.6 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.53 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.53 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.53 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.46 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.37 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.37 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.36 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 97.34 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 97.33 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.16 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.14 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.12 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.09 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.07 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 97.05 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 96.98 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.94 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.88 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.84 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 96.8 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.7 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.69 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.68 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.56 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 96.53 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.51 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.47 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.47 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.45 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.41 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.36 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.3 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.28 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 96.23 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 96.22 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.19 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.1 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.09 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 96.0 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.98 | |
| PRK06526 | 254 | transposase; Provisional | 95.81 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.81 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.75 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 95.64 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.61 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.61 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.57 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 95.53 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| PRK08181 | 269 | transposase; Validated | 95.46 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 95.44 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 95.39 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 95.27 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 95.25 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.22 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 95.15 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 95.04 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.02 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 95.02 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.99 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.9 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 94.87 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 94.81 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.7 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 94.63 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 94.58 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 94.58 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 94.52 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 94.5 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 94.46 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 94.44 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 94.43 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 94.43 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.37 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 94.33 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.3 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 94.29 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 94.26 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.25 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 94.22 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 94.2 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 94.18 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 94.17 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.04 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 94.02 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 93.95 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 93.9 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 93.86 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 93.83 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 93.76 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 93.72 | |
| PRK08116 | 268 | hypothetical protein; Validated | 93.7 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 93.64 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.64 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.64 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 93.62 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 93.51 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 93.43 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 93.39 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 93.36 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 93.32 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 93.29 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 93.24 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.23 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 93.21 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 93.16 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 93.16 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.16 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 93.08 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 92.96 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 92.91 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.9 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 92.89 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 92.88 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 92.79 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 92.74 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 92.72 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 92.7 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 92.67 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 92.66 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 92.64 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 92.6 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 92.56 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 92.54 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.52 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 92.44 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 92.43 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 92.32 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 92.26 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.23 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 92.22 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 92.16 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 92.05 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 92.04 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 92.04 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 92.03 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 91.99 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 91.97 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 91.96 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 91.92 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 91.87 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 91.86 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 91.84 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 91.83 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 91.81 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 91.79 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 91.77 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 91.69 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 91.67 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 91.53 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 91.52 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 91.46 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 91.34 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 91.23 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 91.16 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 91.14 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 91.04 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 91.03 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 91.0 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 90.93 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 90.91 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 90.81 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 90.78 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 90.68 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 90.64 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 90.59 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 90.5 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 90.48 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 90.4 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 90.4 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 90.26 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 90.24 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 90.22 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 90.08 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 90.06 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 89.91 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 89.91 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 89.86 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 89.84 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 89.83 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 89.83 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 89.83 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 89.79 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 89.76 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 89.68 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 89.68 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 89.67 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 89.62 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 89.53 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 89.53 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 89.49 | |
| PF05729 | 166 | NACHT: NACHT domain | 89.45 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 89.44 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 89.36 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 89.24 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 89.21 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 89.16 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 89.13 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 89.04 |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-187 Score=1650.45 Aligned_cols=1147 Identities=48% Similarity=0.867 Sum_probs=1089.3
Q ss_pred CCCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 2 ESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
++...++|+||||||+||++|+|.||++. +.++|+|+++|||+||.+.|+|+.+++..++...||+.||++++++..+
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~-~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk- 546 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVD-PEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK- 546 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccC-cccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC-
Confidence 45677899999999999999999999999 5999999999999999999999999988888999999999999999655
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+|+||||||||+|-++|+.|++.+.+.+.+..|.+.+..+.++++.++....+.+|++++.+|+|+|||||.+.+|..+|
T Consensus 547 ~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~E 626 (1674)
T KOG0951|consen 547 NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVE 626 (1674)
T ss_pred CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCc---hhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLG---MLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~---~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
++|++|+++|+|||.|||||||+|+++|||+||+.|||++|.|++++ .+||.||||||++|+.|+++++++..++.+
T Consensus 627 dLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 627 DLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred HHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhh
Confidence 99999999999999999999999999999999999999999998765 667999999999999999999999999999
Q ss_pred HHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHH
Q 043190 239 YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVT 318 (1492)
Q Consensus 239 ~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~ 318 (1492)
|.++++++.||||++...|.+.+||||+.| +++.+|+.+|+.+||+|+||.+||..||++++. +|+.+...+.++++
T Consensus 707 yls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~--~d~~le~~r~~lvh 783 (1674)
T KOG0951|consen 707 YLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEA--SDRLLEQRRADLVH 783 (1674)
T ss_pred hHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCccc--chHHHHHHHhhhHH
Confidence 999999999999999999999999999999 999999999999999999999999999999886 38888888899999
Q ss_pred HHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHH
Q 043190 319 DAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELE 398 (1492)
Q Consensus 319 ~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~ 398 (1492)
+|+..|+++|+|.++..++.+++|++|+++|+|||.+.+|..|++.|++.+++.+++.+++++.||+.+.+|.+|+.+|.
T Consensus 784 sa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~ 863 (1674)
T KOG0951|consen 784 SAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELA 863 (1674)
T ss_pred HHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 043190 399 TLVQTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKA 478 (1492)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~ 478 (1492)
.+... .|+|+++....+..|+|+|||+|+|++.++.++|..|+.+|-|+|.|++||++||++.+||++.+..++.+|||
T Consensus 864 ~l~~~-vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~ 942 (1674)
T KOG0951|consen 864 KLLER-VPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKM 942 (1674)
T ss_pred hhccc-CCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhH
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEEEEEeecccc
Q 043190 479 VDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITRT 558 (1492)
Q Consensus 479 i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~ 558 (1492)
+++++|+.+.||+||+ +++.+.++.|+++.+.|.++.++++.++.++++.+++|.-++.++++||++.+...+|||+++
T Consensus 943 v~~r~w~~~~plrqf~-~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vqpitr~ 1021 (1674)
T KOG0951|consen 943 VEKRMWPTQTPLRQFK-GCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQPITRS 1021 (1674)
T ss_pred hhhhcccccCchhhcC-CCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeeeeeeee
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcc
Q 043190 559 VLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSW 638 (1492)
Q Consensus 559 ~~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~w 638 (1492)
.+++.+.++|+|.|+.++||..|.||++|+|.+++.|+|++.|.++++ .+.+.|++|+++| ||+|+++++|++|
T Consensus 1022 ~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~-----~~~v~ft~~~~~~-pP~~fi~lvSd~w 1095 (1674)
T KOG0951|consen 1022 VYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK-----EHTVNFTVPLFEP-PPQYFIRLVSDRW 1095 (1674)
T ss_pred EEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC-----ceEEEEEeecCCC-CCceEEEEeeccc
Confidence 999999999999999999999999999999999999999999999876 7899999999999 9999999999999
Q ss_pred cccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCch
Q 043190 639 LHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKT 718 (1492)
Q Consensus 639 l~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT 718 (1492)
+++++..|++|.++++|.+.+++|+++|++|+|++++.++.+..+|.. +||+|.|+++.++++++++++++|+|||||
T Consensus 1096 l~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~--~n~iqtqVf~~~y~~nd~v~vga~~gsgkt 1173 (1674)
T KOG0951|consen 1096 LHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQD--FNPIQTQVFTSLYNTNDNVLVGAPNGSGKT 1173 (1674)
T ss_pred cCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccc--cCCceEEEEeeeecccceEEEecCCCCchh
Confidence 999999999999999999999999999999999999999999998743 399999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhh
Q 043190 719 ISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISR 798 (1492)
Q Consensus 719 ~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~ 798 (1492)
.|+++++++ .....+++|++|.-+.+..++..|.++|+...|..+..++|+...+.......+|+|+||++|+.+ +
T Consensus 1174 ~~ae~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q 1249 (1674)
T KOG0951|consen 1174 ACAELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q 1249 (1674)
T ss_pred HHHHHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHH-h
Confidence 999999988 345789999999999999999999999999999999999999999998889999999999999877 2
Q ss_pred cccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCC
Q 043190 799 NWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPS 878 (1492)
Q Consensus 799 ~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~ 878 (1492)
..+.+++.|.||.|++++..|+.++.+++ ++++..+..+++|++++|..+.|+.++ +|....++++|.+.
T Consensus 1250 ------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~ 1319 (1674)
T KOG0951|consen 1250 ------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPS 1319 (1674)
T ss_pred ------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcc
Confidence 36789999999999999889999999999 999999999999999999999999998 88999999999999
Q ss_pred ccccCcEEEEeccCCccccccccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 879 VRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 879 ~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
.||+|++.++.++...++..++.+|.++.+..+..+ ..+++.+||+++++.|..+|..+..++..+.. .+
T Consensus 1320 ~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~--~~------- 1390 (1674)
T KOG0951|consen 1320 VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP--DY------- 1390 (1674)
T ss_pred cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH--HH-------
Confidence 999999999999999999999999999999998876 56789999999999999999988877654311 11
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCcc
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~ 1037 (1492)
+..... -.+..+++.+..||+ |-+++..+...+-..|..|.++|+|...- .+|+-..+..||+.||++||++.+.|
T Consensus 1391 l~~~~e-~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~ 1466 (1674)
T KOG0951|consen 1391 LLSELE-ECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSY 1466 (1674)
T ss_pred HHHHHh-cchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeeccccccc
Confidence 111111 156788899999999 99999999999999999999999999888 99999999999999999999999999
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHh
Q 043190 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLS 1117 (1492)
Q Consensus 1038 ~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~ 1117 (1492)
.|||+++++||.|+|.| .|.|++++..+++++|++|+.+++|+||.|...|.|++|+||+.++|.+++|+++|++
T Consensus 1467 ~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt 1541 (1674)
T KOG0951|consen 1467 EDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLT 1541 (1674)
T ss_pred ccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999998 4799999999999999999999999999999999999999999999999999999999
Q ss_pred hchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccC
Q 043190 1118 WTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197 (1492)
Q Consensus 1118 ~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~ 1197 (1492)
|+|+|+|+..||+||++++...+++++++++++++++..|+...||+++...- .+|.|+++||+++-|+..|..++.
T Consensus 1542 ~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~---~l~~Ias~y~i~y~ti~~f~~~L~ 1618 (1674)
T KOG0951|consen 1542 WSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD---SLGMIASYYYISYITIERFSSSLS 1618 (1674)
T ss_pred HHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc---ccchhhhhceeeeEeeehhhhhhh
Confidence 99999999999999999999999999999999999999999999999976543 399999999999999988876554
Q ss_pred C
Q 043190 1198 P 1198 (1492)
Q Consensus 1198 ~ 1198 (1492)
.
T Consensus 1619 ~ 1619 (1674)
T KOG0951|consen 1619 E 1619 (1674)
T ss_pred h
Confidence 3
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-146 Score=1291.99 Aligned_cols=957 Identities=55% Similarity=0.920 Sum_probs=904.5
Q ss_pred CCCCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 1 ~~~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
||++|+.+||||||||+||++|+|.||++++..++|.|+..||||||.+.++|.+.++.......+++.+|+++.+.+.+
T Consensus 269 vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 269 VESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred HHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999987766666777899999999999999
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
|+|++||||+|++|.++|+.|.+.+...+..+.|.... ++++|++++.+|+|+|||||.+++|..+
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~--------------~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP--------------RNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh--------------hhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 99999999999999999999999988887777775422 4678999999999999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccC---chhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDL---GMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~---~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
|+.|..|.++|||||+||||||||||+.|||+||+.||++.|++.+. +.+|++|||||||||..|.++++|+.++++
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 99999999999999999999999999999999999999999887775 467799999999999999999999999999
Q ss_pred HHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 238 ~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
+|.+++.++.||||+|...|.|||||||++|+|+++++|++|+++||+|+||.+||.+||+..+++..||.+..+++++|
T Consensus 495 ~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~ 574 (1230)
T KOG0952|consen 495 HYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELC 574 (1230)
T ss_pred HHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHH
Q 043190 318 TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNEL 397 (1492)
Q Consensus 318 ~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l 397 (1492)
..++..|.+..||.+|.+++.|.+|++||+||+|||.++||+.|++..++.+++.++|.++|+|.||+.+++|++|+++|
T Consensus 575 ~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l 654 (1230)
T KOG0952|consen 575 LVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKEL 654 (1230)
T ss_pred HHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 043190 398 ETLVQTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477 (1492)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~ 477 (1492)
++|+.+.+....... ...|+++|+|+||++..+..|+|.+|..|+.+|+.||.+++++++...+|...+.+++.|||
T Consensus 655 ~el~~~~~~~~~~~~---~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k 731 (1230)
T KOG0952|consen 655 KELNEDSCEKYPFGG---EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCK 731 (1230)
T ss_pred HHHHhcccccccccc---cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999998332211111 28999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEEEEEeeccc
Q 043190 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITR 557 (1492)
Q Consensus 478 ~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~ 557 (1492)
||+.++|....|++|++ .+-. ++ ++++. ++..+..+++++++.+.+.+ +++++.+|.+.+++..+|+++
T Consensus 732 ~ier~mw~~~~~l~qf~-~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~ 800 (1230)
T KOG0952|consen 732 RIERRMWDFFIPLKQFT-LLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITR 800 (1230)
T ss_pred HHHHHHHhhhhhhhcCC-cccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchh
Confidence 99999999999999999 5444 33 33333 67788889999999877777 899999999999999999999
Q ss_pred ceEEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCc
Q 043190 558 TVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDS 637 (1492)
Q Consensus 558 ~~~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~ 637 (1492)
+++++.+.++|+|.|+...||....+ +|++|++...++|.+.+.+.++..+. .+.+.|++|+.+|+|++++.+..|+.
T Consensus 801 ~vlri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~-s~~lvf~ipis~pLps~~~~~~~s~~ 878 (1230)
T KOG0952|consen 801 NVLRIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNE-SQLLVFTIPISDPLPSQIRHRAVSDN 878 (1230)
T ss_pred hhheeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhh-hhheeEEeecccCCccceEEeeeccc
Confidence 99999999999999999999987777 99999999999999999999888775 88899999999999999999999999
Q ss_pred ccccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCc
Q 043190 638 WLHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717 (1492)
Q Consensus 638 wl~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGK 717 (1492)
|++.+...+.+++++++|...++.++++++.|+|...|....++.++. .++|+|.+.|...++.+.++++.+|||+||
T Consensus 879 ~l~~e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~--~fn~~q~~if~~~y~td~~~~~g~ptgsgk 956 (1230)
T KOG0952|consen 879 WLGAETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK--YFNPIQTQIFHCLYHTDLNFLLGAPTGSGK 956 (1230)
T ss_pred ccCCceeccccccceeccccccccccccccCCCcchhhccccHHHhhc--ccCCccceEEEEEeecchhhhhcCCccCcc
Confidence 999999999999999999999999999999999999999998888876 799999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhh
Q 043190 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGIS 797 (1492)
Q Consensus 718 T~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~ 797 (1492)
|.+|+++++..+...++.+++|++|.++|+.+..++|..++... |.++..++|+...+......++++|+||++|+...
T Consensus 957 t~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~ 1035 (1230)
T KOG0952|consen 957 TVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS 1035 (1230)
T ss_pred hhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcc
Confidence 99999999999999999999999999999999999999988777 99999999999999888889999999999999999
Q ss_pred hcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCC
Q 043190 798 RNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 798 ~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~ 877 (1492)
|.|..+..+++++++|+||.|+++++|||+++.+.+++..+..+++..+|++++|..+.|+.++++|++..+. ++|.+
T Consensus 1036 Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~ 1113 (1230)
T KOG0952|consen 1036 RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRP 1113 (1230)
T ss_pred ccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCc
Confidence 9999999999999999999999999999999999999998888899999999999999999999999999986 89999
Q ss_pred CccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 878 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
..||+|++.++.++++.++++++..|+++.+..++.+++..|+|||+.++++....|..|...+....++..|++.+..+
T Consensus 1114 svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e 1193 (1230)
T KOG0952|consen 1114 SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELE 1193 (1230)
T ss_pred ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
++..+..+.|..|+.++++|++.||+|+...||..
T Consensus 1194 ~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~ 1228 (1230)
T KOG0952|consen 1194 LEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKI 1228 (1230)
T ss_pred HHHHHHHhcccchhhhhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999998854
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-103 Score=937.49 Aligned_cols=792 Identities=32% Similarity=0.537 Sum_probs=712.7
Q ss_pred chhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC---------CCceEEEEcccHHHH
Q 043190 677 NNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---------SDMKVVYIAPLKAIV 747 (1492)
Q Consensus 677 ~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~---------~~~~~l~i~P~r~La 747 (1492)
.+...+++|...||++|+.+.++++....|+++|||||+|||.++++.|++.+..+ ...+++|++|+++|+
T Consensus 298 ~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 298 KWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred chhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 34445677999999999999999998889999999999999999999999988654 245999999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccH
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~ 827 (1492)
+++...+.+++..+ |++|...|||..........++|+|||||+|+.+.|+...+...+-++++||||+|++.++||+.
T Consensus 378 qE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpv 456 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPV 456 (1674)
T ss_pred HHHHHHHHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchH
Confidence 99999999999887 99999999999988888899999999999999999998888888899999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhH
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPA 907 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 907 (1492)
++.++.|...-........|++|+|||+||++|++.|++++..++|.|++++||+|+...+.++..+....+.+.|+..+
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 99999999887777788999999999999999999999999999999999999999999999999888888889999999
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC---hHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP---EEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
|+.+..+...+++||||.+|+++-++|+.++..+...+....|+..+ .+-+.......++..|++++++|+++||+|
T Consensus 537 yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 99999998889999999999999999999997766555444444432 233334456678899999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
|++.+|..+++.|++|+++|+|+|.+++||||+|+.+|||.||+.||+..++|.++++.+.+||.|||||+++|..|..+
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcc-cHH
Q 043190 1065 ILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAE-GLS 1143 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~-~~~ 1143 (1492)
+.+..++..+|..++++.+|+||++...|.+.+|+|++.| +++..|+++|+.+||+|.|+.+||..|+..+...+ .+.
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le 775 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLE 775 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999876543 345
Q ss_pred HHHHHHHHHHHHHhHHCCCceecCCc--cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCC
Q 043190 1144 SYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVR 1221 (1492)
Q Consensus 1144 ~~l~~~i~~~l~~L~~~~~i~~~~~~--~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R 1221 (1492)
....+++++|...|.++|+|..+... +++|++|+++|+||+.+.++..+.+.+++.++.-++..+++.+.||+.+++|
T Consensus 776 ~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr 855 (1674)
T KOG0951|consen 776 QRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVR 855 (1674)
T ss_pred HHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCcc
Confidence 55568999999999999999988644 9999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHH
Q 043190 1222 HNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSI 1301 (1492)
Q Consensus 1222 ~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~ 1301 (1492)
.+|+..++.|...+|+|+. ..+++|..|+++|+|+|+|++++....+..|+.+|-+.+-|+.+|+.+|+..+||...+.
T Consensus 856 ~~ek~el~~l~~~vpIpir-e~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~ 934 (1674)
T KOG0951|consen 856 EEEKMELAKLLERVPIPIR-ENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQ 934 (1674)
T ss_pred HHHHHHhhhhcccCCcCch-hccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHH
Confidence 9999999999999999984 568899999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC-CchHHHHHHHhcCCCceEEE
Q 043190 1302 TCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG-NFPVSRLHQDLQRFPRIQVK 1380 (1492)
Q Consensus 1302 ~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~-~~~~~~i~~~~~~~P~i~i~ 1380 (1492)
-++.+|+|+.+++|+. ..||+|+|++..+.++.+.++.+ .+..+..+++.++..+++ ++.+.-+..++.+||++.+.
T Consensus 935 ~~l~~ck~v~~r~w~~-~~plrqf~~~~~ev~~~lE~k~~-~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~ 1012 (1674)
T KOG0951|consen 935 MALNLCKMVEKRMWPT-QTPLRQFKGCPKEVLRRLEKKEL-PWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVS 1012 (1674)
T ss_pred HHHHhHhHhhhhcccc-cCchhhcCCCCHHHHHHHHhccC-cchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceee
Confidence 9999999999999998 99999999999999999988776 467888888777777765 55678888899999999999
Q ss_pred EEEEeccCCCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCC-cceEEEEecCCC
Q 043190 1381 LRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSD-RLNTHMELPSGI 1459 (1492)
Q Consensus 1381 ~~~~~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~-~~~~~~~~p~~~ 1459 (1492)
..+++ ...+.+.+.++++.... ++..+|. -.|.||+++.|....+++.+.-.-+++ ...+.|++|...
T Consensus 1013 ~~vqp---itr~~~~~~l~i~~~f~--wd~~vh~------~~e~F~i~ved~dge~il~~e~~~~~k~~~~v~ft~~~~~ 1081 (1674)
T KOG0951|consen 1013 AHVQP---ITRSVYRVELTITPDFD--WDDKVHG------SVEPFWIIVEDTDGEKILHHEFFLLKKKEHTVNFTVPLFE 1081 (1674)
T ss_pred eeeee---eeeeEEEEEEEEeeccc--chhhhcc------cccceEEEEEccCccceeeeeeEEeccCceEEEEEeecCC
Confidence 88887 33455555555555432 2222332 357899999999999999876665533 456889999876
Q ss_pred CCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1460 TTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1460 ~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
+...|.+.++||.|+|....+++.+
T Consensus 1082 -~pP~~fi~lvSd~wl~s~~~~Pvsf 1106 (1674)
T KOG0951|consen 1082 -PPPQYFIRLVSDRWLHSETVLPVSF 1106 (1674)
T ss_pred -CCCceEEEEeeccccCCCcccccch
Confidence 4777999999999999999988875
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-103 Score=924.12 Aligned_cols=791 Identities=31% Similarity=0.499 Sum_probs=675.3
Q ss_pred ccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC
Q 043190 653 ALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ 732 (1492)
Q Consensus 653 ~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~ 732 (1492)
..|...+.+ ...-..+.++.|+......+|+|++||.+|+.+|+.+++++.|+|||||||||||.+|+++|++.+.++
T Consensus 77 ~~P~s~~~~--~~~~k~~~isdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~ 154 (1230)
T KOG0952|consen 77 KIPASVPMP--MDGEKLLSISDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH 154 (1230)
T ss_pred ecCccCCCc--cccccceeEEecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh
Confidence 345444433 222334455556544335888999999999999999999999999999999999999999999998852
Q ss_pred --------CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccC-c
Q 043190 733 --------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHS-R 803 (1492)
Q Consensus 733 --------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~-~ 803 (1492)
++.|+|||+|++|||.++++.|.++|..+ |++|..+|||+.....+...++|+|+|||+||.+.|++.. .
T Consensus 155 ~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~ 233 (1230)
T KOG0952|consen 155 EEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDS 233 (1230)
T ss_pred ccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccch
Confidence 36799999999999999999999999888 9999999999998877788999999999999999999875 4
Q ss_pred cccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCC-cceeEecCCCcccc
Q 043190 804 NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVG-EIGLFNFKPSVRPV 882 (1492)
Q Consensus 804 ~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~-~~~~~~~~~~~r~~ 882 (1492)
.+++.+++|||||+|++.++||+++|.+++|+.+.....+..+|+||+|||+||.+|++.||+++ ..+++.|+..+||+
T Consensus 234 ~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 234 ALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred hhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccccc
Confidence 56789999999999999999999999999999888878889999999999999999999999997 56899999999999
Q ss_pred CcEEEEeccCCccccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHH
Q 043190 883 PLEVHIQGYPGKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961 (1492)
Q Consensus 883 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1492)
|+...+.+.+.+........+...++..+.+ ...+.+++|||++|+.+..+|+.|++.....+....|...+
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~------- 386 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP------- 386 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh-------
Confidence 9999999887763333333444445555443 46789999999999999999999999887766655555433
Q ss_pred HhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 962 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
.++.+.++...|+++||+||..+||..+++.|+.|.++||+||++++||||+|+..|||.||+.||.+.+.+.|+.
T Consensus 387 ----~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlg 462 (1230)
T KOG0952|consen 387 ----RNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLG 462 (1230)
T ss_pred ----hhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeeh
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchh
Q 043190 1042 ITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYL 1121 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~ 1121 (1492)
+.+.+|+.||||||+||..|.++++++.+..+.|..++.+..|+||+|...|.|++||||+.|++.++++|++||++||+
T Consensus 463 ilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTyl 542 (1230)
T KOG0952|consen 463 ILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYL 542 (1230)
T ss_pred HHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCccccCCCCC---CcccHHHHHHHHHHHHHHHhHHCCCceecCCc--cccccchhhhhhccccHHHHHHHHhcc
Q 043190 1122 FRRLAINPAYYGLEDT---EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNI 1196 (1492)
Q Consensus 1122 ~~rl~~np~~y~~~~~---~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~--~~~T~lG~~~s~~~i~~~T~~~f~~~l 1196 (1492)
|.||.+||.+||+... ..+.+.+.+.+++..++.+|....+|..|..+ +.+|++||+||+|||+++|++.|++..
T Consensus 543 YVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~ 622 (1230)
T KOG0952|consen 543 YVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLP 622 (1230)
T ss_pred EEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcc
Confidence 9999999999999865 45678889999999999999999999998877 999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhccc--ceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHH
Q 043190 1197 GPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLK 1274 (1492)
Q Consensus 1197 ~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~--~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~ 1274 (1492)
++..+..++|.++|.|.||+.+.+|++|.+.+++|+... .++.. ..+-|+++|+|+|++|-.+...+|..|..
T Consensus 623 k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~-----~~~gk~nil~q~~Is~~~~~~f~L~sD~~ 697 (1230)
T KOG0952|consen 623 KSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFG-----GEKGKVNILLQAYISRTEVKDFSLMSDSL 697 (1230)
T ss_pred cccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccccccccc-----ccchhHHHHHHhhhhccceeeeeeccCcc
Confidence 989999999999999999999999999999999998542 22321 12679999999999999988899999999
Q ss_pred HHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHH
Q 043190 1275 SVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKEN 1354 (1492)
Q Consensus 1275 ~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~ 1354 (1492)
++.+++.||.+|+.+++...+|...+.+++.|++||..++|.. ..++.|++..-. ++.. ++. .+..+...+
T Consensus 698 yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~-~~~l~qf~~~~~---~~~~-~~~----~l~~L~~~~ 768 (1230)
T KOG0952|consen 698 YVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDF-FIPLKQFTLLLN---RKER-KKL----TLLLLRKDE 768 (1230)
T ss_pred cccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh-hhhhhcCCcccc---hhhh-hcc----hHHhhhhhh
Confidence 9999999999999999999999988888999999999999998 899999987765 2322 221 455555566
Q ss_pred HhhhhCCchHHHHHHHhcCCCceEEEEEEEeccCCCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCC
Q 043190 1355 LQTVIGNFPVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNT 1434 (1492)
Q Consensus 1355 ~~~~l~~~~~~~i~~~~~~~P~i~i~~~~~~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~ 1434 (1492)
+..++...... .+++..+|.++++..+.+. ..+...+.+.+... +.|.-..+..-... +++.|.+.
T Consensus 769 ~g~~w~~~~~~--~k~l~~ip~v~v~a~~~p~---t~~vlri~~~~~~~-------f~w~~~~hg~~g~~--i~~ed~~~ 834 (1230)
T KOG0952|consen 769 LGELWHNVPYG--LKQLSGIPLVNVEALIQPI---TRNVLRIEVAITPD-------FEWNDGIHGKAGQP--IFKEDSSL 834 (1230)
T ss_pred hccccccCchh--hhhhccCCceehhhhhccc---hhhhheeeeccCCc-------eEEecccccccCce--eEeecCCC
Confidence 66666554433 8889999999998877662 23444444444433 23333222222222 88999998
Q ss_pred CeEEEEEEeecCCcc-----eEEEEecCCCCCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1435 SELYALKRISFSDRL-----NTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1435 ~~l~~~~r~~~~~~~-----~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
+.++.++..-++... ...|.+|...|-...+..++.||.|+|++..+.+.+
T Consensus 835 ~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~ 890 (1230)
T KOG0952|consen 835 LPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSF 890 (1230)
T ss_pred CcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceeccccc
Confidence 899988777553332 256678887777788999999999999999887764
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-86 Score=848.72 Aligned_cols=652 Identities=26% Similarity=0.386 Sum_probs=549.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||.+|+|+|.+|++..+.+++|++++||||||||++|++|+++.+.. +++++|++|+++||.|++++|++ +... |.
T Consensus 20 g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--~~kal~i~P~raLa~q~~~~~~~-~~~~-g~ 95 (737)
T PRK02362 20 GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--GGKALYIVPLRALASEKFEEFER-FEEL-GV 95 (737)
T ss_pred CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHHHH-hhcC-CC
Confidence 89999999999999866689999999999999999999999998863 78999999999999999999985 6554 89
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++..++|+...+......++|+|+|||+++.++++. ..++++++++|+||+|++++ .||+.++.++++++...
T Consensus 96 ~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---- 169 (737)
T PRK02362 96 RVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---- 169 (737)
T ss_pred EEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC----
Confidence 999999998776666677899999999999999863 34688999999999999975 79999999999998653
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccC----hhHHHHHh-hcCCCC
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMN----KPAYAAIC-THSPTK 918 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~-~~~~~~ 918 (1492)
...|+|++|||++|++++++|++... +.+.+||+++...+.......+......+. ...+..+. ....++
T Consensus 170 ~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (737)
T PRK02362 170 PDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGG 244 (737)
T ss_pred CCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCC
Confidence 46899999999999999999998754 467788988876554222111111111111 12222222 234678
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhc-------CcHHHHHHhccceEeecCCCCHHHHH
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQV-------TDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
++||||+|++.|+.+|..|....... ........+....+.+ .+..|..++..||++|||||++.+|.
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 99999999999999999997764321 0011112222222222 45678899999999999999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.+++.|++|.++|||||+++++|||+|++++||+++++||+.. ++.++|..+|.||+|||||+|+|..|.|++++.+.+
T Consensus 320 ~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred HHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999999999999999999999999999876 457899999999999999999999999999998753
Q ss_pred --HHHHHHhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHH
Q 043190 1072 --KSFYKKFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYL 1146 (1492)
Q Consensus 1072 --~~~~~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l 1146 (1492)
.+.|++++ .++.|++|.+.. .|.++++++|+.|.+.+.+|+.+|+++||+|++. ..+.++
T Consensus 399 ~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~---------------~~~~~l 463 (737)
T PRK02362 399 ELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT---------------DDTGRL 463 (737)
T ss_pred hHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc---------------cchHHH
Confidence 45678888 588999999954 6999999999999999999999999999998742 124688
Q ss_pred HHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCC--CHHHHHHHHhCCCCCCCCcCCCCh
Q 043190 1147 SRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT--SLEVFLHILSGASEYDELPVRHNE 1224 (1492)
Q Consensus 1147 ~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~--~~~~ll~ils~a~Ef~~i~~R~~e 1224 (1492)
+++++++++.|.+.|||+.+++.+.+|++|+++|+||++|.|+..|.++++... +..++|+++|.++||..+++|++|
T Consensus 464 ~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e 543 (737)
T PRK02362 464 ERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGD 543 (737)
T ss_pred HHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhH
Confidence 999999999999999999887779999999999999999999999998887654 778999999999999999999999
Q ss_pred hHHHHHhh--------cccceeecCCCCCC--hhHHHHHHHHHHhcCCCCCC--cch---HhhHHHHHHhHHHHHHHHHH
Q 043190 1225 DNHNEALS--------QRVRFAVDNNRLDD--PHVKANLLFQAHFSRLDLPI--SDY---VTDLKSVLDQSIRIIQAMID 1289 (1492)
Q Consensus 1225 ~~~l~~l~--------~~~~~~~~~~~~~~--~~~K~~lLlqa~l~r~~l~~--~~l---~~D~~~il~~~~rl~~a~~~ 1289 (1492)
...+.++. .++|++.+...+.. ++.|+++|||+||+|.+++. ..| .+|++.+++++.||++|+++
T Consensus 544 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~ 623 (737)
T PRK02362 544 YEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAER 623 (737)
T ss_pred HHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 98888764 44555443333333 78999999999999999762 223 78999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHH
Q 043190 1290 ICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQ 1369 (1492)
Q Consensus 1290 i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~ 1369 (1492)
+|... |+..+..+++|+|||.||+|++ ..||+||||+|+.++++|+++||+|+.||++++++++..+++++..++|.+
T Consensus 624 i~~~~-~~~~~~~~~~l~~~l~~gv~~~-~~~L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g~~~~~~i~~ 701 (737)
T PRK02362 624 LASEL-DLDLARAARELEKRVEYGVREE-LLDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAILGEKIAENILE 701 (737)
T ss_pred HHHHh-CccHHHHHHHHHHHHHhCCCHH-HHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHCHHHHHHHHH
Confidence 98765 4566889999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q 043190 1370 DLQRF 1374 (1492)
Q Consensus 1370 ~~~~~ 1374 (1492)
.++..
T Consensus 702 ~~~~~ 706 (737)
T PRK02362 702 QAGRR 706 (737)
T ss_pred HhCcc
Confidence 98844
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-82 Score=809.43 Aligned_cols=643 Identities=26% Similarity=0.400 Sum_probs=526.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+.+|+|+|.++++..+.+++|++++||||||||++|++|+++.+.. +++++||++|+++|+.|++++|.. +... |.
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~-~~~~-g~ 96 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKD-WEKL-GL 96 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHH-Hhhc-CC
Confidence 99999999999999855589999999999999999999999998764 368999999999999999999986 5544 89
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++..++|+...+.....+++|+|+|||+|+.++++ ...++++++++|+||+|++++ .+|+.++.+++++.
T Consensus 97 ~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------- 167 (720)
T PRK00254 97 RVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------- 167 (720)
T ss_pred EEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC-------
Confidence 99999999876666667889999999999999886 335688999999999999975 69999999988753
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEe--ccCCcccccc---ccccChhHHHHHhhcCCCC
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQ--GYPGKFYCPR---MNSMNKPAYAAICTHSPTK 918 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~--~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 918 (1492)
...|+|++|||++|++++++|++... +.+..||+++...+. ++........ ...+...++..+ ..++
T Consensus 168 ~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~ 239 (720)
T PRK00254 168 GRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV---KKGK 239 (720)
T ss_pred cCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH---HhCC
Confidence 46899999999999999999998754 456778888754322 1110000000 011112222323 2468
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC-hHHHHHHHhh----cCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP-EEDLQMVLSQ----VTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
++||||+|++.|+.+|..|...+.. ++... ..++...... ..+..|.+++..||++|||+|++++|..+
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~v 313 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLI 313 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHH
Confidence 9999999999999999988765431 11111 1222333222 34677888999999999999999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc-H
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK-K 1072 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~-~ 1072 (1492)
++.|++|.++|||||+++++|||+|++++||.++++|+. .++.++|..+|.||+|||||+|+|..|.+++++...+ .
T Consensus 314 e~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~ 391 (720)
T PRK00254 314 EDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS 391 (720)
T ss_pred HHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchH
Confidence 999999999999999999999999999999999999963 3456789999999999999999999999999998755 4
Q ss_pred HHHHHhh-cCCCceeeccc--ccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHH
Q 043190 1073 SFYKKFL-YEPFPVESSLR--DQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRL 1149 (1492)
Q Consensus 1073 ~~~~~~l-~~~~pies~l~--~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~ 1149 (1492)
+.+++++ .++.++.+.+. +.|.++++++|+.+.+.+.+|+++|+++||+|. +||++|+ +.+.
T Consensus 392 ~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~------------~~~~ 456 (720)
T PRK00254 392 KLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYS------------LEEK 456 (720)
T ss_pred HHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHh------------HHHH
Confidence 5677775 33444555543 247889999999999999999999999999995 5777765 3356
Q ss_pred HHHHHHHhHHCCCceecCC-ccccccchhhhhhccccHHHHHHHHhccCC---CCCHHHHHHHHhCCCCCCCCcCCCChh
Q 043190 1150 VQNTFEDLEDSGCVKMTED-TVEPTMLGTIASQYYLSYVTVSMFGSNIGP---DTSLEVFLHILSGASEYDELPVRHNED 1225 (1492)
Q Consensus 1150 i~~~l~~L~~~~~i~~~~~-~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~---~~~~~~ll~ils~a~Ef~~i~~R~~e~ 1225 (1492)
+++++..|.++|||+.+++ .+.+|++|+++|+|||+|.|+..|.+.++. ..+..++|+++|.++||..+++|++|.
T Consensus 457 v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~ 536 (720)
T PRK00254 457 AKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEM 536 (720)
T ss_pred HHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhH
Confidence 8889999999999998764 499999999999999999999999888765 678899999999999999999999999
Q ss_pred HHHHHh--------hcccceeecCCCCCC--hhHHHHHHHHHHhcCCCCCCcch------HhhHHHHHHhHHHHHHHHHH
Q 043190 1226 NHNEAL--------SQRVRFAVDNNRLDD--PHVKANLLFQAHFSRLDLPISDY------VTDLKSVLDQSIRIIQAMID 1289 (1492)
Q Consensus 1226 ~~l~~l--------~~~~~~~~~~~~~~~--~~~K~~lLlqa~l~r~~l~~~~l------~~D~~~il~~~~rl~~a~~~ 1289 (1492)
..+.++ ...+|++.+. .+.. ++.|+++|||+|++|++++ ..+ .+|++.+++++.||++|+++
T Consensus 537 ~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~-~~~~~~~~~~gd~~~~~~~~~~l~~a~~~ 614 (720)
T PRK00254 537 EDLLDEAYEMEDRLYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEG-EIVETYNIDPGDLYRILELADWLMYSLIE 614 (720)
T ss_pred HHHHHHHHhhcccccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 888743 3334443221 2223 7899999999999999987 333 89999999999999999999
Q ss_pred HHHhcCCHHHHHHHH-HHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHH
Q 043190 1290 ICANSGWLSSSITCM-HLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSR 1366 (1492)
Q Consensus 1290 i~~~~~~~~~~~~~l-~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~ 1366 (1492)
+++..|+....++++ +|+|||+||+|++ .++|.|+||+|+.++++|.++|+.|+.++.+++.+++.++ ++++.++.
T Consensus 615 i~~~~~~~~~~~~~l~~l~~rl~~g~~~~-~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~a~~ 693 (720)
T PRK00254 615 LYKLFEPKQEVLDYLETLHLRVKHGVREE-LLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKIVEG 693 (720)
T ss_pred HHHHhCcchhHHHHHHHHHHHHHcCCCHH-HhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHHHHH
Confidence 999766544444444 5999999999998 9999999999999999999999999999999999999998 77888899
Q ss_pred HHHHhcC
Q 043190 1367 LHQDLQR 1373 (1492)
Q Consensus 1367 i~~~~~~ 1373 (1492)
|.++++.
T Consensus 694 i~~~~~~ 700 (720)
T PRK00254 694 IFKHLGV 700 (720)
T ss_pred HHHHhcc
Confidence 9999873
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-78 Score=770.29 Aligned_cols=635 Identities=27% Similarity=0.371 Sum_probs=519.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+|+ |+|+|.++++.+. +++|++++||||||||+++++++++.+.. +++++|++|+++||.|++++|.+ +... |.
T Consensus 20 ~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~-l~~~-g~ 93 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSR-LRSL-GM 93 (674)
T ss_pred CCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHH-Hhhc-CC
Confidence 666 9999999999986 88999999999999999999999998765 67999999999999999999986 5443 88
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++...+|+..........++|+|+|||+++.+++++. ..+++++++|+||+|++++ .+|+.++.++++++.. .
T Consensus 94 ~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~----~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV----N 167 (674)
T ss_pred eEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc----C
Confidence 9999999887665555678999999999999998743 4588999999999999875 7999999999988754 3
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh-cCCCCCeeE
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT-HSPTKPVLI 922 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LI 922 (1492)
.+.|+|++|||++|.+++++|++... +....||+++...+........... ..........+.. ...++++||
T Consensus 168 ~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~vLV 241 (674)
T PRK01172 168 PDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDINSLIKETVNDGGQVLV 241 (674)
T ss_pred cCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHHHHHHHHHhCCCcEEE
Confidence 47899999999999999999998764 4667888888765543221111000 0001112222222 346789999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc
Q 043190 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKI 1002 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 1002 (1492)
||++++.|+.++..|.+....... + ....+ .....+..+.+++..||++|||+|++++|..+++.|++|.+
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~---~-~~~~~-----~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFND---F-KVSSE-----NNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhccc---c-ccccc-----ccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999876543211 0 00000 02234567888889999999999999999999999999999
Q ss_pred eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc-HHHHHHhh-c
Q 043190 1003 QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK-KSFYKKFL-Y 1080 (1492)
Q Consensus 1003 ~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~-~~~~~~~l-~ 1080 (1492)
+|||||+++++|+|+|+..|||.+++.|++... .++|..+|.||+|||||+|+|..|.+++++...+ .+.+++++ .
T Consensus 313 ~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~--~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~ 390 (674)
T PRK01172 313 KVIVATPTLAAGVNLPARLVIVRDITRYGNGGI--RYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSG 390 (674)
T ss_pred eEEEecchhhccCCCcceEEEEcCceEeCCCCc--eeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcC
Confidence 999999999999999999999999998886543 4579999999999999999999999999987655 57788888 7
Q ss_pred CCCceeecccccchhh--hHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhH
Q 043190 1081 EPFPVESSLRDQLHDH--FNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLE 1158 (1492)
Q Consensus 1081 ~~~pies~l~~~l~~~--l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~ 1158 (1492)
++.|++|.+......+ ++++|+.|.+.+.+|+.+|+++||+|++ |+ .+++++.|+++++.|.
T Consensus 391 ~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~-------------~~~l~~~v~~~l~~L~ 454 (674)
T PRK01172 391 EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG-------------VDEIDYYIESSLKFLK 454 (674)
T ss_pred CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc-------------hHHHHHHHHHHHHHHH
Confidence 8999999998764444 5599999999999999999999999973 21 2467899999999999
Q ss_pred HCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhccccee
Q 043190 1159 DSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFA 1238 (1492)
Q Consensus 1159 ~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~ 1238 (1492)
++|||+.+ +.+.+|++|+++|+||++|.|+..|.++++...+...+|+++|.|+|| +|+|++|+..+.++...++.
T Consensus 455 ~~~~i~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~- 530 (674)
T PRK01172 455 ENGFIKGD-VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYAMEFLEDIGV- 530 (674)
T ss_pred HCCCcccC-CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHHHHHHHHhcc-
Confidence 99999743 458999999999999999999999999999988999999999999999 89999999888888776653
Q ss_pred ecCCCCCChhHHHHHHHHHHhcCCCCCC--cc---hHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 043190 1239 VDNNRLDDPHVKANLLFQAHFSRLDLPI--SD---YVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313 (1492)
Q Consensus 1239 ~~~~~~~~~~~K~~lLlqa~l~r~~l~~--~~---l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~ 1313 (1492)
.....++.|+++|||+|++|++++. .. ..+|+..+++.+.|+..|+..++... +......+-.|.++|+||
T Consensus 531 ---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~l~~~~~rl~~g 606 (674)
T PRK01172 531 ---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY-KPEMRRKLEILNIRIKEG 606 (674)
T ss_pred ---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcC
Confidence 1234688999999999999999872 12 26788888888888888888887653 222222222366669999
Q ss_pred cccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1314 LWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1314 ~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
+|++ .+||+|||||++.++++|+++|++|+.||++++++++..+ +++.+.++|.+.+++
T Consensus 607 v~~~-~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 607 IRED-LIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMK 667 (674)
T ss_pred CCHH-HHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999999888 567777888776654
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-69 Score=667.20 Aligned_cols=642 Identities=30% Similarity=0.419 Sum_probs=501.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
++.+++|.|+.++...+.+++|+|||+|||||||++++++|++.+.++ +.+++||||+|+||.|++++|+ .+... |+
T Consensus 28 ~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~-~~~~~-Gi 104 (766)
T COG1204 28 GIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFS-RLEEL-GI 104 (766)
T ss_pred ChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhh-hHHhc-CC
Confidence 665677777777766554689999999999999999999999998864 6899999999999999999998 56666 99
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-CccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~~~~~i~~~l~~~~~~~~ 843 (1492)
+|...|||++.....+.+++|+|+|||+|+.++|+... ++..+++|||||+|++++. ||+.+|.++++++...
T Consensus 105 rV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---- 178 (766)
T COG1204 105 RVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---- 178 (766)
T ss_pred EEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC----
Confidence 99999999998888889999999999999999998554 7899999999999999986 9999999999998654
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCccccccccccChhHHH-HHhhcCCCCCee
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYA-AICTHSPTKPVL 921 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~L 921 (1492)
...|++++|||+||++++++|++++.. ..+.+.+..++++....+.+...... .........++. .+.....++++|
T Consensus 179 ~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvL 257 (766)
T COG1204 179 ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVL 257 (766)
T ss_pred cceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEE
Confidence 358999999999999999999999865 45566667777777766665543332 111111122222 334457789999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCC--CChHHHH-HHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLG--MPEEDLQ-MVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA 998 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 998 (1492)
|||+||+.+..+|..+............... ....... .......+..|.+++..|+++||+||+.++|..+++.|+
T Consensus 258 vFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr 337 (766)
T COG1204 258 VFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR 337 (766)
T ss_pred EEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh
Confidence 9999999999999999865433221111111 0011111 111122347889999999999999999999999999999
Q ss_pred cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH-HHHHH
Q 043190 999 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK-SFYKK 1077 (1492)
Q Consensus 999 ~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~-~~~~~ 1077 (1492)
.|.++|||||+++++|||+|+.+|||.+++.|++. +++.++|+.+++||.|||||+|+|..|.++++++..+. ..+..
T Consensus 338 ~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~ 416 (766)
T COG1204 338 KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAE 416 (766)
T ss_pred cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHH
Confidence 99999999999999999999999999999999984 44899999999999999999999999999999955443 44333
Q ss_pred hhcC--CCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHH
Q 043190 1078 FLYE--PFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFE 1155 (1492)
Q Consensus 1078 ~l~~--~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~ 1155 (1492)
.... +.|++|.+. +..+.+...+.+.+..++.+|+..++||.|+..||.+|+.. .....+..++.
T Consensus 417 ~~~~~~~e~~~s~l~----~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~---------~~~~~i~~~~~ 483 (766)
T COG1204 417 LYIQSEPEPIESKLG----DELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEG---------MLREEILASLR 483 (766)
T ss_pred HhhccCcchHHHhhc----ccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhcccc---------chHHHHHHHHH
Confidence 3333 344444433 33367778888899999999999999999999999998762 23466788999
Q ss_pred HhHHCC-CceecCCccccccchhhhhhccccHHHHHHHHhccCCCC---CHHHHHHHHhCCCCCCCCcCCCChhHHH--H
Q 043190 1156 DLEDSG-CVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT---SLEVFLHILSGASEYDELPVRHNEDNHN--E 1229 (1492)
Q Consensus 1156 ~L~~~~-~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~---~~~~ll~ils~a~Ef~~i~~R~~e~~~l--~ 1229 (1492)
.|.+.+ .+......+.+|++|+.+|++||++.|++.|...+.... +..++++.++.++||..+++|.++...+ .
T Consensus 484 ~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~ 563 (766)
T COG1204 484 YLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLD 563 (766)
T ss_pred HHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHH
Confidence 999997 666666669999999999999999999999987765544 7889999999999999999999887664 3
Q ss_pred Hhhcccceeec----CCCCC----ChhHHHHHHHHHHhcCCCCC-C-cc---hHhhHHHHHHhHHHH-------HHHHHH
Q 043190 1230 ALSQRVRFAVD----NNRLD----DPHVKANLLFQAHFSRLDLP-I-SD---YVTDLKSVLDQSIRI-------IQAMID 1289 (1492)
Q Consensus 1230 ~l~~~~~~~~~----~~~~~----~~~~K~~lLlqa~l~r~~l~-~-~~---l~~D~~~il~~~~rl-------~~a~~~ 1289 (1492)
.+....++... ..... ....|....+.+|+.+.+.. + .. ...|+..+...+.|+ ..++-.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~~r 643 (766)
T COG1204 564 ELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAER 643 (766)
T ss_pred HHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhhhh
Confidence 33333322111 10111 22456777788888887654 1 22 368899999999999 777777
Q ss_pred HHHhcCCHHHH-HHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcC
Q 043190 1290 ICANSGWLSSS-ITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDI 1350 (1492)
Q Consensus 1290 i~~~~~~~~~~-~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~ 1350 (1492)
.+...+...-. ...=.+...+..|+-++...+|..+++++..+++++.++|..+++++...
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g~~~~~~~~~~ 705 (766)
T COG1204 644 LAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLI 705 (766)
T ss_pred hHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhhhccHHHHHhh
Confidence 77766544322 22333778888898844378899999999999999999999999999843
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-65 Score=654.13 Aligned_cols=505 Identities=22% Similarity=0.310 Sum_probs=414.8
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHh----hHHHHHHHHHHHhc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELL----SEICYKKVVDSLRQ 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 80 (1492)
.+++|+|+||||+||++++++|+++. .|.+++||+|+...+..............+ ....+..+.+.+..
T Consensus 169 ~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
T PRK02362 169 NPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEE 242 (737)
T ss_pred CCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHc
Confidence 45789999999999999999999876 478899999998755422111000000001 12234455556678
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhh----cCchHHHHHhcccEEEEcCCCChhh
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMK----SRNKDLIELFGLAVGVHHAGMLRSD 156 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~gv~~hhagl~~~~ 156 (1492)
++|+||||+||++|+.+|+.|.+..... +...+......+.+.+.. ..+..|.+++.+|||+|||||++++
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~e 317 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREH 317 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHH
Confidence 8999999999999999999998764321 111111222222233321 2357899999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 157 RGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 157 R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|..||++|++|.++|||||+|||||||+|+++|||+++++||+..+ +++..+|+||+|||||+|+|..|.||+++...
T Consensus 318 R~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 318 RELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999999999997642 35667799999999999999999999999775
Q ss_pred c-H-HHHHHHh-cCCCccccchh--HhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchH
Q 043190 235 K-L-AYYLRLL-TSQLPIESQFI--SSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSL 309 (1492)
Q Consensus 235 ~-~-~~~~~~~-~~~~~ies~l~--~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~ 309 (1492)
+ . +.|.+++ ..+.|++|++. ..+.+|+|++|+.|++.+.+|+.+|+++||+|++.. .
T Consensus 398 ~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~------------------~ 459 (737)
T PRK02362 398 DELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTD------------------D 459 (737)
T ss_pred hhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhcc------------------c
Confidence 3 3 3456666 57889999995 489999999999999999999999999999998631 1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCC--CHHHHHHHhcCCccCCCC
Q 043190 310 SLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHM--NDSEVIEMVSHSSEFENI 387 (1492)
Q Consensus 310 ~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~--~~~~ll~ils~s~Ef~~i 387 (1492)
..++.+++++++++|.+.|||+.+ ++.+.||++|+++|+||++|.|+..|.+.++... +..++|+++|.++||..+
T Consensus 460 ~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~ 537 (737)
T PRK02362 460 TGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYEL 537 (737)
T ss_pred hHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCcccccc
Confidence 235678999999999999999965 4679999999999999999999999999998764 788999999999999999
Q ss_pred ccchhHHHHHHHHHhc-------CCcccccCCC---CChhHHHHHHHHHHHcCCCCC----Cchh-HhhHHHHHHhHHHH
Q 043190 388 VVRDEEQNELETLVQT-------LCPVEVKGGP---SNKHGKISILIQLYISRGWID----TFSL-VSDAAYISASLARI 452 (1492)
Q Consensus 388 ~~R~~e~~~l~~l~~~-------~~~~~~~~~~---~~~~~K~~~Llqa~i~~~~~~----~~~l-~~d~~~i~~~~~rl 452 (1492)
++|.+|.+.++.+... .+|++..... ..++.|+++|||+|++|.+++ .|++ .+|++.+++++.||
T Consensus 538 ~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l 617 (737)
T PRK02362 538 YLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWL 617 (737)
T ss_pred ccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999887522 1343332211 126789999999999999865 4667 59999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCc
Q 043190 453 MRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTP 531 (1492)
Q Consensus 453 ~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~ 531 (1492)
++|+.++|...+ ...+..+++|++|+.||+|++..||.|+| ++|+..+++|++.|+ |+.+|..++++++..++| ++
T Consensus 618 ~~a~~~i~~~~~-~~~~~~~~~l~~~l~~gv~~~~~~L~~ip-~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g-~~ 694 (737)
T PRK02362 618 LHAAERLASELD-LDLARAARELEKRVEYGVREELLDLVGLR-GVGRVRARRLYNAGIESRADLRAADKSVVLAILG-EK 694 (737)
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHhCCCHHHHHHhCCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHC-HH
Confidence 999999987754 56789999999999999999999999999 999999999999999 999999999999999998 78
Q ss_pred hHHHHHHHhccC
Q 043190 532 GGRLVKQYLGYF 543 (1492)
Q Consensus 532 ~~~~i~~~~~~~ 543 (1492)
.+++|++.+...
T Consensus 695 ~~~~i~~~~~~~ 706 (737)
T PRK02362 695 IAENILEQAGRR 706 (737)
T ss_pred HHHHHHHHhCcc
Confidence 899999998743
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=619.92 Aligned_cols=503 Identities=21% Similarity=0.274 Sum_probs=397.1
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEE--ee--CCchhHH-HHHhhHHHHHHHHHHH
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIG--IS--EPNFAAR-NELLSEICYKKVVDSL 78 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~ 78 (1492)
..+++|+|+||||++|++++++|+++. .+..++||+|+...+.. .. ......+ ...+ ...+.+.+
T Consensus 166 l~~~~qiI~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 235 (720)
T PRK00254 166 MLGRAQILGLSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW----ESLVYDAV 235 (720)
T ss_pred cCcCCcEEEEEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCCeeeccCcchhcchHHH----HHHHHHHH
Confidence 346789999999999999999999876 36788999999653321 11 1111000 1112 22344455
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHh-hcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVM-KSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+.++|+||||+||+.|+.+|..+.+..... +..........+.+... ...+..|++++.+||++|||||++++|
T Consensus 236 ~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 236 KKGKGALVFVNTRRSAEKEALELAKKIKRF-----LTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HhCCCEEEEEcChHHHHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 678999999999999999999997654321 11111111222222222 234678999999999999999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
..||++|++|.++|||||+||+||||+|+++|||.+++.|+.... .+...+|+||+|||||+|+|..|.+++++..++.
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~ 390 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEP 390 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcch
Confidence 999999999999999999999999999999999999999863211 1233468999999999999999999999987653
Q ss_pred -HHHHHHh-cCCCccccchh--HhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHH
Q 043190 237 -AYYLRLL-TSQLPIESQFI--SSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLK 312 (1492)
Q Consensus 237 -~~~~~~~-~~~~~ies~l~--~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~ 312 (1492)
+.|.+++ +.++++.|.+. +.|.+|++++|+.|++.+.+|+++|+++||+|.+ ||.+|+
T Consensus 391 ~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~---~~~~~~--------------- 452 (720)
T PRK00254 391 SKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQ---RKDLYS--------------- 452 (720)
T ss_pred HHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHh---hcChHh---------------
Confidence 3344443 33445556553 3678999999999999999999999999999964 565452
Q ss_pred HHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhc---CCCHHHHHHHhcCCccCCCCcc
Q 043190 313 QRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRR---HMNDSEVIEMVSHSSEFENIVV 389 (1492)
Q Consensus 313 ~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~---~~~~~~ll~ils~s~Ef~~i~~ 389 (1492)
+.+.+++++++|.++|||+.+. ++.+.+|++|+++|+|||+|+|+..|.+.++. ..+...+|+++|.++||..+++
T Consensus 453 ~~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~ 531 (720)
T PRK00254 453 LEEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNY 531 (720)
T ss_pred HHHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCc
Confidence 2467889999999999999864 36799999999999999999999999999876 6688999999999999999999
Q ss_pred chhHHHHHHHHHhc-----CCcccccCC--C--CChhHHHHHHHHHHHcCCCCCC----chh-HhhHHHHHHhHHHHHHH
Q 043190 390 RDEEQNELETLVQT-----LCPVEVKGG--P--SNKHGKISILIQLYISRGWIDT----FSL-VSDAAYISASLARIMRA 455 (1492)
Q Consensus 390 R~~e~~~l~~l~~~-----~~~~~~~~~--~--~~~~~K~~~Llqa~i~~~~~~~----~~l-~~d~~~i~~~~~rl~~a 455 (1492)
|++|...+..+... ..+.|.+.. . ..++.|+++|||+|++|.+++. |+. .+|++.+++++.||++|
T Consensus 532 r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a 611 (720)
T PRK00254 532 SRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYS 611 (720)
T ss_pred chhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99998888754433 011222211 1 1367999999999999998763 333 49999999999999999
Q ss_pred HHHHHHhcCcH-HHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCch
Q 043190 456 LFETCLRRGWC-EMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPG 532 (1492)
Q Consensus 456 l~ei~~~~~~~-~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~ 532 (1492)
+++++...||. .....+.+|++||.||+|++.+||.|+| ++|+..+++|.++|+ |+.++.++++++|..+.| +++.
T Consensus 612 ~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ip-gig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~ 690 (720)
T PRK00254 612 LIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLP-MIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKI 690 (720)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCC-CCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHH
Confidence 99999977763 2233455899999999999999999999 999999999999999 999999999999999966 5889
Q ss_pred HHHHHHHhc
Q 043190 533 GRLVKQYLG 541 (1492)
Q Consensus 533 ~~~i~~~~~ 541 (1492)
++.|+++++
T Consensus 691 a~~i~~~~~ 699 (720)
T PRK00254 691 VEGIFKHLG 699 (720)
T ss_pred HHHHHHHhc
Confidence 999999987
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=600.69 Aligned_cols=488 Identities=21% Similarity=0.273 Sum_probs=401.0
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc--hhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN--FAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++|+|+||||++|++++++|+++. .+...+||+|+...+....... ...+. .......+.+...+++
T Consensus 167 ~~~~riI~lSATl~n~~~la~wl~~~------~~~~~~r~vpl~~~i~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 237 (674)
T PRK01172 167 NPDARILALSATVSNANELAQWLNAS------LIKSNFRPVPLKLGILYRKRLILDGYERS---QVDINSLIKETVNDGG 237 (674)
T ss_pred CcCCcEEEEeCccCCHHHHHHHhCCC------ccCCCCCCCCeEEEEEecCeeeecccccc---cccHHHHHHHHHhCCC
Confidence 45799999999999999999999876 3778899999986543221100 00000 0012233444456789
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+||++|+.+|+.|.+........... .......++.|++++.+||++|||||++++|..+|+
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~------------~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVS------------SENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhccccccc------------ccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 99999999999999999998765432211100 001123356789999999999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCcc-HHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-LAYYL 240 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~~~~~ 240 (1492)
.|++|.++|||||+|++||||+|+++|||.++..|+.... .++..++.||+|||||+|+|..|.+++++...+ .+.+.
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~ 385 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAK 385 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHH
Confidence 9999999999999999999999999999999988875432 356667999999999999999999999987654 56777
Q ss_pred HHh-cCCCccccchhHh--HHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 241 RLL-TSQLPIESQFISS--LKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 241 ~~~-~~~~~ies~l~~~--l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
+++ +.+.|++|++... +..+++++|+.|.+.+.+|+.+|+++||+|++. + .+++.+.+
T Consensus 386 ~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~---~----------------~~~l~~~v 446 (674)
T PRK01172 386 KYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQN---G----------------VDEIDYYI 446 (674)
T ss_pred HHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcC---c----------------hHHHHHHH
Confidence 777 7889999999864 455566999999999999999999999999842 1 12457899
Q ss_pred HHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHH
Q 043190 318 TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNEL 397 (1492)
Q Consensus 318 ~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l 397 (1492)
+++++.|.++|+|+.+ +.+.+|++|+++|+||++|+|+..|.+.++...+...+|+++|.++|| +++|..|...+
T Consensus 447 ~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~ 521 (674)
T PRK01172 447 ESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYA 521 (674)
T ss_pred HHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHH
Confidence 9999999999999743 568999999999999999999999999999988999999999999999 77777777777
Q ss_pred HHHHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCC----CchhH-hhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHH
Q 043190 398 ETLVQTLCPVEVKGGPSNKHGKISILIQLYISRGWID----TFSLV-SDAAYISASLARIMRALFETCLRRGWCEMSLFM 472 (1492)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~----~~~l~-~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~ 472 (1492)
..+... .+. .....++.|+++|||+|++|.+++ .|... +|.+.+++.+.|+..|+..+|... +...+..+
T Consensus 522 ~~~~~~-~~~---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~l 596 (674)
T PRK01172 522 MEFLED-IGV---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY-KPEMRRKL 596 (674)
T ss_pred HHHHHH-hcc---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 777665 332 123457899999999999999876 34444 999999999999999999999764 46667778
Q ss_pred HHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 473 LEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 473 ~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
-.|.++|.||+|++..||.|+| ++++.++++|.++|+ |+.++.+++++++.++++ ++++++.|.+.++++
T Consensus 597 ~~~~~rl~~gv~~~~~~L~~ip-~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 668 (674)
T PRK01172 597 EILNIRIKEGIREDLIDLVLIP-KVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMKI 668 (674)
T ss_pred HHHHHHHHcCCCHHHHhhcCCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8899999999999999999999 999999999999999 999999999999999988 788899998887654
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=561.37 Aligned_cols=549 Identities=29% Similarity=0.367 Sum_probs=402.6
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMV 86 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 86 (1492)
.+||||||||+||++++|+||++++....+.+.+.+|++|....+.+...... ......+..++.++.+.++.++|+||
T Consensus 180 ~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvLv 258 (766)
T COG1204 180 LIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLV 258 (766)
T ss_pred ceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEEE
Confidence 48999999999999999999999965556666667777777777766653322 22223355677888889999999999
Q ss_pred EEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhC
Q 043190 87 FVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSE 166 (1492)
Q Consensus 87 F~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~ 166 (1492)
|||||+.|+.+|+++++........................+.....++.|.+++..|+|+|||||++++|..+|+.|+.
T Consensus 259 Fv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~ 338 (766)
T COG1204 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK 338 (766)
T ss_pred EEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc
Confidence 99999999999999997554322211111000000000001222334589999999999999999999999999999999
Q ss_pred CCccEEEeccccccccCCCcEEEEEeccceecCCCCCccc---CchhhhhhccCCCCCCccceEEEEe-CCccHHHHHHH
Q 043190 167 GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRD---LGMLDIFGRAGRPQFDRSGEGIIIT-SHDKLAYYLRL 242 (1492)
Q Consensus 167 g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~---~~~~~~~GRAGR~~~d~~G~~i~~~-~~~~~~~~~~~ 242 (1492)
|+++|||||+|||||||+||++|||++++.|++. +++.. ++++||+|||||||+|..|.+++++ +.++.+++...
T Consensus 339 g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~ 417 (766)
T COG1204 339 GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAEL 417 (766)
T ss_pred CCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHH
Confidence 9999999999999999999999999999999984 33544 5688999999999999999999999 45555555555
Q ss_pred hcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHHHHH
Q 043190 243 LTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAAR 322 (1492)
Q Consensus 243 ~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (1492)
...+.|.+ ....|-+..+++..++++.+..++.+|+..||+|.|+..+|..|+... .+..+..+++
T Consensus 418 ~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~------------~~~~i~~~~~ 483 (766)
T COG1204 418 YIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM------------LREEILASLR 483 (766)
T ss_pred hhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc------------hHHHHHHHHH
Confidence 55554433 344445455889999999999999999999999999999999886522 2567889999
Q ss_pred HHHHhc-cccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCC---CHHHHHHHhcCCccCCCCccchhHHHHH-
Q 043190 323 ALDKAK-MMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHM---NDSEVIEMVSHSSEFENIVVRDEEQNEL- 397 (1492)
Q Consensus 323 ~L~~~~-~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~---~~~~ll~ils~s~Ef~~i~~R~~e~~~l- 397 (1492)
.|.+.+ +++ .....+.+|++|+.+|+|||+++|+..|.+.+.... +..++++.++.++||..++.|..+..++
T Consensus 484 ~L~~~~~~~~--~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~ 561 (766)
T COG1204 484 YLEENGLILD--ADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELV 561 (766)
T ss_pred HHHhccceee--ccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhh
Confidence 999997 333 345789999999999999999999999999987755 8899999999999999999998888776
Q ss_pred HHHHhcCCcccccCCCC---------ChhHHHHHHHHHHHcCCCCC----CchhH-hhHHHHHHhHHHH-------HHHH
Q 043190 398 ETLVQTLCPVEVKGGPS---------NKHGKISILIQLYISRGWID----TFSLV-SDAAYISASLARI-------MRAL 456 (1492)
Q Consensus 398 ~~l~~~~~~~~~~~~~~---------~~~~K~~~Llqa~i~~~~~~----~~~l~-~d~~~i~~~~~rl-------~~al 456 (1492)
........++...+... ....|....+-+|+++.+.. .|... +|+..+...+.|+ ..++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~ 641 (766)
T COG1204 562 LDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAA 641 (766)
T ss_pred HHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhh
Confidence 44444324443332222 33555666666777765543 33333 6777777777777 6666
Q ss_pred HHHHHhcCcHHHH-HHHHHHHHHHhcCCC-CCCcccccccccCCHHHHHHHHHcCC-ChhHHh-hCCHHHHHHHhcCCch
Q 043190 457 FETCLRRGWCEMS-LFMLEYCKAVDRQIW-PHQHPLRQFDKELPAEILRKLEERGA-DLDRLQ-EMEEKDIGALIRYTPG 532 (1492)
Q Consensus 457 ~ei~~~~~~~~~~-~~~~~l~~~i~~~~w-~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~-~~~~~~~~~l~~~~~~ 532 (1492)
-.++...+....- ...-.+..+++.++- ++..+|..++ ++++..++++++.|+ +++++. ...+.++..+.+ .
T Consensus 642 ~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~-~~grvrar~ly~~g~~~~~~~~~~~~~~~~~~~~~---~ 717 (766)
T COG1204 642 ERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIR-GVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTG---I 717 (766)
T ss_pred hhhHhhhCCCccccccchhhhhhhhcCCChhhhccccccc-ccchhHHHHHHHhhhccHHHHHhhcChhhhhhhhh---h
Confidence 6666555443211 334456666777776 5566777777 788888888888887 777777 444555443332 2
Q ss_pred HHHHHHHhccCCceeEEEEEeecccceEEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeee
Q 043190 533 GRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTL 603 (1492)
Q Consensus 533 ~~~i~~~~~~~P~~~i~~~~~~~~~~~~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l 603 (1492)
+..+.. .+.+.+.|.-..|+..+.||..+.+.+...+.|.+.+.+
T Consensus 718 ~~~~~~--------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (766)
T COG1204 718 GERLVE--------------------------AILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALIL 762 (766)
T ss_pred HHHHHH--------------------------HHHHHhhhhhhcccchhhhcccCccccccceecchhhcc
Confidence 222222 123455677788888999999999999999988765543
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=450.87 Aligned_cols=544 Identities=26% Similarity=0.340 Sum_probs=392.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|++.+.|+|.-++.+-+-.|+|.+|.++|+||||++++++=+..+.. .+++.+|++|..|||+|.+++|++++++. |.
T Consensus 213 G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rYs~L-gl 290 (830)
T COG1202 213 GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERYSKL-GL 290 (830)
T ss_pred CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHhhcc-cc
Confidence 89999999999999866689999999999999999999987776654 38999999999999999999999999776 88
Q ss_pred EEEEEcCCCCcc-------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 765 EMVEMTGDYTPD-------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 765 ~v~~~~g~~~~~-------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
++..-.|..... ......+||||+|+|-++.++|.. ..+.+++.|||||+|++.+ +||+.++-++.|++
T Consensus 291 kvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 291 KVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred eEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 887776643322 122347899999999999999974 4589999999999999976 89999999999999
Q ss_pred HhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCc-cccccccccChhHHHHHhhcC
Q 043190 837 YISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK-FYCPRMNSMNKPAYAAICTHS 915 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 915 (1492)
++.. ..|+|++|||+.|+++++..|+.... ..+.||+|++.++.-.... ........+.+..+.......
T Consensus 368 ~l~~----~AQ~i~LSATVgNp~elA~~l~a~lV-----~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 368 YLFP----GAQFIYLSATVGNPEELAKKLGAKLV-----LYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HhCC----CCeEEEEEeecCChHHHHHHhCCeeE-----eecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 8753 79999999999999999999998763 4478999998876522111 111111111111222222334
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
-.+++|||++||+.|..+|..|.. -+..+.+||+||+..+|..++.
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~----------------------------------kG~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTG----------------------------------KGLKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhc----------------------------------CCcccccccCCCcHHHHHHHHH
Confidence 568999999999999999988833 2567899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH---
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK--- 1072 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~--- 1072 (1492)
.|.++++.++|+|.+++.|||+|+-.||+.+- --...++++.+|.||.|||||++++..|.+|+++.+...
T Consensus 485 ~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~ 558 (830)
T COG1202 485 AFAAQELAAVVTTAALAAGVDFPASQVIFESL------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHA 558 (830)
T ss_pred HHhcCCcceEeehhhhhcCCCCchHHHHHHHH------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcc
Confidence 99999999999999999999999998886311 011246789999999999999999999999999876542
Q ss_pred -------HHHHHhh-cCCCceeeccccc-chhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHH
Q 043190 1073 -------SFYKKFL-YEPFPVESSLRDQ-LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLS 1143 (1492)
Q Consensus 1073 -------~~~~~~l-~~~~pies~l~~~-l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~ 1143 (1492)
+.--+++ .++.|+.-.-.+. -.+.+++ ..|...+.++.- -+ |+...|....
T Consensus 559 ~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~-~v-----------~~~~~g~~~~------ 618 (830)
T COG1202 559 SMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIE-RV-----------NSLMLGAAFD------ 618 (830)
T ss_pred cccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHh-hc-----------ChhhccccCC------
Confidence 2223344 4455655443332 2233333 333334433221 11 2222222110
Q ss_pred HHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCC
Q 043190 1144 SYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHN 1223 (1492)
Q Consensus 1144 ~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~ 1223 (1492)
.+.++..|++.|+|..+++.+.+|+.|+++|.+.+.|.++..+...+.... +-+.+++.-..|+...+...
T Consensus 619 ------~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~ 689 (830)
T COG1202 619 ------PKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGF 689 (830)
T ss_pred ------HHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhhhccC---ChHhHhhccccccccccChH
Confidence 247899999999999888889999999999999999999999987753333 34556666667776665543
Q ss_pred hhHHHHH-hhcccceeec----------CCCCC--Chh--HHHHHHHHHHhcC------------------------CC-
Q 043190 1224 EDNHNEA-LSQRVRFAVD----------NNRLD--DPH--VKANLLFQAHFSR------------------------LD- 1263 (1492)
Q Consensus 1224 e~~~l~~-l~~~~~~~~~----------~~~~~--~~~--~K~~lLlqa~l~r------------------------~~- 1263 (1492)
-...+.. +...+|..+. ...+. +|. .|.+++.++.++. .+
T Consensus 690 l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p 769 (830)
T COG1202 690 LKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDP 769 (830)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCH
Confidence 2222211 1122221110 00111 233 3444555555442 11
Q ss_pred ----------CCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043190 1264 ----------LPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVM 1311 (1492)
Q Consensus 1264 ----------l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~ 1311 (1492)
..+..|++|....++++.|++.|.-.||..++--.....+..+.+-+.
T Consensus 770 ~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie 827 (830)
T COG1202 770 SQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKIE 827 (830)
T ss_pred HHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 123457899999999999999999999987766555556666665554
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=453.01 Aligned_cols=305 Identities=35% Similarity=0.627 Sum_probs=232.2
Q ss_pred cccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHH
Q 043190 1172 PTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKA 1251 (1492)
Q Consensus 1172 ~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~ 1251 (1492)
||++|++||+|||+++|+..|...+++..+..++|++||.|.||.++++|++|+..+++|.+.+|++.+...+++++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999888666788999999
Q ss_pred HHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHH
Q 043190 1252 NLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNND 1331 (1492)
Q Consensus 1252 ~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~ 1331 (1492)
++||||||+|+++|+++|..|+.+|+++++||++||+|+|..+||++++.++|+|+|||+||+|++ .+||+||||++++
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~-~~~L~Qlp~i~~~ 159 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDS-DSPLLQLPHIGEE 159 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TT-S-GGGGSTT--HH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCC-CChhhcCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999965 8999999999999
Q ss_pred HHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcCCCceEEEEEEEeccCCCCCeEEEEEEEEeccCCCCC
Q 043190 1332 LLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNT 1409 (1492)
Q Consensus 1332 ~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~~~~~~~~l~v~l~~~~~~~~~ 1409 (1492)
.+++|.++|+.++++|.++++++++.+++ +..++++.++++++|.++|++++.+.+......++++|++++.+
T Consensus 160 ~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~----- 234 (314)
T PF02889_consen 160 SLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKF----- 234 (314)
T ss_dssp HHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESS-----
T ss_pred HHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEccc-----
Confidence 99999999999999999999999999985 45689999999999999999888775442114488999999876
Q ss_pred CccccccCCCCccceEEEEEEeCCCCeEEEEEEeec-CC--c--ceEEEEecCCCCCc--ceEEEEEEeCCCCCccEEEE
Q 043190 1410 SRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISF-SD--R--LNTHMELPSGITTF--QGMKLVVVSDCYLGFEQEHS 1482 (1492)
Q Consensus 1410 ~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~-~~--~--~~~~~~~p~~~~~~--~~~~v~~~sd~y~G~D~~~~ 1482 (1492)
.+.++||+.|.|+||++|||+++|+++.++|+++ ++ . ...+|.+|.. +|. ++|+++++||+|+|+|++++
T Consensus 235 --~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~-~~~~~~~~~v~v~sd~y~G~d~~~~ 311 (314)
T PF02889_consen 235 --SWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIP-VGPRPYQYTVYVISDSYLGLDQEVP 311 (314)
T ss_dssp --S-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS--EE--EEEEEEEEESS-SS--EEEE
T ss_pred --ccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCC-CCCCCceEEEEEEECCccccceEEE
Confidence 3445999999999999999999999999999999 43 2 2367778874 244 99999999999999999999
Q ss_pred EEE
Q 043190 1483 IEA 1485 (1492)
Q Consensus 1483 i~~ 1485 (1492)
|++
T Consensus 312 i~~ 314 (314)
T PF02889_consen 312 INF 314 (314)
T ss_dssp EEE
T ss_pred eeC
Confidence 975
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=445.21 Aligned_cols=302 Identities=35% Similarity=0.596 Sum_probs=274.8
Q ss_pred cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhH
Q 043190 1170 VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHV 1249 (1492)
Q Consensus 1170 ~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 1249 (1492)
+.+|++|++||+|||++.|++.|...+.+.++..++|+++|.|.||.++++|++|+..+++|.+.++++......++++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57899999999999999999999999999999999999999999999999999999999999998887765556778999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCC
Q 043190 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMN 1329 (1492)
Q Consensus 1250 K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~ 1329 (1492)
|+++||||||+|++++.++|.+|+.+|+++++||++||+|++..+||++++.++++|+|||+||+|++ .+||+||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~-~~~L~Qlp~i~ 160 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPT-DSPLLQLPHLP 160 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCC-CCccccCCCCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCC--chHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEeccCC
Q 043190 1330 NDLLGTLRARGISTVQQLLDIPKENLQTVIGN--FPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKMNSW 1406 (1492)
Q Consensus 1330 ~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~--~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~ 1406 (1492)
++.+++|.++|+.++++|.+++.+++..+++. ..+++++++++++|+++|++++++... ..+..+++++.+++.+.
T Consensus 161 ~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~- 239 (312)
T smart00611 161 EEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDE- 239 (312)
T ss_pred HHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccc-
Confidence 99999999999999999999999999988763 568999999999999999999877533 45677888888887531
Q ss_pred CCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCcc-----eEEEEecCCCCCcceEEEEEEeCCCCCccEEE
Q 043190 1407 KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRL-----NTHMELPSGITTFQGMKLVVVSDCYLGFEQEH 1481 (1492)
Q Consensus 1407 ~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~~-----~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~ 1481 (1492)
+..|.|+||++|||.++|+|++++++++.... ..+|.+|... |.+.|.|+++||+|+|+|+++
T Consensus 240 -----------~~~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~-~~~~~~v~v~SD~y~g~d~~~ 307 (312)
T smart00611 240 -----------IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATE-GNYQYTLRLVSDSYLGCDQEY 307 (312)
T ss_pred -----------ccCCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCC-CcceEEEEEEecccCCcceEE
Confidence 12589999999999999999999999885543 3567789764 779999999999999999999
Q ss_pred EEEE
Q 043190 1482 SIEA 1485 (1492)
Q Consensus 1482 ~i~~ 1485 (1492)
++++
T Consensus 308 ~i~~ 311 (312)
T smart00611 308 PLSF 311 (312)
T ss_pred EEee
Confidence 9986
|
|
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=443.49 Aligned_cols=307 Identities=36% Similarity=0.675 Sum_probs=289.5
Q ss_pred eEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCccccc-CCCCChh
Q 043190 339 FYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK-GGPSNKH 417 (1492)
Q Consensus 339 ~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~-~~~~~~~ 417 (1492)
+.+|++|+++|+|||+++|+..|.+.+++.++..++|+++|.|+||.++++|.+|+.++++|.+. ++++.+ .....++
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~-~~~~~~~~~~~~~~ 80 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEK-LPIRLENPSLDDPH 80 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHh-CCcCcCCCCCCCch
Confidence 57999999999999999999999999999999999999999999999999999999999999998 666554 4567899
Q ss_pred HHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccC
Q 043190 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKEL 497 (1492)
Q Consensus 418 ~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i 497 (1492)
.|+++||||||+|++++.+++.+|+.+|+++|+||++||+|||..+||+..+.++++|+|||+||+|++++||+||| ++
T Consensus 81 ~K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp-~i 159 (312)
T smart00611 81 VKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLP-HL 159 (312)
T ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCC-CC
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEeecccceEEEEEEEecCCcccCC
Q 043190 498 PAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDH 575 (1492)
Q Consensus 498 ~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~i~~~~~~~f~~~~~ 575 (1492)
+++.+++|+++|+ ++++|.++++++++.+++ +++++++|.+++++||++++++.++|++....++.+++++.|.|+..
T Consensus 160 ~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~ 239 (312)
T smart00611 160 PEEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDE 239 (312)
T ss_pred CHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccc
Confidence 9999999999998 999999999999999999 55899999999999999999999999999999999999999999999
Q ss_pred cCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcccccceeEEecc
Q 043190 576 FHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISF 649 (1492)
Q Consensus 576 ~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl~~~~~~~i~~ 649 (1492)
+|++.|+||+||+|.++++|++.++++++++.... ...++|.+|...+. ++|.++++||+|+|++...++++
T Consensus 240 ~~~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~-~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~ 311 (312)
T smart00611 240 IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSE-EVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSF 311 (312)
T ss_pred ccCCcccEEEEEEeCCCCEEEEEEEEEEEeecCCC-cEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEee
Confidence 99999999999999999999999999998876544 67889999987665 89999999999999999988875
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=429.50 Aligned_cols=306 Identities=33% Similarity=0.606 Sum_probs=240.3
Q ss_pred eCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccc-cCCCCChhHH
Q 043190 341 CTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEV-KGGPSNKHGK 419 (1492)
Q Consensus 341 ~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~-~~~~~~~~~K 419 (1492)
||++|+|||+|||+++||..|.+.+++.++..++|+++|.|.||+++++|++|++++++|+++ +|+++ ++....++.|
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~-~~~~~~~~~~~~~~~K 79 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKK-IPYPIKKEKINDPHIK 79 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCC-SSS--STS-TTSHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHh-cccCccccccccHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999998 88888 7778899999
Q ss_pred HHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCH
Q 043190 420 ISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPA 499 (1492)
Q Consensus 420 ~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~ 499 (1492)
+++||||||+|++++..+|.+|+.+|+++++||++||+|||..+||+..+.++++|+|||+||+|++.+||+||| ++++
T Consensus 80 ~~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp-~i~~ 158 (314)
T PF02889_consen 80 AFVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLP-HIGE 158 (314)
T ss_dssp HHHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGST-T--H
T ss_pred HHHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCC-CCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999998899999999 9999
Q ss_pred HHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEeecccce---EEEEEEEecCCcccC
Q 043190 500 EILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSPITRTV---LKIGLAITPEFTWKD 574 (1492)
Q Consensus 500 ~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~---~~i~~~~~~~f~~~~ 574 (1492)
+.+++|.++|+ |+++|.++++++++.+++ ++++++++.+++++||+++++++++|++... +++.|.+++.|.|+.
T Consensus 159 ~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~ 238 (314)
T PF02889_consen 159 ESLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSD 238 (314)
T ss_dssp HHHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SS
T ss_pred HHHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEccccccc
Confidence 99999999997 999999999999999998 8899999999999999999999999998877 999999999999999
Q ss_pred CcCCc-ccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeecc-CCCCCcceeeeccCcccccceeEEecc
Q 043190 575 HFHGA-AQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIF-EPHPPQYYIRAVSDSWLHAEAFYCISF 649 (1492)
Q Consensus 575 ~~h~~-~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~-~p~p~~~~v~~~Sd~wl~~~~~~~i~~ 649 (1492)
+||+. .++||++|+|.+++.+++++++++.++... ....++|.+|.. .|.+.+|.++++||+|+|.+...+++|
T Consensus 239 ~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~-~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 239 RFPKKKKESWWLFVGDSKNNELLHFERITISKKKSK-DTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp T-SS--B--EEEEEEECCCTEEEEEEEE---SS--E-EEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccC-CcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 99988 999999999999999999999999322111 267888999875 555589999999999999999888765
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=386.58 Aligned_cols=337 Identities=20% Similarity=0.275 Sum_probs=259.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~ 751 (1492)
+.++..+++- ++..|+++|++++|.++ +|+++|..|.||||||.+|.+||++.+..++ ...+++++|||+||.|+.
T Consensus 68 v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~ 146 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIA 146 (476)
T ss_pred cCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHH
Confidence 3445555544 89999999999999998 8999999999999999999999999887653 478999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~ 827 (1492)
+.+.. ++...|+++..+.|+.+.... ...+++|+|+|||+|...+.+... ..+..++++|+||||.+. .+++..
T Consensus 147 e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg-f~le~lk~LVlDEADrlLd~dF~~~ 224 (476)
T KOG0330|consen 147 EQFEA-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG-FSLEQLKFLVLDEADRLLDMDFEEE 224 (476)
T ss_pred HHHHH-hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC-ccHHHhHHHhhchHHhhhhhhhHHH
Confidence 99876 777679999999998765432 345899999999998777775332 348899999999999765 478888
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccC-cEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVP-LEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
++.|+..+. ...|.+++|||++. ...+.. -..+.+.....+..++.++ +...+.-++.. .+.
T Consensus 225 ld~ILk~ip-------~erqt~LfsATMt~kv~kL~r-asl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k--------~K~ 288 (476)
T KOG0330|consen 225 LDYILKVIP-------RERQTFLFSATMTKKVRKLQR-ASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK--------DKD 288 (476)
T ss_pred HHHHHHhcC-------ccceEEEEEeecchhhHHHHh-hccCCCeEEeccchhcchHHhhhheEecccc--------ccc
Confidence 888877653 58899999999975 233321 1111111111122222222 11111111111 111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
..+-.+.+...++++||||++...+..++-.|. .+++....+||.|
T Consensus 289 ~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~----------------------------------~lg~~a~~LhGqm 334 (476)
T KOG0330|consen 289 TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR----------------------------------NLGFQAIPLHGQM 334 (476)
T ss_pred hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH----------------------------------hcCcceecccchh
Confidence 222334445667999999999999999987663 3478889999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
++..|...++.|++|...|||||++++||+|+|.+++||+ +|+| ..+|+||+||+||+| .+|.+
T Consensus 335 sq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN------------yDiP~~skDYIHRvGRtaRaG--rsG~~ 400 (476)
T KOG0330|consen 335 SQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN------------YDIPTHSKDYIHRVGRTARAG--RSGKA 400 (476)
T ss_pred hHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe------------cCCCCcHHHHHHHcccccccC--CCcce
Confidence 9999999999999999999999999999999999999999 4555 779999999999999 99999
Q ss_pred EEEecCCcHHHHHHh
Q 043190 1064 VILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~ 1078 (1492)
+.+++..+.+.|.++
T Consensus 401 ItlVtqyDve~~qrI 415 (476)
T KOG0330|consen 401 ITLVTQYDVELVQRI 415 (476)
T ss_pred EEEEehhhhHHHHHH
Confidence 999999887776654
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=440.72 Aligned_cols=341 Identities=19% Similarity=0.250 Sum_probs=258.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||+.|+++|.++++.++ .|+|+++++|||||||++|.+|+++.+...++.++||++|||+||.|+++.+.. +. ..++
T Consensus 33 g~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~-l~-~~~i 109 (742)
T TIGR03817 33 GIHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRE-LT-LRGV 109 (742)
T ss_pred CCCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHH-hc-cCCe
Confidence 89999999999999998 889999999999999999999999998776678999999999999999999987 44 3378
Q ss_pred EEEEEcCCCCcchhc--cCCCcEEEECchhhhH-hhhcc-cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhh
Q 043190 765 EMVEMTGDYTPDLMA--LLSADIIISTPEKWDG-ISRNW-HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~--~~~~~Iiv~Tpe~l~~-l~~~~-~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~ 840 (1492)
++..++|+...+.+. ..+++|+|+||+++.. ++... ....+++++++|||||||.+.+.+|..+..++.+++.+..
T Consensus 110 ~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~ 189 (742)
T TIGR03817 110 RPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCA 189 (742)
T ss_pred EEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHH
Confidence 899999998754432 3468999999998853 33221 1123478999999999999876789999999999998887
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcE-EEEeccC-----Ccccccccccc---ChhHHHHH
Q 043190 841 QTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLE-VHIQGYP-----GKFYCPRMNSM---NKPAYAAI 911 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~-~~~~~~~-----~~~~~~~~~~~---~~~~~~~l 911 (1492)
..+.++|++++|||++|+.++++++...+..++ .....+.... ..+...+ ........... .......+
T Consensus 190 ~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l 267 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAAAASRLIGAPVVAV--TEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADL 267 (742)
T ss_pred hcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEE--CCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHH
Confidence 777789999999999998888877654443222 2222222111 1110000 00000000000 00111122
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
. ..+.++||||+|++.|+.++..+.+..... ...++.++..|||++++++|+
T Consensus 268 ~--~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~--------------------------~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 268 V--AEGARTLTFVRSRRGAELVAAIARRLLGEV--------------------------DPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred H--HCCCCEEEEcCCHHHHHHHHHHHHHHHHhh--------------------------ccccccchhheecCCCHHHHH
Confidence 1 236799999999999999998886543210 011245788999999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
.+++.|++|++++||||+++++|||+|++++||+ |+ ++.+..+|+||+|||||.| ..|.+++++.+.
T Consensus 320 ~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~------~P~s~~~y~qRiGRaGR~G--~~g~ai~v~~~~ 386 (742)
T TIGR03817 320 ELERALRDGELLGVATTNALELGVDISGLDAVVI----AG------FPGTRASLWQQAGRAGRRG--QGALVVLVARDD 386 (742)
T ss_pred HHHHHHHcCCceEEEECchHhccCCcccccEEEE----eC------CCCCHHHHHHhccccCCCC--CCcEEEEEeCCC
Confidence 9999999999999999999999999999999998 44 3346999999999999988 789999998754
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=451.13 Aligned_cols=396 Identities=22% Similarity=0.331 Sum_probs=283.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-------CCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------QSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-------~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+|..|+|+|.++++.++ .|+|++++||||||||++|.+|++..+.. .++.+++|++|+|+|+.|+++++...
T Consensus 29 ~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred ccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 78899999999999987 78999999999999999999999987653 12467999999999999999876642
Q ss_pred hh----------hcc-CCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-C
Q 043190 758 LV----------SQL-GKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-A 822 (1492)
Q Consensus 758 ~~----------~~~-g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~ 822 (1492)
+. ... ++++...+||.....+. ...++|+|||||+|..++.+......++++++|||||+|.+. +
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAEN 187 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccC
Confidence 21 112 67889999998765432 246899999999998888764444468899999999999886 4
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcc------eeEecCCCccccCcEEEEeccCCccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEI------GLFNFKPSVRPVPLEVHIQGYPGKFY 896 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~------~~~~~~~~~r~~~l~~~~~~~~~~~~ 896 (1492)
.+|..++..+.++..+. +...|+|++|||+++.++++.|++.... ..+......++..+..... .. ...
T Consensus 188 ~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p-~~-~l~ 262 (876)
T PRK13767 188 KRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISP-VD-DLI 262 (876)
T ss_pred ccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEecc-Cc-ccc
Confidence 79999999999998764 3478999999999999999999975321 1111111112222221110 00 000
Q ss_pred cccccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhc
Q 043190 897 CPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQ 975 (1492)
Q Consensus 897 ~~~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 975 (1492)
...........+..+... ..++++||||||++.|+.++..|.+.... ...+
T Consensus 263 ~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~----------------------------~~~~ 314 (876)
T PRK13767 263 HTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE----------------------------EYDE 314 (876)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh----------------------------hccc
Confidence 000111112223333221 34678999999999999999888653211 0124
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCC
Q 043190 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRP 1055 (1492)
Q Consensus 976 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~ 1055 (1492)
.++.+|||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.++.+|+||+|||||.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~------P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGS------PKSVSRLLQRIGRAGHR 384 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCC------CCCHHHHHHhcccCCCC
Confidence 68999999999999999999999999999999999999999999999997 443 33699999999999986
Q ss_pred CC-CCceEEEEEecCCc-HH---HHHHhhc---CCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecc
Q 043190 1056 QY-DQHGKAVILVHEPK-KS---FYKKFLY---EPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLA 1126 (1492)
Q Consensus 1056 g~-~~~G~~i~l~~~~~-~~---~~~~~l~---~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~ 1126 (1492)
+. ...|.++... ..+ .+ ..+.+.. ++..+...-.+.|..|+.+.++.+ ..+.+++.+++..||.|+.+.
T Consensus 385 ~g~~~~g~ii~~~-~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 461 (876)
T PRK13767 385 LGEVSKGRIIVVD-RDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDLS 461 (876)
T ss_pred CCCCCcEEEEEcC-chhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccCC
Confidence 42 2345544432 222 11 1122221 122222233456888988877775 568999999999999998653
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=413.35 Aligned_cols=651 Identities=23% Similarity=0.333 Sum_probs=449.3
Q ss_pred hhcCCCCCCHHHHHHHH--hhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 682 ALYNFSHFNPIQTQIFH--ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~--~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
..+|...++.+|.+|+. .++ .++|.|.++||+.|||+++++.+++.... ....++.+.|..+.+.+....+.....
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhcc
Confidence 33488889999999985 566 88999999999999999999999987655 267899999999999998888877444
Q ss_pred hccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHh
Q 043190 760 SQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYI 838 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~ 838 (1492)
. +|+.|..+.|...+.. ..+..++.|||.|+-..+.........+..+++||+||.|++++ +||..+|.+++.+.+.
T Consensus 295 ~-~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 295 D-LGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred c-cCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 4 4999999988776543 34567999999999888877766666788999999999999986 7999999999999876
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccc-ccccc--------------
Q 043190 839 SSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP-RMNSM-------------- 903 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~-~~~~~-------------- 903 (1492)
.... ..|+||||||++|..+++.|++... +...+||+++...+..-. ..+.. +....
T Consensus 373 ~~~~--~~~iIGMSATi~N~~lL~~~L~A~~-----y~t~fRPv~L~E~ik~G~-~i~~~~r~~~lr~ia~l~~~~~g~~ 444 (1008)
T KOG0950|consen 373 NLET--SVQIIGMSATIPNNSLLQDWLDAFV-----YTTRFRPVPLKEYIKPGS-LIYESSRNKVLREIANLYSSNLGDE 444 (1008)
T ss_pred cccc--ceeEeeeecccCChHHHHHHhhhhh-----eecccCcccchhccCCCc-ccccchhhHHHHHhhhhhhhhcccC
Confidence 6433 4899999999999999999998432 466789999876653211 11111 11100
Q ss_pred ChhHHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC-CChHHHHHH---HhhcCcHHHHHHhccc
Q 043190 904 NKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG-MPEEDLQMV---LSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 904 ~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~~~~~~~ 977 (1492)
+...+..+ ....++.++||||++|+.|+.+|..+....+.......+.. ......... ....-|..+..++.+|
T Consensus 445 dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 445 DPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 00000001 11234567999999999999999887776544322222222 011111111 1222467788899999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+++||+|++.++|+.|+..|+.|.+.|++||+++++|+|+|+.+|+|. .+++.. -.+...+|.||+|||||+|.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir-aP~~g~-----~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR-APYVGR-----EFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe-CCcccc-----chhhhhhHHhhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999997 222222 12357799999999999999
Q ss_pred CCceEEEEEecCCcHHHHHHhhcCCC-ceeeccccc----chhhhHHHhhhCcccCHHHHHHHHhhchheeecccCcccc
Q 043190 1058 DQHGKAVILVHEPKKSFYKKFLYEPF-PVESSLRDQ----LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~~~l~~~~-pies~l~~~----l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y 1132 (1492)
|..|.+++++...+...+..++..+. |..|++.+. ....++..|..+...+.+|...+...|+++..-. |.+-
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~--~~~~ 676 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEK--PENV 676 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccc--hhhh
Confidence 99999999999999888888887665 456666443 2234556667777788999999999998876421 1111
Q ss_pred CCCCCCcccHHHHHHHHHHHHH-HHhHHCCCcee-cCC--ccccccchhhhhhccccHHHHHHHHhccCCC---CCHHHH
Q 043190 1133 GLEDTEAEGLSSYLSRLVQNTF-EDLEDSGCVKM-TED--TVEPTMLGTIASQYYLSYVTVSMFGSNIGPD---TSLEVF 1205 (1492)
Q Consensus 1133 ~~~~~~~~~~~~~l~~~i~~~l-~~L~~~~~i~~-~~~--~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~---~~~~~l 1205 (1492)
..+. +..+..+. +..+. +.+....+|.. ..+ ...+|.+|++.=.-++++.-+..++..+... ...+.-
T Consensus 677 ~~~l---e~~s~ql~--~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~ 751 (1008)
T KOG0950|consen 677 REQL---EMESDQLV--INDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESS 751 (1008)
T ss_pred hhcc---cchhhhhc--cchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccc
Confidence 1111 00000000 00000 12222222221 000 0227999999988899998888777655432 222222
Q ss_pred HHHHhCCCCCCCCcCCC--------------ChhHHHHHhh-------cccceeecCCCCCC-h---hHHHHHHHHHHhc
Q 043190 1206 LHILSGASEYDELPVRH--------------NEDNHNEALS-------QRVRFAVDNNRLDD-P---HVKANLLFQAHFS 1260 (1492)
Q Consensus 1206 l~ils~a~Ef~~i~~R~--------------~e~~~l~~l~-------~~~~~~~~~~~~~~-~---~~K~~lLlqa~l~ 1260 (1492)
++++-....|.+..--. .+....+.+. +.+.-.. .....+ + ..-+.+.+|..++
T Consensus 752 lh~lylvtP~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs-~~~~~~~~~~~r~y~~l~L~~li~ 830 (1008)
T KOG0950|consen 752 LHLLYLVTPYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQS-VRNLQNVQKRKRLYVALALQKLIN 830 (1008)
T ss_pred cceeeeecchHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccc-cccccchhHHHHHHHHHHHHHHHh
Confidence 23333323321110000 1111111110 0000000 011111 1 2336678999999
Q ss_pred CCCCCC--cch---HhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHhhcccCCCCcccccCCCCHHHHH
Q 043190 1261 RLDLPI--SDY---VTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMH-LLQMVMQGLWFEQDSALWMFPCMNNDLLG 1334 (1492)
Q Consensus 1261 r~~l~~--~~l---~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~-l~q~i~q~~w~~~~~~L~qlp~i~~~~~~ 1334 (1492)
..++.. .+| .+=+...++++.....+..-.|.+.+|. +...++. +.+.+..|.-.+ ..||+.+|++...+++
T Consensus 831 espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~-~~~~l~~~~~~rl~~g~~~e-L~~Lmrv~~~~~~RAr 908 (1008)
T KOG0950|consen 831 ESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWF-PLRALLSEFYGRLSFGGHAE-LIPLMRVPDVKAERAR 908 (1008)
T ss_pred hCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhc-chHHHHHHHHHHHhccchhh-hhhhhcCchhHHHHHH
Confidence 988762 455 5677888999999999999889999998 4444444 778888888777 8999999999999999
Q ss_pred HHHhCCCCCHHHHhcCCHHHHhhhhC
Q 043190 1335 TLRARGISTVQQLLDIPKENLQTVIG 1360 (1492)
Q Consensus 1335 ~l~~~~i~s~~~l~~~~~~~~~~~l~ 1360 (1492)
.|+.+|++|+.++++.++.++.+.+.
T Consensus 909 ~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 909 QLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHHhhccchHHHhcCChHHHHHHhh
Confidence 99999999999999998877766543
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=408.62 Aligned_cols=327 Identities=20% Similarity=0.245 Sum_probs=250.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-------CCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------QSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-------~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
||+.|+|||.++|+.++ .|++++..|.||||||++|++|++.++.. .+++++|+++|||+||.|+.+.+.+
T Consensus 110 g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~- 187 (519)
T KOG0331|consen 110 GFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE- 187 (519)
T ss_pred CCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH-
Confidence 99999999999999999 89999999999999999999999998875 2468999999999999999998877
Q ss_pred hhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVS 833 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~ 833 (1492)
++..+++++.+++|+.+...+ ...+.+|+|+||+++.+++.. ....++++.++|+||||.|. .++.++++.|+.
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 666557888889998765432 234689999999999999987 44558999999999999765 478889988888
Q ss_pred HHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCC--ccccCcEEEEeccCCccccccccccChhHHHH
Q 043190 834 RMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPS--VRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA 910 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~--~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1492)
.+. +...|.++.|||.|. ...++.-+-..+..+...... .....+...+. .+. .......+...
T Consensus 266 ~i~------~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive------~~~-~~~K~~~l~~l 332 (519)
T KOG0331|consen 266 QIP------RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVE------VCD-ETAKLRKLGKL 332 (519)
T ss_pred hcC------CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhh------hcC-HHHHHHHHHHH
Confidence 762 234489999999987 455554332233222111110 00000000000 011 01111112222
Q ss_pred Hhh--cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 911 ICT--HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 911 l~~--~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
+.. ...++++||||+|++.|..++..+... ++++..+||+.++.
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----------------------------------~~~a~~iHGd~sQ~ 378 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRK----------------------------------GWPAVAIHGDKSQS 378 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhc----------------------------------CcceeeecccccHH
Confidence 222 346779999999999999999877432 46789999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+..|||||+++++|+|+|++++||+ ||. +-+.++|+||+||+||+| ..|.++.|++
T Consensus 379 eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydf------P~~vEdYVHRiGRTGRa~--~~G~A~tfft 446 (519)
T KOG0331|consen 379 ERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDF------PNNVEDYVHRIGRTGRAG--KKGTAITFFT 446 (519)
T ss_pred HHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCC------CCCHHHHHhhcCccccCC--CCceEEEEEe
Confidence 9999999999999999999999999999999999999 543 225999999999999987 8999999998
Q ss_pred CCcHHH
Q 043190 1069 EPKKSF 1074 (1492)
Q Consensus 1069 ~~~~~~ 1074 (1492)
..+...
T Consensus 447 ~~~~~~ 452 (519)
T KOG0331|consen 447 SDNAKL 452 (519)
T ss_pred HHHHHH
Confidence 876544
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=421.70 Aligned_cols=406 Identities=23% Similarity=0.315 Sum_probs=312.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.|..|||.|.++++.+. +|+|++|+||||||||+++.+|++..+... .+-.+|||+|.|||.+++..++....
T Consensus 19 ~~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~ 97 (814)
T COG1201 19 KFTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPL 97 (814)
T ss_pred hcCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHH
Confidence 68999999999999998 899999999999999999999999987654 13579999999999999999998755
Q ss_pred hhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc-CCCCccHHHHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL-GAERGPILEVIVSR 834 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l-~~~~g~~~~~i~~~ 834 (1492)
. .+|+.+..-+||++...+. .+.+||+++|||.|..++.....+..+.+++++||||+|.+ +++||.++...+.|
T Consensus 98 ~-~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeR 176 (814)
T COG1201 98 R-ELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLER 176 (814)
T ss_pred H-HcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHH
Confidence 5 4599999999999876543 34679999999999888877666778999999999999976 46899999999999
Q ss_pred HHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh
Q 043190 835 MRYISSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT 913 (1492)
Q Consensus 835 l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 913 (1492)
++.+.. ++|.||+|||+.+++++++|++... ...+.-....++..+.+.......... .......+..+..
T Consensus 177 L~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~----~~~~~~~~~~i~~ 248 (814)
T COG1201 177 LRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD----EELWAALYERIAE 248 (814)
T ss_pred HHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----cchhHHHHHHHHH
Confidence 997753 8899999999999999999998875 222222333444444443322111111 1111222222221
Q ss_pred c-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 914 H-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 914 ~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
. ...+.+|||+|||..++.++..|.+.. ...+..|||+++.+.|..
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~---------------------------------~~~i~~HHgSlSre~R~~ 295 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLG---------------------------------PDIIEVHHGSLSRELRLE 295 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhc---------------------------------CCceeeecccccHHHHHH
Confidence 1 334589999999999999998885532 267999999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
++++|++|+++++|||++++-|||+.+++.||+ |.++ .+++.++||+||+|+. .+....+++++.+ ..
T Consensus 296 vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP------~sV~r~lQRiGRsgHr-~~~~Skg~ii~~~-r~ 363 (814)
T COG1201 296 VEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSP------KSVNRFLQRIGRAGHR-LGEVSKGIIIAED-RD 363 (814)
T ss_pred HHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCc------HHHHHHhHhccccccc-cCCcccEEEEecC-HH
Confidence 999999999999999999999999999999998 5433 3689999999999984 4566778888776 33
Q ss_pred HHHHH------hhc---CCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHH
Q 043190 1073 SFYKK------FLY---EPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLS 1143 (1492)
Q Consensus 1073 ~~~~~------~l~---~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~ 1143 (1492)
+.++. ... ++.++...-.+.|.+|+++.+... --+.+++.+.+..+|.|+.+. .
T Consensus 364 dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~---------~------- 426 (814)
T COG1201 364 DLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLS---------R------- 426 (814)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCC---------H-------
Confidence 33222 111 134444555677899999888887 677999999999999987543 1
Q ss_pred HHHHHHHHHHHHHhHH--CCCceec
Q 043190 1144 SYLSRLVQNTFEDLED--SGCVKMT 1166 (1492)
Q Consensus 1144 ~~l~~~i~~~l~~L~~--~~~i~~~ 1166 (1492)
+..++.++.|.. .+.+...
T Consensus 427 ----e~f~~v~~~l~~~~~~~~~i~ 447 (814)
T COG1201 427 ----EDFRLVLRYLAGEKNVYAKIW 447 (814)
T ss_pred ----HHHHHHHHHHhhcccceeEEe
Confidence 334567777777 5555443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=377.04 Aligned_cols=356 Identities=20% Similarity=0.254 Sum_probs=274.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC----CceEEEEcccHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVR 748 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~----~~~~l~i~P~r~La~ 748 (1492)
|..++++++. ||..|+|+|.++||.++ -|++++.||.||||||.+|.+|+|+.+.-.+ ..++|+++|||+|+.
T Consensus 188 LSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELai 266 (691)
T KOG0338|consen 188 LSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAI 266 (691)
T ss_pred cchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHH
Confidence 3445566654 99999999999999887 7999999999999999999999999876433 358999999999999
Q ss_pred HHHHHHHHHhhhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 749 q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
|++...++ ++.+..+.|+...|+.+...+. ...+||+|+|||+|.+.+++... ..++++.++|+||||.|.+ .+
T Consensus 267 Qv~sV~~q-laqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s-f~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 267 QVHSVTKQ-LAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS-FNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred HHHHHHHH-HHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC-ccccceeEEEechHHHHHHHHH
Confidence 99988776 7777789999999988754332 34789999999999999998543 4589999999999997754 34
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
...+.. +...++.+.|.+++|||+.. .++++..--.++..++.-.+...+..+...+..+.. .....
T Consensus 345 ademnE-------ii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~-----~re~d 412 (691)
T KOG0338|consen 345 ADEMNE-------IIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP-----KREGD 412 (691)
T ss_pred HHHHHH-------HHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc-----ccccc
Confidence 334433 33345678999999999976 566666544455566654444444444433322111 01111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
....+..+....-...++||+.|++.|..+.-.| .+++..++-+||
T Consensus 413 Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~Ill----------------------------------GLlgl~agElHG 458 (691)
T KOG0338|consen 413 REAMLASLITRTFQDRTIVFVRTKKQAHRLRILL----------------------------------GLLGLKAGELHG 458 (691)
T ss_pred cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHH----------------------------------HHhhchhhhhcc
Confidence 2233444444444678999999999988775433 667888999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
+|++.+|...++.|++++++|||||+++++|+||+++.+||+ |+ .+.+...|+||+||+.|+| +.|.+
T Consensus 459 sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~------mP~t~e~Y~HRVGRTARAG--RaGrs 526 (691)
T KOG0338|consen 459 SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YA------MPKTIEHYLHRVGRTARAG--RAGRS 526 (691)
T ss_pred cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----cc------CchhHHHHHHHhhhhhhcc--cCcce
Confidence 999999999999999999999999999999999999999998 33 2334789999999999999 89999
Q ss_pred EEEecCCcHHHHHHhhcCCCceeecccc
Q 043190 1064 VILVHEPKKSFYKKFLYEPFPVESSLRD 1091 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~~~~pies~l~~ 1091 (1492)
+.|+.+++...++..+.......+.+..
T Consensus 527 VtlvgE~dRkllK~iik~~~~a~~klk~ 554 (691)
T KOG0338|consen 527 VTLVGESDRKLLKEIIKSSTKAGSKLKN 554 (691)
T ss_pred EEEeccccHHHHHHHHhhhhhcccchhh
Confidence 9999999988888888765444444443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=413.30 Aligned_cols=340 Identities=20% Similarity=0.252 Sum_probs=247.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--------CCCceEEEEcccH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--------QSDMKVVYIAPLK 744 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--------~~~~~~l~i~P~r 744 (1492)
|+....+.+. ||..|+|+|.++++.++ .|+|++++||||||||++|++|++..+.. ..++++||++|||
T Consensus 128 l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTr 206 (518)
T PLN00206 128 LPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTR 206 (518)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCH
Confidence 4444555544 99999999999999998 78999999999999999999999987532 1467899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 745 AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 745 ~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
+||.|+.+.++. +....+.++..+.|+..... ....+++|+|+|||+|..++.+. ...+++++++|+||||++.
T Consensus 207 eLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--~~~l~~v~~lViDEad~ml 283 (518)
T PLN00206 207 ELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--DIELDNVSVLVLDEVDCML 283 (518)
T ss_pred HHHHHHHHHHHH-HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccchheeEEEeecHHHHh
Confidence 999998887765 55544777766666543222 22346899999999998888763 4458899999999999875
Q ss_pred C-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccC-cEEEEeccCCccccc
Q 043190 822 A-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVP-LEVHIQGYPGKFYCP 898 (1492)
Q Consensus 822 ~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~-l~~~~~~~~~~~~~~ 898 (1492)
+ ++...+..++..+ +..|++++|||+++ .+.++.++..... .+......++.. +.........
T Consensus 284 ~~gf~~~i~~i~~~l--------~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~~v~q~~~~~~~----- 349 (518)
T PLN00206 284 ERGFRDQVMQIFQAL--------SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNKAVKQLAIWVET----- 349 (518)
T ss_pred hcchHHHHHHHHHhC--------CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCcceeEEEEeccc-----
Confidence 4 3444443333322 35799999999987 4567776654432 222222222211 1111110000
Q ss_pred cccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 899 RMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 899 ~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
......+...+... ....++||||+++..++.++..|... .+..
T Consensus 350 --~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~---------------------------------~g~~ 394 (518)
T PLN00206 350 --KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV---------------------------------TGLK 394 (518)
T ss_pred --hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc---------------------------------cCcc
Confidence 00011223333322 23468999999999999888766321 2456
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.|
T Consensus 395 ~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~------P~s~~~yihRiGRaGR~g- 463 (518)
T PLN00206 395 ALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDM------PNTIKEYIHQIGRASRMG- 463 (518)
T ss_pred eEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCC------CCCHHHHHHhccccccCC-
Confidence 889999999999999999999999999999999999999999999998 553 336899999999999988
Q ss_pred CCceEEEEEecCCcHHHHHHhh
Q 043190 1058 DQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
..|.+++|+++.+...+..+.
T Consensus 464 -~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 464 -EKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred -CCeEEEEEEchhHHHHHHHHH
Confidence 789999999887766555443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=403.92 Aligned_cols=335 Identities=17% Similarity=0.229 Sum_probs=248.3
Q ss_pred chhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-------CceEEEEcccHHHH
Q 043190 677 NNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-------DMKVVYIAPLKAIV 747 (1492)
Q Consensus 677 ~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-------~~~~l~i~P~r~La 747 (1492)
.+..+.+. ||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+.... ..++||++||++||
T Consensus 10 ~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa 88 (456)
T PRK10590 10 PDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELA 88 (456)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHH
Confidence 34444443 99999999999999998 7899999999999999999999999875421 24799999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~ 823 (1492)
.|+++.+.... ...++++..++|+...+.. ...+++|+|+||++|..++... ...+++++++||||||++.+ .
T Consensus 89 ~Qi~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~--~~~l~~v~~lViDEah~ll~~~ 165 (456)
T PRK10590 89 AQIGENVRDYS-KYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN--AVKLDQVEILVLDEADRMLDMG 165 (456)
T ss_pred HHHHHHHHHHh-ccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC--CcccccceEEEeecHHHHhccc
Confidence 99999988744 4448888888888765432 2346899999999998877653 33588999999999998754 3
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccc
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNS 902 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 902 (1492)
+...+..++. ..+...|++++|||+++ ..+++.++...+..+...........+...+.... ..
T Consensus 166 ~~~~i~~il~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--------~~ 230 (456)
T PRK10590 166 FIHDIRRVLA-------KLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD--------KK 230 (456)
T ss_pred cHHHHHHHHH-------hCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC--------HH
Confidence 3333333333 33457789999999987 46666665444432222111111111221111110 00
Q ss_pred cChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
........+.......++||||+++..++.++..|.. .++.+..+|
T Consensus 231 ~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------~g~~~~~lh 276 (456)
T PRK10590 231 RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNK----------------------------------DGIRSAAIH 276 (456)
T ss_pred HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHH----------------------------------CCCCEEEEE
Confidence 1112233334445567899999999999999877732 256788999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceE
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGK 1062 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~ 1062 (1492)
|++++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| ..|.
T Consensus 277 g~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~------P~~~~~yvqR~GRaGR~g--~~G~ 344 (456)
T PRK10590 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YEL------PNVPEDYVHRIGRTGRAA--ATGE 344 (456)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCC------CCCHHHhhhhccccccCC--CCee
Confidence 9999999999999999999999999999999999999999998 543 235789999999999988 7899
Q ss_pred EEEEecCCcHHHHH
Q 043190 1063 AVILVHEPKKSFYK 1076 (1492)
Q Consensus 1063 ~i~l~~~~~~~~~~ 1076 (1492)
+++++...+...+.
T Consensus 345 ai~l~~~~d~~~~~ 358 (456)
T PRK10590 345 ALSLVCVDEHKLLR 358 (456)
T ss_pred EEEEecHHHHHHHH
Confidence 99999877655443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=411.52 Aligned_cols=340 Identities=18% Similarity=0.203 Sum_probs=247.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~L 746 (1492)
++..+.+.+. ||..|+|+|.++++.++ +++|+|++||||||||++|++|++..+... .++.+||++|||+|
T Consensus 137 l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreL 215 (545)
T PTZ00110 137 FPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTREL 215 (545)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHH
Confidence 3444555554 99999999999999998 789999999999999999999998876532 35789999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~- 822 (1492)
|.|+.+.+.+ |....++++..+.|+...... ....++|+|+||++|..++.+. ...++++++|||||||++.+
T Consensus 216 a~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 216 AEQIREQCNK-FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--VTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HHHHHHHHHH-HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--CCChhhCcEEEeehHHhhhhc
Confidence 9999998877 555557888888887654321 2346899999999998888763 34588999999999998754
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCc-c-ccCcEEEEeccCCcccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSV-R-PVPLEVHIQGYPGKFYCPR 899 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~-r-~~~l~~~~~~~~~~~~~~~ 899 (1492)
.+.+.+..++.. .....|++++|||++. ...++.++.......+...... . ...+...+.... .
T Consensus 293 gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~------~ 359 (545)
T PTZ00110 293 GFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE------E 359 (545)
T ss_pred chHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe------c
Confidence 444444444433 3457899999999976 3455555432211111111100 0 001111111000 0
Q ss_pred ccccChhHHHHHhhcC-CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccce
Q 043190 900 MNSMNKPAYAAICTHS-PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978 (1492)
Q Consensus 900 ~~~~~~~~~~~l~~~~-~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 978 (1492)
......+...+.... .++++||||++++.|+.++..|.. .++.+
T Consensus 360 -~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~----------------------------------~g~~~ 404 (545)
T PTZ00110 360 -HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL----------------------------------DGWPA 404 (545)
T ss_pred -hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH----------------------------------cCCcE
Confidence 000011222222222 577999999999999999887732 24567
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC
Q 043190 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD 1058 (1492)
Q Consensus 979 ~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~ 1058 (1492)
..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+||+||.|
T Consensus 405 ~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~------P~s~~~yvqRiGRtGR~G-- 472 (545)
T PTZ00110 405 LCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDF------PNQIEDYVHRIGRTGRAG-- 472 (545)
T ss_pred EEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCC------CCCHHHHHHHhcccccCC--
Confidence 89999999999999999999999999999999999999999999998 553 335899999999999988
Q ss_pred CceEEEEEecCCcHHHHHHh
Q 043190 1059 QHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1059 ~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
..|.|+.|+++.+......+
T Consensus 473 ~~G~ai~~~~~~~~~~~~~l 492 (545)
T PTZ00110 473 AKGASYTFLTPDKYRLARDL 492 (545)
T ss_pred CCceEEEEECcchHHHHHHH
Confidence 89999999998776544433
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=366.52 Aligned_cols=376 Identities=19% Similarity=0.280 Sum_probs=279.9
Q ss_pred CcccccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCC
Q 043190 636 DSWLHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715 (1492)
Q Consensus 636 d~wl~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGs 715 (1492)
-.|-.....+.+++.+..+|.+-..+.+. ++|...|. .+... ||..|+|+|+++++..+ .++|+|..|.|||
T Consensus 222 rdwri~redynis~kg~~lpnplrnwEE~----~~P~e~l~--~I~~~-~y~eptpIqR~aipl~l-Q~rD~igvaETgs 293 (673)
T KOG0333|consen 222 RDWRIFREDYNISIKGGRLPNPLRNWEES----GFPLELLS--VIKKP-GYKEPTPIQRQAIPLGL-QNRDPIGVAETGS 293 (673)
T ss_pred ccceeeecceeeeecCCCCCccccChhhc----CCCHHHHH--HHHhc-CCCCCchHHHhhccchh-ccCCeeeEEeccC
Confidence 35666666777888888888665444331 23333331 22222 99999999999999887 7899999999999
Q ss_pred CchHHHHHHHHHHhccC----------CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCC
Q 043190 716 GKTISAELAMLHLFNTQ----------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLS 782 (1492)
Q Consensus 716 GKT~~~~l~il~~l~~~----------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~ 782 (1492)
|||.+|++|++..+... .++.+++++|||+||.|+.++-.+ |.+.+|.++..+.|+...+.+ ...+
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhhhhhcc
Confidence 99999999999866432 478999999999999999988766 777779999999998776554 3458
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHHHHHHhhhc------------------cC
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQ------------------TE 843 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~~l~~~~~~------------------~~ 843 (1492)
|+|+|+||++|++.+.+. ...++++.++|+|||+.+. .++.+.+..++..|...... ..
T Consensus 373 ceiviatPgrLid~Lenr--~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLENR--YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred ceeeecCchHHHHHHHHH--HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 999999999998777763 3448899999999999764 47888999888877532211 01
Q ss_pred CceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcE-EEEeccCCccccccccccChhHHHHHhhcCCCCCee
Q 043190 844 RAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLE-VHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVL 921 (1492)
Q Consensus 844 ~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 921 (1492)
.-.+.+.+|||++. .+.++.-.-..+ .+.......++.+.. ..+..... ....+.+.. +.......++|
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~p-v~vtig~~gk~~~rveQ~v~m~~e-------d~k~kkL~e-il~~~~~ppiI 521 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRP-VVVTIGSAGKPTPRVEQKVEMVSE-------DEKRKKLIE-ILESNFDPPII 521 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCC-eEEEeccCCCCccchheEEEEecc-------hHHHHHHHH-HHHhCCCCCEE
Confidence 12789999999987 455554332222 223333444444432 22111111 111122333 33334678999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNK 1001 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 1001 (1492)
||+|+++.|+.+|..|. ..++.+..+||+-++++|+.+++.|++|.
T Consensus 522 IFvN~kk~~d~lAk~Le----------------------------------K~g~~~~tlHg~k~qeQRe~aL~~fr~~t 567 (673)
T KOG0333|consen 522 IFVNTKKGADALAKILE----------------------------------KAGYKVTTLHGGKSQEQRENALADFREGT 567 (673)
T ss_pred EEEechhhHHHHHHHHh----------------------------------hccceEEEeeCCccHHHHHHHHHHHHhcC
Confidence 99999999999998873 34788999999999999999999999999
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHH
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~ 1077 (1492)
.+|||||+++++|||+|+|.+||+ || +.-++.+|.||+||+||+| +.|+++.|++..+...|..
T Consensus 568 ~dIlVaTDvAgRGIDIpnVSlVin----yd------maksieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 568 GDILVATDVAGRGIDIPNVSLVIN----YD------MAKSIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred CCEEEEecccccCCCCCccceeee----cc------hhhhHHHHHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 999999999999999999999998 33 2224889999999999999 9999999999988665443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=404.54 Aligned_cols=326 Identities=18% Similarity=0.259 Sum_probs=246.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+|+|.++++.++ .++|++++||||||||++|.+|+++.+.... ..+++|++||++||.|+++.++.......+
T Consensus 23 g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 23 GYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 89999999999999998 7899999999999999999999999886432 458999999999999999998875443447
Q ss_pred CEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~ 839 (1492)
.++..++|+...+.+ ...+++|+|+||++|..++++. ...+++++++|+||||++.+ .+...++.++..
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~----- 174 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ----- 174 (460)
T ss_pred cEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh-----
Confidence 889899998765322 2347899999999998888763 34488999999999997754 444455544443
Q ss_pred hccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCC
Q 043190 840 SQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTK 918 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 918 (1492)
.+...|++++|||+++ ...++..+...+..+ ..........+...+...+. .........+......+
T Consensus 175 --~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i-~~~~~~~~~~i~~~~~~~~~--------~~k~~~l~~ll~~~~~~ 243 (460)
T PRK11776 175 --APARRQTLLFSATYPEGIAAISQRFQRDPVEV-KVESTHDLPAIEQRFYEVSP--------DERLPALQRLLLHHQPE 243 (460)
T ss_pred --CCcccEEEEEEecCcHHHHHHHHHhcCCCEEE-EECcCCCCCCeeEEEEEeCc--------HHHHHHHHHHHHhcCCC
Confidence 3457899999999976 344454443322222 22222222222222221111 01112233333445567
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA 998 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 998 (1492)
++||||++++.++.++..|.+. +..+..+||+|++.+|..+++.|+
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~----------------------------------~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQ----------------------------------GFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhC----------------------------------CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 8999999999999999888432 567899999999999999999999
Q ss_pred cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHH
Q 043190 999 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075 (1492)
Q Consensus 999 ~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~ 1075 (1492)
+|+++|||||+++++|+|+|++++||+ |+ .+.+..+|+||+||+||.| ..|.|+.++.+.+...+
T Consensus 290 ~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d------~p~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 290 NRSCSVLVATDVAARGLDIKALEAVIN----YE------LARDPEVHVHRIGRTGRAG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred cCCCcEEEEecccccccchhcCCeEEE----ec------CCCCHhHhhhhcccccCCC--CcceEEEEEchhHHHHH
Confidence 999999999999999999999999998 44 2335889999999999988 78999999988765543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=401.37 Aligned_cols=337 Identities=19% Similarity=0.244 Sum_probs=243.7
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--------CCceEEEEcccH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--------SDMKVVYIAPLK 744 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--------~~~~~l~i~P~r 744 (1492)
|+....+.+. ||..|+|+|.++++.++ +|+|++++||||||||++|++|+++.+... .+.+++|++||+
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Ptr 93 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTR 93 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcH
Confidence 4444555543 99999999999999998 789999999999999999999999877532 246899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 745 AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 745 ~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
+||.|+++.+.. +....|+++..+.|+...+.. ...+++|+|+||+++..++++ ....+++++++||||||++.
T Consensus 94 eLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 94 ELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHHh
Confidence 999999998877 444458999888887553321 123679999999999888775 33457899999999999875
Q ss_pred C-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHH-HHhcCCcceeEecCCCcc-ccCcEEEEeccCCcccc
Q 043190 822 A-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLA-DWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 822 ~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~-~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~ 897 (1492)
+ .+...++.++..+. .....+.+++|||++.. ..+. .++..+ ..+...+... ...+..... +.
T Consensus 171 ~~~f~~~i~~i~~~~~-----~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~------~~ 237 (423)
T PRK04837 171 DLGFIKDIRWLFRRMP-----PANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELF------YP 237 (423)
T ss_pred hcccHHHHHHHHHhCC-----CccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEE------eC
Confidence 4 44444444444331 11345678999999763 2222 233221 1121111111 111111110 00
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
.. . ........+.......++||||+++..|+.++..|.. .+..
T Consensus 238 ~~-~-~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------~g~~ 281 (423)
T PRK04837 238 SN-E-EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA----------------------------------DGHR 281 (423)
T ss_pred CH-H-HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh----------------------------------CCCc
Confidence 00 0 0111222233334567899999999999999887732 2567
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+.++||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.|
T Consensus 282 v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~------P~s~~~yiqR~GR~gR~G- 350 (423)
T PRK04837 282 VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDL------PDDCEDYVHRIGRTGRAG- 350 (423)
T ss_pred EEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCC------CCchhheEeccccccCCC-
Confidence 999999999999999999999999999999999999999999999998 553 335889999999999998
Q ss_pred CCceEEEEEecCCcHHHHH
Q 043190 1058 DQHGKAVILVHEPKKSFYK 1076 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~ 1076 (1492)
..|.|+.|+.+.+...+.
T Consensus 351 -~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 351 -ASGHSISLACEEYALNLP 368 (423)
T ss_pred -CCeeEEEEeCHHHHHHHH
Confidence 889999999887654443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=401.81 Aligned_cols=336 Identities=21% Similarity=0.280 Sum_probs=252.7
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCce-EEEEcccHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMK-VVYIAPLKAIVRE 749 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~-~l~i~P~r~La~q 749 (1492)
+....++++. ||..|+|+|.+++|.++ .|+|+++.|+||||||.+|.+|+++.+.. ..... +|+++|||+||.|
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Q 114 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQ 114 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHH
Confidence 3445555555 99999999999999999 77999999999999999999999999873 22223 9999999999999
Q ss_pred HHHHHHHHhhhcc-CCEEEEEcCCCCcchh--ccC-CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 750 RMNDWKDRLVSQL-GKEMVEMTGDYTPDLM--ALL-SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 750 ~~~~~~~~~~~~~-g~~v~~~~g~~~~~~~--~~~-~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
+++.+.. +.... ++++..+.|+.+...+ .+. +++|+|+||+++.+++.+. ...++++.++|+||||.|.+ ++
T Consensus 115 i~~~~~~-~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--~l~l~~v~~lVlDEADrmLd~Gf 191 (513)
T COG0513 115 IAEELRK-LGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--KLDLSGVETLVLDEADRMLDMGF 191 (513)
T ss_pred HHHHHHH-HHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--CcchhhcCEEEeccHhhhhcCCC
Confidence 9999887 66655 6888899998764432 222 5899999999999998874 55689999999999997754 56
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCc---cccCcEEEEeccCCccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSV---RPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~---r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
...++.++..+ +.+.|++++|||++.. ..++.-+-.++. ........ ....+...+.....
T Consensus 192 ~~~i~~I~~~~-------p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~------- 256 (513)
T COG0513 192 IDDIEKILKAL-------PPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVES------- 256 (513)
T ss_pred HHHHHHHHHhC-------CcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCC-------
Confidence 66666666544 4479999999999872 223222222222 11111111 11122222111110
Q ss_pred cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 901 NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 901 ~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
...+......+.......++||||+|+..+..++..|.. .++.+..
T Consensus 257 ~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~----------------------------------~g~~~~~ 302 (513)
T COG0513 257 EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRK----------------------------------RGFKVAA 302 (513)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHH----------------------------------CCCeEEE
Confidence 011223344444445556799999999999998877733 3678999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+||+|++++|..+++.|++|+.+|||||++++||+|+|++.+||+ ||.+ .+..+|+||+||+||+| ..
T Consensus 303 lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p------~~~e~yvHRiGRTgRaG--~~ 370 (513)
T COG0513 303 LHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLP------LDPEDYVHRIGRTGRAG--RK 370 (513)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCC------CCHHHheeccCccccCC--CC
Confidence 999999999999999999999999999999999999999999998 5533 35899999999999998 99
Q ss_pred eEEEEEecCC-cHHHH
Q 043190 1061 GKAVILVHEP-KKSFY 1075 (1492)
Q Consensus 1061 G~~i~l~~~~-~~~~~ 1075 (1492)
|.++.|+.+. +...+
T Consensus 371 G~ai~fv~~~~e~~~l 386 (513)
T COG0513 371 GVAISFVTEEEEVKKL 386 (513)
T ss_pred CeEEEEeCcHHHHHHH
Confidence 9999999875 44443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=405.49 Aligned_cols=336 Identities=18% Similarity=0.256 Sum_probs=246.1
Q ss_pred CchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--------CCceEEEEcccHH
Q 043190 676 GNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--------SDMKVVYIAPLKA 745 (1492)
Q Consensus 676 ~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--------~~~~~l~i~P~r~ 745 (1492)
...+.+.+. ||..|+|+|.++|+.++ .++|++++||||||||++|++|+++.+... ...++||++||++
T Consensus 17 ~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTre 95 (572)
T PRK04537 17 HPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRE 95 (572)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHH
Confidence 334444443 99999999999999998 789999999999999999999999977432 1468999999999
Q ss_pred HHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC
Q 043190 746 IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 746 La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
||.|+++.+.. +....++++..++|+...+.. ...+++|+|+||++|..++++.. ...++.+++|||||||++.+
T Consensus 96 La~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~lld 173 (572)
T PRK04537 96 LAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMFD 173 (572)
T ss_pred HHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHhh
Confidence 99999999877 445558999999998765432 22367999999999988776532 23477899999999998754
Q ss_pred -CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HH-HHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccc
Q 043190 823 -ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GD-LADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPR 899 (1492)
Q Consensus 823 -~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~-~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 899 (1492)
.+...++.++.++.. ....|++++|||+++. .. ...++... ..+...........+...+.. ..
T Consensus 174 ~gf~~~i~~il~~lp~-----~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~-------~~ 240 (572)
T PRK04537 174 LGFIKDIRFLLRRMPE-----RGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYF-------PA 240 (572)
T ss_pred cchHHHHHHHHHhccc-----ccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEe-------cC
Confidence 455555555544421 1257899999999762 22 23333222 112111111111111111110 00
Q ss_pred ccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
...+...+..+.....+.++||||+|+..|+.++..|.+ .++.+.
T Consensus 241 -~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~----------------------------------~g~~v~ 285 (572)
T PRK04537 241 -DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER----------------------------------HGYRVG 285 (572)
T ss_pred -HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHH----------------------------------cCCCEE
Confidence 011112223333445678999999999999999987743 256799
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ 1059 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~ 1059 (1492)
.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+ .+.+..+|+||+||+||.| .
T Consensus 286 ~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd------~P~s~~~yvqRiGRaGR~G--~ 353 (572)
T PRK04537 286 VLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YD------LPFDAEDYVHRIGRTARLG--E 353 (572)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cC------CCCCHHHHhhhhcccccCC--C
Confidence 9999999999999999999999999999999999999999999998 54 3446899999999999988 7
Q ss_pred ceEEEEEecCCcHHH
Q 043190 1060 HGKAVILVHEPKKSF 1074 (1492)
Q Consensus 1060 ~G~~i~l~~~~~~~~ 1074 (1492)
.|.|++|+.+.+...
T Consensus 354 ~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 354 EGDAISFACERYAMS 368 (572)
T ss_pred CceEEEEecHHHHHH
Confidence 899999998765443
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=349.55 Aligned_cols=344 Identities=17% Similarity=0.252 Sum_probs=257.1
Q ss_pred cccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC-ceEEEEcccHHHHHH
Q 043190 673 TALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD-MKVVYIAPLKAIVRE 749 (1492)
Q Consensus 673 ~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~-~~~l~i~P~r~La~q 749 (1492)
-.|..|..+.+- |+..|+|+|..|+|.++ .|+|+|.+|.||||||.+|.+|+++.+..++. .-+++++|||+||.|
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~Q 90 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQ 90 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHH
Confidence 344455555554 99999999999999999 89999999999999999999999999988754 568999999999999
Q ss_pred HHHHHHHHhhhccCCEEEEEcCCCCc---chhccCCCcEEEECchhhhHhhhcccC--ccccCcccEEEEecccccCC-C
Q 043190 750 RMNDWKDRLVSQLGKEMVEMTGDYTP---DLMALLSADIIISTPEKWDGISRNWHS--RNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 750 ~~~~~~~~~~~~~g~~v~~~~g~~~~---~~~~~~~~~Iiv~Tpe~l~~l~~~~~~--~~~l~~i~liViDEaH~l~~-~ 823 (1492)
+.+.|.. +++.+++++..+.|+.+. +.....++|++|+|||++..+++.... ...+++++++|+|||+.+.+ .
T Consensus 91 iaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~ 169 (442)
T KOG0340|consen 91 IAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC 169 (442)
T ss_pred HHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc
Confidence 9999986 777779999999997653 333445889999999999888876432 34578999999999997754 4
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcce--eEecCCCccccCcEEEEeccCCcccccccc
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIG--LFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~--~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 901 (1492)
+...++.+.+- .+.+.|.+++|||+.+ .+...+++.... .+.+. ....++.... ....+......
T Consensus 170 f~d~L~~i~e~-------lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e-~~~~vstvet---L~q~yI~~~~~ 236 (442)
T KOG0340|consen 170 FPDILEGIEEC-------LPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELE-VIDGVSTVET---LYQGYILVSID 236 (442)
T ss_pred hhhHHhhhhcc-------CCCccceEEEEeehhh--HHHHhhcCCcccccceEEe-ccCCCCchhh---hhhheeecchh
Confidence 55555555443 3556799999999965 344444443221 11111 0011110000 00011111111
Q ss_pred ccChhHHHHHhhcC--CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 902 SMNKPAYAAICTHS--PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 902 ~~~~~~~~~l~~~~--~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
..+..++..+.... +.+.++||+++..+|+.++..| +.+...+.
T Consensus 237 vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l----------------------------------~~le~r~~ 282 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL----------------------------------KNLEVRVV 282 (442)
T ss_pred hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH----------------------------------hhhceeee
Confidence 11223344444443 4789999999999999998777 33478899
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ 1059 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~ 1059 (1492)
.+||.|++.+|...+..|+++.++|||||+++++|+|||.+.+||+ || .+-.+.+|+||+||+.|+| +
T Consensus 283 ~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~d------iPr~P~~yiHRvGRtARAG--R 350 (442)
T KOG0340|consen 283 SLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HD------IPRDPKDYIHRVGRTARAG--R 350 (442)
T ss_pred ehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cC------CCCCHHHHHHhhcchhccc--C
Confidence 9999999999999999999999999999999999999999999998 33 2223889999999999998 8
Q ss_pred ceEEEEEecCCcHHHHHH
Q 043190 1060 HGKAVILVHEPKKSFYKK 1077 (1492)
Q Consensus 1060 ~G~~i~l~~~~~~~~~~~ 1077 (1492)
.|.++.++++.+.+.+..
T Consensus 351 ~G~aiSivt~rDv~l~~a 368 (442)
T KOG0340|consen 351 KGMAISIVTQRDVELLQA 368 (442)
T ss_pred CcceEEEechhhHHHHHH
Confidence 999999999877665543
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=358.09 Aligned_cols=344 Identities=20% Similarity=0.283 Sum_probs=256.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----CC--ceEEEEcccHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SD--MKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~--~~~l~i~P~r~L 746 (1492)
|..++.+.+- ||..+||+|..++|.++ +++++++.|+||||||++|++|+++.+.+. +. ..++||+|||+|
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 3345554443 99999999999999998 889999999999999999999999988322 22 368999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcchh----ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM----ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~----~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
|.|+.+.....+....++++..+.|+.+.+.. ...+++|+|+|||+|..++++......++++.++|+||||.+.+
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 99999988887777668889999998654332 23478999999999999998855554567999999999998765
Q ss_pred -CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCC-Cc--cccCcEEEEeccCCcccc
Q 043190 823 -ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKP-SV--RPVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 823 -~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~-~~--r~~~l~~~~~~~~~~~~~ 897 (1492)
++...++.|++++ ++..|.=++|||... .+++... |......+.... .. .|-.+... |.
T Consensus 172 mgFe~~~n~ILs~L-------PKQRRTGLFSATq~~~v~dL~ra-GLRNpv~V~V~~k~~~~tPS~L~~~--------Y~ 235 (567)
T KOG0345|consen 172 MGFEASVNTILSFL-------PKQRRTGLFSATQTQEVEDLARA-GLRNPVRVSVKEKSKSATPSSLALE--------YL 235 (567)
T ss_pred ccHHHHHHHHHHhc-------ccccccccccchhhHHHHHHHHh-hccCceeeeecccccccCchhhcce--------ee
Confidence 6777777777766 457778899999765 3344332 222211111111 10 11112111 11
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
......+......+......+++|||.+|...++..+..+.... ....
T Consensus 236 v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l--------------------------------~~~~ 283 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL--------------------------------KKRE 283 (567)
T ss_pred EecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh--------------------------------CCCc
Confidence 11111111222233334567899999999999988887664331 2467
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+..+||.|++..|..+++.|++..-.+|+||++++||+|+|++++||+ ||++. ..+.++||+||+||.|
T Consensus 284 i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~GRTaR~g- 352 (567)
T KOG0345|consen 284 IFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRCGRTARAG- 352 (567)
T ss_pred EEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhcchhhhcc-
Confidence 889999999999999999999988899999999999999999999998 77664 3789999999999998
Q ss_pred CCceEEEEEecCCcHHHHHHhhc
Q 043190 1058 DQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
+.|.+++|..+ ....|..|+.
T Consensus 353 -r~G~Aivfl~p-~E~aYveFl~ 373 (567)
T KOG0345|consen 353 -REGNAIVFLNP-REEAYVEFLR 373 (567)
T ss_pred -CccceEEEecc-cHHHHHHHHH
Confidence 99999999998 4455666664
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=419.39 Aligned_cols=395 Identities=20% Similarity=0.267 Sum_probs=272.0
Q ss_pred EecCCCCCchHHHHHHHHHHhccC-----------CCceEEEEcccHHHHHHHHHHHHHHhh-----------hccCCEE
Q 043190 709 LGAPTGSGKTISAELAMLHLFNTQ-----------SDMKVVYIAPLKAIVRERMNDWKDRLV-----------SQLGKEM 766 (1492)
Q Consensus 709 i~apTGsGKT~~~~l~il~~l~~~-----------~~~~~l~i~P~r~La~q~~~~~~~~~~-----------~~~g~~v 766 (1492)
|+||||||||++|.+|++..+... ++.++|||+|+|+|+.|++++++..+. ...+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 589999999999999999877532 257899999999999999998865221 1247899
Q ss_pred EEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 767 VEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 767 ~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
...+||+..+.+. ...++|+|+|||+|..++.+. ....++++++|||||+|.+.+ +||..++..+.|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 9999999876542 246899999999998887642 345689999999999998864 69999999999998764
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCccccc------------cccccChhHH-
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCP------------RMNSMNKPAY- 908 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~- 908 (1492)
+.+.|+|++|||++|.+++++|++.... .++. .+..++.++.+.+.......... ....+.....
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 4578999999999999999999987533 3433 44555556554332111100000 0011111111
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH---HhccceEeecCCC
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ---TLQFGIGLHHAGL 985 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~v~~~h~~l 985 (1492)
..+......+++|||||||+.|+.++..|.+.......... .............+..... .....+.+|||+|
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSP----SIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccc----cccchhhhhhhccccchhccccccceeeeeccccC
Confidence 12222234678999999999999999999765321100000 0000000000011111111 1123478999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|++++||||+++++|||++++++||+ |+ .+.++++|+||+|||||. .+..+.+++
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~g------sP~sVas~LQRiGRAGR~-~gg~s~gli 380 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VA------TPLSVASGLQRIGRAGHQ-VGGVSKGLF 380 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eC------CCCCHHHHHHHhCCCCCC-CCCccEEEE
Confidence 9999999999999999999999999999999999999998 44 345799999999999996 345667775
Q ss_pred EecCCcHHH------HHHhhcCC-Cc--eeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeec
Q 043190 1066 LVHEPKKSF------YKKFLYEP-FP--VESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRL 1125 (1492)
Q Consensus 1066 l~~~~~~~~------~~~~l~~~-~p--ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl 1125 (1492)
+..+ ..+. .+.++... ++ +..+-.+.|..|+.+.++.+.+ +.++..+.+..+|.|+.+
T Consensus 381 ~p~~-r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf~~L 447 (1490)
T PRK09751 381 FPRT-RRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPWKDL 447 (1490)
T ss_pred EeCc-HHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCcccC
Confidence 5443 2222 22333221 12 2222334688899988886544 478888888888887654
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=394.40 Aligned_cols=328 Identities=19% Similarity=0.229 Sum_probs=248.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
||..|+++|.++++.++ .++|++++||||+|||++|++|+++.+... +..+++|++||++||.|+++.+.. +.
T Consensus 20 g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~-l~ 97 (434)
T PRK11192 20 GYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE-LA 97 (434)
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH-HH
Confidence 99999999999999999 788999999999999999999999887532 246899999999999999998877 44
Q ss_pred hccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRM 835 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l 835 (1492)
...++++..++|+...... ...+++|+|+||+++..++.+. ...++++++|||||||++.+ .++..++.+...
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~--~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~- 174 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE--NFDCRAVETLILDEADRMLDMGFAQDIETIAAE- 174 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh-
Confidence 5558999999998765432 2246799999999998877653 33478899999999998754 455555554433
Q ss_pred HHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCcccc-CcEEEEeccCCccccccccccChhHHHHHh
Q 043190 836 RYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPV-PLEVHIQGYPGKFYCPRMNSMNKPAYAAIC 912 (1492)
Q Consensus 836 ~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 912 (1492)
.+...|++++|||++. ..++..++...+..+. ..+..+.. .+...+... . ........+..+.
T Consensus 175 ------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~i~~~~~~~------~-~~~~k~~~l~~l~ 240 (434)
T PRK11192 175 ------TRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVE-AEPSRRERKKIHQWYYRA------D-DLEHKTALLCHLL 240 (434)
T ss_pred ------CccccEEEEEEeecCHHHHHHHHHHHccCCEEEE-ecCCcccccCceEEEEEe------C-CHHHHHHHHHHHH
Confidence 3346789999999974 5677777755443222 12211111 111111100 0 0011122333344
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
.....+++||||+++..++.++..|.. .+..+..+||+|++.+|..
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRK----------------------------------AGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHh----------------------------------CCCCEEEecCCCCHHHHHH
Confidence 444568999999999999999987743 2567899999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+++.|++|+++|||||+++++|+|+|++++||+ |+ .+.+...|+||+||+||.| ..|.+++++...+.
T Consensus 287 ~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d------~p~s~~~yiqr~GR~gR~g--~~g~ai~l~~~~d~ 354 (434)
T PRK11192 287 AIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FD------MPRSADTYLHRIGRTGRAG--RKGTAISLVEAHDH 354 (434)
T ss_pred HHHHHhCCCCcEEEEccccccCccCCCCCEEEE----EC------CCCCHHHHhhcccccccCC--CCceEEEEecHHHH
Confidence 999999999999999999999999999999998 55 3346899999999999987 78999999987665
Q ss_pred HHHHH
Q 043190 1073 SFYKK 1077 (1492)
Q Consensus 1073 ~~~~~ 1077 (1492)
..+.+
T Consensus 355 ~~~~~ 359 (434)
T PRK11192 355 LLLGK 359 (434)
T ss_pred HHHHH
Confidence 54433
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=396.76 Aligned_cols=325 Identities=19% Similarity=0.283 Sum_probs=238.5
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC--------CceEEEEcccHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS--------DMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~--------~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
+||.+|+++|.++++.++ .|+|+++++|||||||++|++|++..+...+ ..++||++||++||.|+++.+.
T Consensus 105 ~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 399999999999999998 7899999999999999999999999876532 4689999999999999999987
Q ss_pred HHhhhccCCEEEEEcCCCCcch--hc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHH
Q 043190 756 DRLVSQLGKEMVEMTGDYTPDL--MA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEV 830 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~~~~--~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~ 830 (1492)
. +....|.++..++|+.+.+. +. ...++|+|+||++|..+..++ ...++++++|||||+|.+.+ .+...+..
T Consensus 184 ~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~l~~~~~~~~l~~ 260 (475)
T PRK01297 184 A-LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADRMLDMGFIPQVRQ 260 (475)
T ss_pred H-hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHHHHhcccHHHHHH
Confidence 7 44445888988888765332 22 235799999999998877764 34588999999999998753 33333333
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccccccccccChhHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYCPRMNSMNKPAY 908 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1492)
++..+. .....|++++|||+++ ...++..+...+. .+....... ...+...+..... .......
T Consensus 261 i~~~~~-----~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~--------~~k~~~l 326 (475)
T PRK01297 261 IIRQTP-----RKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENVASDTVEQHVYAVAG--------SDKYKLL 326 (475)
T ss_pred HHHhCC-----CCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcCCCCcccEEEEEecc--------hhHHHHH
Confidence 332221 1235689999999865 4444444433322 111111111 1111111111100 0011122
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
..+.......++||||++++.++.++..|.+ .+..+..+||+++.+
T Consensus 327 ~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~~~g~~~~~ 372 (475)
T PRK01297 327 YNLVTQNPWERVMVFANRKDEVRRIEERLVK----------------------------------DGINAAQLSGDVPQH 372 (475)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHH----------------------------------cCCCEEEEECCCCHH
Confidence 2333344567899999999999998877632 246788999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+++|||||+++++|||+|++++||+ |+ .+.+..+|+||+|||||.| ..|.++++..
T Consensus 373 ~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~------~P~s~~~y~Qr~GRaGR~g--~~g~~i~~~~ 440 (475)
T PRK01297 373 KRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FT------LPEDPDDYVHRIGRTGRAG--ASGVSISFAG 440 (475)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eC------CCCCHHHHHHhhCccCCCC--CCceEEEEec
Confidence 9999999999999999999999999999999999998 44 3446899999999999988 7899999998
Q ss_pred CCcH
Q 043190 1069 EPKK 1072 (1492)
Q Consensus 1069 ~~~~ 1072 (1492)
+.+.
T Consensus 441 ~~d~ 444 (475)
T PRK01297 441 EDDA 444 (475)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=399.85 Aligned_cols=339 Identities=18% Similarity=0.236 Sum_probs=247.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|....++++. ||.+|+|+|.++++.++ .++++|++||||||||++|.+|++..+... ..+++||++||++||.|++
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~ 91 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVA 91 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHH
Confidence 3334444443 99999999999999998 789999999999999999999999887543 3568999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+........+.++..++|+...+.. ....++|+|+||+++..++.+ ....++++++||+||||.+.+ .+...
T Consensus 92 ~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~gf~~d 169 (629)
T PRK11634 92 EAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMGFIED 169 (629)
T ss_pred HHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcccHHH
Confidence 998875555457888888887654322 124689999999999777765 234488999999999997643 34344
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
++.++.. .+...|++++|||+|+ ...+...+...+..+...........+...+.. .....+..
T Consensus 170 i~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~--------v~~~~k~~ 234 (629)
T PRK11634 170 VETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT--------VWGMRKNE 234 (629)
T ss_pred HHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE--------echhhHHH
Confidence 4444432 3557899999999987 344444333222222111111111111111110 00001112
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
.+..+.......++||||+|+..+..++..|.. .++.+..+||+|+
T Consensus 235 ~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~----------------------------------~g~~~~~lhgd~~ 280 (629)
T PRK11634 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALER----------------------------------NGYNSAALNGDMN 280 (629)
T ss_pred HHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHh----------------------------------CCCCEEEeeCCCC
Confidence 222333334557899999999999999987733 2567899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+.+|..+++.|++|+++|||||+++++|||+|++.+||+ ||. +.+..+|+||+|||||.| ..|.|+++
T Consensus 281 q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~------P~~~e~yvqRiGRtGRaG--r~G~ai~~ 348 (629)
T PRK11634 281 QALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDI------PMDSESYVHRIGRTGRAG--RAGRALLF 348 (629)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCC------CCCHHHHHHHhccccCCC--CcceEEEE
Confidence 999999999999999999999999999999999999998 553 346899999999999988 88999999
Q ss_pred ecCCcHHHHHH
Q 043190 1067 VHEPKKSFYKK 1077 (1492)
Q Consensus 1067 ~~~~~~~~~~~ 1077 (1492)
+.+.+...+..
T Consensus 349 v~~~e~~~l~~ 359 (629)
T PRK11634 349 VENRERRLLRN 359 (629)
T ss_pred echHHHHHHHH
Confidence 98876555443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=401.05 Aligned_cols=335 Identities=17% Similarity=0.240 Sum_probs=246.4
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
...+..||+..|+|+|.++++.++ .|+|+++++|||+|||+||++|++.. ++.+|||+|+++|+.+++..+..
T Consensus 450 ~~lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSLmqDQV~~L~~- 522 (1195)
T PLN03137 450 VNNKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMNLLQ- 522 (1195)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHh-
Confidence 556778899999999999999998 78999999999999999999999864 57899999999999977766543
Q ss_pred hhhccCCEEEEEcCCCCcchhc---------cCCCcEEEECchhhh---HhhhcccCccccCcccEEEEecccccCCCCc
Q 043190 758 LVSQLGKEMVEMTGDYTPDLMA---------LLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILDEIHLLGAERG 825 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~~---------~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViDEaH~l~~~~g 825 (1492)
.|+.+..+.|+....... ..+.+|+++|||++. .+++..........+++|||||||++.+ +|
T Consensus 523 ----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq-WG 597 (1195)
T PLN03137 523 ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ-WG 597 (1195)
T ss_pred ----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh-cc
Confidence 288888888876543221 146799999999974 2333322111234589999999999853 44
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
..+..-...+..+.... +..+++++|||.+. .+++...++.....++. ....|| .+...+... . ...
T Consensus 598 hDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~k--~------kk~ 666 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVPK--T------KKC 666 (1195)
T ss_pred cchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEecc--c------hhH
Confidence 33333333332222222 35778999999876 46788888776543332 112222 222222110 0 000
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
...+...+.....+.+.||||+|+++|+.++..|.. .++.+.+|||
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~----------------------------------~Gika~~YHA 712 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQE----------------------------------FGHKAAFYHG 712 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHH----------------------------------CCCCeeeeeC
Confidence 112223333334456899999999999999987743 2678999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
+|++++|..+++.|..|+++|||||+++++|||+|++++||+ |+ .+.++.+|+||+|||||.| ..|.|
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----yd------lPkSiEsYyQriGRAGRDG--~~g~c 780 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS------LPKSIEGYHQECGRAGRDG--QRSSC 780 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cC------CCCCHHHHHhhhcccCCCC--CCceE
Confidence 999999999999999999999999999999999999999998 54 2336999999999999998 88999
Q ss_pred EEEecCCcHHHHHHhhcC
Q 043190 1064 VILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~~ 1081 (1492)
++++...+...+..++..
T Consensus 781 ILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 781 VLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred EEEecHHHHHHHHHHHhc
Confidence 999988887777777754
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=393.22 Aligned_cols=333 Identities=21% Similarity=0.307 Sum_probs=248.7
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
++..|||+.|+|+|.++++.++ .++++++++|||||||++|++|++.. ++.++|++|+++|+.|+++.+..
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~-----~~~~lVi~P~~~L~~dq~~~l~~--- 73 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS-----DGITLVISPLISLMEDQVLQLKA--- 73 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc-----CCcEEEEecHHHHHHHHHHHHHH---
Confidence 5678899999999999999998 68899999999999999999998863 67899999999999999888754
Q ss_pred hccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
.|+.+..++|+...+.. .....+|+++|||++....+.........+++++||||||++. ++|..+...+
T Consensus 74 --~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~-~~g~~fr~~~ 150 (470)
T TIGR00614 74 --SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS-QWGHDFRPDY 150 (470)
T ss_pred --cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC-ccccccHHHH
Confidence 27888888887654311 1235799999999874322110011135789999999999985 3454444444
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHH
Q 043190 833 SRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA 910 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1492)
.++..+.... ++.+++++|||+++. .++.++++.....++..... ++ .+...+..... .....+...
T Consensus 151 ~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-r~-nl~~~v~~~~~--------~~~~~l~~~ 219 (470)
T TIGR00614 151 KALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-RP-NLYYEVRRKTP--------KILEDLLRF 219 (470)
T ss_pred HHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-CC-CcEEEEEeCCc--------cHHHHHHHH
Confidence 4443333322 467899999999773 67888888766544432221 21 12211111000 011122333
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+....+++.+||||+|++.|+.++..|.. .+..+..+||+|++++|
T Consensus 220 l~~~~~~~~~IIF~~s~~~~e~la~~L~~----------------------------------~g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 220 IRKEFKGKSGIIYCPSRKKSEQVTASLQN----------------------------------LGIAAGAYHAGLEISAR 265 (470)
T ss_pred HHHhcCCCceEEEECcHHHHHHHHHHHHh----------------------------------cCCCeeEeeCCCCHHHH
Confidence 33344566779999999999999988743 25678999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++++...
T Consensus 266 ~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~------P~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~ 333 (470)
T TIGR00614 266 DDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSL------PKSMESYYQESGRAGRDG--LPSECHLFYAPA 333 (470)
T ss_pred HHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCC------CCCHHHHHhhhcCcCCCC--CCceEEEEechh
Confidence 99999999999999999999999999999999998 543 336899999999999988 889999999998
Q ss_pred cHHHHHHhhcC
Q 043190 1071 KKSFYKKFLYE 1081 (1492)
Q Consensus 1071 ~~~~~~~~l~~ 1081 (1492)
+...+..++.+
T Consensus 334 d~~~~~~~~~~ 344 (470)
T TIGR00614 334 DINRLRRLLME 344 (470)
T ss_pred HHHHHHHHHhc
Confidence 88877777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=333.05 Aligned_cols=344 Identities=15% Similarity=0.242 Sum_probs=257.4
Q ss_pred ccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHH
Q 043190 670 LPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAI 746 (1492)
Q Consensus 670 ~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~L 746 (1492)
+..-.|+++.++.+| ||+.|..+|+.|++.++ .|+|++..|..|+|||..|-+.+++.+.-+ +..++++++|||+|
T Consensus 29 F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 29 FDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTREL 107 (400)
T ss_pred hhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHH
Confidence 344457778888887 99999999999999999 899999999999999999998888876543 34789999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcc--hhcc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPD--LMAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~--~~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~- 822 (1492)
|.|+-+.+.. ++..+|+++..+.|+.+.. .+.. .+.+++.+|||+...++++.. ...+.++++|+|||+.+.+
T Consensus 108 a~Qi~~vi~a-lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~--L~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 108 AVQIQKVILA-LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS--LRTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHH-hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc--ccccceeEEEeccHHHHHHh
Confidence 9998887766 7777799999988876532 2222 367999999999988888743 3367899999999997654
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 901 (1492)
.++.++-.+ ++ ..+++.|++++|||+|. ..+..+++-.++..++.-..+..-..+... +.....
T Consensus 185 gfk~Qiydi---yr----~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf--------~v~ve~ 249 (400)
T KOG0328|consen 185 GFKEQIYDI---YR----YLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF--------FVAVEK 249 (400)
T ss_pred hHHHHHHHH---HH----hCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh--------eeeech
Confidence 444443333 33 24679999999999986 445555555555444332111110001111 111111
Q ss_pred cc-ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 902 SM-NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 902 ~~-~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
.. +...+..+-....-.+.+|||||++.+..+.+.+.+. .+.|..
T Consensus 250 EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~----------------------------------nftVss 295 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----------------------------------NFTVSS 295 (400)
T ss_pred hhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh----------------------------------Cceeee
Confidence 11 1122222222233468999999999999988887543 577899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
.||+|++++|..+.+.|++|+.+||++|++-++|+|+|.+.+||+ ||-+ .....|+||+||+||-| +.
T Consensus 296 mHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP------~nre~YIHRIGRSGRFG--Rk 363 (400)
T KOG0328|consen 296 MHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLP------NNRELYIHRIGRSGRFG--RK 363 (400)
T ss_pred ccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCC------ccHHHHhhhhccccccC--Cc
Confidence 999999999999999999999999999999999999999999998 4422 23789999999999976 99
Q ss_pred eEEEEEecCCcHHHHHHh
Q 043190 1061 GKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~~ 1078 (1492)
|.++-|+..++...+..+
T Consensus 364 GvainFVk~~d~~~lrdi 381 (400)
T KOG0328|consen 364 GVAINFVKSDDLRILRDI 381 (400)
T ss_pred ceEEEEecHHHHHHHHHH
Confidence 999999998886655443
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=387.59 Aligned_cols=340 Identities=17% Similarity=0.241 Sum_probs=243.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+....+++++ ||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+... .+.++||++|+++|+.|+.
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~ 113 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQ 113 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHH
Confidence 4445555554 89999999999999998 788999999999999999999999987642 3578999999999999998
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+.. +....+..+..+.|+..... ....+++|+|+||+++..++++. ...+++++++||||+|++.+ .++..
T Consensus 114 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~i~lvViDEah~~~~~~~~~~ 190 (401)
T PTZ00424 114 KVVLA-LGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR--HLRVDDLKLFILDEADEMLSRGFKGQ 190 (401)
T ss_pred HHHHH-HhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC--CcccccccEEEEecHHHHHhcchHHH
Confidence 88776 44444777777777754322 12235799999999987777652 34588999999999998754 23222
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
+..++ ...+...|++++|||+++. .++...+...+..+...........+......... ......
T Consensus 191 ~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 256 (401)
T PTZ00424 191 IYDVF-------KKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK-------EEWKFD 256 (401)
T ss_pred HHHHH-------hhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh-------HHHHHH
Confidence 22222 2345678999999999872 22222222222111111111111111111111000 000111
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
....+.......++||||++++.++.++..|.+ .+.++..+||+++
T Consensus 257 ~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~----------------------------------~~~~~~~~h~~~~ 302 (401)
T PTZ00424 257 TLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE----------------------------------RDFTVSCMHGDMD 302 (401)
T ss_pred HHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH----------------------------------CCCcEEEEeCCCC
Confidence 122233334557899999999999988876632 2467899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+++|..+++.|++|+++|||||+++++|+|+|++++||+ |+ .+.+..+|+||+|||||.| ..|.|+.+
T Consensus 303 ~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~------~p~s~~~y~qr~GRagR~g--~~G~~i~l 370 (401)
T PTZ00424 303 QKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YD------LPASPENYIHRIGRSGRFG--RKGVAINF 370 (401)
T ss_pred HHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----EC------CCCCHHHEeecccccccCC--CCceEEEE
Confidence 999999999999999999999999999999999999997 54 2346899999999999987 78999999
Q ss_pred ecCCcHHHHHHh
Q 043190 1067 VHEPKKSFYKKF 1078 (1492)
Q Consensus 1067 ~~~~~~~~~~~~ 1078 (1492)
+++.+...+.++
T Consensus 371 ~~~~~~~~~~~~ 382 (401)
T PTZ00424 371 VTPDDIEQLKEI 382 (401)
T ss_pred EcHHHHHHHHHH
Confidence 988877665544
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=341.14 Aligned_cols=333 Identities=20% Similarity=0.300 Sum_probs=258.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|..+.+..+| ||+.|.|+|.+++|.++ +|+|++.-|..|+|||-+|.+|+++.+... ..-++++++|+|+||.|+.
T Consensus 92 Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtS 170 (459)
T KOG0326|consen 92 LKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTS 170 (459)
T ss_pred hhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHH
Confidence 4556667777 99999999999999999 899999999999999999999999988653 2458899999999999988
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+++ +++.+|++|...+|+++..+. .....+++|+|||++.++..+. ...+++...+|+||||.+.+ ++++.
T Consensus 171 qvc~~-lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg--Va~ls~c~~lV~DEADKlLs~~F~~~ 247 (459)
T KOG0326|consen 171 QVCKE-LSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG--VADLSDCVILVMDEADKLLSVDFQPI 247 (459)
T ss_pred HHHHH-HhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc--cccchhceEEEechhhhhhchhhhhH
Confidence 87765 778789999999998775433 2346799999999999999874 44589999999999997654 88888
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HH-HHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA-GD-LADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~-~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
++.++..+ ++..|+++.|||.|.. .. +.+++..+ ..++.-.+..+..+... |.-....-+-
T Consensus 248 ~e~li~~l-------P~~rQillySATFP~tVk~Fm~~~l~kP--y~INLM~eLtl~GvtQy--------YafV~e~qKv 310 (459)
T KOG0326|consen 248 VEKLISFL-------PKERQILLYSATFPLTVKGFMDRHLKKP--YEINLMEELTLKGVTQY--------YAFVEERQKV 310 (459)
T ss_pred HHHHHHhC-------CccceeeEEecccchhHHHHHHHhccCc--ceeehhhhhhhcchhhh--------eeeechhhhh
Confidence 88888765 5688999999999872 22 23333221 11221111111111111 1100111111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.++..+.....-.+.+|||||.+.++.+|..+.+ +++.+.+.|+.|
T Consensus 311 hCLntLfskLqINQsIIFCNS~~rVELLAkKITe----------------------------------lGyscyyiHakM 356 (459)
T KOG0326|consen 311 HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE----------------------------------LGYSCYYIHAKM 356 (459)
T ss_pred hhHHHHHHHhcccceEEEeccchHhHHHHHHHHh----------------------------------ccchhhHHHHHH
Confidence 2333343444456899999999999999988744 378889999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
.+++|+.|+..|++|..+.||||+.+.||||++++++||+ +|+| .++|+||+||+||-| ..|.|
T Consensus 357 ~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN------------FDfpk~aEtYLHRIGRsGRFG--hlGlA 422 (459)
T KOG0326|consen 357 AQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN------------FDFPKNAETYLHRIGRSGRFG--HLGLA 422 (459)
T ss_pred HHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe------------cCCCCCHHHHHHHccCCccCC--CcceE
Confidence 9999999999999999999999999999999999999998 4555 889999999999976 99999
Q ss_pred EEEecCCcHHHHH
Q 043190 1064 VILVHEPKKSFYK 1076 (1492)
Q Consensus 1064 i~l~~~~~~~~~~ 1076 (1492)
+.+++-++...+.
T Consensus 423 InLityedrf~L~ 435 (459)
T KOG0326|consen 423 INLITYEDRFNLY 435 (459)
T ss_pred EEEEehhhhhhHH
Confidence 9999877655433
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=355.48 Aligned_cols=342 Identities=19% Similarity=0.230 Sum_probs=258.8
Q ss_pred hhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHH
Q 043190 678 NIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 678 ~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~ 750 (1492)
..+.++. ||..++++|..+++.++ .|+++++.|-||||||++|++|+++.+... ++-.+++++|||+||.|+
T Consensus 92 ~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~ 170 (543)
T KOG0342|consen 92 LTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQI 170 (543)
T ss_pred HHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHH
Confidence 3444554 99999999999999999 788999999999999999999999977543 456899999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcc---hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPD---LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.+..+....+..+..+.|+.... .+....++|+|+|||+|.+.+.+... ...++++++|+||||++.+ .+..
T Consensus 171 ~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~GF~~ 249 (543)
T KOG0342|consen 171 FAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIGFEE 249 (543)
T ss_pred HHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcccHH
Confidence 99998866555478888888876543 22334889999999999998887544 4567789999999998765 5666
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
.++.|+..+ +...|..++|||.+. .++++.-.-..+...++......+...+ +..+.+........-.
T Consensus 250 di~~Ii~~l-------pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The----~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 250 DVEQIIKIL-------PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHE----RLEQGYVVAPSDSRFS 318 (543)
T ss_pred HHHHHHHhc-------cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhh----cccceEEeccccchHH
Confidence 677766654 468899999999976 5666653322222222222222211111 1111111111111112
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.++..+.++....++||||+|...+...+..|. .+...|.-+||+.
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~----------------------------------~~dlpv~eiHgk~ 364 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLN----------------------------------YIDLPVLEIHGKQ 364 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHh----------------------------------hcCCchhhhhcCC
Confidence 345556666666899999999999988887663 2356778889999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++..|..+...|++.+.-|||||+++|||+|+|++++||+ |+++. ...+|+||+||+||.| ..|.+++
T Consensus 365 ~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRvGRTaR~g--k~G~alL 432 (543)
T KOG0342|consen 365 KQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRVGRTAREG--KEGKALL 432 (543)
T ss_pred cccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHhccccccC--CCceEEE
Confidence 9999999999999999999999999999999999999998 66654 3899999999999977 8999999
Q ss_pred EecCCcHHHHHHh
Q 043190 1066 LVHEPKKSFYKKF 1078 (1492)
Q Consensus 1066 l~~~~~~~~~~~~ 1078 (1492)
+..+.+..++..+
T Consensus 433 ~l~p~El~Flr~L 445 (543)
T KOG0342|consen 433 LLAPWELGFLRYL 445 (543)
T ss_pred EeChhHHHHHHHH
Confidence 9988887665443
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=375.64 Aligned_cols=385 Identities=28% Similarity=0.437 Sum_probs=296.4
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+|+ +.++|++|+..+. .|..++|+|+|.+|||++|+.+|.-.-. .+.+++|.+|.++|.+|.+++|+..|+.
T Consensus 294 ~pFe-lD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~--h~TR~iYTSPIKALSNQKfRDFk~tF~D--- 366 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQK--HMTRTIYTSPIKALSNQKFRDFKETFGD--- 366 (1248)
T ss_pred CCCC-ccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHh--hccceEecchhhhhccchHHHHHHhccc---
Confidence 3665 8899999999986 8999999999999999999998876544 3789999999999999999999998864
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
++.+|||.... ..+.++|+|.|.|.+++.+ +...++++.+||+||+|.+++ +||.+||.++-- +
T Consensus 367 --vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViIM-------l 431 (1248)
T KOG0947|consen 367 --VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM-------L 431 (1248)
T ss_pred --cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeeee-------c
Confidence 44899997654 5789999999999888887 444588999999999999986 899999977643 4
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCcc--------------------------
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKF-------------------------- 895 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~-------------------------- 895 (1492)
+..+++|++|||+||..++++|+|-.+. .++..+...||+|++..+..-....
T Consensus 432 P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 6789999999999999999999997644 5667777899999987652110000
Q ss_pred ccc------cc----------------------ccc-Ch--hHHHHHhhc---CCCCCeeEEecChHHHHHHHHHHHHHH
Q 043190 896 YCP------RM----------------------NSM-NK--PAYAAICTH---SPTKPVLIFVSSRRQTRLTALDLIQFA 941 (1492)
Q Consensus 896 ~~~------~~----------------------~~~-~~--~~~~~l~~~---~~~~~~LIF~~s~~~~~~~a~~L~~~~ 941 (1492)
+.. +. ... .. +.+..+..+ ..--|++|||-|++.|+..|+.|...-
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 000 00 000 00 112222221 233489999999999999999886542
Q ss_pred hcCCCCcccCCCChHHHHHHHhhcCc--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 942 ASDETPRQFLGMPEEDLQMVLSQVTD--------QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
-.+...+.-.. --+++....+++ ..+.+.+..|+++||||+-+--++.|+-.|..|-++||+||-++++
T Consensus 592 L~~~~EKseV~---lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAM 668 (1248)
T KOG0947|consen 592 LTDSKEKSEVH---LFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAM 668 (1248)
T ss_pred cccchhHHHHH---HHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhh
Confidence 22111110000 012222333322 2456778899999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC--cHHHHHHhh-cCCCceeeccc
Q 043190 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP--KKSFYKKFL-YEPFPVESSLR 1090 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~--~~~~~~~~l-~~~~pies~l~ 1090 (1492)
|||.|+.++|+.+.+..|+... .++.+-+|.||+|||||.|.|..|++++++... +...+.+++ ..+.+++|++.
T Consensus 669 GVNMPARtvVF~Sl~KhDG~ef--R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFR 746 (1248)
T KOG0947|consen 669 GVNMPARTVVFSSLRKHDGNEF--RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFR 746 (1248)
T ss_pred hcCCCceeEEeeehhhccCcce--eecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhh
Confidence 9999999999999888888765 567899999999999999999999999999864 556677766 66788999887
Q ss_pred ccchh
Q 043190 1091 DQLHD 1095 (1492)
Q Consensus 1091 ~~l~~ 1095 (1492)
-...-
T Consensus 747 lTY~M 751 (1248)
T KOG0947|consen 747 LTYGM 751 (1248)
T ss_pred hHHHH
Confidence 65433
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.46 Aligned_cols=373 Identities=18% Similarity=0.219 Sum_probs=255.8
Q ss_pred hhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHHHH
Q 043190 681 EALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 681 ~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~~~ 753 (1492)
+...++..||.+|.++||.++ +|++++|.|+||||||++|++|+++.+... .|.-+|+|+|||+||.|+|+.
T Consensus 152 ~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 152 NTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred HHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 344589999999999999999 699999999999999999999999987643 477899999999999999999
Q ss_pred HHHHhhhccCCEEEEEcC-CCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHH
Q 043190 754 WKDRLVSQLGKEMVEMTG-DYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILE 829 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g-~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~ 829 (1492)
+.+.+..+.-+-.+.+.| ..... .+..++.+|+|+|||++.+.+.+... ..+++++++|+||+|.+.+ +++..+.
T Consensus 231 ~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 231 VQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch-heeeeeeEEEecchhHHHhccchhhHH
Confidence 988776653232333444 33322 34456889999999999888876433 3477899999999998755 6788888
Q ss_pred HHHHHHHHhhhc------cCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccc-------------cCcEE--E
Q 043190 830 VIVSRMRYISSQ------TERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRP-------------VPLEV--H 887 (1492)
Q Consensus 830 ~i~~~l~~~~~~------~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~-------------~~l~~--~ 887 (1492)
.|+..+..+... .+...+-+++|||+.+ ..++++. ...+...+..+..... .+... .
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~-sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~ 388 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL-SLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLD 388 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc-cccCceeeeccchhhhcCcchhhhhhcCCcccccccc
Confidence 888877443221 1224677899999976 3444432 1222111111110000 00000 0
Q ss_pred EeccCCcc---ccccccccChhH----HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHH
Q 043190 888 IQGYPGKF---YCPRMNSMNKPA----YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQM 960 (1492)
Q Consensus 888 ~~~~~~~~---~~~~~~~~~~~~----~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 960 (1492)
....++.. |...-..+...+ +.......+..+++||+++.+.++.-+..+.+...........-.. .
T Consensus 389 ~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~-s----- 462 (708)
T KOG0348|consen 389 SFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD-S----- 462 (708)
T ss_pred cccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc-c-----
Confidence 01111110 000000011111 1122233556689999999999998888887765432110000000 0
Q ss_pred HHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccC
Q 043190 961 VLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF 1040 (1492)
Q Consensus 961 ~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~ 1040 (1492)
+..-.-..+..+.-+||+|++++|..+++.|...+..||+||++++||+|+|.+++||. ||++.
T Consensus 463 ------~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~P~------ 526 (708)
T KOG0348|consen 463 ------EGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDPPF------ 526 (708)
T ss_pred ------CCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eCCCC------
Confidence 00011123556888999999999999999999998899999999999999999999998 77653
Q ss_pred CHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1041 PITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1041 ~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
+.++|+||+||+.|.| ..|.+++|..+.+.+ |.+++..
T Consensus 527 s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 527 STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 6899999999999999 899999999998887 6666654
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=392.81 Aligned_cols=418 Identities=18% Similarity=0.185 Sum_probs=284.8
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+..+ .++++++++||||||||+++.+++++... .++++++++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 10 i~~~l-~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~- 85 (819)
T TIGR01970 10 LRDAL-AAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN- 85 (819)
T ss_pred HHHHH-HcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-
Confidence 34444 47889999999999999999999998764 357999999999999999999988777666777776544321
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc--cCCCCccHHHHHHHHHHHhhhccCCceEEEEEcC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL--LGAERGPILEVIVSRMRYISSQTERAVRFIGLST 853 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~--l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSA 853 (1492)
....+++|+|+|||.+...+.+ ...++++++|||||+|. +..+.+ +..++.+......+.|+|+|||
T Consensus 86 --~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~------L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 86 --KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLG------LALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred --ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchH------HHHHHHHHHhcCCCceEEEEeC
Confidence 2234679999999998776664 34689999999999994 222322 1112222223356899999999
Q ss_pred CCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHH
Q 043190 854 ALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 854 Tl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~ 933 (1492)
|++. +.+.++++..+ ++. ...+..+++..+.......... ..+. .....+.. ...+++|||++++++++.+
T Consensus 155 Tl~~-~~l~~~l~~~~--vI~--~~gr~~pVe~~y~~~~~~~~~~--~~v~-~~l~~~l~-~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 155 TLDG-ERLSSLLPDAP--VVE--SEGRSFPVEIRYLPLRGDQRLE--DAVS-RAVEHALA-SETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CCCH-HHHHHHcCCCc--EEE--ecCcceeeeeEEeecchhhhHH--HHHH-HHHHHHHH-hcCCcEEEEECCHHHHHHH
Confidence 9965 45778875322 222 2234444544433221111000 0000 11111111 2367899999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
+..|.+... .++.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 226 ~~~L~~~~~-------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAEr 274 (819)
T TIGR01970 226 QEQLAERLD-------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAET 274 (819)
T ss_pred HHHHHhhcC-------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhh
Confidence 887754210 1467899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCce
Q 043190 1014 GVNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV 1085 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pi 1085 (1492)
|||+|++++||+.. ..||+..+. ...+|.+++.||+|||||. .+|.||.++++.+...+..+ ..|
T Consensus 275 gItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~~l~~~---~~P- 347 (819)
T TIGR01970 275 SLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQRLPAQ---DEP- 347 (819)
T ss_pred cccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHHhhhcC---CCc-
Confidence 99999999999854 356665431 2457899999999999997 59999999987654333222 111
Q ss_pred eecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCcee
Q 043190 1086 ESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM 1165 (1492)
Q Consensus 1086 es~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~ 1165 (1492)
.-+...|...++.....| +.+..+ +.|+ ..| -.+.++.++..|...|+|+.
T Consensus 348 -EI~r~~L~~~~L~l~~~g-~~~~~~-~~~l----------~~P----------------~~~~i~~a~~~L~~lgald~ 398 (819)
T TIGR01970 348 -EILQADLSGLALELAQWG-AKDPSD-LRWL----------DAP----------------PSVALAAARQLLQRLGALDA 398 (819)
T ss_pred -ceeccCcHHHHHHHHHcC-CCChhh-CCCC----------CCc----------------CHHHHHHHHHHHHHCCCCCC
Confidence 222333444444433333 222211 1111 111 12457889999999999965
Q ss_pred cCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHH
Q 043190 1166 TEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHI 1208 (1492)
Q Consensus 1166 ~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~i 1208 (1492)
++ .+|++|+.|+.++++|..+++++.+....+ ....+.+
T Consensus 399 ~~---~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~-~~~~~~i 437 (819)
T TIGR01970 399 QG---RLTAHGKAMAALGCHPRLAAMLLSAHSTGL-AALACDL 437 (819)
T ss_pred CC---CcCHHHHHHHhcCCCHHHHHHHHHhhhcCC-HHHHHHH
Confidence 44 469999999999999999999997655443 3334333
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.97 Aligned_cols=338 Identities=18% Similarity=0.257 Sum_probs=259.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+|..++.+|+++|+.++ .|++++.+|.||||||++|+.|+++.+... .|--+|||+|||+||.|+++.+.+ .+
T Consensus 88 ~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vg 165 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VG 165 (758)
T ss_pred CCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-Hh
Confidence 88899999999999999 899999999999999999999999987542 467899999999999999999887 67
Q ss_pred hccCCEEEEEcCCCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMR 836 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~~l~ 836 (1492)
+..+.+++.+.|+.... .......+|+|||||+|...+.... ....+++.++|+|||+.+. .++..+++.|++.+
T Consensus 166 k~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l- 243 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL- 243 (758)
T ss_pred hccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC-
Confidence 76688999998876643 3445688999999999887776532 2345788999999999764 46777888887754
Q ss_pred HhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecC---CCccccCcEEEEeccCCccccccccccChhHHHHHh
Q 043190 837 YISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFK---PSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC 912 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~---~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 912 (1492)
+...|.+++|||... ..++++.-- .++..+... ....|..+...+.-. ........++..|.
T Consensus 244 ------P~~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~v-------~l~~Ki~~L~sFI~ 309 (758)
T KOG0343|consen 244 ------PKKRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVIV-------PLEDKIDMLWSFIK 309 (758)
T ss_pred ------ChhheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEEE-------ehhhHHHHHHHHHH
Confidence 567899999999866 567766422 222222111 112222222222111 11111122344444
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
. ....++|||++|.+++..++..+++.. .+..+..+||+|++..|..
T Consensus 310 s-hlk~K~iVF~SscKqvkf~~e~F~rlr--------------------------------pg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 310 S-HLKKKSIVFLSSCKQVKFLYEAFCRLR--------------------------------PGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred h-ccccceEEEEehhhHHHHHHHHHHhcC--------------------------------CCCceeeeccchhHHHHHH
Confidence 4 456789999999999999998886643 2567889999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
++..|-...--||+||++++||+|+|++++||. +|+| +.+|+||+||+.|.+ ..|.++++..++
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ------------~DCPedv~tYIHRvGRtAR~~--~~G~sll~L~ps 422 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ------------VDCPEDVDTYIHRVGRTARYK--ERGESLLMLTPS 422 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEE------------ecCchhHHHHHHHhhhhhccc--CCCceEEEEcch
Confidence 999999988899999999999999999999998 5555 899999999999965 899999999999
Q ss_pred cHHHHHHhh-cCCCceee
Q 043190 1071 KKSFYKKFL-YEPFPVES 1087 (1492)
Q Consensus 1071 ~~~~~~~~l-~~~~pies 1087 (1492)
+.+.+...+ ....|++.
T Consensus 423 EeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 423 EEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred hHHHHHHHHHHcCCCHHh
Confidence 866555544 44456543
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=392.56 Aligned_cols=412 Identities=17% Similarity=0.180 Sum_probs=285.8
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+.++ .++++++++||||||||+++.+++++.... .+++++++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 13 i~~~l-~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~- 88 (812)
T PRK11664 13 LLTAL-KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES- 88 (812)
T ss_pred HHHHH-HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc-
Confidence 33444 477899999999999999999999986433 46999999999999999999988787767888877665432
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
....+++|+|+|||++..++.+ ...++++++|||||+|.. +...+..+..++.+......+.|+|+||||+
T Consensus 89 --~~~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 89 --KVGPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred --ccCCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 1223568999999998777664 346899999999999953 2222222222233333345688999999999
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
+. +.+.++++... ++. ...+..+++..+...+...+.. ... ......+.. ...+.+|||+|++++++.++.
T Consensus 160 ~~-~~l~~~~~~~~--~I~--~~gr~~pV~~~y~~~~~~~~~~--~~v-~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 160 DN-DRLQQLLPDAP--VIV--SEGRSFPVERRYQPLPAHQRFD--EAV-ARATAELLR-QESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CH-HHHHHhcCCCC--EEE--ecCccccceEEeccCchhhhHH--HHH-HHHHHHHHH-hCCCCEEEEcCCHHHHHHHHH
Confidence 64 56777775322 121 2234445554443222111100 000 001111111 246899999999999999998
Q ss_pred HHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 043190 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015 (1492)
Q Consensus 936 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gv 1015 (1492)
.|.+... .+..+..+||+|+.++|..+++.|++|+.+|||||+++++||
T Consensus 231 ~L~~~~~-------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 231 QLASRVA-------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHHhcc-------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 8854211 135688999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceee
Q 043190 1016 NLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVES 1087 (1492)
Q Consensus 1016 dip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies 1087 (1492)
|+|++++||+.. ..||+..+. -..+|.++|.||+|||||. .+|.||.++++.+. ..+.....| .
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~---~~l~~~~~P--E 351 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA---ERAAAQSEP--E 351 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH---hhCccCCCC--c
Confidence 999999999853 347766542 1356789999999999997 49999999987553 333322222 3
Q ss_pred cccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecC
Q 043190 1088 SLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE 1167 (1492)
Q Consensus 1088 ~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~ 1167 (1492)
-+...|...++.....| +.+..+ +.|+ +.. -.+.+++++..|...|+|+.++
T Consensus 352 I~r~dL~~~~L~l~~~g-~~~~~~-~~~l------------------d~P--------~~~~~~~A~~~L~~lgald~~g 403 (812)
T PRK11664 352 ILHSDLSGLLLELLQWG-CHDPAQ-LSWL------------------DQP--------PAAALAAAKRLLQQLGALDGQG 403 (812)
T ss_pred eeccchHHHHHHHHHcC-CCCHHh-CCCC------------------CCC--------CHHHHHHHHHHHHHCCCCCCCC
Confidence 34445555555544444 222221 1111 111 1245789999999999996443
Q ss_pred CccccccchhhhhhccccHHHHHHHHhccCCC
Q 043190 1168 DTVEPTMLGTIASQYYLSYVTVSMFGSNIGPD 1199 (1492)
Q Consensus 1168 ~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~ 1199 (1492)
.+|++|+.|+.++++|..+++++.+....
T Consensus 404 ---~lT~~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 404 ---RLTARGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred ---CcCHHHHHHHhcCCchHHHHHHHHHHhcC
Confidence 56999999999999999999998765433
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=377.27 Aligned_cols=501 Identities=20% Similarity=0.246 Sum_probs=339.2
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHH---------------HH
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEIC---------------YK 72 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 72 (1492)
+|+||||||+||..+++.||.+. ++.+.+|||||..+.......-...+...+.++. ..
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~ 451 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVG 451 (1008)
T ss_pred eeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceee
Confidence 89999999999999999999876 5788999999987653221100000222222221 11
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCC-CCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNN-DTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
...+.+.++.++||||++|+.|+.+|..+....+.......+.. .+..+............+..|+..+.+|++|||+|
T Consensus 452 L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaG 531 (1008)
T KOG0950|consen 452 LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAG 531 (1008)
T ss_pred ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccc
Confidence 23445567889999999999999999888776654221111111 01111111111222334677999999999999999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
|+.++|+.||..||+|.+.|++||||||+|||+||++|||+...+.- ...+...|.||+|||||+|.|+-|.+|+++
T Consensus 532 LT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~---~~l~~~~YkQM~GRAGR~gidT~GdsiLI~ 608 (1008)
T KOG0950|consen 532 LTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGR---EFLTRLEYKQMVGRAGRTGIDTLGDSILII 608 (1008)
T ss_pred cccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcccc---chhhhhhHHhhhhhhhhcccccCcceEEEe
Confidence 99999999999999999999999999999999999999998544322 135778899999999999999999999999
Q ss_pred CCccHHHHHHHhcCCC-ccccchhH----hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCC
Q 043190 232 SHDKLAYYLRLLTSQL-PIESQFIS----SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIAD 306 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~ies~l~~----~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~ 306 (1492)
.+.+.....++++.+. |..|++.. .....+..-|+.+...+.+|...+...|+++.+...- .-....+.-...
T Consensus 609 k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~~~--~~~~~le~~s~q 686 (1008)
T KOG0950|consen 609 KSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEKPE--NVREQLEMESDQ 686 (1008)
T ss_pred eccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccchh--hhhhcccchhhh
Confidence 9999888888888876 67787754 2334567788899999999999999999998875422 111111110000
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccccc-ccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCC------CHHHHHHHhc
Q 043190 307 PSLSLKQRALVTDAARALDKAKMMRFD-EKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHM------NDSEVIEMVS 379 (1492)
Q Consensus 307 ~~~~~~~~~~~~~~l~~L~~~~~i~~~-~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~------~~~~ll~ils 379 (1492)
-.+.... -+++.+..+|... .....-.+|++|+..-.-.+++.-+..+...++..+ +...++.+..
T Consensus 687 l~~~~~~-------~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylvt 759 (1008)
T KOG0950|consen 687 LVINDFK-------SDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLYLVT 759 (1008)
T ss_pred hccchhh-------HHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceeeeec
Confidence 0111110 0223333333210 001112399999988888888887777777676543 1111111111
Q ss_pred CCccCCC-C----------ccchhHHHHHHHH--HhcCCccc-ccCC--C---CCh---hHHHHHHHHHHHcCCCCC---
Q 043190 380 HSSEFEN-I----------VVRDEEQNELETL--VQTLCPVE-VKGG--P---SNK---HGKISILIQLYISRGWID--- 434 (1492)
Q Consensus 380 ~s~Ef~~-i----------~~R~~e~~~l~~l--~~~~~~~~-~~~~--~---~~~---~~K~~~Llqa~i~~~~~~--- 434 (1492)
--.|-.+ + .+...++...+.+ ... +-+. .++. . ..+ ..-+.+.||.++++.++.
T Consensus 760 P~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~-fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~ 838 (1008)
T KOG0950|consen 760 PYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIES-FIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVA 838 (1008)
T ss_pred chHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHH-HHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 1101001 0 0111222111111 000 0000 0110 0 111 233778899999998876
Q ss_pred -CchhH-hhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-C
Q 043190 435 -TFSLV-SDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-D 511 (1492)
Q Consensus 435 -~~~l~-~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~ 511 (1492)
+|... +-....++++.....+..-.|...+|...-...-++.+++..+.-.+..||..+| .+...+++.|++.|+ |
T Consensus 839 ~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~-~~~~~RAr~lf~Agf~t 917 (1008)
T KOG0950|consen 839 EKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVP-DVKAERARQLFKAGFTS 917 (1008)
T ss_pred HHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCc-hhHHHHHHHHHHhhccc
Confidence 45544 8889999999999999999999999985555566788999999999999999999 999999999999999 9
Q ss_pred hhHHhhCCHHHHHHHhc
Q 043190 512 LDRLQEMEEKDIGALIR 528 (1492)
Q Consensus 512 ~~~l~~~~~~~~~~l~~ 528 (1492)
+.++++.++.++.+-+.
T Consensus 918 v~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 918 VGSIANATPEKLVKELP 934 (1008)
T ss_pred hHHHhcCChHHHHHHhh
Confidence 99999999999988775
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=384.75 Aligned_cols=336 Identities=19% Similarity=0.310 Sum_probs=247.0
Q ss_pred ccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHH
Q 043190 672 VTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 672 ~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~ 751 (1492)
...+..+.++..|||..|+|+|.++++.++ .++++++++|||+|||++|.+|++.. .+.++|++|+++|+.|++
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHH
Confidence 334445678888999999999999999998 78999999999999999999999864 568999999999999998
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhH--hhhcccCccccCcccEEEEecccccCC
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDG--ISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~--l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
+.+... |+.+..+.+....+.. .....+++++|||++.. +... ....+++++||||||++.+
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCcccccc
Confidence 887652 7777777776543321 12357899999998742 2221 1234789999999998853
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
+|..+...+..+..+... -++.+++++|||+++. .++..+++.....++. ....++. +...+.. .
T Consensus 154 -~G~~fr~~y~~L~~l~~~-~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~n-l~~~v~~--------~- 220 (607)
T PRK11057 154 -WGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPN-IRYTLVE--------K- 220 (607)
T ss_pred -ccCcccHHHHHHHHHHHh-CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCCc-ceeeeee--------c-
Confidence 333333333333333222 2467899999999873 4677777765543322 2222221 1111100 0
Q ss_pred cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 901 NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 901 ~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
......+...+ ....++++||||+|++.|+.++..|.+ .+..+..
T Consensus 221 ~~~~~~l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~----------------------------------~g~~v~~ 265 (607)
T PRK11057 221 FKPLDQLMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQS----------------------------------RGISAAA 265 (607)
T ss_pred cchHHHHHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHh----------------------------------CCCCEEE
Confidence 00001122222 234568899999999999999988743 2567899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| .+
T Consensus 266 ~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~------P~s~~~y~Qr~GRaGR~G--~~ 333 (607)
T PRK11057 266 YHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI------PRNIESYYQETGRAGRDG--LP 333 (607)
T ss_pred ecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCC------CCCHHHHHHHhhhccCCC--CC
Confidence 999999999999999999999999999999999999999999998 553 346899999999999988 78
Q ss_pred eEEEEEecCCcHHHHHHhhcCC
Q 043190 1061 GKAVILVHEPKKSFYKKFLYEP 1082 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~~l~~~ 1082 (1492)
|.|+++++..+...+.+++.+.
T Consensus 334 ~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 334 AEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred ceEEEEeCHHHHHHHHHHHhcC
Confidence 9999999998888888887654
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=386.32 Aligned_cols=334 Identities=20% Similarity=0.298 Sum_probs=251.9
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++..|||++|+|+|.++++.++ .|+|+++++|||+|||++|++|++.. ++.++|++|+++|+.|++..+..
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~-----~g~~lVisPl~sL~~dq~~~l~~- 75 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL-----KGLTVVISPLISLMKDQVDQLRA- 75 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHH-
Confidence 456788999999999999999999 78899999999999999999998853 57889999999999999888765
Q ss_pred hhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
+ |+.+..++|+...+.. .....+|+++|||++.... +.......+++++||||||++. .+|..++.
T Consensus 76 ~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~--~~~~l~~~~l~~iViDEaH~i~-~~g~~frp 148 (591)
T TIGR01389 76 A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY--FLNMLQRIPIALVAVDEAHCVS-QWGHDFRP 148 (591)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH--HHHHHhcCCCCEEEEeCCcccc-cccCccHH
Confidence 2 7888888887764422 1236799999999874211 1112224689999999999985 45555555
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAY 908 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1492)
.+.++..+....+ ..+++++|||.+. ..++..|++......+. ....|+ .+...+... ......+.
T Consensus 149 ~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-nl~~~v~~~---------~~~~~~l~ 216 (591)
T TIGR01389 149 EYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSFDRP-NLRFSVVKK---------NNKQKFLL 216 (591)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCC-CcEEEEEeC---------CCHHHHHH
Confidence 5555554444333 3349999999876 46788899876654432 222222 122111110 01111223
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
..+.. ..++++||||+|++.|+.++..|.. .+..+..+||+|+.+
T Consensus 217 ~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~----------------------------------~g~~~~~~H~~l~~~ 261 (591)
T TIGR01389 217 DYLKK-HRGQSGIIYASSRKKVEELAERLES----------------------------------QGISALAYHAGLSNK 261 (591)
T ss_pred HHHHh-cCCCCEEEEECcHHHHHHHHHHHHh----------------------------------CCCCEEEEECCCCHH
Confidence 33333 3367899999999999999987743 256789999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|.+|+++|||||+++++|||+|++++||+ |+. +.+..+|.||+|||||.| ..|.|+++++
T Consensus 262 ~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~------p~s~~~y~Q~~GRaGR~G--~~~~~il~~~ 329 (591)
T TIGR01389 262 VRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDM------PGNLESYYQEAGRAGRDG--LPAEAILLYS 329 (591)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCC------CCCHHHHhhhhccccCCC--CCceEEEecC
Confidence 9999999999999999999999999999999999998 443 336899999999999988 7899999999
Q ss_pred CCcHHHHHHhhcCCCc
Q 043190 1069 EPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1069 ~~~~~~~~~~l~~~~p 1084 (1492)
..+...+..++....+
T Consensus 330 ~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 330 PADIALLKRRIEQSEA 345 (591)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9888888888876554
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.90 Aligned_cols=331 Identities=18% Similarity=0.249 Sum_probs=243.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
||..|+|+|+|++|.++ +|.+++..|.||+|||++|++|-+-++..+ .+..+|+++|||+||.|+-.+..+
T Consensus 239 GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~k- 316 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKK- 316 (629)
T ss_pred cCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhH-
Confidence 99999999999999999 899999999999999999999987655432 467899999999999998877665
Q ss_pred hhhccCCEEEEEcCCCCcc--hh-ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPD--LM-ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVS 833 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~--~~-~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~ 833 (1492)
.... |.+..++.|+-... .. ...+.+|+++||++|..+... ....+..+.++|+|||+.|.+ ++.+++..++-
T Consensus 317 ysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMgFEpqIrkill 393 (629)
T KOG0336|consen 317 YSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMGFEPQIRKILL 393 (629)
T ss_pred hhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhcccccHHHHHHhh
Confidence 3322 66555555543322 22 234789999999999888765 455688999999999997654 78888777665
Q ss_pred HHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHh
Q 043190 834 RMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC 912 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 912 (1492)
-+ .++.+.++.|||.|. ...++.-.-..+.-+++-.-..-.+ ...................-..+.
T Consensus 394 di-------RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~------~sVkQ~i~v~~d~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 394 DI-------RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV------KSVKQNIIVTTDSEKLEIVQFFVA 460 (629)
T ss_pred hc-------CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeee------eeeeeeEEecccHHHHHHHHHHHH
Confidence 44 468899999999987 4555543322222222111111000 000111111100000111223345
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
..+...++||||.++..|..+...++- -++....+||+-.+.||+.
T Consensus 461 ~ms~ndKvIiFv~~K~~AD~LSSd~~l----------------------------------~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 461 NMSSNDKVIIFVSRKVMADHLSSDFCL----------------------------------KGISSQSLHGNREQSDREM 506 (629)
T ss_pred hcCCCceEEEEEechhhhhhccchhhh----------------------------------cccchhhccCChhhhhHHH
Confidence 567888999999999887776655532 1455677899999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
.++.|++|+++|||||+++++|+|+|++++|++ || ++..+.+|+||+||+||+| +.|+++.+....+.
T Consensus 507 al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yD------FP~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 507 ALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YD------FPRNIEEYVHRVGRTGRAG--RTGTSISFLTRNDW 574 (629)
T ss_pred HHHhhhcCceEEEEEechhhcCCCchhcceeec----cC------CCccHHHHHHHhcccccCC--CCcceEEEEehhhH
Confidence 999999999999999999999999999999998 44 4445999999999999999 99999999999887
Q ss_pred HHHHHhh
Q 043190 1073 SFYKKFL 1079 (1492)
Q Consensus 1073 ~~~~~~l 1079 (1492)
...+.++
T Consensus 575 ~~a~eLI 581 (629)
T KOG0336|consen 575 SMAEELI 581 (629)
T ss_pred HHHHHHH
Confidence 7766554
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=361.52 Aligned_cols=394 Identities=26% Similarity=0.438 Sum_probs=295.2
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+|. +.|+|++++..+- ++++++|+|.|.+|||.+|..+|...++. ..+++|..|-+||.+|.|+++...|+
T Consensus 126 YPF~-LDpFQ~~aI~Cid-r~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~---- 197 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCID-RGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK---- 197 (1041)
T ss_pred CCcc-cCchHhhhhhhhc-CCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc----
Confidence 3554 8999999999874 88999999999999999999999999886 79999999999999999999988885
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.|+..|||.+.+ ..+..+|+|.|.|.+++-+ +...++.+.+||+||+|.|- .+||.+||.-+-. +
T Consensus 198 -DVGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl-------l 263 (1041)
T KOG0948|consen 198 -DVGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL-------L 263 (1041)
T ss_pred -ccceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEEe-------c
Confidence 467899998765 4678999999999888877 44558899999999999885 4899999965432 3
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCC-cceeEecCCCccccCcEEEEeccCCc--c-------------ccccccc----
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVG-EIGLFNFKPSVRPVPLEVHIQGYPGK--F-------------YCPRMNS---- 902 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~-~~~~~~~~~~~r~~~l~~~~~~~~~~--~-------------~~~~~~~---- 902 (1492)
+.+.|.|++|||+||+.++++|+.-- .......-.++||.|+...+....+. + +...+..
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 67999999999999999999998532 22233335688999998765321111 0 0000000
Q ss_pred -----------------------cChhHHHHHhh--cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 903 -----------------------MNKPAYAAICT--HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 903 -----------------------~~~~~~~~l~~--~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
-...++..+.. .....|+|||+-|+++|+..|..+.+.-.+.+..+... ..-
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V---~~i 420 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV---ETI 420 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH---HHH
Confidence 00012222211 13456999999999999999988865432211110000 011
Q ss_pred HHHHHhhcCc--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEeccee
Q 043190 958 LQMVLSQVTD--------QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029 (1492)
Q Consensus 958 ~~~~~~~~~~--------~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~ 1029 (1492)
....+.++.+ +....++..||++|||||-+--++.|+-.|.+|-+++|+||.+++.|+|.|+.+||+-..+.
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccc
Confidence 1122223321 34556788999999999999999999999999999999999999999999999999988899
Q ss_pred eeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH-HHHhh-cCCCceeecccccchhhhHHHhhhC
Q 043190 1030 YDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-YKKFL-YEPFPVESSLRDQLHDHFNAEIVSG 1104 (1492)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~-~~~~l-~~~~pies~l~~~l~~~l~~ei~~~ 1104 (1492)
|||+..+| ++--+|+||.|||||.|.|..|.|++++++..... .+.++ ...-|+.|.++-...-.+|-.-+.+
T Consensus 501 fDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvEe 575 (1041)
T KOG0948|consen 501 FDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVEE 575 (1041)
T ss_pred cCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHcc
Confidence 99987654 57789999999999999999999999999875443 34444 4456777877765555555433333
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=350.47 Aligned_cols=325 Identities=19% Similarity=0.253 Sum_probs=244.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----------CCceEEEEcccHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----------SDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----------~~~~~l~i~P~r~La~q~~~~ 753 (1492)
++..|+|+|+-+++.+. .|+++++||+||||||.+|++|++..+... ..+.+++++|||+||.|++++
T Consensus 93 ~~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred cccCCCcceeeccceee-cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 89999999999999997 899999999999999999999999987654 147999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHH
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPIL 828 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~ 828 (1492)
.++ |....+.++....|+..... ....+++|+|||||+|.+++.. ....+++++++|+|||+.|.+ .+++.+
T Consensus 172 a~k-~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 ARK-FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHh-hcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccH
Confidence 887 44444777777777744322 2335899999999999998886 444588999999999997754 799999
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCC-cce--eEecCCCccccCcEEEEeccCCccccccccccC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVG-EIG--LFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMN 904 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~-~~~--~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 904 (1492)
+.++....... ....|.+++|||.|. ...++..+-.. ..- +-.+... ...+...+..+.. ....
T Consensus 249 r~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~--~~ni~q~i~~V~~-------~~kr 316 (482)
T KOG0335|consen 249 RKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST--SENITQKILFVNE-------MEKR 316 (482)
T ss_pred HHHhcccCCCC---ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc--cccceeEeeeecc-------hhhH
Confidence 99887664221 347889999999976 22233322211 110 0011111 1111111111111 1111
Q ss_pred hhHHHHHhhcC---CCC-----CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhcc
Q 043190 905 KPAYAAICTHS---PTK-----PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQF 976 (1492)
Q Consensus 905 ~~~~~~l~~~~---~~~-----~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 976 (1492)
..++..+.... ..+ .++|||.+++.|..++..|... ++
T Consensus 317 ~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~----------------------------------~~ 362 (482)
T KOG0335|consen 317 SKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN----------------------------------GY 362 (482)
T ss_pred HHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC----------------------------------CC
Confidence 22233332221 223 7999999999999999877442 56
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCC
Q 043190 977 GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGR 1054 (1492)
Q Consensus 977 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR 1054 (1492)
....+||..++.+|...++.|++|.+.+||||++++||+|+|+|++||+ +|+| ..+|+||+||+||
T Consensus 363 ~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn------------yDmP~d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 363 PAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN------------YDMPADIDDYVHRIGRTGR 430 (482)
T ss_pred CceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE------------eecCcchhhHHHhcccccc
Confidence 7788999999999999999999999999999999999999999999998 5555 8899999999999
Q ss_pred CCCCCceEEEEEecCCcHH
Q 043190 1055 PQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~ 1073 (1492)
.| ..|.++.|+......
T Consensus 431 ~G--n~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 431 VG--NGGRATSFFNEKNQN 447 (482)
T ss_pred CC--CCceeEEEeccccch
Confidence 98 899999999855533
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=340.00 Aligned_cols=341 Identities=21% Similarity=0.277 Sum_probs=258.7
Q ss_pred chhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHH
Q 043190 677 NNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 677 ~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~ 748 (1492)
..++.++. .|.+|+|+|.++++..+ .+++++-.|-||||||-+|++|++.++..+ .++..||++|||+||.
T Consensus 232 kqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~ 310 (731)
T KOG0339|consen 232 KQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELAS 310 (731)
T ss_pred HHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHH
Confidence 34455554 68899999999999998 899999999999999999999999877653 5788999999999999
Q ss_pred HHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 749 q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
|++.+.++ |++..|+++++++|+.+...+ ...++.|+|||||+|..++.. ....+.+++++|+||++.|-+ .+
T Consensus 311 Qi~~eaKk-f~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdmGf 387 (731)
T KOG0339|consen 311 QIFSEAKK-FGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDMGF 387 (731)
T ss_pred HHHHHHHH-hhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcccc
Confidence 99999877 777779999999887664332 125889999999999888875 344588999999999998754 56
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
.+++..|...+ .++.|.+++|||++. .+.+++-+-..+..+...........+...+. .+......
T Consensus 388 e~qVrSI~~hi-------rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~------V~~s~~~K 454 (731)
T KOG0339|consen 388 EPQVRSIKQHI-------RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVS------VCPSEEKK 454 (731)
T ss_pred HHHHHHHHhhc-------CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheee------eccCcHHH
Confidence 66666665544 578999999999975 45555544333333322111111111111111 11111111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
..-+...+......+++|+|+..+..++.++..| ..-++.|..+||
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~L----------------------------------klk~~~v~llhg 500 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANL----------------------------------KLKGFNVSLLHG 500 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHh----------------------------------ccccceeeeecC
Confidence 1112333445567789999999999999988776 223788999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
++.+.+|++++..|+.+...|||+|+++++|+|+|.+..||+ || +--++..+.||+||+||.| ..|.+
T Consensus 501 dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD------~ardIdththrigrtgRag--~kGva 568 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YD------FARDIDTHTHRIGRTGRAG--EKGVA 568 (731)
T ss_pred chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----cc------ccchhHHHHHHhhhccccc--cccee
Confidence 999999999999999999999999999999999999999998 44 2225889999999999998 78999
Q ss_pred EEEecCCcHHHHHHhhc
Q 043190 1064 VILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~ 1080 (1492)
|.++++.+.++.-.+.+
T Consensus 569 yTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 569 YTLVTEKDAEFAGHLVN 585 (731)
T ss_pred eEEechhhHHHhhHHHH
Confidence 99999988776554443
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=371.02 Aligned_cols=388 Identities=27% Similarity=0.409 Sum_probs=295.7
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
++|+ |.++|++++..+- .+++|+||||||||||.+++.++...+.. +.+++|++|.+||.+|.+.++..+|+.. .
T Consensus 116 ~~F~-LD~fQ~~a~~~Le-r~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 116 YPFE-LDPFQQEAIAILE-RGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred CCCC-cCHHHHHHHHHHh-CCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 4776 9999999999985 89999999999999999999999998886 6779999999999999999999988754 3
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
-.++.+|||.+.+ ..+.++|+|.|.|..++.+. ...+..+..||+||+|.+++ +||.++|.++-.+
T Consensus 191 ~~vGL~TGDv~IN----~~A~clvMTTEILRnMlyrg--~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l------- 257 (1041)
T COG4581 191 DMVGLMTGDVSIN----PDAPCLVMTTEILRNMLYRG--SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL------- 257 (1041)
T ss_pred hhccceecceeeC----CCCceEEeeHHHHHHHhccC--cccccccceEEEEeeeeccccccchhHHHHHHhc-------
Confidence 3578899998765 57899999999998888874 45688999999999999986 8999999877643
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCcc------c---ccc----ccccC----
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKF------Y---CPR----MNSMN---- 904 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~------~---~~~----~~~~~---- 904 (1492)
+..+++|+||||+||+.+++.|++... ...+....+.||+|+..++..-..-+ . ... .....
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 568899999999999999999998543 34555677899999987764321000 0 000 00000
Q ss_pred --h---------------------------hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCCh
Q 043190 905 --K---------------------------PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955 (1492)
Q Consensus 905 --~---------------------------~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 955 (1492)
. .-..........-|+++|+-|++.|+..+..+...- .....+.
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ld-------l~~~~~~ 410 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLD-------LVLTEEK 410 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccc-------cccCCcH
Confidence 0 000011112344589999999999999998775321 1112222
Q ss_pred HH-HHHH----HhhcC---------cHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcE
Q 043190 956 ED-LQMV----LSQVT---------DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL 1021 (1492)
Q Consensus 956 ~~-~~~~----~~~~~---------~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~ 1021 (1492)
+. +... +..+. -..+...+..|+++||+||-+..|..++..|..|.++|++||.+++.|+|.|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 2222 22222 1345677889999999999999999999999999999999999999999999999
Q ss_pred EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc--HHHHHHhh-cCCCceeecccccchhhhH
Q 043190 1022 VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK--KSFYKKFL-YEPFPVESSLRDQLHDHFN 1098 (1492)
Q Consensus 1022 ~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~--~~~~~~~l-~~~~pies~l~~~l~~~l~ 1098 (1492)
+|+.+...||+..+ .+++..+|.||.|||||.|.|..|.++++..+.. ......+. ..+.++.|.+...+.-.+|
T Consensus 491 vv~~~l~K~dG~~~--r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~miln 568 (1041)
T COG4581 491 VVFTSLSKFDGNGH--RWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN 568 (1041)
T ss_pred eeeeeeEEecCCce--eecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHh
Confidence 99999999998765 5679999999999999999999999999954332 22233333 4556777777655444443
|
|
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=313.38 Aligned_cols=292 Identities=22% Similarity=0.401 Sum_probs=239.8
Q ss_pred CCCCCHHHHHHHHhCCCCCC-----CCcCCCChhHHHHHhhcccc---eeecCCCCCCh-hHHHHHHHHHHhcCCCCCCc
Q 043190 1197 GPDTSLEVFLHILSGASEYD-----ELPVRHNEDNHNEALSQRVR---FAVDNNRLDDP-HVKANLLFQAHFSRLDLPIS 1267 (1492)
Q Consensus 1197 ~~~~~~~~ll~ils~a~Ef~-----~i~~R~~e~~~l~~l~~~~~---~~~~~~~~~~~-~~K~~lLlqa~l~r~~l~~~ 1267 (1492)
.+.+.+..++.+|+++.||. ++.-|..+.-++-+|.+.++ .+-..+.+..| +.|+.+||+|||+|++++..
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 45667788999999999995 67778888887777776654 22223334444 48999999999999999966
Q ss_pred chHhhHHHHHHhHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHH
Q 043190 1268 DYVTDLKSVLDQSIRIIQAMIDICANS------------GWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGT 1335 (1492)
Q Consensus 1268 ~l~~D~~~il~~~~rl~~a~~~i~~~~------------~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~ 1335 (1492)
.|..|+.+|++.|+||++.|+.+.... ..+.+..|||.|++|++||+|.. .+||+|||||.+..+++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqf-kSPLLQLPHitednL~~ 166 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQF-KSPLLQLPHITEDNLQH 166 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHh-cChhhcCCccchHHHHH
Confidence 899999999999999999999987543 13567789999999999999998 99999999999999999
Q ss_pred HHh-CCCCCHHHHhcCCHHHHhhhh---CCchHHHHHHHhcCCCceEEEEEEEeccC------CCCCeEEEEEEEEeccC
Q 043190 1336 LRA-RGISTVQQLLDIPKENLQTVI---GNFPVSRLHQDLQRFPRIQVKLRLQRRDI------DGENSLTLNIRMDKMNS 1405 (1492)
Q Consensus 1336 l~~-~~i~s~~~l~~~~~~~~~~~l---~~~~~~~i~~~~~~~P~i~i~~~~~~~~~------~~~~~~~l~v~l~~~~~ 1405 (1492)
+.+ +.|+|++||+.+.++.++.+| ++...++++.+++++|.+.|+++.++.+. ..|..+|++|+++|...
T Consensus 167 ~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l 246 (520)
T KOG4434|consen 167 LRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRL 246 (520)
T ss_pred HhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEeccc
Confidence 976 459999999999988888774 57789999999999999999888877664 57889999999998310
Q ss_pred C--------------------CCCCc------------------------------------------------------
Q 043190 1406 W--------------------KNTSR------------------------------------------------------ 1411 (1492)
Q Consensus 1406 ~--------------------~~~~~------------------------------------------------------ 1411 (1492)
. +.+..
T Consensus 247 ~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at 326 (520)
T KOG4434|consen 247 IDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPAT 326 (520)
T ss_pred cChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhh
Confidence 0 00000
Q ss_pred --------------------------------------------------------------------------cccccC
Q 043190 1412 --------------------------------------------------------------------------AFALRF 1417 (1492)
Q Consensus 1412 --------------------------------------------------------------------------~~~p~~ 1417 (1492)
+|||||
T Consensus 327 ~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyF 406 (520)
T KOG4434|consen 327 EKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYF 406 (520)
T ss_pred hhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCC
Confidence 999999
Q ss_pred CCCccceEEEEEEeCCCCeEEEEE--EeecCCc--ceEEEEecCCCCCcceEEEEEEeCCCCCccEEEEEEEEEecc
Q 043190 1418 PKIKDEAWWLVLGNTNTSELYALK--RISFSDR--LNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490 (1492)
Q Consensus 1418 p~~k~e~w~~~v~d~~~~~l~~~~--r~~~~~~--~~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~~v~~~ 1490 (1492)
|..|+|.||++|+|.++..|+.+- -..+... ...+|.+|.. ||.|.|+|++-||||+|+|+..++++.|++-
T Consensus 407 PeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~-pG~Ytytv~lrSDSYmg~dq~~~lKldV~eA 482 (520)
T KOG4434|consen 407 PEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGK-PGNYTYTVFLRSDSYMGLDQIKPLKLDVHEA 482 (520)
T ss_pred cchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCC-CCceEEEEEEecccccChhhccceeeeeccC
Confidence 999999999999999999998752 2233333 3366778866 6999999999999999999999999999863
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=334.90 Aligned_cols=441 Identities=19% Similarity=0.195 Sum_probs=323.5
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+..+ ++++.+||.|+||||||+.....+.+.-... .+++.+..|+|-.|..+++++....+..+|..|+... ..
T Consensus 59 il~~v-e~nqvlIviGeTGsGKSTQipQyL~eaG~~~-~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I---RF 133 (674)
T KOG0922|consen 59 ILYAV-EDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI---RF 133 (674)
T ss_pred HHHHH-HHCCEEEEEcCCCCCccccHhHHHHhccccc-CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE---Ee
Confidence 44444 4789999999999999999998888865543 4559999999999999999999888777777776543 22
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
+......+.|.+.|.|. ++|....+..++++++||+|||| +|....+.++..++++... .++.++|.||||+
T Consensus 134 ed~ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki~~~-R~~LklIimSATl 205 (674)
T KOG0922|consen 134 EDSTSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKILKK-RPDLKLIIMSATL 205 (674)
T ss_pred cccCCCceeEEEecchH---HHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHHHhc-CCCceEEEEeeee
Confidence 33333478999999995 55666667889999999999999 7777888888888877653 5678999999998
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
+++.+.+||+..+. +.-+.|..|+++.+...+...|.... -.....|....+.+.+|||.++.++.+.++.
T Consensus 206 -da~kfS~yF~~a~i----~~i~GR~fPVei~y~~~p~~dYv~a~----~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 206 -DAEKFSEYFNNAPI----LTIPGRTFPVEILYLKEPTADYVDAA----LITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred -cHHHHHHHhcCCce----EeecCCCCceeEEeccCCchhhHHHH----HHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 79999999987442 34466777888777654444443211 1122334445778899999999999999998
Q ss_pred HHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 043190 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015 (1492)
Q Consensus 936 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gv 1015 (1492)
.|.+....... ....-+.++||.|+.+++..|++.-..|..+|++||++++.++
T Consensus 277 ~l~e~~~~~~~--------------------------~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 277 LLRERAKSLPE--------------------------DCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSL 330 (674)
T ss_pred HHHHHhhhccc--------------------------cCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeE
Confidence 88776433211 0111367899999999999999999999999999999999999
Q ss_pred CCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceee
Q 043190 1016 NLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVES 1087 (1492)
Q Consensus 1016 dip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies 1087 (1492)
+||++.+||.+. ..|+++.+. ..++|.++..||.|||||.| +|.||.++++.+ |.++..+..|-
T Consensus 331 TI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~~~~~~~PE-- 402 (674)
T KOG0922|consen 331 TIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDKMPLQTVPE-- 402 (674)
T ss_pred EecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---HhhcccCCCCc--
Confidence 999999999753 568887662 35678999999999999986 999999998755 56666665552
Q ss_pred cccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecC
Q 043190 1088 SLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE 1167 (1492)
Q Consensus 1088 ~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~ 1167 (1492)
.....|...++...+.|. . |.+ ++.|+ +. +-.+.+..|++.|...|+|+.++
T Consensus 403 I~R~~Ls~~vL~Lkalgi-~---d~l---~F~f~--------------d~-------P~~~~l~~AL~~L~~lgald~~g 454 (674)
T KOG0922|consen 403 IQRVNLSSAVLQLKALGI-N---DPL---RFPFI--------------DP-------PPPEALEEALEELYSLGALDDRG 454 (674)
T ss_pred eeeechHHHHHHHHhcCC-C---Ccc---cCCCC--------------CC-------CChHHHHHHHHHHHhcCcccCcC
Confidence 223345555555544442 1 222 22221 11 11355678999999999997443
Q ss_pred Ccccccc-chhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChh
Q 043190 1168 DTVEPTM-LGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNED 1225 (1492)
Q Consensus 1168 ~~~~~T~-lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~ 1225 (1492)
.. |+ +|+.||.++++|...++++.+-..++ .++++.+++..+ ..++..|..+.
T Consensus 455 ~l---t~p~G~~ma~~Pl~p~lsk~ll~s~~~gc-~~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 455 KL---TSPLGRQMAELPLEPHLSKMLLKSSELGC-SEEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred Cc---CchHHhhhhhcCCCcchhhhhhhccccCC-cchhhhheeeee-ccceecCccch
Confidence 32 55 99999999999999999987655444 455665555444 44555555443
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=334.70 Aligned_cols=346 Identities=20% Similarity=0.254 Sum_probs=246.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------------CCc--eEE
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------------SDM--KVV 738 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------------~~~--~~l 738 (1492)
|+.+.++++- ||..|++||+.++|.+..+..+++..|.||||||++|-+||+..+... ... ..|
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 3445555554 999999999999999985558999999999999999999999844321 133 499
Q ss_pred EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccC-ccccCcccEEEE
Q 043190 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHS-RNYVKKVGLMIL 814 (1492)
Q Consensus 739 ~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~-~~~l~~i~liVi 814 (1492)
+++|||+||.|+.+.+.. .....|+++..++|+.....+. ...++|+|+|||+|..++..... -..+++++++|+
T Consensus 268 V~tPTRELa~QV~~Hl~a-i~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVl 346 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKA-IAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVL 346 (731)
T ss_pred EecChHHHHHHHHHHHHH-hccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEE
Confidence 999999999999999877 5556699999999998755432 23789999999999888876433 345789999999
Q ss_pred ecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH----------------------HHHHhcCCcc-
Q 043190 815 DEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD----------------------LADWLGVGEI- 870 (1492)
Q Consensus 815 DEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~----------------------~~~~l~~~~~- 870 (1492)
||+|+|.+ +....+..++..+. -.+.....|.+.+|||+.-..+ +..-+|....
T Consensus 347 DEaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp 424 (731)
T KOG0347|consen 347 DEADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP 424 (731)
T ss_pred ccHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC
Confidence 99998754 33334555555543 1344567899999999853110 1111111100
Q ss_pred eeEecCCCccccCcEEEEeccCCccccccccccChh--HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 871 GLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP--AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 871 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
.++...+......- + ......| ....+. +|..+. .-.|++|||||+...+.+++-.|
T Consensus 425 kiiD~t~q~~ta~~---l--~Es~I~C---~~~eKD~ylyYfl~--ryPGrTlVF~NsId~vKRLt~~L----------- 483 (731)
T KOG0347|consen 425 KIIDLTPQSATAST---L--TESLIEC---PPLEKDLYLYYFLT--RYPGRTLVFCNSIDCVKRLTVLL----------- 483 (731)
T ss_pred eeEecCcchhHHHH---H--HHHhhcC---CccccceeEEEEEe--ecCCceEEEechHHHHHHHHHHH-----------
Confidence 11110000000000 0 0000000 000011 111111 23678999999999998888766
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecce
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTE 1028 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~ 1028 (1492)
+.++.....+|+.|.+..|...++.|++..-.|||||++++||+|||++.+||+
T Consensus 484 -----------------------~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--- 537 (731)
T KOG0347|consen 484 -----------------------NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--- 537 (731)
T ss_pred -----------------------hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE---
Confidence 334566778899999999999999999999999999999999999999999998
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhh
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
|. ++-+..-|+||.||+.|++ ..|..++|+.+.+...|.++.
T Consensus 538 -Yq------VPrtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 538 -YQ------VPRTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred -ee------cCCccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHH
Confidence 44 3334678999999999998 899999999999988777764
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=367.27 Aligned_cols=441 Identities=17% Similarity=0.165 Sum_probs=281.5
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+..+ .+++.++|+|+||||||+.....++.. .....+.+++..|+|-.|.+.+.++...++..+|..|+.-. ..
T Consensus 82 Il~ai-~~~~VviI~GeTGSGKTTqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v---rf 156 (1294)
T PRK11131 82 ILEAI-RDHQVVIVAGETGSGKTTQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV---RF 156 (1294)
T ss_pred HHHHH-HhCCeEEEECCCCCCHHHHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee---cC
Confidence 34444 477899999999999999654334432 22224578888998866666666666666544455444322 12
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
+.....+++|+|+|||++...+.. ...++++++|||||||... ...+.++..++.+... .++.|+|+||||+
T Consensus 157 ~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERs----Ln~DfLLg~Lk~lL~~-rpdlKvILmSATi 228 (1294)
T PRK11131 157 NDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERS----LNIDFILGYLKELLPR-RPDLKVIITSATI 228 (1294)
T ss_pred ccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccc----cccchHHHHHHHhhhc-CCCceEEEeeCCC
Confidence 222335789999999998777664 3458999999999999421 1122223334433322 2468999999999
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHh--hcCCCCCeeEEecChHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC--THSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~LIF~~s~~~~~~~ 933 (1492)
+.+.++++++..+ ++... .+..+++..+........... ......+...+. .....+.+|||++++.+++.+
T Consensus 229 -d~e~fs~~F~~ap--vI~V~--Gr~~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~l 302 (1294)
T PRK11131 229 -DPERFSRHFNNAP--IIEVS--GRTYPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDT 302 (1294)
T ss_pred -CHHHHHHHcCCCC--EEEEc--CccccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHH
Confidence 4678888886433 22222 233444443332211100000 000011111111 124568899999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
+..|.+.. .....|..+||+|++++|..+++. .|..+|||||+++++
T Consensus 303 ae~L~~~~-------------------------------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEt 349 (1294)
T PRK11131 303 ADALNKLN-------------------------------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAET 349 (1294)
T ss_pred HHHHHhcC-------------------------------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhh
Confidence 98885421 012347889999999999999986 588999999999999
Q ss_pred ccCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCce
Q 043190 1014 GVNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV 1085 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pi 1085 (1492)
|||+|++++||+.. ..||+..+. ..++|.++|.||+|||||.+ +|.||.++++.+. ..+. ..+.
T Consensus 350 SITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~---~~~~--~~~~ 421 (1294)
T PRK11131 350 SLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF---LSRP--EFTD 421 (1294)
T ss_pred ccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH---Hhhh--cccC
Confidence 99999999999853 467776541 12356789999999999984 8999999987553 3322 1222
Q ss_pred eecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCcee
Q 043190 1086 ESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM 1165 (1492)
Q Consensus 1086 es~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~ 1165 (1492)
..-+...|...++.....| +.+. .+| .| +++. -.+.|.+++..|.+.|+|+.
T Consensus 422 PEIlR~~L~~viL~lk~lg-l~di---~~F---~f-------------ldpP--------~~~~i~~al~~L~~LgAld~ 473 (1294)
T PRK11131 422 PEILRTNLASVILQMTALG-LGDI---AAF---PF-------------VEAP--------DKRNIQDGVRLLEELGAITT 473 (1294)
T ss_pred CccccCCHHHHHHHHHHcC-CCCc---cee---eC-------------CCCC--------CHHHHHHHHHHHHHCCCCCc
Confidence 2334445555555444443 2221 111 01 1111 13567899999999999976
Q ss_pred cCC--ccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhH
Q 043190 1166 TED--TVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226 (1492)
Q Consensus 1166 ~~~--~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~ 1226 (1492)
+++ ...+|++|+.+|++|++|..+++++.+.... +..+++.|.|.-+ ..+...|+.+..
T Consensus 474 ~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~-c~~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 474 DEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHG-CVREVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred cccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcC-CHHHHHHHHHHHc-CCCcccCCchhH
Confidence 532 3678999999999999999999999876655 4555555444322 234445555443
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=323.57 Aligned_cols=318 Identities=20% Similarity=0.256 Sum_probs=240.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc---------cCCCceEEEEcccHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN---------TQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~---------~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
|+.+|+|+|.|.+|.++ +|+++|..|-||||||++|.+|++-... .+.++..++|+|+|+||.|+++-+.
T Consensus 189 GI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 99999999999999999 8999999999999999999999875322 3357899999999999999998777
Q ss_pred HHhhhc-----cCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 756 DRLVSQ-----LGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 756 ~~~~~~-----~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
..+... ..++...+.|+.+.... ...+.+|+|+||++|.+++.+. ...+.-++++.+|||+++.+ .+..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK--~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK--IMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh--hccHHHHHHhhhhhHHHHhhccchh
Confidence 654433 12455566676654322 2357899999999998888763 33477889999999997654 6777
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccc---cccc
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP---RMNS 902 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~---~~~~ 902 (1492)
.+..+++.++ ...|.+++|||+|. ...++. +.-..|+.+.+...+-..-.... ....
T Consensus 346 dir~iF~~FK-------~QRQTLLFSATMP~KIQ~FAk------------SALVKPvtvNVGRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 346 DIRTIFSFFK-------GQRQTLLFSATMPKKIQNFAK------------SALVKPVTVNVGRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred hHHHHHHHHh-------hhhheeeeeccccHHHHHHHH------------hhcccceEEecccccccchhHHHHHHHHHh
Confidence 7777777665 36788999999985 222222 22334444444332221111111 1111
Q ss_pred cChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
..+.+|..-+......|+||||..+.++..+.++|.- -+..+..+|
T Consensus 407 EaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl----------------------------------KGVEavaIH 452 (610)
T KOG0341|consen 407 EAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLL----------------------------------KGVEAVAIH 452 (610)
T ss_pred hhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHH----------------------------------ccceeEEee
Confidence 1222222222334567899999999999988887732 256678899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCc
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~ 1060 (1492)
||-++++|...+++|+.|+-+|||||++++.|+|+|++.+||+ +|+| +.+|+||+||+||.| +.
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN------------yDMP~eIENYVHRIGRTGRsg--~~ 518 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN------------YDMPEEIENYVHRIGRTGRSG--KT 518 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc------------CCChHHHHHHHHHhcccCCCC--Cc
Confidence 9999999999999999999999999999999999999999998 6676 889999999999988 89
Q ss_pred eEEEEEecCCcH
Q 043190 1061 GKAVILVHEPKK 1072 (1492)
Q Consensus 1061 G~~i~l~~~~~~ 1072 (1492)
|.+..|......
T Consensus 519 GiATTfINK~~~ 530 (610)
T KOG0341|consen 519 GIATTFINKNQE 530 (610)
T ss_pred ceeeeeecccch
Confidence 999999876653
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=330.82 Aligned_cols=457 Identities=16% Similarity=0.171 Sum_probs=335.8
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM 769 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~ 769 (1492)
+++-.+.+.++- .++.++|.|.||||||++....+.+.-....+.++-+..|+|..|..++.++.+.++..+|..|+..
T Consensus 267 y~ykdell~av~-e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs 345 (902)
T KOG0923|consen 267 YPYKDELLKAVK-EHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS 345 (902)
T ss_pred hhhHHHHHHHHH-hCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceE
Confidence 455556666664 7899999999999999999888887655545667999999999999999998888766656555442
Q ss_pred cCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEE
Q 043190 770 TGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFI 849 (1492)
Q Consensus 770 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii 849 (1492)
. ..+.....++-|-++|.|+| +|.......|.++++||||||| +|....+.++..++.+.. ..++.+++
T Consensus 346 I---RFEdcTSekTvlKYMTDGmL---lREfL~epdLasYSViiiDEAH----ERTL~TDILfgLvKDIar-~RpdLKll 414 (902)
T KOG0923|consen 346 I---RFEDCTSEKTVLKYMTDGML---LREFLSEPDLASYSVIIVDEAH----ERTLHTDILFGLVKDIAR-FRPDLKLL 414 (902)
T ss_pred E---EeccccCcceeeeeecchhH---HHHHhccccccceeEEEeehhh----hhhhhhhHHHHHHHHHHh-hCCcceEE
Confidence 1 22222334677899999964 4555566779999999999999 666667777777766654 35799999
Q ss_pred EEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHH
Q 043190 850 GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ 929 (1492)
Q Consensus 850 ~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~ 929 (1492)
.+|||+ +++.+..||+..+ +| .-+.|..|+.+.+..-+...|..... .....|....+.+.+|||.....+
T Consensus 415 IsSAT~-DAekFS~fFDdap--IF--~iPGRRyPVdi~Yt~~PEAdYldAai----~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 415 ISSATM-DAEKFSAFFDDAP--IF--RIPGRRYPVDIFYTKAPEADYLDAAI----VTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eecccc-CHHHHHHhccCCc--EE--eccCcccceeeecccCCchhHHHHHH----hhheeeEeccCCccEEEEeccHHH
Confidence 999998 8999999998665 33 44566677777665555544432111 011223334677999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecc
Q 043190 930 TRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009 (1492)
Q Consensus 930 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~ 1009 (1492)
.+.+...|.+.+..-+. .....-+.++|+.|+.+.+..|++.-..|..+|++||+
T Consensus 486 IEt~~e~l~~~~~~LGs-------------------------ki~eliv~PiYaNLPselQakIFePtP~gaRKVVLATN 540 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGS-------------------------KIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATN 540 (902)
T ss_pred HHHHHHHHHHHHHHhcc-------------------------ccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeec
Confidence 88887777554322111 11134578899999999999999999999999999999
Q ss_pred ccccccCCCCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1010 TLAWGVNLPAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1010 ~l~~Gvdip~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
+++.+++|+++.+||... ..|+++.+ ...++|.++..||+|||||.| +|.|+.+++. ..|.+.+..
T Consensus 541 IAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~---~aY~~eLE~ 614 (902)
T KOG0923|consen 541 IAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA---WAYEHELEE 614 (902)
T ss_pred chhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech---hhhhhhhcc
Confidence 999999999999999643 34677665 235678999999999999997 9999999875 335555543
Q ss_pred CCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCC
Q 043190 1082 PFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSG 1161 (1492)
Q Consensus 1082 ~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~ 1161 (1492)
.++.......|...++...+.| ..|.++| .|+ ++.. .+.+..+|+.|...|
T Consensus 615 -~t~PEIqRtnL~nvVL~LkSLG----I~Dl~~F---dFm-------------DpPp--------~etL~~aLE~LyaLG 665 (902)
T KOG0923|consen 615 -MTVPEIQRTNLGNVVLLLKSLG----IHDLIHF---DFL-------------DPPP--------TETLLKALEQLYALG 665 (902)
T ss_pred -CCCcceeeccchhHHHHHHhcC----cchhccc---ccC-------------CCCC--------hHHHHHHHHHHHHhh
Confidence 2333444566777777666666 2233322 221 1111 244668999999999
Q ss_pred CceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHh
Q 043190 1162 CVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEAL 1231 (1492)
Q Consensus 1162 ~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l 1231 (1492)
++... .++|.+|+.|+.||++|..++++..+-+-. +.++++.|.+..+.+..+..|+.+....+.-
T Consensus 666 ALn~~---GeLTk~GrrMaEfP~dPmlsKmi~as~ky~-cs~EiitiaamlS~~~svfyrpk~~~v~ad~ 731 (902)
T KOG0923|consen 666 ALNHL---GELTKLGRRMAEFPVDPMLSKMIVASEKYK-CSEEIITIAAMLSVGASVFYRPKDKQVHADN 731 (902)
T ss_pred ccccc---cchhhhhhhhhhcCCCHHHHhHHhhhcccc-chHHHHHHHHHHhcCchheecchhhhhhhhh
Confidence 99654 456999999999999999999999776555 4478999999999999999999876555443
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=325.03 Aligned_cols=349 Identities=22% Similarity=0.302 Sum_probs=242.3
Q ss_pred CCCCCCHHHHHHHHhhhc--------CCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYH--------TDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~--------~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
+++.+.|+|.++++.++. ..+++.|.||||||||++|.+||++.+... +.-++++|+|+++|+.|++..|
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f 235 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF 235 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH
Confidence 788999999999998852 257999999999999999999999998764 2458999999999999999999
Q ss_pred HHHhhhccCCEEEEEcCCCCcchhc--------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-Cc
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLMA--------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RG 825 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~~--------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g 825 (1492)
.+ +....|+.|+.+.|.-+..... ....||+|+|||+|.+.+++. ....|++++++||||||++.+. +.
T Consensus 236 ~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 236 KR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred HH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechHHHHHHHHHH
Confidence 87 4444599999999865543221 124599999999998888863 3456899999999999987542 22
Q ss_pred cHHHHHHHHHHHh---------hh------------------ccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCC
Q 043190 826 PILEVIVSRMRYI---------SS------------------QTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 826 ~~~~~i~~~l~~~---------~~------------------~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~ 877 (1492)
..+..+...++.. .. ...++...+.+|||+.. +..+.++ ....+.++....
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~l~~Prl~~v~~ 392 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-TLHIPRLFHVSK 392 (620)
T ss_pred HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-hcCCCceEEeec
Confidence 2222222222110 00 00122234556666644 3333332 111111111100
Q ss_pred CccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 878 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
|......+...-...++.....+.......+....+..++|+|+++...+.+++..|.-....
T Consensus 393 ---~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-------------- 455 (620)
T KOG0350|consen 393 ---PLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-------------- 455 (620)
T ss_pred ---ccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc--------------
Confidence 000000000000111111112223333344445566789999999999999999877533221
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCcc
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~ 1037 (1492)
....+..+.|+++...|...++.|..|.+++||||++++||+|+.+++.||+ ||++
T Consensus 456 ----------------~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~P---- 511 (620)
T KOG0350|consen 456 ----------------DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDPP---- 511 (620)
T ss_pred ----------------ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee----cCCC----
Confidence 2345566899999999999999999999999999999999999999999999 6643
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1038 ~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
.+..+|+||+||++|+| +.|.|+.+....+...+.+++..
T Consensus 512 --~~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 512 --ASDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred --chhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 35779999999999999 89999999999988888888754
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=309.38 Aligned_cols=354 Identities=18% Similarity=0.241 Sum_probs=247.2
Q ss_pred cccCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhh-cCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceE
Q 043190 662 TELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILY-HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKV 737 (1492)
Q Consensus 662 ~~l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~-~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~ 737 (1492)
+++-+...+..-.|.++.++.+| +|..|+.+|..++|-++ +..+|+|..+..|+|||.+|.+.||.+.... ..+++
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 33444444444456678888888 99999999999999987 3457999999999999999999999876542 35889
Q ss_pred EEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecc
Q 043190 738 VYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEI 817 (1492)
Q Consensus 738 l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEa 817 (1492)
++++|+|+||.|+.+.+.+ .+++.+++......+...........+|+++||+.+.+++.+.. ...+..++.+|+|||
T Consensus 164 iCLaPtrELA~Q~~eVv~e-MGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEE-MGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFVLDEA 241 (477)
T ss_pred eeeCchHHHHHHHHHHHHH-hcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEEecch
Confidence 9999999999999988876 56554555555444332222233457999999999877777632 234788999999999
Q ss_pred cccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccc
Q 043190 818 HLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFY 896 (1492)
Q Consensus 818 H~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 896 (1492)
+.+.+.+|..=. ..++.. ..++..|++++|||... ...++.-+--+. .......+ +..+..+.. .+
T Consensus 242 D~Mi~tqG~~D~--S~rI~~---~lP~~~QllLFSATf~e~V~~Fa~kivpn~-n~i~Lk~e------el~L~~IkQ-ly 308 (477)
T KOG0332|consen 242 DVMIDTQGFQDQ--SIRIMR---SLPRNQQLLLFSATFVEKVAAFALKIVPNA-NVIILKRE------ELALDNIKQ-LY 308 (477)
T ss_pred hhhhhccccccc--chhhhh---hcCCcceEEeeechhHHHHHHHHHHhcCCC-ceeeeehh------hccccchhh-he
Confidence 976544432211 112221 23568999999999854 223333221111 11110000 011111111 11
Q ss_pred cccccccChhHHHHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 897 CPRMNSMNKPAYAAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 897 ~~~~~~~~~~~~~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
... ......+..+ .....-++.||||.|++.+..++..+...
T Consensus 309 v~C--~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~--------------------------------- 353 (477)
T KOG0332|consen 309 VLC--ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE--------------------------------- 353 (477)
T ss_pred eec--cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------------------------------
Confidence 110 0111123332 22344578999999999999999888542
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
++.|..+||.|..++|..+.+.|+.|.-+|||+|++.+||+|++.+.+||+ ||-+....-.-..+.|+||+||+|
T Consensus 354 -Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtG 428 (477)
T KOG0332|consen 354 -GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTG 428 (477)
T ss_pred -CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhcccc
Confidence 778999999999999999999999999999999999999999999999998 665543222224889999999999
Q ss_pred CCCCCCceEEEEEecCCcH
Q 043190 1054 RPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~ 1072 (1492)
|-| +.|.++.|+...+.
T Consensus 429 RFG--kkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 429 RFG--KKGLAINLVDDKDS 445 (477)
T ss_pred ccc--ccceEEEeecccCc
Confidence 966 99999999987653
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=361.51 Aligned_cols=441 Identities=17% Similarity=0.145 Sum_probs=287.7
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+...+.+++.++|+|+||||||+.....++..-. ...++|++..|+|..|..++.++.+.++..+|..|+.. ...
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~-~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~---vR~ 149 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQLPKICLELGR-GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK---VRF 149 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCC-CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE---EcC
Confidence 34444457889999999999999987666655321 23468889999999999999988887765555555432 222
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
+.....+++|.|+|+|.|...+.. +..++++++|||||+|. |....+.++..++.+... .++.|+|+||||+
T Consensus 150 ~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHE----RsL~~D~LL~lLk~il~~-rpdLKlIlmSATl 221 (1283)
T TIGR01967 150 HDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHE----RSLNIDFLLGYLKQLLPR-RPDLKIIITSATI 221 (1283)
T ss_pred CcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcch----hhccchhHHHHHHHHHhh-CCCCeEEEEeCCc
Confidence 223335789999999988666543 45689999999999993 222333444444444322 3578999999999
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh--cCCCCCeeEEecChHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT--HSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LIF~~s~~~~~~~ 933 (1492)
+.+.++++++..+ ++.. ..+..|++..+.......... .......+...+.. ....+.+|||++++++++.+
T Consensus 222 -d~~~fa~~F~~ap--vI~V--~Gr~~PVev~Y~~~~~~~~~~-~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 222 -DPERFSRHFNNAP--IIEV--SGRTYPVEVRYRPLVEEQEDD-DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDA 295 (1283)
T ss_pred -CHHHHHHHhcCCC--EEEE--CCCcccceeEEecccccccch-hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHH
Confidence 5688999886543 2222 234444544433211100000 00000111111211 12458999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
+..|.+... .+..+..+||+|+.++|..+++.+ +..+|||||+++++
T Consensus 296 ~~~L~~~~~-------------------------------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEt 342 (1283)
T TIGR01967 296 AEILRKRNL-------------------------------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAET 342 (1283)
T ss_pred HHHHHhcCC-------------------------------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHh
Confidence 988754210 124588999999999999997654 34799999999999
Q ss_pred ccCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCce
Q 043190 1014 GVNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV 1085 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pi 1085 (1492)
|+|+|++++||+.. ..||+..+. ..++|.++|.||+|||||.| +|.||.++++.+... +... +.
T Consensus 343 SLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~---~~~~--~~ 414 (1283)
T TIGR01967 343 SLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS---RPEF--TD 414 (1283)
T ss_pred ccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh---hhhc--cC
Confidence 99999999999853 457766542 13457899999999999986 999999998765432 2211 11
Q ss_pred eecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCcee
Q 043190 1086 ESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM 1165 (1492)
Q Consensus 1086 es~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~ 1165 (1492)
...+...|...++.....| +.+..+ | .| +++.+ .+.++.++..|...|+|+.
T Consensus 415 PEIlR~~L~~viL~l~~lg-~~di~~---f---~f-------------ldpP~--------~~~i~~A~~~L~~LGAld~ 466 (1283)
T TIGR01967 415 PEILRTNLASVILQMLALR-LGDIAA---F---PF-------------IEAPD--------PRAIRDGFRLLEELGALDD 466 (1283)
T ss_pred cccccccHHHHHHHHHhcC-CCCccc---c---cC-------------CCCCC--------HHHHHHHHHHHHHCCCCCC
Confidence 1233344555554443333 222111 1 00 11111 3567899999999999976
Q ss_pred cCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChh
Q 043190 1166 TEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNED 1225 (1492)
Q Consensus 1166 ~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~ 1225 (1492)
+++...+|++|+.+|.+|++|..+++++.+.... +...++.+.|.-++ .+...|+.+.
T Consensus 467 ~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~g-cl~e~l~IaA~Ls~-~dp~~~p~~~ 524 (1283)
T TIGR01967 467 DEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLG-CLQEVLIIASALSI-QDPRERPMEK 524 (1283)
T ss_pred CCCCccccHHHHHHhhcCCChHHHHHHHHhhhcC-CHHHHHHHHHHHcC-CCcCCCcchh
Confidence 5544678999999999999999999999876655 44556555544333 3444454443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.57 Aligned_cols=456 Identities=17% Similarity=0.185 Sum_probs=326.7
Q ss_pred HHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEc
Q 043190 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMT 770 (1492)
Q Consensus 691 ~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~ 770 (1492)
..+.+.+..+- .++.++|.|.||||||+.....+++.-.. ..+.+-+..|+|..|..+++++...++-.+|..|+...
T Consensus 359 ~~R~~ll~~ir-~n~vvvivgETGSGKTTQl~QyL~edGY~-~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 359 ACRDQLLSVIR-ENQVVVIVGETGSGKTTQLAQYLYEDGYA-DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHHHHHHHh-hCcEEEEEecCCCCchhhhHHHHHhcccc-cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 34555565554 78899999999999999988877765332 35789999999999999999999888665566555432
Q ss_pred CCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEE
Q 043190 771 GDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIG 850 (1492)
Q Consensus 771 g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~ 850 (1492)
. .+......+.|-++|.| .++|....+..|.++++||+|||| +|....+.++..++..... ..+.++|.
T Consensus 437 R---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAH----ERslNtDilfGllk~~lar-RrdlKliV 505 (1042)
T KOG0924|consen 437 R---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAH----ERSLNTDILFGLLKKVLAR-RRDLKLIV 505 (1042)
T ss_pred E---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhh----hcccchHHHHHHHHHHHHh-hccceEEE
Confidence 1 12222245789999999 456665566779999999999999 6666777777777665443 45899999
Q ss_pred EcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHH
Q 043190 851 LSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQT 930 (1492)
Q Consensus 851 lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~ 930 (1492)
+|||+ +++.++.|||..+. |.-+.|..|+++.+...+...|....- + ....|....+.+.+|||.+.+..+
T Consensus 506 tSATm-~a~kf~nfFgn~p~----f~IpGRTyPV~~~~~k~p~eDYVeaav---k-q~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 506 TSATM-DAQKFSNFFGNCPQ----FTIPGRTYPVEIMYTKTPVEDYVEAAV---K-QAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred eeccc-cHHHHHHHhCCCce----eeecCCccceEEEeccCchHHHHHHHH---h-hheEeeccCCCCCEEEecCCCcch
Confidence 99998 89999999994332 455778888877666555444432110 0 011122334668899999999988
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 043190 931 RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTST 1010 (1492)
Q Consensus 931 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~ 1010 (1492)
+-++..+.+.+...... ..-+..|.++++.|+.+-+.++++.-..|..++||||++
T Consensus 577 E~t~~~i~~~l~ql~~~------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNI 632 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSA------------------------PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNI 632 (1042)
T ss_pred hHHHHHHHHHHHhhhcC------------------------CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccc
Confidence 88877765543221000 112567899999999999999999999999999999999
Q ss_pred cccccCCCCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCC
Q 043190 1011 LAWGVNLPAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEP 1082 (1492)
Q Consensus 1011 l~~Gvdip~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~ 1082 (1492)
++.++++|++.+||... +.|++..+ ..+++|.++..||.|||||.| +|.||.++++.. +...++..+
T Consensus 633 AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~a--y~~eml~st 707 (1042)
T KOG0924|consen 633 AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTEDA--YKNEMLPST 707 (1042)
T ss_pred hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---CcceeeehhhhH--HHhhcccCC
Confidence 99999999999999643 57888766 446788999999999999986 999999987633 334455444
Q ss_pred CceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCC
Q 043190 1083 FPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGC 1162 (1492)
Q Consensus 1083 ~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~ 1162 (1492)
.| .....+|.+.++-....| ++|+.+| .|. +....+.+.+++-.|-..|+
T Consensus 708 vP--EIqRTNl~nvVLlLkslg----V~dll~F---dFm---------------------D~Pped~~~~sly~Lw~LGA 757 (1042)
T KOG0924|consen 708 VP--EIQRTNLSNVVLLLKSLG----VDDLLKF---DFM---------------------DPPPEDNLLNSLYQLWTLGA 757 (1042)
T ss_pred Cc--hhhhcchhhHHHHHHhcC----hhhhhCC---CcC---------------------CCCHHHHHHHHHHHHHHhhc
Confidence 43 334555666665555554 3454433 221 12234567789999999999
Q ss_pred ceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhh
Q 043190 1163 VKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALS 1232 (1492)
Q Consensus 1163 i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~ 1232 (1492)
|...+ .+|++|+-|+.|+++|..+++++.+...+ +..++|.|+|.-+- ..+..|+.|.+.-..++
T Consensus 758 l~~~g---~LT~lG~~MvefpLDP~lsKmll~a~~~G-c~dEilsIvSmLSv-p~VF~rpker~eead~a 822 (1042)
T KOG0924|consen 758 LDNTG---QLTPLGRKMVEFPLDPPLSKMLLMAARMG-CSDEILSIVSMLSV-PAVFYRPKEREEEADAA 822 (1042)
T ss_pred cccCC---ccchhhHHhhhCCCCchHHHHHHHHhccC-cHHHHHHHHHHhcc-cceeeccccchhhhhhH
Confidence 96543 45999999999999999999998765544 45667776665433 55677877765544443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=336.10 Aligned_cols=332 Identities=20% Similarity=0.339 Sum_probs=253.7
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++.+||+..|+|-|.++|..++ +++|+++..|||+||++||.+|.+-. .+-+|+|+|..+|...+.+.+...
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~-----~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL-----EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc-----CCCEEEECchHHHHHHHHHHHHHc
Confidence 457888999999999999999999 78999999999999999999998865 579999999999999999887663
Q ss_pred hhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhH--hhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDG--ISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~--l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
|+.+..+.+..+.+.+. ....++++-+||++.. +++. ..-..+.++||||||+++ .+|..+
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~----L~~~~i~l~vIDEAHCiS-qWGhdF 150 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL----LKRLPISLVAIDEAHCIS-QWGHDF 150 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH----HHhCCCceEEechHHHHh-hcCCcc
Confidence 88888888876544321 1246999999998732 1111 113478899999999994 344444
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
..-..++..+....+ ++.++++|||-+. ..|+.+-|+.....++..+.......+++.... ....+
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~----------~~~~q- 218 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG----------EPSDQ- 218 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc----------cHHHH-
Confidence 444444444433343 7889999988765 578888888877544442222211111111100 01111
Q ss_pred HHHHHh--hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 907 AYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 907 ~~~~l~--~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
+..+. .....++.||||.||+.++.+|..|... +..++.||||
T Consensus 219 -~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----------------------------------g~~a~~YHaG 263 (590)
T COG0514 219 -LAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN----------------------------------GISAGAYHAG 263 (590)
T ss_pred -HHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC----------------------------------CCceEEecCC
Confidence 11333 2456678999999999999999988442 6789999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
|+.++|..++++|..++++|+|||.++++|||.|++++||| |+. +-++++|.|-+|||||.| .+..|+
T Consensus 264 l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~l------P~s~EsYyQE~GRAGRDG--~~a~ai 331 (590)
T COG0514 264 LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDL------PGSIESYYQETGRAGRDG--LPAEAI 331 (590)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecC------CCCHHHHHHHHhhccCCC--CcceEE
Confidence 99999999999999999999999999999999999999999 542 335999999999999998 899999
Q ss_pred EEecCCcHHHHHHhhcCCCc
Q 043190 1065 ILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~~~~p 1084 (1492)
+++.+.+......++....|
T Consensus 332 ll~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 332 LLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred EeeccccHHHHHHHHHhhcc
Confidence 99999998888888877665
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=346.26 Aligned_cols=424 Identities=19% Similarity=0.159 Sum_probs=310.5
Q ss_pred HhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch
Q 043190 698 HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777 (1492)
Q Consensus 698 ~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~ 777 (1492)
-.+++.++.++|+||||||||+...+.+++... ..++++.++.|+|--|..+++++.+.++..+|..|+... ..+.
T Consensus 59 ~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i---Rfe~ 134 (845)
T COG1643 59 LKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI---RFES 134 (845)
T ss_pred HHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE---Eeec
Confidence 333457899999999999999999999998765 346899999999999999999998888776666665432 2233
Q ss_pred hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 778 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
....++.|-++|.|.|...+. .+..|+.+++|||||+| +|....+.++..++.+....+.+.|+|.||||+ |
T Consensus 135 ~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DLKiIimSATl-d 206 (845)
T COG1643 135 KVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDLKLIIMSATL-D 206 (845)
T ss_pred cCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc-C
Confidence 334578999999997655544 46779999999999999 777788888888888777777789999999998 7
Q ss_pred hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH--hhcCCCCCeeEEecChHHHHHHHH
Q 043190 858 AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
.++++.+|+..+. +..+.|..|+++.+..-....+. ........+ ......|.+|||.+..++.+.++.
T Consensus 207 ~~rfs~~f~~apv----i~i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 207 AERFSAYFGNAPV----IEIEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred HHHHHHHcCCCCE----EEecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 8999999985432 34567778888776433222211 111111222 223557899999999999999998
Q ss_pred HHHH-HHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 043190 936 DLIQ-FAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014 (1492)
Q Consensus 936 ~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~G 1014 (1492)
.|.+ ... -...|.++||.|+.+++..+++.-..|+.+|++||+++++|
T Consensus 278 ~L~~~~l~-------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETS 326 (845)
T COG1643 278 WLEKAELG-------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETS 326 (845)
T ss_pred HHHhcccc-------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccc
Confidence 8854 100 13568999999999999999999999988999999999999
Q ss_pred cCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCcee
Q 043190 1015 VNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVE 1086 (1492)
Q Consensus 1015 vdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pie 1086 (1492)
++||++++||.+. +.|++..+- ..++|.++..||.|||||.+ +|.||.++++.+ |..+.....|
T Consensus 327 LTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~---~~~~~~~t~P-- 398 (845)
T COG1643 327 LTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED---FLAFPEFTLP-- 398 (845)
T ss_pred eeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH---HHhcccCCCh--
Confidence 9999999999764 468877652 24578999999999999985 999999998744 4455444333
Q ss_pred ecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceec
Q 043190 1087 SSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMT 1166 (1492)
Q Consensus 1087 s~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~ 1166 (1492)
.-+...|...++..-..|.- . +|. .++.++..-...+..++..|...|++..+
T Consensus 399 EIlrtdLs~~vL~l~~~G~~---~-----------------d~~-------~f~fld~P~~~~i~~A~~~L~~LGAld~~ 451 (845)
T COG1643 399 EILRTDLSGLVLQLKSLGIG---Q-----------------DIA-------PFPFLDPPPEAAIQAALTLLQELGALDDS 451 (845)
T ss_pred hhhhcchHHHHHHHHhcCCC---C-----------------Ccc-------cCccCCCCChHHHHHHHHHHHHcCCcCCC
Confidence 33444455444444344421 0 111 11111111234577899999999999766
Q ss_pred CCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCC
Q 043190 1167 EDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGA 1212 (1492)
Q Consensus 1167 ~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a 1212 (1492)
+. +|++|+.||.++++|+.+++...+-. ..+..+.+.+.|.-
T Consensus 452 g~---LT~lG~~ms~lpldprLA~mLl~a~~-~g~~~e~~~Ias~L 493 (845)
T COG1643 452 GK---LTPLGKQMSLLPLDPRLARMLLTAPE-GGCLGEAATIASML 493 (845)
T ss_pred CC---CCHHHHHHHhCCCChHHHHHHHhccc-cCcHHHHHHHHHhh
Confidence 54 69999999999999999999998765 34445555444443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=358.10 Aligned_cols=314 Identities=20% Similarity=0.286 Sum_probs=230.3
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.+...|+|+ |||+|.+|++.+++. +++.+++||||||||.+|+.|++..+.. +.+++|++||++||.|+++.
T Consensus 443 ~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 443 EFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHH
Confidence 355667886 999999999999742 3689999999999999999999988765 68999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCcc
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~ 826 (1492)
+.+.+... ++++..++|........ ..+++|+|+||. ++.+ ...+++++++||||+|+++.
T Consensus 520 f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~---~v~f~~L~llVIDEahrfgv---- 587 (926)
T TIGR00580 520 FKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQK---DVKFKDLGLLIIDEEQRFGV---- 587 (926)
T ss_pred HHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhC---CCCcccCCEEEeecccccch----
Confidence 99988765 88898898876533211 125799999995 2222 23478999999999997632
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHH-HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLA-DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
.... .++. ...++++++||||+.. ..+. .+.+..+..++...+..| .++...+.... ..
T Consensus 588 ~~~~---~L~~----~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----------~~ 647 (926)
T TIGR00580 588 KQKE---KLKE----LRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----------PE 647 (926)
T ss_pred hHHH---HHHh----cCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----------HH
Confidence 2222 2222 2457899999999643 3333 233444433443333222 23333222111 01
Q ss_pred hHHHHH-hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 906 PAYAAI-CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 906 ~~~~~l-~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
.....+ .....+++++||||+++.++.++..|.+.. .+..+..+||+
T Consensus 648 ~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~--------------------------------p~~~v~~lHG~ 695 (926)
T TIGR00580 648 LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV--------------------------------PEARIAIAHGQ 695 (926)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC--------------------------------CCCeEEEecCC
Confidence 111112 223457899999999999999887775431 14578999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
|++++|..+++.|++|+++|||||+++++|+|+|++++||. ++.+ .++.++|.||+||+||.| ..|.|+
T Consensus 696 m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~-----~~gls~l~Qr~GRvGR~g--~~g~ai 764 (926)
T TIGR00580 696 MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRGRVGRSK--KKAYAY 764 (926)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCC-----CCCHHHHHHHhcCCCCCC--CCeEEE
Confidence 99999999999999999999999999999999999999886 3322 124778999999999987 899999
Q ss_pred EEecCC
Q 043190 1065 ILVHEP 1070 (1492)
Q Consensus 1065 ~l~~~~ 1070 (1492)
+++.+.
T Consensus 765 ll~~~~ 770 (926)
T TIGR00580 765 LLYPHQ 770 (926)
T ss_pred EEECCc
Confidence 998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=305.36 Aligned_cols=335 Identities=19% Similarity=0.260 Sum_probs=240.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKA 745 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~ 745 (1492)
|...+++++- ||+.||-+|+.+||-++ .|+|++..|.||||||.+|++|+++.+... .+..+++++|||+
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkE 104 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKE 104 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHH
Confidence 5556777765 99999999999999999 788999999999999999999999977542 3678999999999
Q ss_pred HHHHHHHHHHHHhhhcc-CCEEEEEcCCCCcc---hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 746 IVRERMNDWKDRLVSQL-GKEMVEMTGDYTPD---LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 746 La~q~~~~~~~~~~~~~-g~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
||.|++..+.+...... .+++.-+..+.+.. .-....++|+|+||+++..++..... ..+..++++|+||||++.
T Consensus 105 L~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~-~~~~~l~~LVvDEADLll 183 (569)
T KOG0346|consen 105 LAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL-EYLDSLSFLVVDEADLLL 183 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc-hhhhheeeEEechhhhhh
Confidence 99999998876332221 23444444333322 22235789999999998877775332 568899999999999875
Q ss_pred CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccC--cEEEEeccCCccccc
Q 043190 822 AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVP--LEVHIQGYPGKFYCP 898 (1492)
Q Consensus 822 ~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~--l~~~~~~~~~~~~~~ 898 (1492)
+ +| |+.- |+.+...+++..|.++||||+.+ ...+...+--++ .+..+....-+.+ +...... +.
T Consensus 184 s-fG--Yeed---lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nP-viLkl~e~el~~~dqL~Qy~v~------cs 250 (569)
T KOG0346|consen 184 S-FG--YEED---LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNP-VILKLTEGELPNPDQLTQYQVK------CS 250 (569)
T ss_pred h-cc--cHHH---HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCC-eEEEeccccCCCcccceEEEEE------ec
Confidence 3 22 2222 22333455678899999999975 333444333333 3333333333322 2221111 11
Q ss_pred cccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccce
Q 043190 899 RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978 (1492)
Q Consensus 899 ~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 978 (1492)
....-..+|..++..--.+++|||+||.+.|..+-..|.+ .+...
T Consensus 251 -e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeq----------------------------------FGiks 295 (569)
T KOG0346|consen 251 -EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQ----------------------------------FGIKS 295 (569)
T ss_pred -cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHH----------------------------------hCcHh
Confidence 0010112333334444578999999999999888766633 25566
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecc-----------------------------------ccccccCCCCcEEE
Q 043190 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTS-----------------------------------TLAWGVNLPAHLVI 1023 (1492)
Q Consensus 979 ~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~-----------------------------------~l~~Gvdip~~~~V 1023 (1492)
++++|.|+..-|.-+++.|..|-.+++|||+ -.+||||+..+..|
T Consensus 296 ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~V 375 (569)
T KOG0346|consen 296 CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNV 375 (569)
T ss_pred hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeee
Confidence 7899999999999999999999999999998 25689999999999
Q ss_pred EecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1024 IKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1024 I~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++ +|+| ...|+||+||++|.+ ++|.++.|+.+.+..
T Consensus 376 lN------------FD~P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 376 LN------------FDFPETVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred ee------------cCCCCchHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 98 4555 889999999999987 999999999887644
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=349.87 Aligned_cols=319 Identities=22% Similarity=0.348 Sum_probs=219.6
Q ss_pred hhcCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.++|+ ||++|.++++.+... ..+.+++||||||||++|++|++..+.. +.+++|++||++||.|+++.+++
T Consensus 256 ~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 256 ASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred HhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHH
Confidence 334775 999999999998742 2489999999999999999999998764 78999999999999999999998
Q ss_pred HhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHH
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~ 829 (1492)
.+... |+++..++|+.....+ ....++|+|+||+.+.. ...+++++++||||+|.++... .
T Consensus 333 l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q----r 400 (681)
T PRK10917 333 LLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ----R 400 (681)
T ss_pred HHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH----H
Confidence 77665 8999999999874322 12258999999986532 2347899999999999874321 1
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCChHHHH-HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHH
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALANAGDLA-DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAY 908 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1492)
. .+.. ....+++++||||+.. ..++ ...+........-.+..+ .++...+... ......+
T Consensus 401 ~---~l~~----~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~~----------~~~~~~~ 461 (681)
T PRK10917 401 L---ALRE----KGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGR-KPITTVVIPD----------SRRDEVY 461 (681)
T ss_pred H---HHHh----cCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCC-CCcEEEEeCc----------ccHHHHH
Confidence 1 1111 1336789999999743 3332 222222222222112211 1222222110 0011222
Q ss_pred HHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHh-ccceEeecCCCC
Q 043190 909 AAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTL-QFGIGLHHAGLN 986 (1492)
Q Consensus 909 ~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~v~~~h~~l~ 986 (1492)
..+.. ...+++++|||+..++.+.+. +.. .++.. +.+.... +..++.+||+|+
T Consensus 462 ~~i~~~~~~g~q~~v~~~~ie~s~~l~--~~~---------------~~~~~--------~~L~~~~~~~~v~~lHG~m~ 516 (681)
T PRK10917 462 ERIREEIAKGRQAYVVCPLIEESEKLD--LQS---------------AEETY--------EELQEAFPELRVGLLHGRMK 516 (681)
T ss_pred HHHHHHHHcCCcEEEEEcccccccchh--HHH---------------HHHHH--------HHHHHHCCCCcEEEEeCCCC
Confidence 33322 246789999999765443210 000 00000 1111211 367999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+++|..+++.|++|+++|||||+++++|+|+|++++||. |+++. ++.+.+.||+||+||.| ..|.|+++
T Consensus 517 ~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GRvGR~g--~~g~~ill 585 (681)
T PRK10917 517 PAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGA--AQSYCVLL 585 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhcccCCC--CceEEEEE
Confidence 999999999999999999999999999999999999997 55432 25788999999999987 89999999
Q ss_pred ecCC
Q 043190 1067 VHEP 1070 (1492)
Q Consensus 1067 ~~~~ 1070 (1492)
++.+
T Consensus 586 ~~~~ 589 (681)
T PRK10917 586 YKDP 589 (681)
T ss_pred ECCC
Confidence 9643
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=347.03 Aligned_cols=319 Identities=21% Similarity=0.333 Sum_probs=217.6
Q ss_pred cCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 684 YNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
++| +||+.|.+|++.++.. ..+.+++||||||||.+|++|++..+.. +.+++|++||++||.|+++.+.+.+
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHHh
Confidence 378 5999999999998732 1378999999999999999999998764 7899999999999999999999877
Q ss_pred hhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVI 831 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i 831 (1492)
... |+++..++|+.....+ ...+++|+|+||+.+.. ...+++++++||||+|.++... ...+
T Consensus 309 ~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q---r~~l 377 (630)
T TIGR00643 309 APL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ---RKKL 377 (630)
T ss_pred ccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH---HHHH
Confidence 665 8999999998765432 12357999999986531 2336899999999999874321 1111
Q ss_pred HHHHHHhhhccCCceEEEEEcCCCCChHHHHH-HhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHH
Q 043190 832 VSRMRYISSQTERAVRFIGLSTALANAGDLAD-WLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA 910 (1492)
Q Consensus 832 ~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~-~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1492)
.. ... ....+++++||||+.. ..++. ..+.-........+..+ .++........ .....+..
T Consensus 378 ~~----~~~-~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~----------~~~~~~~~ 440 (630)
T TIGR00643 378 RE----KGQ-GGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD----------EKDIVYEF 440 (630)
T ss_pred HH----hcc-cCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc----------hHHHHHHH
Confidence 11 110 0125789999999744 22222 11211111111111111 12222221100 01223333
Q ss_pred Hhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH-HhccceEeecCCCCHH
Q 043190 911 ICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ-TLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 911 l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~h~~l~~~ 988 (1492)
+... ..+++++|||+..++.+.+...- .+++. +.+.. ..+..++.+||+|+++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~-----------------a~~~~--------~~L~~~~~~~~v~~lHG~m~~~ 495 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKA-----------------AEALY--------ERLKKAFPKYNVGLLHGRMKSD 495 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHH-----------------HHHHH--------HHHHhhCCCCcEEEEeCCCCHH
Confidence 3332 45789999999875443220000 00000 01111 1256799999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+++|||||+++++|||+|++++||. |+++. ++.+.+.||+||+||.| ..|.|++++.
T Consensus 496 eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GRvGR~g--~~g~~il~~~ 564 (630)
T TIGR00643 496 EKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGRVGRGD--HQSYCLLVYK 564 (630)
T ss_pred HHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhhcccCC--CCcEEEEEEC
Confidence 9999999999999999999999999999999999886 44432 35789999999999987 8999999984
Q ss_pred C
Q 043190 1069 E 1069 (1492)
Q Consensus 1069 ~ 1069 (1492)
.
T Consensus 565 ~ 565 (630)
T TIGR00643 565 N 565 (630)
T ss_pred C
Confidence 3
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=335.46 Aligned_cols=397 Identities=15% Similarity=0.119 Sum_probs=250.8
Q ss_pred HHHHHHHHhhhcCCCcEEEecCCCCCchHHHHH---------HHHHHh---c-cCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAEL---------AMLHLF---N-TQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 691 ~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l---------~il~~l---~-~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
.+|.++++.+. .++++++.|+||||||.+... +.+..+ . ...++++++++|||+||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~-~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWI-SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHH-hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 58999999988 789999999999999998443 233322 2 223579999999999999999988776
Q ss_pred hhh--ccCCEEEEEcCCCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 758 LVS--QLGKEMVEMTGDYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 758 ~~~--~~g~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
++. ..|..+....|+.... .......+|+|+|++. ....++++++|||||||.+... +.. ++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dl---lL~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDI---IIA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhH---HHH
Confidence 543 2356677788877532 1122367999999752 1123789999999999976432 223 333
Q ss_pred HHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccc--cccccccChhHHH
Q 043190 834 RMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFY--CPRMNSMNKPAYA 909 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~ 909 (1492)
.++... ....|+++||||++. .+.+.+|++... .+... .+ ..+++........... .............
T Consensus 313 llk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~ 385 (675)
T PHA02653 313 VARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVT 385 (675)
T ss_pred HHHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHHHH
Confidence 333221 123489999999974 567788886332 22222 22 2344443321110000 0000000111222
Q ss_pred HHhhc--CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 910 AICTH--SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 910 ~l~~~--~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
.+... ..++++||||+++++|+.++..|.+.. .+..+..+||+|++
T Consensus 386 ~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~--------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 386 ALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL--------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc--------------------------------CCceEEeccCCcCH
Confidence 23222 245789999999999999988774321 13568999999997
Q ss_pred HHHHHHHHHH-hcCCceEEEeccccccccCCCCcEEEEecceeeeCc--cCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 988 KDRSLVEELF-ANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGK--TKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 988 ~~R~~v~~~f-~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~--~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
. +++++.| ++|+.+|||||+++++|+|+|++++||+....+.+. .+....+|.++|.||+|||||. .+|.|+
T Consensus 434 ~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~ 508 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYV 508 (675)
T ss_pred H--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEE
Confidence 5 4566676 789999999999999999999999999854322222 1222346899999999999997 489999
Q ss_pred EEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHH
Q 043190 1065 ILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSS 1144 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~ 1144 (1492)
.++++.+.. |+...-.+.|...++..-..|. ...++. | +++++
T Consensus 509 rLyt~~~~~----------pI~ri~~~~L~~~vL~lk~~g~-~~~~~~--~------------------ldpP~------ 551 (675)
T PHA02653 509 YFYDLDLLK----------PIKRIDSEFLHNYILYAKYFNL-TLPEDL--F------------------VIPSN------ 551 (675)
T ss_pred EEECHHHhH----------HHHHHhHHHHHHHHHHHHHcCC-CCcccc--c------------------CCCCC------
Confidence 999876521 1111111223333333333332 211110 1 12211
Q ss_pred HHHHHHHHHHHHhHHCCCceecCCccccccc--hhhhhhccccHHHHHHHH
Q 043190 1145 YLSRLVQNTFEDLEDSGCVKMTEDTVEPTML--GTIASQYYLSYVTVSMFG 1193 (1492)
Q Consensus 1145 ~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~l--G~~~s~~~i~~~T~~~f~ 1193 (1492)
.+.++.|++.|...|+. ++ .+|.+ |+.++.. +.++.++
T Consensus 552 --~~~l~~A~~~L~~lga~--~~---~l~~l~~~~~~~~~----~~~k~~~ 591 (675)
T PHA02653 552 --LDRLRKTEEYIDSFNIS--IE---KWYEILSNYYVNML----EYAKIYV 591 (675)
T ss_pred --HHHHHHHHHHHHHcCCC--ch---hhhhhhccccHHHH----HHhHHHh
Confidence 24578899999999976 22 46877 8777765 5555554
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=337.42 Aligned_cols=328 Identities=21% Similarity=0.281 Sum_probs=245.6
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+||..++|||.||||+++ +|+++|..|-||||||++|.+|+++++..+ .|+.+++++|||+||.|+.+.+..
T Consensus 383 l~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k- 460 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK- 460 (997)
T ss_pred hcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH-
Confidence 389999999999999999 899999999999999999999999887653 478999999999999999998877
Q ss_pred hhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcc-cCccccCcccEEEEecccccCC-CCccHHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNW-HSRNYVKKVGLMILDEIHLLGA-ERGPILEVIV 832 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~-~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~ 832 (1492)
|.+.+|+++++..|+...... ...++.|+||||+++.+++... ..-..+.++.++|+||||.+.+ .+.|+...|+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii 540 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRIL 540 (997)
T ss_pred HHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHH
Confidence 555579999999998764432 2246899999999976555443 3344566777999999997754 5777766677
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 833 SRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
..+ ++..|.+++|||++. .+.++.-.--.+..+.......-.-.+...+. .+.........+...+
T Consensus 541 ~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~------V~~~e~eKf~kL~eLl 607 (997)
T KOG0334|consen 541 QNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVR------VCAIENEKFLKLLELL 607 (997)
T ss_pred hhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEE------EecCchHHHHHHHHHH
Confidence 665 457899999999987 34444433222222111100000000011000 0000111111234444
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
......+++||||.+...|..+...|.+. ++.+..+||+.++.+|.
T Consensus 608 ~e~~e~~~tiiFv~~qe~~d~l~~~L~~a----------------------------------g~~~~slHGgv~q~dR~ 653 (997)
T KOG0334|consen 608 GERYEDGKTIIFVDKQEKADALLRDLQKA----------------------------------GYNCDSLHGGVDQHDRS 653 (997)
T ss_pred HHHhhcCCEEEEEcCchHHHHHHHHHHhc----------------------------------CcchhhhcCCCchHHHH
Confidence 55566899999999999999998888432 45556689999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.+++.|++|.+++||||+++++|+|++.+.+||+ ||-+.+ ..+|+||+||+||+| +.|.|+.|..+.+
T Consensus 654 sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pnh------~edyvhR~gRTgrag--rkg~AvtFi~p~q 721 (997)
T KOG0334|consen 654 STIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPNH------YEDYVHRVGRTGRAG--RKGAAVTFITPDQ 721 (997)
T ss_pred hHHHHHhccCceEEEehhhhhcccccccceEEEE----cccchh------HHHHHHHhcccccCC--ccceeEEEeChHH
Confidence 9999999999999999999999999999999998 443332 678999999999999 8999999999844
Q ss_pred H
Q 043190 1072 K 1072 (1492)
Q Consensus 1072 ~ 1072 (1492)
.
T Consensus 722 ~ 722 (997)
T KOG0334|consen 722 L 722 (997)
T ss_pred h
Confidence 3
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=304.47 Aligned_cols=395 Identities=20% Similarity=0.254 Sum_probs=267.9
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc--CCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ--GHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 83 (1492)
++.|+|+||||+.|++++|+.|+++ .+.-+.|||||+.|++..... ..+.+.+..++.......-+. .+|
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a~------lV~y~~RPVplErHlvf~~~e--~eK~~ii~~L~k~E~~~~sskg~rGQ 442 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGAK------LVLYDERPVPLERHLVFARNE--SEKWDIIARLVKREFSTESSKGYRGQ 442 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCCe------eEeecCCCCChhHeeeeecCc--hHHHHHHHHHHHHHHhhhhccCcCCc
Confidence 3689999999999999999999998 366689999999998876532 234444455444333322222 479
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||++||+.|..+|..|.... ...+.+||||+..+|+.||..
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG-------------------------------------~~a~pYHaGL~y~eRk~vE~~ 485 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKG-------------------------------------LKAAPYHAGLPYKERKSVERA 485 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCC-------------------------------------cccccccCCCcHHHHHHHHHH
Confidence 9999999999999999886532 127789999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH-------
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL------- 236 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~------- 236 (1492)
|.++.+.++|+|..|+.|||+||..||+.+.-.... =.+...|.||.||||||+|+..|.+++++.+...
T Consensus 486 F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~---WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~ 562 (830)
T COG1202 486 FAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIE---WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEE 562 (830)
T ss_pred HhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccc---cCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccc
Confidence 999999999999999999999999999875544321 1255669999999999999999999999976532
Q ss_pred ---HHHHHHhcC-CCccccchhH-hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 237 ---AYYLRLLTS-QLPIESQFIS-SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 237 ---~~~~~~~~~-~~~ies~l~~-~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.-.+++.+ ++|+.-...+ .-.+.++| ..|...+..+.-+. |+...|-..+
T Consensus 563 TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v------------~~~~~g~~~~---------- 618 (830)
T COG1202 563 TEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERV------------NSLMLGAAFD---------- 618 (830)
T ss_pred cHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhc------------ChhhccccCC----------
Confidence 122334433 3455444433 23344444 23333333322211 2222232211
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccch
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRD 391 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~ 391 (1492)
.+.++..|++.|||..+ ++.+.+|+.|+++|.+++.|.++..+.+.+-..++. +.+++.-.=|++.++..
T Consensus 619 -----~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~~p---l~i~~~l~pfE~ayls~ 688 (830)
T COG1202 619 -----PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASMDP---LRIAAELEPFENAYLSG 688 (830)
T ss_pred -----HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHHHHHhhhccCCh---HhHhhccccccccccCh
Confidence 23789999999999854 567999999999999999999999999886555444 34444444465555554
Q ss_pred hHHHHHHHHHhcCCcccccC-----------CC----CChhHHHHHHHHHHHcC-------------------CCCC---
Q 043190 392 EEQNELETLVQTLCPVEVKG-----------GP----SNKHGKISILIQLYISR-------------------GWID--- 434 (1492)
Q Consensus 392 ~e~~~l~~l~~~~~~~~~~~-----------~~----~~~~~K~~~Llqa~i~~-------------------~~~~--- 434 (1492)
.-+.+++....-.+|..+-. .+ .....|...+.+++++. +.++
T Consensus 689 ~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~ 768 (830)
T COG1202 689 FLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKD 768 (830)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 44444443332211111000 00 01123444444444442 1111
Q ss_pred ----------Cch---hHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcC
Q 043190 435 ----------TFS---LVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQ 482 (1492)
Q Consensus 435 ----------~~~---l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~ 482 (1492)
.|. ..+|..+-++++.|++.|.-.||..++--..+..+..+.+-++.+
T Consensus 769 p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 769 PSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcC
Confidence 233 349999999999999999999999888877778888888776543
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=355.55 Aligned_cols=315 Identities=19% Similarity=0.308 Sum_probs=226.8
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.+.+-|+| .||++|.+|++.++.. .++++++||||+|||.+|+.+++..+.. +.++++++||++||.|+++.
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHH
Confidence 34455688 5999999999998842 2799999999999999999888877653 78999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCcc
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~ 826 (1492)
|.+.+... ++++..++|..+...+. ..+.+|+|+||+.+ +. ...+++++++||||+|+++..
T Consensus 669 f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEahrfG~~--- 737 (1147)
T PRK10689 669 FRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEHRFGVR--- 737 (1147)
T ss_pred HHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechhhcchh---
Confidence 99877765 78888888866543221 13679999999733 22 223678999999999987421
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
. ..+++ ....+.+++++|||+.. ...++. .+..+...+...+..+ .++......+.. ...
T Consensus 738 -~---~e~lk----~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~r-~~v~~~~~~~~~-------~~~-- 798 (1147)
T PRK10689 738 -H---KERIK----AMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPARR-LAVKTFVREYDS-------LVV-- 798 (1147)
T ss_pred -H---HHHHH----hcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCCC-CCceEEEEecCc-------HHH--
Confidence 1 12222 23457899999999754 222222 2333333333222222 233322221100 000
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
....+.....+++++||||+++.++.++..|.+.. .+.++..+||+|
T Consensus 799 -k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~--------------------------------p~~~v~~lHG~m 845 (1147)
T PRK10689 799 -REAILREILRGGQVYYLYNDVENIQKAAERLAELV--------------------------------PEARIAIGHGQM 845 (1147)
T ss_pred -HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC--------------------------------CCCcEEEEeCCC
Confidence 11122233456899999999999999888775432 145789999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|+++|||||+++++|+|+|++++||. .++ ..+...+|.||+||+||.| ..|.|++
T Consensus 846 ~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~a-----d~fglaq~~Qr~GRvGR~g--~~g~a~l 914 (1147)
T PRK10689 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERA-----DHFGLAQLHQLRGRVGRSH--HQAYAWL 914 (1147)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecC-----CCCCHHHHHHHhhccCCCC--CceEEEE
Confidence 9999999999999999999999999999999999999884 111 1235678999999999987 8999999
Q ss_pred EecCC
Q 043190 1066 LVHEP 1070 (1492)
Q Consensus 1066 l~~~~ 1070 (1492)
++..+
T Consensus 915 l~~~~ 919 (1147)
T PRK10689 915 LTPHP 919 (1147)
T ss_pred EeCCC
Confidence 98654
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.53 Aligned_cols=331 Identities=23% Similarity=0.313 Sum_probs=235.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
+|..|+|+|.+|++.++ ..++++.|||||||||++|.+|++..+... .+-+++|+.|+|+||.|++.++.+ +
T Consensus 155 ~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k-~ 232 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK-Y 232 (593)
T ss_pred CCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh-c
Confidence 89999999999999998 789999999999999999999999988653 246899999999999999999877 4
Q ss_pred h--hccCCEEEEEcCCCCcch----hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC--CccHHHH
Q 043190 759 V--SQLGKEMVEMTGDYTPDL----MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--RGPILEV 830 (1492)
Q Consensus 759 ~--~~~g~~v~~~~g~~~~~~----~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--~g~~~~~ 830 (1492)
. ...+.++........... .....++|+++||-++..++........++.+.++|+||++++.+. +..++..
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 3 222444444444322221 1223679999999998777776443356889999999999988543 2222222
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcc-ccccccccChhHHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF-YCPRMNSMNKPAYA 909 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 909 (1492)
+++.. ..+..++-++|||.+ ..+.+|...............++..... ..... ++. ....+.....
T Consensus 313 I~sac------~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~~----V~QelvF~g-se~~K~lA~r 379 (593)
T KOG0344|consen 313 IYSAC------QSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANET----VDQELVFCG-SEKGKLLALR 379 (593)
T ss_pred HHHHh------cCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhhh----hhhhheeee-cchhHHHHHH
Confidence 33222 236788889999975 4666676543322111111111111000 00000 111 1111112223
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+....-..|+|||+.+.+.|..+...|. .+-+..|.++||..++.+
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~---------------------------------~~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELE---------------------------------IYDNINVDVIHGERSQKQ 426 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhh---------------------------------hccCcceeeEecccchhH
Confidence 33334456799999999999998887662 112567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..++++|+.|++.||+||+++++|+|+.+++.||+ ||- +-+..+|+||+||+||+| +.|.||.|+++
T Consensus 427 rde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~------p~s~~syihrIGRtgRag--~~g~Aitfytd 494 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDF------PQSDLSYIHRIGRTGRAG--RSGKAITFYTD 494 (593)
T ss_pred HHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCC------CchhHHHHHHhhccCCCC--CCcceEEEecc
Confidence 999999999999999999999999999999999998 442 223679999999999998 99999999998
Q ss_pred CcHHHH
Q 043190 1070 PKKSFY 1075 (1492)
Q Consensus 1070 ~~~~~~ 1075 (1492)
.+....
T Consensus 495 ~d~~~i 500 (593)
T KOG0344|consen 495 QDMPRI 500 (593)
T ss_pred ccchhh
Confidence 665443
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=340.45 Aligned_cols=345 Identities=19% Similarity=0.263 Sum_probs=262.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc-C
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL-G 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~-g 763 (1492)
|+..|+++|.+|+..+. +|+|+||+.|||||||.+|++||++.+.+.+..++||+.||+|||+.+.+++++...... +
T Consensus 67 g~~~lY~HQ~~A~~~~~-~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 67 GIERLYSHQVDALRLIR-EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred ccccccHHHHHHHHHHH-CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 77779999999999998 789999999999999999999999999988888999999999999999999998776663 3
Q ss_pred CEEEEEcCCCCcchhc---cCCCcEEEECchhhhH-hhhcccC-ccccCcccEEEEecccccCCCCccHHHHHHHHHHHh
Q 043190 764 KEMVEMTGDYTPDLMA---LLSADIIISTPEKWDG-ISRNWHS-RNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI 838 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~-l~~~~~~-~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~ 838 (1492)
+.+..++||+....+. ...++|++|||.+|.. +++.... ...++++++||+||+|.+..-+|..+..++.|++.+
T Consensus 146 v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 146 VTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred ceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 8889999999887763 5689999999999987 4554333 334678999999999999888999999999999999
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc-cccChhHHHHHh--hcC
Q 043190 839 SSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM-NSMNKPAYAAIC--THS 915 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~~~ 915 (1492)
....+.++++|++|||+.|+.+++.-+........ +..+..|-.....+...+........ ..........+. ...
T Consensus 226 ~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~ 304 (851)
T COG1205 226 LRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVR 304 (851)
T ss_pred HhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHH
Confidence 88888899999999999998877765544433321 22233333333333322211111111 000011111111 224
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.+-++|+|+.+++.++.++........... ..+...+..|+|++..++|..++.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~--------------------------~~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREG--------------------------GKLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcc--------------------------hhhhhheeeccccCCHHHHHHHHH
Confidence 678999999999999988754433321110 112356899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccC-CHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF-PITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~-~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
.|++|++.++++|++++-|+|+-++..||... ++. +..+++||.|||||.+ ..+..++....
T Consensus 359 ~~~~g~~~~~~st~AlelgidiG~ldavi~~g----------~P~~s~~~~~Q~~GRaGR~~--~~~l~~~v~~~ 421 (851)
T COG1205 359 EFKEGELLGVIATNALELGIDIGSLDAVIAYG----------YPGVSVLSFRQRAGRAGRRG--QESLVLVVLRS 421 (851)
T ss_pred HHhcCCccEEecchhhhhceeehhhhhHhhcC----------CCCchHHHHHHhhhhccCCC--CCceEEEEeCC
Confidence 99999999999999999999999999998711 344 6789999999999987 55555555543
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=309.95 Aligned_cols=330 Identities=18% Similarity=0.261 Sum_probs=249.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+|..|+++|..|||.++ .+.++||.|..|+|||++|-..+++.+... ...+++|++|||++|.|+.+.+......+.|
T Consensus 44 ~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred cccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 89999999999999998 889999999999999999998888876543 4678999999999999999998885555668
Q ss_pred CEEEEEcCCCCc--chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTP--DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~--~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~~~i~~~l~~~~ 839 (1492)
.+|..+.|++.. +...+++++|+|+|||++..|... .....++++++|+||||.|.+ .+...+..|+..
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s----- 195 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS----- 195 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh-----
Confidence 999999998764 445567899999999999888876 344578999999999997643 344455555544
Q ss_pred hccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccccccccccChhHHHHHhhcCC
Q 043190 840 SQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSP 916 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 916 (1492)
++...|++++|||-|. ...++.++.-+ .++.+..... -..+...+...+..........++...+..+...-+
T Consensus 196 --lP~~rQv~a~SATYp~nLdn~Lsk~mrdp--~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ip 271 (980)
T KOG4284|consen 196 --LPQIRQVAAFSATYPRNLDNLLSKFMRDP--ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP 271 (980)
T ss_pred --cchhheeeEEeccCchhHHHHHHHHhccc--ceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCc
Confidence 4567899999999876 34466666433 2333332211 112222222211111111111111222333444567
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
-.+.||||+....|+-++..|. ..++.+.++.|.|++.+|..+++.
T Consensus 272 y~QAlVF~~~~sra~~~a~~L~----------------------------------ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 272 YVQALVFCDQISRAEPIATHLK----------------------------------SSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred hHHHHhhhhhhhhhhHHHHHhh----------------------------------ccCCCeEEeccccchhHHHHHHHH
Confidence 7789999999999999887773 237789999999999999999999
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
++.-..+|||+|+..+||||-|.+++||+ .|+ +....+|+||+|||||-| ..|.++.++...+.
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~------p~d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVN----IDA------PADEETYFHRIGRAGRFG--AHGAAVTLLEDERE 381 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEe----cCC------CcchHHHHHHhhhccccc--ccceeEEEeccchh
Confidence 99999999999999999999999999998 221 223679999999999976 99999999987654
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=290.78 Aligned_cols=340 Identities=17% Similarity=0.257 Sum_probs=251.8
Q ss_pred cccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHH
Q 043190 673 TALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 673 ~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q 749 (1492)
-.|+.++++.+| ||+.|+.+|+.|+..+. .|.|+++.+++|+|||.++..++++.+... ....+++++|+|+||.|
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~q 109 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQ 109 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHH
Confidence 346667788887 99999999999999988 789999999999999999999999987532 35689999999999999
Q ss_pred HHHHHHHHhhhccCCEEEEEcCCCCcc--hhc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 750 RMNDWKDRLVSQLGKEMVEMTGDYTPD--LMA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 750 ~~~~~~~~~~~~~g~~v~~~~g~~~~~--~~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
....... ++...+.++..+.|+.... ... ...++|+++||++...++... ....+.++++|+||++.+.+ ++
T Consensus 110 i~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--~l~~~~iKmfvlDEaDEmLs~gf 186 (397)
T KOG0327|consen 110 IQKVVRA-LGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--SLSTDGIKMFVLDEADEMLSRGF 186 (397)
T ss_pred HHHHHHh-hhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--cccccceeEEeecchHhhhccch
Confidence 9955544 7777788888777765432 222 235799999999988888763 44467799999999997643 55
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
...+..+... .+.+.|++++|||.|. ..++++-+.-.+..+..-... +. ..+.. .++.......
T Consensus 187 kdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-----lt--l~gik-q~~i~v~k~~ 251 (397)
T KOG0327|consen 187 KDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-----LT--LEGIK-QFYINVEKEE 251 (397)
T ss_pred HHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-----hh--hhhee-eeeeeccccc
Confidence 5555555544 4568899999999986 455555444333222211111 00 11111 1111111111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
+-.....+.. ...+.+|||||++.+..+...|.. .++.+...|+
T Consensus 252 k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~----------------------------------~~~~~s~~~~ 295 (397)
T KOG0327|consen 252 KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA----------------------------------HGFTVSAIHG 295 (397)
T ss_pred cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh----------------------------------CCceEEEeec
Confidence 1122222222 567899999999999998877722 3678899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
.|.+.+|..+.+.|+.|..+|||+|+.+++|+|+..+..||+ |+.+. ...+|+||+||+||.| .+|.+
T Consensus 296 d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g--rkg~~ 363 (397)
T KOG0327|consen 296 DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG--RKGVA 363 (397)
T ss_pred ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC--CCcee
Confidence 999999999999999999999999999999999999999998 44322 2789999999999977 99999
Q ss_pred EEEecCCcHHHHHHhh
Q 043190 1064 VILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l 1079 (1492)
+.++.+.+...+++..
T Consensus 364 in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 364 INFVTEEDVRDLKDIE 379 (397)
T ss_pred eeeehHhhHHHHHhHH
Confidence 9999988776655443
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-31 Score=322.71 Aligned_cols=326 Identities=16% Similarity=0.157 Sum_probs=206.8
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcCCC-cEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
.|..+.||+ |+|||.++++.++ .|+ ++++++|||||||.++..+++...... ...+++|++|+|+||.|+++.+.+
T Consensus 7 ff~~~~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 7 WYQGLHGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred HHHHHhCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH
Confidence 344555998 9999999999998 555 788899999999997655444322211 234667788999999999999887
Q ss_pred Hhhhc----------------------cCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhH-hhhccc---------
Q 043190 757 RLVSQ----------------------LGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDG-ISRNWH--------- 801 (1492)
Q Consensus 757 ~~~~~----------------------~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~-l~~~~~--------- 801 (1492)
..... .++++..+.|+...+... ..+++|+|+|++.+.. .+.+..
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 44322 137788889987654322 2467999999754421 110000
Q ss_pred CccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc
Q 043190 802 SRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR 880 (1492)
Q Consensus 802 ~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r 880 (1492)
....+++++++|+|||| +...+...++.+++.+.. .....+.|+++||||++. ..++...+...+.. +.......
T Consensus 165 ~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~-i~V~~~~l 240 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK-HPVLKKRL 240 (844)
T ss_pred hhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCce-eecccccc
Confidence 01136889999999999 544555555555554210 001123699999999975 33444444333221 11111000
Q ss_pred ccCcEEEEeccCCccccccccccChhHHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHH
Q 043190 881 PVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDL 958 (1492)
Q Consensus 881 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 958 (1492)
...-...+..... ... .......+ .....++++||||||++.|+.++..|.+
T Consensus 241 ~a~ki~q~v~v~~------e~K-l~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~------------------- 294 (844)
T TIGR02621 241 AAKKIVKLVPPSD------EKF-LSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK------------------- 294 (844)
T ss_pred cccceEEEEecCh------HHH-HHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh-------------------
Confidence 0000011100000 000 00111111 1123567899999999999999988743
Q ss_pred HHHHhhcCcHHHHHHhccceEeecCCCCHHHHH-----HHHHHHhc----CC-------ceEEEeccccccccCCCCcEE
Q 043190 959 QMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS-----LVEELFAN----NK-------IQVLVCTSTLAWGVNLPAHLV 1022 (1492)
Q Consensus 959 ~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~-----~v~~~f~~----g~-------~~vLvaT~~l~~Gvdip~~~~ 1022 (1492)
.++..+||+|++.+|. .+++.|++ |. .+|||||+++++|+|++. .+
T Consensus 295 -----------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~ 356 (844)
T TIGR02621 295 -----------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DH 356 (844)
T ss_pred -----------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ce
Confidence 1337899999999999 78999987 54 689999999999999998 55
Q ss_pred EEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 1023 IIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 1023 VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
||+ ...|.++|+||+||+||.|....+.++++
T Consensus 357 VI~------------d~aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 357 LVC------------DLAPFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred EEE------------CCCCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 554 23578999999999999884333333333
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=316.71 Aligned_cols=303 Identities=19% Similarity=0.183 Sum_probs=197.2
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc----------
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP---------- 775 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~---------- 775 (1492)
+++++||||||||++|+++++..+....+.+++|++|+++|+.|+++++...|+. +++.++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCch
Confidence 4799999999999999999999876666789999999999999999999887643 34444442210
Q ss_pred -----------chhccCCCcEEEECchhhhHhhhcccC--ccccC--cccEEEEecccccCCCCccHHHHHHHHHHHhhh
Q 043190 776 -----------DLMALLSADIIISTPEKWDGISRNWHS--RNYVK--KVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 776 -----------~~~~~~~~~Iiv~Tpe~l~~l~~~~~~--~~~l~--~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~ 840 (1492)
+......++|+|+||+++...+..... ...+. ..+++|+||+|.+.+.....+..++..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~---- 152 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK---- 152 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH----
Confidence 000112468999999997655443111 11111 23799999999886532222333333332
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccc--cccccccChhHHH-HHhhcCCC
Q 043190 841 QTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFY--CPRMNSMNKPAYA-AICTHSPT 917 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~~ 917 (1492)
..+.|+++||||+| +.+.+++...............+.. ......+ ............. .+.....+
T Consensus 153 --~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 222 (358)
T TIGR01587 153 --DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEER------RFERHRFIKIESDKVGEISSLERLLEFIKKG 222 (358)
T ss_pred --HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCcccc------ccccccceeeccccccCHHHHHHHHHHhhCC
Confidence 23678999999997 4455554321110000000000000 0000000 0000001111222 22333457
Q ss_pred CCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH----
Q 043190 918 KPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV---- 993 (1492)
Q Consensus 918 ~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v---- 993 (1492)
+++||||+|++.|+.++..|.+.. ....+..+||++++.+|..+
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~--------------------------------~~~~~~~~h~~~~~~~r~~~~~~~ 270 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENA--------------------------------PEEEIMLLHSRFTEKDRAKKEAEL 270 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhc--------------------------------CCCeEEEEECCCCHHHHHHHHHHH
Confidence 899999999999999998885531 12358999999999999764
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC--CceEEEEEecCCc
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD--QHGKAVILVHEPK 1071 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~--~~G~~i~l~~~~~ 1071 (1492)
++.|++|+.+|||||+++++|+|+|. .+||. .+.|..+|+||+||+||.|.. ..|.++++...++
T Consensus 271 ~~~f~~~~~~ilvaT~~~~~GiDi~~-~~vi~------------~~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 271 LEEMKKNEKFVIVATQVIEASLDISA-DVMIT------------ELAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHhcCCCCeEEEECcchhceeccCC-CEEEE------------cCCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 88999999999999999999999974 55554 455789999999999998743 3358888876554
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=289.89 Aligned_cols=336 Identities=21% Similarity=0.269 Sum_probs=229.8
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.-+++.+|......++ .+|++++.|||-|||+++.+-+...+...++ ++|+++||+.|+.|.+..+.+.++-. ...
T Consensus 13 ~ie~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIP-EDE 88 (542)
T ss_pred cccHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCC-hhh
Confidence 3468899999988887 3599999999999999999999988888655 99999999999999999988865432 446
Q ss_pred EEEEcCCCCcchhc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC
Q 043190 766 MVEMTGDYTPDLMA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 766 v~~~~g~~~~~~~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
+..++|...++.+. ..+.+|+|+||+.+..=+.. +...+.++.++|+||||+--. +..|-.+....- ...
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvG--nyAYv~Va~~y~----~~~ 160 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVG--NYAYVFVAKEYL----RSA 160 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccC--cchHHHHHHHHH----Hhc
Confidence 88999999887554 35789999999987443333 344588999999999997522 223333333222 134
Q ss_pred CceEEEEEcCCCCC----hHHHHHHhcCCcceeEe-cCCCccccCc--EEEEec--------------------------
Q 043190 844 RAVRFIGLSTALAN----AGDLADWLGVGEIGLFN-FKPSVRPVPL--EVHIQG-------------------------- 890 (1492)
Q Consensus 844 ~~~~ii~lSATl~~----~~~~~~~l~~~~~~~~~-~~~~~r~~~l--~~~~~~-------------------------- 890 (1492)
.+++++|||||+++ ..++.+-||+....+-. .+++.+|.-- ++....
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999987 34566667665432211 1222222110 000000
Q ss_pred -------cC---Cccccccc----------c-------------------------------------------c-cCh-
Q 043190 891 -------YP---GKFYCPRM----------N-------------------------------------------S-MNK- 905 (1492)
Q Consensus 891 -------~~---~~~~~~~~----------~-------------------------------------------~-~~~- 905 (1492)
.. ........ . . ..+
T Consensus 241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 241 ELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred HcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHH
Confidence 00 00000000 0 0 000
Q ss_pred -----------hH--------------------HHHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccC
Q 043190 906 -----------PA--------------------YAAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL 951 (1492)
Q Consensus 906 -----------~~--------------------~~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~ 951 (1492)
.. ...+ ....++.++|||++-|..++.++..|.+...... ..|.
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~--~rFi 398 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR--VRFI 398 (542)
T ss_pred HHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce--eEEe
Confidence 00 0000 0113456899999999999999888865432110 1121
Q ss_pred CCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeee
Q 043190 952 GMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYD 1031 (1492)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~ 1031 (1492)
|-.-.-+..||++.++.++++.|+.|+.+|||||+++++|+|+|.+++||. |+
T Consensus 399 -----------------------GQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YE 451 (542)
T COG1111 399 -----------------------GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YE 451 (542)
T ss_pred -----------------------eccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE----ec
Confidence 111223347999999999999999999999999999999999999999996 76
Q ss_pred CccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1032 GKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1032 ~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+-. |...++||.||+||. +.|.+++|+.++.
T Consensus 452 pvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gt 482 (542)
T COG1111 452 PVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGT 482 (542)
T ss_pred CCc------HHHHHHHhhCccccC---CCCeEEEEEecCc
Confidence 532 466899999999995 7999999998873
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=300.83 Aligned_cols=300 Identities=22% Similarity=0.264 Sum_probs=196.5
Q ss_pred HHHHHHHhhhcCCC-cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc---cCCEEE
Q 043190 692 IQTQIFHILYHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ---LGKEMV 767 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~---~g~~v~ 767 (1492)
+|.++++++++++. +++++||||||||.+|++|++.. ..+++|++|+++|+.|++++|.+.+... .+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 59999999996653 58999999999999999998852 5678999999999999999999877543 256777
Q ss_pred EEcCCCCcchh-----------------------ccCCCcEEEECchhhhHhhhcccCc------cccCcccEEEEeccc
Q 043190 768 EMTGDYTPDLM-----------------------ALLSADIIISTPEKWDGISRNWHSR------NYVKKVGLMILDEIH 818 (1492)
Q Consensus 768 ~~~g~~~~~~~-----------------------~~~~~~Iiv~Tpe~l~~l~~~~~~~------~~l~~i~liViDEaH 818 (1492)
.++|+...+.+ ....++|+++||+.|..+++.+... .++.+++++|+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 88886332200 0125789999999999888765322 236799999999999
Q ss_pred ccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHH--hcCCccee----EecCC-----------Cc
Q 043190 819 LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADW--LGVGEIGL----FNFKP-----------SV 879 (1492)
Q Consensus 819 ~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~--l~~~~~~~----~~~~~-----------~~ 879 (1492)
.++......+...+..+..+.. .....++++||||++.. +.+.+. ++.+...+ +.+.. .+
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRF-FECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHh-hhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 9875444444433333332221 12357999999998752 222222 12111000 01100 11
Q ss_pred ccc--CcEEEEeccCCccccccccccChhHHHHHh---hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 043190 880 RPV--PLEVHIQGYPGKFYCPRMNSMNKPAYAAIC---THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 880 r~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
|++ ++...+.. ...... .........+. ...+++++||||+|++.++.++..|.+..
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~----~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~------------- 296 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKE----EELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG------------- 296 (357)
T ss_pred ceeccceEEEEEe-CCchhH----HHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------------
Confidence 211 22222211 010000 00011112121 12356789999999999999998884320
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCcc
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKT 1034 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~ 1034 (1492)
.+..+..+||.+++.+|..+ ++.+|||||+++++|+|+|.+.+|+ +
T Consensus 297 -------------------~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~------~--- 342 (357)
T TIGR03158 297 -------------------LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIF------S--- 342 (357)
T ss_pred -------------------CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEE------C---
Confidence 13457789999999988654 4789999999999999999885443 1
Q ss_pred CccccCCHHHHHHhhcccC
Q 043190 1035 KRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 1035 ~~~~~~~~~~~~Qr~GRag 1053 (1492)
+.+..+|+||+||+|
T Consensus 343 ----p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 ----ARDAAAFWQRLGRLG 357 (357)
T ss_pred ----CCCHHHHhhhcccCC
Confidence 236889999999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=295.80 Aligned_cols=448 Identities=18% Similarity=0.178 Sum_probs=286.1
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC----CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcC
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTG 771 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~----~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g 771 (1492)
+..++ +.+..+||||.||||||++....++++--... ++.+-|..|+|..|..+++++...++.. |..|....
T Consensus 264 IMEaI-n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqI- 340 (1172)
T KOG0926|consen 264 IMEAI-NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQI- 340 (1172)
T ss_pred HHHHh-hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEE-
Confidence 34444 47789999999999999999988888643322 5688999999999999999988888773 66665532
Q ss_pred CCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC------c
Q 043190 772 DYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER------A 845 (1492)
Q Consensus 772 ~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~------~ 845 (1492)
..+......+.|.++|.| .++|....+..|..++.||+||||.-+ -....+-.+++|+-.+...+.. +
T Consensus 341 --Rfd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 341 --RFDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred --EeccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 122223346789999999 455665567789999999999999431 1222344455555444333333 8
Q ss_pred eEEEEEcCCCCChHHHHH---HhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeE
Q 043190 846 VRFIGLSTALANAGDLAD---WLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLI 922 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~---~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LI 922 (1492)
.++|.||||+- ..|+.+ .|.+.++ ++ ..+.|+.|+.+++.......|..... .....|....+.|.+||
T Consensus 415 LKLIIMSATLR-VsDFtenk~LFpi~pP-li--kVdARQfPVsIHF~krT~~DYi~eAf----rKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 415 LKLIIMSATLR-VSDFTENKRLFPIPPP-LI--KVDARQFPVSIHFNKRTPDDYIAEAF----RKTCKIHKKLPPGGILV 486 (1172)
T ss_pred eeEEEEeeeEE-ecccccCceecCCCCc-ee--eeecccCceEEEeccCCCchHHHHHH----HHHHHHhhcCCCCcEEE
Confidence 99999999983 444432 2222222 22 33567778888776544333332110 11223455678899999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCC-------Cccc-----------C-----CCChHHH-------HH------------
Q 043190 923 FVSSRRQTRLTALDLIQFAASDET-------PRQF-----------L-----GMPEEDL-------QM------------ 960 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~-------~~~~-----------~-----~~~~~~~-------~~------------ 960 (1492)
|+....++..++..|++..+..-. .+.+ . ....+.+ +.
T Consensus 487 FvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ra 566 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRA 566 (1172)
T ss_pred EEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhh
Confidence 999999999999999887431100 0000 0 0000000 00
Q ss_pred HHhhcCc---------------HHHHHH--------hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC
Q 043190 961 VLSQVTD---------------QNLRQT--------LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017 (1492)
Q Consensus 961 ~~~~~~~---------------~~l~~~--------~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi 1017 (1492)
......| ..+... -+.-|.++++=|+.+++..|++....|..-++|||++++++++|
T Consensus 567 a~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI 646 (1172)
T KOG0926|consen 567 AFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI 646 (1172)
T ss_pred hhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc
Confidence 0000000 001111 12348889999999999999999999999999999999999999
Q ss_pred CCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH-HHHHhhcCCCceeec
Q 043190 1018 PAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS-FYKKFLYEPFPVESS 1088 (1492)
Q Consensus 1018 p~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~-~~~~~l~~~~pies~ 1088 (1492)
|++.+||.+. ..||...+ ....+|.++.-||+|||||.| +|+||.+++..-.+ .+..+ ..| ..
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~f---S~P--EI 718 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEF---SLP--EI 718 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhh---ccH--HH
Confidence 9999999764 45777655 113467889999999999997 99999998764322 11111 111 00
Q ss_pred ccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCC
Q 043190 1089 LRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED 1168 (1492)
Q Consensus 1089 l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~ 1168 (1492)
+.....+.++ ......|.. ..+| ...+++. ...++.|...|...|+++.++
T Consensus 719 lk~Pve~lvL-qMKsMnI~k---VvnF-------------------PFPtpPd-----~~~L~~Aer~L~~LgALd~~g- 769 (1172)
T KOG0926|consen 719 LKKPVESLVL-QMKSMNIDK---VVNF-------------------PFPTPPD-----RSALEKAERRLKALGALDSNG- 769 (1172)
T ss_pred hhCcHHHHHH-HHHhcCccc---eecC-------------------CCCCCcc-----HHHHHHHHHHHHHhccccccC-
Confidence 0000111111 111122221 1111 1111111 245778999999999997754
Q ss_pred ccccccchhhhhhccccHHHHHHHHhccCCC
Q 043190 1169 TVEPTMLGTIASQYYLSYVTVSMFGSNIGPD 1199 (1492)
Q Consensus 1169 ~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~ 1199 (1492)
.+|++|+.||.|+++|+-.+|+..+....
T Consensus 770 --~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 770 --GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred --CcccccchhcccccChhHHHHHHHHHhhc
Confidence 56999999999999999999998654433
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=279.23 Aligned_cols=334 Identities=19% Similarity=0.305 Sum_probs=235.8
Q ss_pred hhHhhhcCCCCC-CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHF-NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 678 ~~~~~~~~~~~l-~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.++..||+..| ++.|.+++..+...+++|.|++|||+||++||.+|.|-. ++..|++.|..+|..++.+.+.+
T Consensus 9 eaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 9 EALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CCeEEEehHHHHHHHHHHHHHHh
Confidence 456788898877 889999999999889999999999999999999999876 67999999999999999988765
Q ss_pred HhhhccCCEEEEEcCCCCcchh---------ccCCCcEEEECchhh-----hHhhhcccCccccCcccEEEEecccccC-
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLM---------ALLSADIIISTPEKW-----DGISRNWHSRNYVKKVGLMILDEIHLLG- 821 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l-----~~l~~~~~~~~~l~~i~liViDEaH~l~- 821 (1492)
+ .+.+..+.+..+...+ ......+++.|||.. ..++..... -+.++++|+||||+++
T Consensus 84 -L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~---r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 84 -L----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN---RDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred -c----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh---hceeeeEEechhhhHhh
Confidence 2 4445555554433221 223568999999974 333333222 2467899999999984
Q ss_pred --CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcc-eeEecCCCcccc-CcEEEEeccCCcc
Q 043190 822 --AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEI-GLFNFKPSVRPV-PLEVHIQGYPGKF 895 (1492)
Q Consensus 822 --~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~-~~~~~~~~~r~~-~l~~~~~~~~~~~ 895 (1492)
.++.|.+-.+ ..+|.. .+....++++||-.. -+|+..-|....+ .+|. .+.+|.. ...+++..+....
T Consensus 156 WGHDFRPDYL~L-G~LRS~----~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTL-GSLRSV----CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDNLFYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhh-hhHHhh----CCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc-CcchhhhhhHHHHHHHHhhhH
Confidence 3455555432 223322 347788999999754 4677777766543 2222 2233221 1111111000000
Q ss_pred ccccccccChhHHHHHh--------hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCc
Q 043190 896 YCPRMNSMNKPAYAAIC--------THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTD 967 (1492)
Q Consensus 896 ~~~~~~~~~~~~~~~l~--------~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1492)
+ ..+..-....+- .....+-.||||.||.+|+.+|..|
T Consensus 230 ~----~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l------------------------------ 275 (641)
T KOG0352|consen 230 L----TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML------------------------------ 275 (641)
T ss_pred h----HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh------------------------------
Confidence 0 000000111111 1122456899999999999999776
Q ss_pred HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHH
Q 043190 968 QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQ 1047 (1492)
Q Consensus 968 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Q 1047 (1492)
.+.+.+...+|+||...+|..|.+.+.+|++.||+||..+++|||-|++++||+ |+++. +++-|.|
T Consensus 276 ----~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q------n~AgYYQ 341 (641)
T KOG0352|consen 276 ----EIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ------NLAGYYQ 341 (641)
T ss_pred ----hhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh------hhHHHHH
Confidence 334677788999999999999999999999999999999999999999999998 66543 5889999
Q ss_pred hhcccCCCCCCCceEEEEEecCCcHHHHHHhhc
Q 043190 1048 MMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1048 r~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
..|||||.| ..+.|-+++..++.+.+.-++.
T Consensus 342 ESGRAGRDG--k~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 342 ESGRAGRDG--KRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred hccccccCC--CccceeeeecccchHHHHHHHh
Confidence 999999998 8899999999988776654443
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=284.91 Aligned_cols=336 Identities=20% Similarity=0.267 Sum_probs=246.5
Q ss_pred ccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHH
Q 043190 674 ALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 674 ~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q 749 (1492)
.|....++++. ||..|+|+|++.+|.++ .+++++-.|-||||||.||.+|+++.+..+ .+-+++++.|+|+||.|
T Consensus 27 gL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 27 GLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred CCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 45556777776 99999999999999999 789999999999999999999999988764 35699999999999999
Q ss_pred HHHHHHHHhhhccCCEEEEEcCCCCcchh--cc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCc
Q 043190 750 RMNDWKDRLVSQLGKEMVEMTGDYTPDLM--AL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERG 825 (1492)
Q Consensus 750 ~~~~~~~~~~~~~g~~v~~~~g~~~~~~~--~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g 825 (1492)
..+.+++ ++...+.++.++.|+-..+.+ .+ .++|||++||+++..+.-... ..++.+.+||+||++.+-+ .+.
T Consensus 106 tlkvvkd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfq 182 (529)
T KOG0337|consen 106 TLKVVKD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQ 182 (529)
T ss_pred HHHHHHH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhH
Confidence 9987776 777777787766664333322 22 378999999999876665533 4488999999999997743 465
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcC--CcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV--GEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~--~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
.++..+++++ +...|.+++|||+|+ ++.++-.. .++.++.. .++..+.......+.......
T Consensus 183 eql~e~l~rl-------~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRl-------dvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 183 EQLHEILSRL-------PESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRL-------DVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred HHHHHHHHhC-------CCcceEEEEeccCch--hhHHHHHccCCCCceEEe-------ehhhhcchhhhhheeeeccHH
Confidence 6666666655 456699999999986 33333322 22111111 111111111111111111111
Q ss_pred Ch-hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 904 NK-PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 904 ~~-~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
+. .+...+......++++|||+|+..++.+...|.. .++++..++
T Consensus 247 K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~----------------------------------~g~~~s~iy 292 (529)
T KOG0337|consen 247 KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRD----------------------------------FGGEGSDIY 292 (529)
T ss_pred HHHHHHHHHhccccccceeEEecccchHHHHHHHHHh----------------------------------cCCCccccc
Confidence 11 1222233334456899999999999888766533 266788889
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCc
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~ 1060 (1492)
|.|++.-|..-...|..++..++|.|+++++|+|+|-..-||+ +|+| ..-|+||+||+.|+| ..
T Consensus 293 sslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin------------yd~p~~~klFvhRVgr~arag--rt 358 (529)
T KOG0337|consen 293 SSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN------------YDFPPDDKLFVHRVGRVARAG--RT 358 (529)
T ss_pred cccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc------------ccCCCCCceEEEEecchhhcc--cc
Confidence 9999999999999999999999999999999999999999998 3443 456899999999998 89
Q ss_pred eEEEEEecCCcHHHHHH
Q 043190 1061 GKAVILVHEPKKSFYKK 1077 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~ 1077 (1492)
|.+|.++.+.+..++..
T Consensus 359 g~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 359 GRAYSLVASTDDPYLLD 375 (529)
T ss_pred ceEEEEEecccchhhhh
Confidence 99999999887665443
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=294.87 Aligned_cols=257 Identities=27% Similarity=0.375 Sum_probs=185.7
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEE---------eeCC------chhHHHHHhh-
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIG---------ISEP------NFAARNELLS- 67 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~---------~~~~------~~~~~~~~~~- 67 (1492)
.|.++|+|+|||||||+.+||+|+..-....+.++-++|||.||.++++. +.++ ++.+.+..+.
T Consensus 263 lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 47899999999999999999999976444455556689999999766432 1121 1111111110
Q ss_pred --------------------------HHHHHHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCch
Q 043190 68 --------------------------EICYKKVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120 (1492)
Q Consensus 68 --------------------------~~~~~~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 120 (1492)
.-+|..+.-.. .+..|+|||+.||++||..|.++.+.-...+.. ...
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deE------k~~ 416 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEE------KEL 416 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhH------HHH
Confidence 01232222222 346799999999999999999887642221100 000
Q ss_pred hhHHHHHHHhhcC--------chHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEe
Q 043190 121 QLSLIKKDVMKSR--------NKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK 192 (1492)
Q Consensus 121 ~~~~~~~~~~~~~--------~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~ 192 (1492)
-...+..++.... -+.+.-+|++|||+||+||.|--++.||=+|.+|.+|||+||.|++.|+|+||.+||+.
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 0111222222211 24567789999999999999999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCccc-CchhhhhhccCCCCCCccceEEEEeCCccH-HHHHHHhcC-CCccccchhHhHHHHHHHHHH
Q 043190 193 GTQLYDPKAGGWRD-LGMLDIFGRAGRPQFDRSGEGIIITSHDKL-AYYLRLLTS-QLPIESQFISSLKDNLNAEVA 266 (1492)
Q Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~-~~~~~~~~~-~~~ies~l~~~l~~~l~~ei~ 266 (1492)
..+.||++..+|-. -.|+||.|||||.|.|..|.+|++.+...- .....++.+ +.|+.|.++-.....||-.-+
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRv 573 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRV 573 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHH
Confidence 99999998877644 569999999999999999999999987643 334445544 568999998877777775433
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=298.64 Aligned_cols=269 Identities=26% Similarity=0.344 Sum_probs=193.7
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC-------------C----chhHH----
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE-------------P----NFAAR---- 62 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~-------------~----~~~~~---- 62 (1492)
.|+++++|+||||+||..+||+|+|.-....++++++..|||||++++..-.+ . ++...
T Consensus 431 lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~a 510 (1248)
T KOG0947|consen 431 LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEA 510 (1248)
T ss_pred ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccc
Confidence 58899999999999999999999998877888999999999999876542100 0 00000
Q ss_pred -----------H-------------HHh---------hH---HHHHHHHHHHhc--CCcEEEEEechHHHHHHHHHHHHH
Q 043190 63 -----------N-------------ELL---------SE---ICYKKVVDSLRQ--GHQAMVFVHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 63 -----------~-------------~~~---------~~---~~~~~~~~~~~~--~~~~lVF~~sr~~~~~~a~~l~~~ 104 (1492)
. ... +. ..+..++.++.. --|++|||.||+.|+..|+.|...
T Consensus 511 k~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 511 KFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred cccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc
Confidence 0 000 00 123334444433 358999999999999999998653
Q ss_pred HHhcCCccccCCCCchhhHHHHHHHh-hc--Cc------hHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEec
Q 043190 105 ARRYEDLEVFNNDTHPQLSLIKKDVM-KS--RN------KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCT 175 (1492)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~------~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT 175 (1492)
-. ....+..+...+.+... .. .+ ..+++++.+|+|+||||+.|-.++.||.+|..|.+|||+||
T Consensus 591 nL-------~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 591 NL-------TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred Cc-------ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 21 11111222222222211 11 12 35788999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEEeccceecCCCCC-cccCchhhhhhccCCCCCCccceEEEEeCCc--cHHHHHHH-hcCCCcccc
Q 043190 176 ATLAWGVNLPAHTVVIKGTQLYDPKAGG-WRDLGMLDIFGRAGRPQFDRSGEGIIITSHD--KLAYYLRL-LTSQLPIES 251 (1492)
Q Consensus 176 ~tla~Gvnlp~~~vVI~~~~~~~~~~~~-~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~--~~~~~~~~-~~~~~~ies 251 (1492)
.|+|+|||+||++||+.+....|+.... ..+-.|.||+|||||.|.|..|.+|+++... +...+.++ ++.+.+++|
T Consensus 664 ETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~S 743 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLES 743 (1248)
T ss_pred hhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhh
Confidence 9999999999999999999999986533 4556799999999999999999999999765 45555554 566779999
Q ss_pred chhHhHHHHHHHHHHhCcccCHHHHHHHhhhhh
Q 043190 252 QFISSLKDNLNAEVALGTVTNVKEACAWLGYTY 284 (1492)
Q Consensus 252 ~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~ 284 (1492)
++.-.....||-.-+ +...+-+-++++|
T Consensus 744 QFRlTY~MILnLLRv-----e~lrvEdm~krSf 771 (1248)
T KOG0947|consen 744 QFRLTYGMILNLLRV-----EALRVEDMMKRSF 771 (1248)
T ss_pred hhhhHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 998765555553211 1134455566665
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=305.19 Aligned_cols=431 Identities=16% Similarity=0.179 Sum_probs=291.1
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
...+.+.+.++- ++++++|+|.||||||+.....|++... .++..++++..|+|--|..+++++....+...|..|+.
T Consensus 175 ~~~r~~Il~~i~-~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 175 YKMRDTILDAIE-ENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred HHHHHHHHHHHH-hCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 445566666664 8899999999999999999999998653 33567899999999999999999988777666766655
Q ss_pred EcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEE
Q 043190 769 MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRF 848 (1492)
Q Consensus 769 ~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~i 848 (1492)
..+-. ......+.+.+||.|.+. |.......+..+.++|+||+|.-+ ..-+.++-.++.+.. ..++.++
T Consensus 254 qvrl~---~~~s~~t~L~fcTtGvLL---r~L~~~~~l~~vthiivDEVHER~----i~~DflLi~lk~lL~-~~p~Lkv 322 (924)
T KOG0920|consen 254 QVRLE---SKRSRETRLLFCTTGVLL---RRLQSDPTLSGVTHIIVDEVHERS----INTDFLLILLKDLLP-RNPDLKV 322 (924)
T ss_pred EEeee---cccCCceeEEEecHHHHH---HHhccCcccccCceeeeeeEEEcc----CCcccHHHHHHHHhh-hCCCceE
Confidence 43321 222234889999999654 444446778999999999999543 222233333333332 3479999
Q ss_pred EEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEe-------cc---CCcccc-cc------------ccccCh
Q 043190 849 IGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQ-------GY---PGKFYC-PR------------MNSMNK 905 (1492)
Q Consensus 849 i~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~-------~~---~~~~~~-~~------------~~~~~~ 905 (1492)
|+||||+ |++.+..|||..+.- ....+..|+..++. .+ ....+. .. ....+.
T Consensus 323 ILMSAT~-dae~fs~YF~~~pvi----~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 323 ILMSATL-DAELFSDYFGGCPVI----TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred EEeeeec-chHHHHHHhCCCceE----eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 9999998 689999999855431 11222222211110 00 000000 00 000111
Q ss_pred ----hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEee
Q 043190 906 ----PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLH 981 (1492)
Q Consensus 906 ----~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~ 981 (1492)
.+...+......+.+|||.|+..++..+...|....... ....+-+.++
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~---------------------------~~~~~~ilpl 450 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA---------------------------DSLKFAILPL 450 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc---------------------------cccceEEEec
Confidence 122333444567899999999999998887774322111 1124668899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccC
Q 043190 982 HAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 982 h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRag 1053 (1492)
|+.|+..+++.|++....|..+|++||++++.+|+||++.+||... ..||+..+ ...+.|.++..||.||||
T Consensus 451 Hs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG 530 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG 530 (924)
T ss_pred cccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc
Confidence 9999999999999999999999999999999999999999999764 46887654 224457889999999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccC
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~ 1133 (1492)
|. ..|.||.+++... |+++.. ..++.+.+...|.+..+..-+ ....+..+||+ ++...|.
T Consensus 531 Rv---~~G~cy~L~~~~~---~~~~~~-~~q~PEilR~pL~~l~L~iK~----l~~~~~~~fLs------kaldpP~--- 590 (924)
T KOG0920|consen 531 RV---RPGICYHLYTRSR---YEKLML-AYQLPEILRTPLEELCLHIKV----LEQGSIKAFLS------KALDPPP--- 590 (924)
T ss_pred Cc---cCCeeEEeechhh---hhhccc-ccCChHHHhChHHHhhheeee----ccCCCHHHHHH------HhcCCCC---
Confidence 98 5999999998754 444333 122223334434443322211 11122223333 2222221
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCC
Q 043190 1134 LEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT 1200 (1492)
Q Consensus 1134 ~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~ 1200 (1492)
.+.+..|+..|.+.|+++.++ .+|++|+.+|.+|+++.-.+++..+.-..+
T Consensus 591 -------------~~~v~~a~~~L~~igaL~~~e---~LT~LG~~la~lPvd~~igK~ll~g~if~c 641 (924)
T KOG0920|consen 591 -------------ADAVDLAIERLKQIGALDESE---ELTPLGLHLASLPVDVRIGKLLLFGAIFGC 641 (924)
T ss_pred -------------hHHHHHHHHHHHHhccccCcc---cchHHHHHHHhCCCccccchhheehhhccc
Confidence 245789999999999998877 569999999999999999999876544433
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=312.68 Aligned_cols=337 Identities=21% Similarity=0.298 Sum_probs=254.1
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..+...||...|+|-|.+++..++ .|++++|.+|||+||++||.+|++-. ++..|+|.|..+|+..+...+..
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l-~Gkd~fvlmpTG~GKSLCYQlPA~l~-----~gitvVISPL~SLm~DQv~~L~~- 326 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATL-SGKDCFVLMPTGGGKSLCYQLPALLL-----GGVTVVISPLISLMQDQVTHLSK- 326 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHH-cCCceEEEeecCCceeeEeecccccc-----CCceEEeccHHHHHHHHHHhhhh-
Confidence 345667899999999999999888 89999999999999999999998765 67999999999999988776533
Q ss_pred hhhccCCEEEEEcCCCCcchh-------ccC--CCcEEEECchhhhHhhhcccCccccCc---ccEEEEecccccCCCCc
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM-------ALL--SADIIISTPEKWDGISRNWHSRNYVKK---VGLMILDEIHLLGAERG 825 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~-------~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~---i~liViDEaH~l~~~~g 825 (1492)
. ++....+++......+ ... ..+|++.|||++...-+-......+.. +.++||||||++. .+|
T Consensus 327 ---~-~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWg 401 (941)
T KOG0351|consen 327 ---K-GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWG 401 (941)
T ss_pred ---c-CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhc
Confidence 2 7888888887665311 112 569999999987432222111222333 8999999999984 344
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
..++.-..++..+....+ ...+|++|||... .+|+.+-|+.....++. ..+.+..+...+..-.. ...
T Consensus 402 HdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~-------~~~ 471 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTD-------KDA 471 (941)
T ss_pred ccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccC-------ccc
Confidence 444444444443333332 4789999999744 68999999988766543 33333333333321111 111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
.......+....+...+||||.++++|+.++..|... +...++||+
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~----------------------------------~~~a~~YHA 517 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL----------------------------------GKSAAFYHA 517 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh----------------------------------chhhHhhhc
Confidence 1223444566678899999999999999999888553 356789999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
||++.+|..|.+.|..++++|+|||=++++|||.|+|+.||+ |+ .+-+++.|.|-+|||||.| ....|
T Consensus 518 Gl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~------lPks~E~YYQE~GRAGRDG--~~s~C 585 (941)
T KOG0351|consen 518 GLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YS------LPKSFEGYYQEAGRAGRDG--LPSSC 585 (941)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CC------CchhHHHHHHhccccCcCC--Cccee
Confidence 999999999999999999999999999999999999999998 33 2235889999999999998 88999
Q ss_pred EEEecCCcHHHHHHhhcCC
Q 043190 1064 VILVHEPKKSFYKKFLYEP 1082 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~~~ 1082 (1492)
++++...+......++...
T Consensus 586 ~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 586 VLLYGYADISELRRLLTSG 604 (941)
T ss_pred EEecchhHHHHHHHHHHcc
Confidence 9999998888888888665
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=290.06 Aligned_cols=338 Identities=20% Similarity=0.310 Sum_probs=216.9
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.-.++++|.+....++ ++|+||++|||+|||++|...++.++...+++++|+++|++-|+.|+...+...+. +..
T Consensus 60 ~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~---~~~ 134 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLI---PYS 134 (746)
T ss_pred cccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccC---ccc
Confidence 3469999999999988 89999999999999999999999999998899999999999999999865554332 233
Q ss_pred EEEEcCC-CCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc
Q 043190 766 MVEMTGD-YTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 766 v~~~~g~-~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
+....|| ..... ......+|+|+||+.+..-+.+..... ++.+.++||||||+-. ....|..++..+....
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~--kn~~Y~~Vmr~~l~~k--- 208 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTS--KNHPYNNIMREYLDLK--- 208 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEccccccc--ccccHHHHHHHHHHhh---
Confidence 4344444 32222 223477999999998866666544433 7899999999999763 2234555553333222
Q ss_pred CCceEEEEEcCCCCC-hHHHHHHh---cCC----cceeE----ec--CCCccccCcEEE---------------------
Q 043190 843 ERAVRFIGLSTALAN-AGDLADWL---GVG----EIGLF----NF--KPSVRPVPLEVH--------------------- 887 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~-~~~~~~~l---~~~----~~~~~----~~--~~~~r~~~l~~~--------------------- 887 (1492)
....|++|||||+++ .+.+.+.. .+. ....+ .. .....|+++...
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 224499999999986 22222211 110 00000 00 000000000000
Q ss_pred ------------------------EeccCCccc--------------------------------------ccc--c---
Q 043190 888 ------------------------IQGYPGKFY--------------------------------------CPR--M--- 900 (1492)
Q Consensus 888 ------------------------~~~~~~~~~--------------------------------------~~~--~--- 900 (1492)
..+++.... ... .
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 000000000 000 0
Q ss_pred ---------cccC------------hhHH----HHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC
Q 043190 901 ---------NSMN------------KPAY----AAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952 (1492)
Q Consensus 901 ---------~~~~------------~~~~----~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 952 (1492)
..|+ .+.+ ..+ ....+..++||||.+|..|..+...|.+.....-.+..|
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~f-- 446 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIF-- 446 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccccee--
Confidence 0000 0000 000 012456789999999999998888775422111111111
Q ss_pred CChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeC
Q 043190 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032 (1492)
Q Consensus 953 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~ 1032 (1492)
.|.+-..-..+|++.++.++++.|++|+++|||||+++++|+|++.+++||. ||-
T Consensus 447 ---------------------iGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd~ 501 (746)
T KOG0354|consen 447 ---------------------IGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC----YDY 501 (746)
T ss_pred ---------------------eeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE----ecC
Confidence 1222222337999999999999999999999999999999999999999998 553
Q ss_pred ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.. +....+||.|| ||+ +.|+|+++++...
T Consensus 502 ~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 502 SS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSE 530 (746)
T ss_pred Cc------cHHHHHHHhcc-ccc---cCCeEEEEEcchh
Confidence 22 47889999999 997 6899999998444
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=294.52 Aligned_cols=312 Identities=17% Similarity=0.186 Sum_probs=199.9
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
..|+++|.++++.++ .+++.++++|||+|||+++...+...+. ....++|+++||++|+.|..+++.+.. ......+
T Consensus 113 ~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~~~~~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~-~~~~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLSRYYLE-NYEGKVLIIVPTTSLVTQMIDDFVDYR-LFPREAM 189 (501)
T ss_pred CCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECcHHHHHHHHHHHHHhc-cccccce
Confidence 469999999999988 5678999999999999987653322232 234599999999999999999987743 2212334
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..+.|+.... .+.+|+|+||+++.... ..++++++++|+||||++.. ..+..++..+ +...
T Consensus 190 ~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~-------~~~~ 250 (501)
T PHA02558 190 HKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG---KSLTSIITKL-------DNCK 250 (501)
T ss_pred eEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc---hhHHHHHHhh-------hccc
Confidence 3333333221 35799999999875322 23468899999999998853 3455554433 2356
Q ss_pred EEEEEcCCCCChHH----HHHHhcCCcceeEecC---CCccccCcEEE--EeccCC--------ccccccc----cc--c
Q 043190 847 RFIGLSTALANAGD----LADWLGVGEIGLFNFK---PSVRPVPLEVH--IQGYPG--------KFYCPRM----NS--M 903 (1492)
Q Consensus 847 ~ii~lSATl~~~~~----~~~~l~~~~~~~~~~~---~~~r~~~l~~~--~~~~~~--------~~~~~~~----~~--~ 903 (1492)
+++|+|||+.+... +..++|.-... .... ......+.... ...++. ..+.... .. .
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG~i~~~-v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFGDIFKP-VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhCCceEE-ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 78999999965321 22334311100 0000 00000011110 000110 0000000 00 0
Q ss_pred ChhHHHHHh-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 904 NKPAYAAIC-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 904 ~~~~~~~l~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
+..+...+. ....+++++||+++.++++.++..|.+ .+..+..+|
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~----------------------------------~g~~v~~i~ 375 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK----------------------------------VYDKVYYVS 375 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH----------------------------------cCCCEEEEe
Confidence 000111111 113567899999999999888877743 256789999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEec-cccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCce
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCT-STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHG 1061 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT-~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G 1061 (1492)
|+++.++|..+++.|++|+..||||| +++++|+|+|++++||. +.|.. +...|+||+||++|.+. .+.
T Consensus 376 G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~QriGR~~R~~~-~K~ 444 (501)
T PHA02558 376 GEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQSIGRVLRKHG-SKS 444 (501)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhhhhhccccCCC-CCc
Confidence 99999999999999999999999998 89999999999999996 33322 46789999999999873 233
Q ss_pred EEEEE
Q 043190 1062 KAVIL 1066 (1492)
Q Consensus 1062 ~~i~l 1066 (1492)
.|.++
T Consensus 445 ~~~i~ 449 (501)
T PHA02558 445 IATVW 449 (501)
T ss_pred eEEEE
Confidence 44444
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=257.91 Aligned_cols=437 Identities=18% Similarity=0.197 Sum_probs=285.8
Q ss_pred HHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcC
Q 043190 692 IQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTG 771 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g 771 (1492)
-|++-|-.++.+++-+++.|.||||||+......+...... ...+.+..|.|..|.+++.++...+.-.+|..|+..
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGys-- 126 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYS-- 126 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-ccceeecCchHHHHHHHHHHHHHHhccccchhcccc--
Confidence 45666777777889999999999999999888887765543 478899999999999999988877644444444332
Q ss_pred CCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 772 DYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 772 ~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
...+.....++-+-+||.++ ++|.......+.++++||+|||| +|....+.+...++.+.... ++.++|.|
T Consensus 127 -IrfEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~~~r-pdLk~vvm 197 (699)
T KOG0925|consen 127 -IRFEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVVRNR-PDLKLVVM 197 (699)
T ss_pred -ccccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHHhhC-CCceEEEe
Confidence 22222222334455778774 45555567789999999999999 66666777777777666544 59999999
Q ss_pred cCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHH
Q 043190 852 STALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTR 931 (1492)
Q Consensus 852 SATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~ 931 (1492)
|||+ .+..+..|++..+. ..... ..|.++.+..-+...+.. +. ......|......|.+|||.++.++.+
T Consensus 198 Satl-~a~Kfq~yf~n~Pl--l~vpg---~~PvEi~Yt~e~erDylE---aa-irtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 198 SATL-DAEKFQRYFGNAPL--LAVPG---THPVEIFYTPEPERDYLE---AA-IRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred eccc-chHHHHHHhCCCCe--eecCC---CCceEEEecCCCChhHHH---HH-HHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 9998 67888888876552 22221 234444332222222221 11 112333444566889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc---C--CceEEE
Q 043190 932 LTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN---N--KIQVLV 1006 (1492)
Q Consensus 932 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~---g--~~~vLv 1006 (1492)
..++.+.....+- ........|.++| +.++..+++.... | ..+|+|
T Consensus 268 ~aC~~i~re~~~L-------------------------~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 268 DACRKISREVDNL-------------------------GPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHHHHHHhh-------------------------ccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 8888775432211 1122345677777 5555555554432 2 368999
Q ss_pred eccccccccCCCCcEEEEec----ceeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1007 CTSTLAWGVNLPAHLVIIKG----TEYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1007 aT~~l~~Gvdip~~~~VI~~----~~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
+|++++.++.++++.+||.. .+.|+|+.+ -..++|.++..||.|||||. .+|.|+.++++.- +++-
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte~~---~~~e 392 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEA---FEKE 392 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecHHh---hhhc
Confidence 99999999999999999963 367888755 23467899999999999997 6999999987633 3322
Q ss_pred h-cCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHh
Q 043190 1079 L-YEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDL 1157 (1492)
Q Consensus 1079 l-~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L 1157 (1492)
+ ....| .-+..+|...++..-..| .+ ++.+++.-+.. --+.++.|++.|
T Consensus 393 m~~~typ--eilrsNL~s~VL~LKklg----I~-----------------dlvhfdfmDpP-------APEtLMrALE~L 442 (699)
T KOG0925|consen 393 MQPQTYP--EILRSNLSSTVLQLKKLG----ID-----------------DLVHFDFMDPP-------APETLMRALEVL 442 (699)
T ss_pred CCCCCcH--HHHHHhhHHHHHHHHhcC----cc-----------------cccCCcCCCCC-------ChHHHHHHHHHh
Confidence 2 22222 122222222222111111 11 12222222211 124567889999
Q ss_pred HHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHH---HHhCCCCCCCCcCCCC
Q 043190 1158 EDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLH---ILSGASEYDELPVRHN 1223 (1492)
Q Consensus 1158 ~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~---ils~a~Ef~~i~~R~~ 1223 (1492)
.-.+++.-+++. |++|.+||.|+++|..+++++.+...+++- ++|. +++...- .+|.+
T Consensus 443 nYLaaLdDdGnL---T~lG~imSEFPLdPqLAkmLi~S~efnCsn-EiLsisAMLsvPnc----FvRp~ 503 (699)
T KOG0925|consen 443 NYLAALDDDGNL---TSLGEIMSEFPLDPQLAKMLIGSCEFNCSN-EILSISAMLSVPNC----FVRPT 503 (699)
T ss_pred hhhhhhCCCccc---chhhhhhhcCCCChHHHHHHhhcCCCCchH-HHHHHHhcccCCcc----ccCCC
Confidence 999998655554 999999999999999999999887766654 4443 4444444 44554
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=312.52 Aligned_cols=335 Identities=17% Similarity=0.139 Sum_probs=217.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.++..+|| .|+++|.++++.++ .|++++++||||||||++++.+.+.... ++.++++++||++|+.|+++.+....
T Consensus 71 ~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~~--~g~~aLVl~PTreLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 71 FFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLAL--KGKKCYIILPTTLLVKQTVEKIESFC 146 (1638)
T ss_pred HHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHHh--cCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 34455599 59999999999999 7899999999999999976665554432 36799999999999999999998744
Q ss_pred hhc-cCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--------
Q 043190 759 VSQ-LGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-------- 822 (1492)
Q Consensus 759 ~~~-~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-------- 822 (1492)
... .+.++..++|+.+...+. ...++|+|+||+++...+... ...+++++||||||++..
T Consensus 147 ~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 147 EKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccccchh
Confidence 332 256778888887654321 125899999999876554431 126789999999998753
Q ss_pred ----CCccHHHH----HHH---------------HHHHhhhccCCceE-EEEEcCCCCChHHHHHHhcCCcceeEecCCC
Q 043190 823 ----ERGPILEV----IVS---------------RMRYISSQTERAVR-FIGLSTALANAGDLADWLGVGEIGLFNFKPS 878 (1492)
Q Consensus 823 ----~~g~~~~~----i~~---------------~l~~~~~~~~~~~~-ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~ 878 (1492)
++.+.+.. ++. .++......+...+ ++.+|||.+...+...++.... .+.....
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l--~f~v~~~ 300 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL--GFEVGSG 300 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe--EEEecCC
Confidence 33333332 111 11111112233444 5778999986555555552111 1211111
Q ss_pred ccccC-cEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHH---HHHHHHHHHHHhcCCCCcccCCCC
Q 043190 879 VRPVP-LEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQT---RLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 879 ~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~---~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
..... +...+.. .. ... ...+...+... +.++||||+|++.+ +.++..|.+
T Consensus 301 ~~~lr~i~~~yi~------~~-~~~-k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~--------------- 355 (1638)
T PRK14701 301 RSALRNIVDVYLN------PE-KII-KEHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLE--------------- 355 (1638)
T ss_pred CCCCCCcEEEEEE------CC-HHH-HHHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHH---------------
Confidence 10111 1111100 00 000 11222333332 46899999998864 677766633
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec----cccccccCCCC-cEEEEeccee
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT----STLAWGVNLPA-HLVIIKGTEY 1029 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT----~~l~~Gvdip~-~~~VI~~~~~ 1029 (1492)
.++.+..+||+ |..+++.|++|+++||||| ++++||||+|+ +++||+
T Consensus 356 -------------------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~---- 407 (1638)
T PRK14701 356 -------------------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF---- 407 (1638)
T ss_pred -------------------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE----
Confidence 26788999985 8899999999999999999 58999999998 999997
Q ss_pred eeCccCccccCCHH-------------HHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1030 YDGKTKRYVDFPIT-------------DILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1030 ~~~~~~~~~~~~~~-------------~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
|+.|..+ +++. ...++.|||||.| ..+.++..+........++++..
T Consensus 408 ~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 408 YGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred eCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 6655421 2222 2456679999988 56666655445555556666554
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=250.69 Aligned_cols=336 Identities=21% Similarity=0.306 Sum_probs=242.8
Q ss_pred CCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 668 ~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
..+|.+.-...+++..|..+.|+|.|..+++..+ .+.++++..|||.||++||.+|.+.. .+-+++++|..+|+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a-----dg~alvi~plislm 147 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA-----DGFALVICPLISLM 147 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc-----CCceEeechhHHHH
Confidence 3455555556788888899999999999999998 88999999999999999999999875 78999999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchh---------ccCCCcEEEECchhhh---HhhhcccCccccCcccEEEEe
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---------ALLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILD 815 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViD 815 (1492)
..+.-.+++ + |+....+....+.+.. ...+..+++.|||++. .++.+.........+.+|-||
T Consensus 148 edqil~lkq-l----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 148 EDQILQLKQ-L----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred HHHHHHHHH-h----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 988777665 2 7666555554432211 1124589999999873 222222222234578899999
Q ss_pred cccccC---CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEec
Q 043190 816 EIHLLG---AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG 890 (1492)
Q Consensus 816 EaH~l~---~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~ 890 (1492)
|+|+-+ .++.+.+..+ ..+++ + -++..++|++||..| .+|..+.|++... +.|...+....+...+..
T Consensus 223 evhccsqwghdfr~dy~~l-~ilkr---q-f~~~~iigltatatn~vl~d~k~il~ie~~--~tf~a~fnr~nl~yev~q 295 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKAL-GILKR---Q-FKGAPIIGLTATATNHVLDDAKDILCIEAA--FTFRAGFNRPNLKYEVRQ 295 (695)
T ss_pred ceeehhhhCcccCcchHHH-HHHHH---h-CCCCceeeeehhhhcchhhHHHHHHhHHhh--heeecccCCCCceeEeee
Confidence 999763 4555655532 22322 1 247789999999876 5677777766543 334444444444443332
Q ss_pred cCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHH
Q 043190 891 YPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNL 970 (1492)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 970 (1492)
-|+.. ..........+...-.+...||||-|+++|+.++..|..
T Consensus 296 kp~n~-----dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn------------------------------- 339 (695)
T KOG0353|consen 296 KPGNE-----DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKN------------------------------- 339 (695)
T ss_pred CCCCh-----HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHh-------------------------------
Confidence 22211 111112233344445677899999999999999988733
Q ss_pred HHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHH---
Q 043190 971 RQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQ--- 1047 (1492)
Q Consensus 971 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Q--- 1047 (1492)
++...+.+|+.|.+++|.-+-+.+..|+++|+|||-.+++|||-|++++||+.. .+-|+..|.|
T Consensus 340 ---~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs----------l~ksienyyqasa 406 (695)
T KOG0353|consen 340 ---HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS----------LPKSIENYYQASA 406 (695)
T ss_pred ---cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc----------cchhHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999832 3335778888
Q ss_pred ----------------------------------------hhcccCCCCCCCceEEEEEecCCcH
Q 043190 1048 ----------------------------------------MMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1048 ----------------------------------------r~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
..|||||.+ .+..|++++.-.+.
T Consensus 407 rillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~di 469 (695)
T KOG0353|consen 407 RILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADI 469 (695)
T ss_pred HHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHH
Confidence 789999976 78999998765543
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=278.75 Aligned_cols=317 Identities=17% Similarity=0.234 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHhhhcCC--CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTD--NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~--~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.++|+|.+++..++.++ ++.++++|||+|||++++.++... +.++||+||+..|+.|..+++.+.+. .....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~-l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWST-IDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcC-CCCce
Confidence 58999999999988554 478999999999999998766543 56899999999999998888776432 22356
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccC----cccc--CcccEEEEecccccCCCCccHHHHHHHHHHHhh
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHS----RNYV--KKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~----~~~l--~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~ 839 (1492)
+..++|+.... .....+|+|+|+..+.....+... ...+ ..+++||+||||++.. ..+..++..+.
T Consensus 329 I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il~~l~--- 400 (732)
T TIGR00603 329 ICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVLTIVQ--- 400 (732)
T ss_pred EEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHHHhcC---
Confidence 77777754321 123478999999876432222100 0112 3678999999998842 23333333321
Q ss_pred hccCCceEEEEEcCCCCChH----HHHHHhcCCcceeEecCC-------CccccCcEEEEeccCCccccc----------
Q 043190 840 SQTERAVRFIGLSTALANAG----DLADWLGVGEIGLFNFKP-------SVRPVPLEVHIQGYPGKFYCP---------- 898 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~~~----~~~~~l~~~~~~~~~~~~-------~~r~~~l~~~~~~~~~~~~~~---------- 898 (1492)
....+|||||+...+ ++...+|.. ++.... -.-++.............+..
T Consensus 401 -----a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 401 -----AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred -----cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 335699999986432 232223321 111110 000111000011111100000
Q ss_pred cccccChhHHH---HHh-hc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 899 RMNSMNKPAYA---AIC-TH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 899 ~~~~~~~~~~~---~l~-~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
....++...+. .+. .+ ..+.++||||.+...+..++..|
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------------ 516 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------------ 516 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc------------------------------------
Confidence 00112211111 122 22 36789999999988777666443
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcC-CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhccc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANN-KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g-~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRa 1052 (1492)
++.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|++++||+ ++++.+ +..+|+||+||+
T Consensus 517 ---~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g-----S~~q~iQRlGRi 584 (732)
T TIGR00603 517 ---GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG-----SRRQEAQRLGRI 584 (732)
T ss_pred ---CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC-----CHHHHHHHhccc
Confidence 345689999999999999999975 8899999999999999999999997 443322 688999999999
Q ss_pred CCCCCCCc-----eEEEEEecCCcHHH
Q 043190 1053 GRPQYDQH-----GKAVILVHEPKKSF 1074 (1492)
Q Consensus 1053 gR~g~~~~-----G~~i~l~~~~~~~~ 1074 (1492)
+|++.+.. ...|.+++.+..+.
T Consensus 585 lR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 585 LRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred ccCCCCCccccccceEEEEecCCchHH
Confidence 99984322 33477887766543
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=264.19 Aligned_cols=318 Identities=20% Similarity=0.337 Sum_probs=224.5
Q ss_pred CCCCCCHHHHHHHHhhhc---C--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYH---T--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~---~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+|+ ||.-|.+++..+.. + ..+=+++|.-|||||+++.++++..+.. |.++..++||--||.|.++.+.+.|.
T Consensus 260 PF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 260 PFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHHHhh
Confidence 776 99999999998862 1 2467999999999999999999999875 89999999999999999999999888
Q ss_pred hccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
+. |++|..++|......+. ....+|+|+|.. ++.. ...+++++++|+||=|+.+- .
T Consensus 337 ~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQd---~V~F~~LgLVIiDEQHRFGV---------~ 399 (677)
T COG1200 337 PL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQD---KVEFHNLGLVIIDEQHRFGV---------H 399 (677)
T ss_pred hc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhhc---ceeecceeEEEEeccccccH---------H
Confidence 87 89999999987654322 235799999974 4443 34588999999999997752 2
Q ss_pred HHHHHhhhccCC-ceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 833 SRMRYISSQTER-AVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 833 ~~l~~~~~~~~~-~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
.|..-.. .+. .+.++.||||+-.-.-....+|--+..++.--|..| .|+....... ......+..+
T Consensus 400 QR~~L~~--KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GR-kpI~T~~i~~----------~~~~~v~e~i 466 (677)
T COG1200 400 QRLALRE--KGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGR-KPITTVVIPH----------ERRPEVYERI 466 (677)
T ss_pred HHHHHHH--hCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCC-CceEEEEecc----------ccHHHHHHHH
Confidence 2222111 133 688999999974422222333333333332222222 2232222110 1112233333
Q ss_pred h-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH-HhccceEeecCCCCHHH
Q 043190 912 C-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ-TLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 912 ~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~h~~l~~~~ 989 (1492)
. ....++++.+.||-.++.+.+-..- .++.. +.|.. ..+..++.+||.|+.++
T Consensus 467 ~~ei~~GrQaY~VcPLIeESE~l~l~~-----------------a~~~~--------~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 467 REEIAKGRQAYVVCPLIEESEKLELQA-----------------AEELY--------EELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred HHHHHcCCEEEEEeccccccccchhhh-----------------HHHHH--------HHHHHHcccceeEEEecCCChHH
Confidence 2 2357889999999887766332100 00110 11222 23567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
++.|+++|++|+++|||||.+.+.|||+|+.++.|. +++. .+..+++.|-.||+||.+ ..+.|++++.+
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AE-----RFGLaQLHQLRGRVGRG~--~qSyC~Ll~~~ 590 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAE-----RFGLAQLHQLRGRVGRGD--LQSYCVLLYKP 590 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echh-----hhhHHHHHHhccccCCCC--cceEEEEEeCC
Confidence 999999999999999999999999999999887543 2221 235899999999999965 89999999987
Q ss_pred Cc
Q 043190 1070 PK 1071 (1492)
Q Consensus 1070 ~~ 1071 (1492)
+.
T Consensus 591 ~~ 592 (677)
T COG1200 591 PL 592 (677)
T ss_pred CC
Confidence 76
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=287.33 Aligned_cols=359 Identities=19% Similarity=0.200 Sum_probs=226.0
Q ss_pred CCCHHHHHHHHhhhcC--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHT--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.|++.|.++++.+.+. ++++++.||||||||.+|+.++...+.. +.++++++|+++|+.|+++++++.| |.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARF----GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh----CCC
Confidence 5999999999999853 5789999999999999999888887764 7899999999999999999988765 678
Q ss_pred EEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHHHH-HHHHH
Q 043190 766 MVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPILEV-IVSRM 835 (1492)
Q Consensus 766 v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~~~-i~~~l 835 (1492)
+..++|+.+...+. ....+|+|+|++.+. ..++++++|||||+|..+- ..++.+.. -+..+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 88999987654321 235799999997542 2367899999999997642 23333311 11122
Q ss_pred HHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCc--cccCcEEEEeccCCccccccccccChhHHHHHhh
Q 043190 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSV--RPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT 913 (1492)
Q Consensus 836 ~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 913 (1492)
+. ...+.++|++|||++ .+.+..-.. ............ ++.| .+.+.+............+...++..+..
T Consensus 289 ra----~~~~~~~il~SATps-~~s~~~~~~-g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 289 RA----KLENIPVVLGSATPS-LESLANAQQ-GRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred Hh----hccCCCEEEEcCCCC-HHHHHHHhc-cceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 21 134789999999964 343332211 111222222111 1112 22222221100000001133445555544
Q ss_pred c-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcc--------------cC-----------C----------CChHH
Q 043190 914 H-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ--------------FL-----------G----------MPEED 957 (1492)
Q Consensus 914 ~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~--------------~~-----------~----------~~~~~ 957 (1492)
. ..++++|||+|++..+..+...-|.....+..... ++ . ...+.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 3 45679999999988765555444432211111000 00 0 01111
Q ss_pred HHHHHhhcCcHHHHHH-hccceEeecCCCC--HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEe--cceeeeC
Q 043190 958 LQMVLSQVTDQNLRQT-LQFGIGLHHAGLN--DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK--GTEYYDG 1032 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~-~~~~v~~~h~~l~--~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~--~~~~~~~ 1032 (1492)
+. +.+... .+.++...|+++. .++++.+++.|++|+.+|||+|+++++|+|+|++++|+. .....+.
T Consensus 442 ~~--------e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 442 LE--------EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred HH--------HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 11 223333 3568899999986 467899999999999999999999999999999997752 1111111
Q ss_pred ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
+.-+..+-....|.|++|||||.+ ..|.+++.+..++...++.+
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHHHH
Confidence 110001112578999999999976 89999999987765554443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=271.05 Aligned_cols=323 Identities=18% Similarity=0.185 Sum_probs=209.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |+|+|..+++.++ .|+ |..+.||+|||++|.+|++..... +..+++++||++||.|.++.+...+. .+|+
T Consensus 101 g~~-p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al~--G~~v~VvTptreLA~qdae~~~~l~~-~lGl 173 (656)
T PRK12898 101 GQR-HFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAALA--GLPVHVITVNDYLAERDAELMRPLYE-ALGL 173 (656)
T ss_pred CCC-CChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhhc--CCeEEEEcCcHHHHHHHHHHHHHHHh-hcCC
Confidence 665 8899999999998 565 999999999999999999987654 78999999999999999998887554 5599
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhccc-----------------------CccccCcccEEEEecccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWH-----------------------SRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~-----------------------~~~~l~~i~liViDEaH~ 819 (1492)
+|+.+.|+.+.+.+ ...+++|+++|...| -+.+|... .....+.+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 99999998765433 335789999999886 22232211 112345678999999994
Q ss_pred c--CCCC----------cc----HHHHHHHHHHHhhhc--c--CC-----------------------------------
Q 043190 820 L--GAER----------GP----ILEVIVSRMRYISSQ--T--ER----------------------------------- 844 (1492)
Q Consensus 820 l--~~~~----------g~----~~~~i~~~l~~~~~~--~--~~----------------------------------- 844 (1492)
+ ++.+ .. .+..+....+.+... . ..
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 3 1111 11 111111111110000 0 00
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 043190 845 --------------------------------------------------------------------------AVRFIG 850 (1492)
Q Consensus 845 --------------------------------------------------------------------------~~~ii~ 850 (1492)
-.++.|
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 023566
Q ss_pred EcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh-cCCCCCeeEEecChH
Q 043190 851 LSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRR 928 (1492)
Q Consensus 851 lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~ 928 (1492)
||||.+. .+++.++++.+...+ +..+|..-. ..+...+... ......+...+.. ...++++||||+|++
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~I----Pt~kp~~r~----~~~~~v~~t~-~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRI----PTNRPSQRR----HLPDEVFLTA-AAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEe----CCCCCccce----ecCCEEEeCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 6777654 334555555543211 111111100 0010111111 1111122233322 234678999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 043190 929 QTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT 1008 (1492)
Q Consensus 929 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT 1008 (1492)
.++.++..|.+ .++.+..+||.++..++..+. |+.+..+|+|||
T Consensus 485 ~se~L~~~L~~----------------------------------~gi~~~~Lhg~~~~rE~~ii~--~ag~~g~VlVAT 528 (656)
T PRK12898 485 ASERLSALLRE----------------------------------AGLPHQVLNAKQDAEEAAIVA--RAGQRGRITVAT 528 (656)
T ss_pred HHHHHHHHHHH----------------------------------CCCCEEEeeCCcHHHHHHHHH--HcCCCCcEEEEc
Confidence 99999988843 267788999997655555544 444555799999
Q ss_pred cccccccCCC---CcE-----EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1009 STLAWGVNLP---AHL-----VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1009 ~~l~~Gvdip---~~~-----~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++++||+||+ ++. +||+ |+ .+-+...|.||+||+||.| ++|.++.+++..+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~----~d------~P~s~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVIL----TE------RHDSARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEE----cC------CCCCHHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 9999999999 665 8887 33 2224778999999999988 8999999988754
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=267.63 Aligned_cols=362 Identities=26% Similarity=0.424 Sum_probs=243.2
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
|..+|.+.+..+ ..++..+|+|||.+|||.+-..+|-..++....+-+||++|+++|++|....+..+|....-.+...
T Consensus 512 Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 788999998887 4788999999999999999999999999888889999999999999999998888874332223333
Q ss_pred EcCCCCcchhc-cCCCcEEEECchhhhHhhhc-ccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCc
Q 043190 769 MTGDYTPDLMA-LLSADIIISTPEKWDGISRN-WHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 769 ~~g~~~~~~~~-~~~~~Iiv~Tpe~l~~l~~~-~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
+-|+++.+-+. .-+++|+|+-||.+..++-. .....+..+++++|+||+|.+|. +.|..++.++-.+ +
T Consensus 591 l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li---------~ 661 (1330)
T KOG0949|consen 591 LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI---------P 661 (1330)
T ss_pred hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc---------C
Confidence 44555443322 23789999999999888776 23456789999999999999986 5666677665433 6
Q ss_pred eEEEEEcCCCCChHHHHHHhcC-C-----cceeEecCCC--------------ccccCcE--------------------
Q 043190 846 VRFIGLSTALANAGDLADWLGV-G-----EIGLFNFKPS--------------VRPVPLE-------------------- 885 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~~l~~-~-----~~~~~~~~~~--------------~r~~~l~-------------------- 885 (1492)
..++++|||+.|+..+..|++. . +.....+... ....++.
T Consensus 662 CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s 741 (1330)
T KOG0949|consen 662 CPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSES 741 (1330)
T ss_pred CCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccC
Confidence 7899999999999999999971 1 1111111110 0000000
Q ss_pred ---EEEeccC-------------------Cccccccccc-----------------c--C---------------hh---
Q 043190 886 ---VHIQGYP-------------------GKFYCPRMNS-----------------M--N---------------KP--- 906 (1492)
Q Consensus 886 ---~~~~~~~-------------------~~~~~~~~~~-----------------~--~---------------~~--- 906 (1492)
.....+. ..++...... + + +.
T Consensus 742 ~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnk 821 (1330)
T KOG0949|consen 742 EDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNK 821 (1330)
T ss_pred CCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhh
Confidence 0000000 0000000000 0 0 00
Q ss_pred ----------------HHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCC--c------------------
Q 043190 907 ----------------AYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETP--R------------------ 948 (1492)
Q Consensus 907 ----------------~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~--~------------------ 948 (1492)
+...+ ......-|.|+|-..|..|+.+|..+.+.+...+.. .
T Consensus 822 qle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~ 901 (1330)
T KOG0949|consen 822 QLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDRE 901 (1330)
T ss_pred HhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 011234588999999988888775543321110000 0
Q ss_pred -------------------------c---cC----CCChHHHHHHHhhc--CcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 949 -------------------------Q---FL----GMPEEDLQMVLSQV--TDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 949 -------------------------~---~~----~~~~~~~~~~~~~~--~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
. |. ..+..+....-+.. .+..+...+-.|+++||+||+...|..|+
T Consensus 902 Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VE 981 (1330)
T KOG0949|consen 902 KTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVE 981 (1330)
T ss_pred HHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHH
Confidence 0 00 00001111111111 23456677788999999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
-.|+.|...||+||.+++-|||.|..+||+-|.. ..+.+..|.||+|||||.|||..|.++.+--+
T Consensus 982 vLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 982 VLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred HHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCc
Confidence 9999999999999999999999999999987542 45678899999999999999999998877544
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=280.50 Aligned_cols=322 Identities=20% Similarity=0.225 Sum_probs=200.5
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
+|+...|+|+|..+..... ++..++|.||||+|||.+++.++...+......+++|..||+++++++++++.+.+....
T Consensus 281 ~~~~~~p~p~Q~~~~~~~~-~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 281 LDNGYQPRQLQTLVDALPL-QPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred ccCCCCChHHHHHHHhhcc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 3444579999998754432 567899999999999999988887766555567999999999999999999887554432
Q ss_pred -CCEEEEEcCCCCcch-----------------------hcc-------CCCcEEEECchhhh-HhhhcccCccccCc--
Q 043190 763 -GKEMVEMTGDYTPDL-----------------------MAL-------LSADIIISTPEKWD-GISRNWHSRNYVKK-- 808 (1492)
Q Consensus 763 -g~~v~~~~g~~~~~~-----------------------~~~-------~~~~Iiv~Tpe~l~-~l~~~~~~~~~l~~-- 808 (1492)
..++...+|....+. ... .-++|+|||+.++. ..+.... .+++.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~lR~~~ 437 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFIRGFG 437 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHHHHHh
Confidence 245777777432110 000 12699999999864 3333211 12222
Q ss_pred --ccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcce-------eEecCC
Q 043190 809 --VGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIG-------LFNFKP 877 (1492)
Q Consensus 809 --i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~-------~~~~~~ 877 (1492)
-++|||||+|.+.......++.++..+.. ...++|+||||+|.. +.+.+-++..... ......
T Consensus 438 La~svvIiDEVHAyD~ym~~lL~~~L~~l~~------~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQ------AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred hccCeEEEechhhCCHHHHHHHHHHHHHHHh------cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 35899999998854333344444444322 256799999999862 2333322221000 000000
Q ss_pred C--ccccCcEEEEeccCCcccc--ccc--cc-cC-hhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 878 S--VRPVPLEVHIQGYPGKFYC--PRM--NS-MN-KPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 878 ~--~r~~~l~~~~~~~~~~~~~--~~~--~~-~~-~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
. ....++...-...+..... ... .. .. ..+...+.. ...++++||||||++.|+.+++.|.+...
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~------ 585 (878)
T PRK09694 512 VNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN------ 585 (878)
T ss_pred cccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC------
Confidence 0 0000000000000000000 000 00 01 122333332 35678999999999999999988854211
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH----HHHHHH-hcCC---ceEEEeccccccccCCCCc
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS----LVEELF-ANNK---IQVLVCTSTLAWGVNLPAH 1020 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~----~v~~~f-~~g~---~~vLvaT~~l~~Gvdip~~ 1020 (1492)
....+..+||+++..+|. .+++.| ++|+ .+|||||+++++|+|++ .
T Consensus 586 -------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~ 639 (878)
T PRK09694 586 -------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-F 639 (878)
T ss_pred -------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-C
Confidence 024589999999999994 566677 6666 47999999999999996 5
Q ss_pred EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 1021 ~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+++|. ...|++.++||+||+||.+.
T Consensus 640 DvlIt------------dlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 640 DWLIT------------QLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEE------------CCCCHHHHHHHHhccCCCCC
Confidence 67775 34578999999999999874
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=277.26 Aligned_cols=331 Identities=18% Similarity=0.181 Sum_probs=206.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+ .|+++|..+...+. .|+ |..+.||+|||++|.+|++..... +..+.+++|++.||.|.++.+...+ ..+|+
T Consensus 76 g~-~p~~vQl~~~~~l~-~G~--Iaem~TGeGKTL~a~lp~~l~al~--G~~v~VvTpt~~LA~qd~e~~~~l~-~~lGl 148 (790)
T PRK09200 76 GM-RPYDVQLIGALVLH-EGN--IAEMQTGEGKTLTATMPLYLNALE--GKGVHLITVNDYLAKRDAEEMGQVY-EFLGL 148 (790)
T ss_pred CC-CCchHHHHhHHHHc-CCc--eeeecCCCcchHHHHHHHHHHHHc--CCCeEEEeCCHHHHHHHHHHHHHHH-hhcCC
Confidence 66 58999998888765 554 999999999999999999855443 7899999999999999999888755 44599
Q ss_pred EEEEEcCCCC-cc-hhccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc--CCCCcc---------
Q 043190 765 EMVEMTGDYT-PD-LMALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL--GAERGP--------- 826 (1492)
Q Consensus 765 ~v~~~~g~~~-~~-~~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l--~~~~g~--------- 826 (1492)
+|+.+.|+.+ .. .+....++|+++||+++ +.+..+.. ....++.+.++|+||||.+ ++.+.|
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999876 33 33445789999999997 32332211 1235678999999999954 222222
Q ss_pred --HHHHHHHH-HHHhhhc----cCCceEEEEEcCC----------CCC---h--HHHHHHhc----------CCcc----
Q 043190 827 --ILEVIVSR-MRYISSQ----TERAVRFIGLSTA----------LAN---A--GDLADWLG----------VGEI---- 870 (1492)
Q Consensus 827 --~~~~i~~~-l~~~~~~----~~~~~~ii~lSAT----------l~~---~--~~~~~~l~----------~~~~---- 870 (1492)
.+-....+ .+.+... .....+.+.++.. +++ . ..+..|+. .+..
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 11111111 1111100 0001122222210 001 0 01111111 0000
Q ss_pred --eeEec-CCCccccC-------------------c------------------EEEEeccC------------------
Q 043190 871 --GLFNF-KPSVRPVP-------------------L------------------EVHIQGYP------------------ 892 (1492)
Q Consensus 871 --~~~~~-~~~~r~~~-------------------l------------------~~~~~~~~------------------ 892 (1492)
.+... ....|..+ + ...+.|+.
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 00000 00000000 0 00001110
Q ss_pred ---------------CccccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 893 ---------------GKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 893 ---------------~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
...+.... .....+...+.. +..+.|+||||+|++.++.++..|.+
T Consensus 389 ~~IPt~kp~~r~d~~~~i~~~~~-~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~----------------- 450 (790)
T PRK09200 389 VQIPTNRPIIRIDYPDKVFVTLD-EKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE----------------- 450 (790)
T ss_pred EECCCCCCcccccCCCeEEcCHH-HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH-----------------
Confidence 00111100 001112222322 35688999999999999999987743
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC---CCcE-----EEEecce
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL---PAHL-----VIIKGTE 1028 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi---p~~~-----~VI~~~~ 1028 (1492)
.++.+..+||.+...++..+..+++.| +|+|||++++||+|+ |++. +||+
T Consensus 451 -----------------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--- 508 (790)
T PRK09200 451 -----------------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG--- 508 (790)
T ss_pred -----------------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe---
Confidence 267789999999999999888888777 799999999999999 6887 9997
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|+ .+-+...|.||+||+||.| .+|.++.+++..+
T Consensus 509 -~d------~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 509 -TE------RMESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred -cc------CCCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 33 2225789999999999988 8999999988654
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=293.92 Aligned_cols=304 Identities=16% Similarity=0.107 Sum_probs=195.6
Q ss_pred hhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 681 EALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 681 ~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
+..+|+ .|+++|.++++.++ .|+|++++||||||||..+ +++...+.. ++.+++|++||++||.|+++.+.... .
T Consensus 74 ~~~~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~f~-l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~-~ 148 (1176)
T PRK09401 74 KKKTGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTTFG-LVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFG-E 148 (1176)
T ss_pred HHhcCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHHHH-HHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHh-h
Confidence 334477 69999999999998 7899999999999999744 444444433 47899999999999999999998854 4
Q ss_pred ccCCEEEEEcCCCCc---chh------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C-------
Q 043190 761 QLGKEMVEMTGDYTP---DLM------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E------- 823 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~---~~~------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~------- 823 (1492)
..+..+..+.|.... +.. ....++|+|+||+++...+.. ....+++++|+||||.+.+ .
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccchhhHH
Confidence 447777666654321 111 113589999999998766552 1245699999999997753 1
Q ss_pred ----Cc-cHHHHHHHHHHH-------------hhh----ccCCceEEEEEcCCCCCh-HH---HHHHhcCCcceeEecCC
Q 043190 824 ----RG-PILEVIVSRMRY-------------ISS----QTERAVRFIGLSTALANA-GD---LADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 824 ----~g-~~~~~i~~~l~~-------------~~~----~~~~~~~ii~lSATl~~~-~~---~~~~l~~~~~~~~~~~~ 877 (1492)
+. ..++.++..++. +.. ......|++++|||.+.. .. +.+.++.. ...
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~------v~~ 298 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFE------VGS 298 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEE------ecC
Confidence 21 234444433321 111 011267899999998642 11 12222211 111
Q ss_pred Cccc-cCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHH---HHHHHHHHHHHHhcCCCCcccCCC
Q 043190 878 SVRP-VPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ---TRLTALDLIQFAASDETPRQFLGM 953 (1492)
Q Consensus 878 ~~r~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~---~~~~a~~L~~~~~~~~~~~~~~~~ 953 (1492)
.... -.+...+... ......+...+... +.++||||+++.. ++.++..|..
T Consensus 299 ~~~~~rnI~~~yi~~---------~~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~-------------- 353 (1176)
T PRK09401 299 PVFYLRNIVDSYIVD---------EDSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLED-------------- 353 (1176)
T ss_pred cccccCCceEEEEEc---------ccHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHH--------------
Confidence 1000 0111111100 00111122222222 3579999999877 8888877743
Q ss_pred ChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecce
Q 043190 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTE 1028 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~ 1028 (1492)
.++.+..+||+| + + .++.|++|+++|||| |++++||+|+|+ +++||+
T Consensus 354 --------------------~gi~v~~~hg~l---~-~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~--- 405 (1176)
T PRK09401 354 --------------------LGINAELAISGF---E-R-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF--- 405 (1176)
T ss_pred --------------------CCCcEEEEeCcH---H-H-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE---
Confidence 267889999999 2 2 349999999999999 689999999999 899997
Q ss_pred eeeCccCccccCC-HHHHHHhhcccCC
Q 043190 1029 YYDGKTKRYVDFP-ITDILQMMGRAGR 1054 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~-~~~~~Qr~GRagR 1054 (1492)
|+.+..+ +.+. ...+.||+||+-+
T Consensus 406 -y~vP~~~-~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 406 -YGVPKFK-FSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred -eCCCCEE-EeccccccCHHHHHHHHh
Confidence 5544322 1111 3578899999854
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=292.00 Aligned_cols=325 Identities=22% Similarity=0.317 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
+++++|.+++..+++ +|+++++|||+|||+++.+++...+. .+++++||++|+++|+.|+.+.+++.+... +.++.
T Consensus 15 ~~r~yQ~~~~~~~l~--~n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~ 90 (773)
T PRK13766 15 EARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIV 90 (773)
T ss_pred CccHHHHHHHHHHhc--CCeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEE
Confidence 589999999998873 39999999999999999999888774 357899999999999999999888765332 45788
Q ss_pred EEcCCCCcchh--ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 768 EMTGDYTPDLM--ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 768 ~~~g~~~~~~~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
.++|+.....+ ...+++|+|+||+.+...+.. ....+.+++++||||||++.... .+..+..+++. ....
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~--~~~~i~~~~~~----~~~~ 162 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY--AYVYIAERYHE----DAKN 162 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc--cHHHHHHHHHh----cCCC
Confidence 89998765432 234789999999987544432 23347789999999999875432 22333333322 2346
Q ss_pred eEEEEEcCCCCC----hHHHHHHhcCCcceeEe-cCCCccc----cCcEEEEe---------------------------
Q 043190 846 VRFIGLSTALAN----AGDLADWLGVGEIGLFN-FKPSVRP----VPLEVHIQ--------------------------- 889 (1492)
Q Consensus 846 ~~ii~lSATl~~----~~~~~~~l~~~~~~~~~-~~~~~r~----~~l~~~~~--------------------------- 889 (1492)
+++++||||+.. ...+...++.....+.. +.+...+ ........
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 789999999854 23344444433221110 0000000 00000000
Q ss_pred ccC--Cc-----------------------c--------------------------------cccccc--c--------
Q 043190 890 GYP--GK-----------------------F--------------------------------YCPRMN--S-------- 902 (1492)
Q Consensus 890 ~~~--~~-----------------------~--------------------------------~~~~~~--~-------- 902 (1492)
+.. .. . +..... .
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000 00 0 000000 0
Q ss_pred ---------------------cChh----HHHHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 043190 903 ---------------------MNKP----AYAAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 903 ---------------------~~~~----~~~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
...+ +...+ ....+++++||||++++.|..++..|...
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-------------- 388 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-------------- 388 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--------------
Confidence 0000 00011 11146788999999999999988877321
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeec--------CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEec
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHH--------AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKG 1026 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h--------~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~ 1026 (1492)
+..+..+| +++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 389 --------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~- 447 (773)
T PRK13766 389 --------------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF- 447 (773)
T ss_pred --------------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE-
Confidence 22333444 4599999999999999999999999999999999999999998
Q ss_pred ceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1027 TEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|++. .+...|+||+||+||.| .|.+++++....
T Consensus 448 ---yd~~------~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 448 ---YEPV------PSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred ---eCCC------CCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 6643 36789999999999975 588888887654
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=271.09 Aligned_cols=321 Identities=17% Similarity=0.225 Sum_probs=195.5
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
++|+|.|++..+. -++..++.++||+|||++|.+|++..... +..++|++|+++||.|.++.+.. +...+|++|+.
T Consensus 69 lrpydVQlig~l~-l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~-l~~~LGLsv~~ 144 (762)
T TIGR03714 69 MFPYDVQVLGAIV-LHQGNIAEMKTGEGKTLTATMPLYLNALT--GKGAMLVTTNDYLAKRDAEEMGP-VYEWLGLTVSL 144 (762)
T ss_pred CCccHHHHHHHHH-hcCCceeEecCCcchHHHHHHHHHHHhhc--CCceEEeCCCHHHHHHHHHHHHH-HHhhcCCcEEE
Confidence 4566666665543 22336999999999999999998766554 66799999999999999988766 44556999988
Q ss_pred EcCCC-----Ccc-hhccCCCcEEEECchhh-hHhhhcc----cCccccCcccEEEEecccccC--CCCcc---------
Q 043190 769 MTGDY-----TPD-LMALLSADIIISTPEKW-DGISRNW----HSRNYVKKVGLMILDEIHLLG--AERGP--------- 826 (1492)
Q Consensus 769 ~~g~~-----~~~-~~~~~~~~Iiv~Tpe~l-~~l~~~~----~~~~~l~~i~liViDEaH~l~--~~~g~--------- 826 (1492)
..++. ..+ .+...+++|+++||+++ .+.++.. .....++.+.++|+||||.+. +.+.|
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~ 224 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRV 224 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCcc
Confidence 76642 211 22335789999999998 3334321 122346789999999999651 12211
Q ss_pred ---HHHHHHHHHHHhhhc----cCCceEEEEE------------------------------------------------
Q 043190 827 ---ILEVIVSRMRYISSQ----TERAVRFIGL------------------------------------------------ 851 (1492)
Q Consensus 827 ---~~~~i~~~l~~~~~~----~~~~~~ii~l------------------------------------------------ 851 (1492)
.+..+....+.+... .....+-+.+
T Consensus 225 ~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~ 304 (762)
T TIGR03714 225 QSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVT 304 (762)
T ss_pred chHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 111111111111100 0001112222
Q ss_pred -------------------------------------------------------------cCCCCC-hHHHHHHhcCCc
Q 043190 852 -------------------------------------------------------------STALAN-AGDLADWLGVGE 869 (1492)
Q Consensus 852 -------------------------------------------------------------SATl~~-~~~~~~~l~~~~ 869 (1492)
|+|... .+++.+..+..
T Consensus 305 ~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~- 383 (762)
T TIGR03714 305 NGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS- 383 (762)
T ss_pred CCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCC-
Confidence 222110 00011100000
Q ss_pred ceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHh-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 870 IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 870 ~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
++. -|+.+|.. ....+...+...... ...+...+. .+..+.|+||||+|+..++.++..|.+
T Consensus 384 --v~~-IPt~kp~~----r~d~~d~i~~~~~~K-~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~--------- 446 (762)
T TIGR03714 384 --VVK-IPTNKPII----RIDYPDKIYATLPEK-LMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR--------- 446 (762)
T ss_pred --EEE-cCCCCCee----eeeCCCeEEECHHHH-HHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH---------
Confidence 000 00111100 000111111111000 111222222 235678999999999999998887743
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC---------C
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP---------A 1019 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip---------~ 1019 (1492)
.+..+..+||.+++.+|..+.++++.| +|+|||++++||+|+| +
T Consensus 447 -------------------------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GG 499 (762)
T TIGR03714 447 -------------------------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGG 499 (762)
T ss_pred -------------------------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCC
Confidence 256788999999999998888888777 7999999999999999 8
Q ss_pred cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1020 HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1020 ~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.+|+. |+.+. ...+ .||+||+||.| ++|.++.+++..+
T Consensus 500 L~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 500 LAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred eEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 899987 44332 1334 99999999988 9999999988755
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=264.75 Aligned_cols=336 Identities=19% Similarity=0.191 Sum_probs=205.3
Q ss_pred EEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh-------cc
Q 043190 708 LLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM-------AL 780 (1492)
Q Consensus 708 li~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~-------~~ 780 (1492)
++.||||||||.+|+.++...+.. +++++|++|+++|+.|+++++++.| |.++..++|+.+...+ ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999998777666654 7899999999999999999988766 6678889988765432 12
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC--CCCccHHHH-HHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG--AERGPILEV-IVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~--~~~g~~~~~-i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..++|+|+|+..+. ..++++++|||||+|... ...++.+.. -+..++. ...+.++|++|||+ .
T Consensus 75 g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra----~~~~~~vil~SATP-s 140 (505)
T TIGR00595 75 GEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA----KKFNCPVVLGSATP-S 140 (505)
T ss_pred CCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH----HhcCCCEEEEeCCC-C
Confidence 35799999997541 237789999999999764 233443321 0122221 12478899999995 5
Q ss_pred hHHHHHHhcCCcceeEecCC--CccccCcEEEEeccCCccccccccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHH
Q 043190 858 AGDLADWLGVGEIGLFNFKP--SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTA 934 (1492)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~--~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a 934 (1492)
.+.+....... ........ ..++.+ .+.+........ .......++..+... ..++++|||+|++..+-.+.
T Consensus 141 les~~~~~~g~-~~~~~l~~r~~~~~~p-~v~vid~~~~~~---~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~ 215 (505)
T TIGR00595 141 LESYHNAKQKA-YRLLVLTRRVSGRKPP-EVKLIDMRKEPR---QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLL 215 (505)
T ss_pred HHHHHHHhcCC-eEEeechhhhcCCCCC-eEEEEecccccc---cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeE
Confidence 55544432211 11111111 111111 222222111110 012233445555433 56789999999998754433
Q ss_pred HHHHHHHhcCCCCc-------------------------ccC----------CCChHHHHHHHhhcCcHHHHHH-hccce
Q 043190 935 LDLIQFAASDETPR-------------------------QFL----------GMPEEDLQMVLSQVTDQNLRQT-LQFGI 978 (1492)
Q Consensus 935 ~~L~~~~~~~~~~~-------------------------~~~----------~~~~~~~~~~~~~~~~~~l~~~-~~~~v 978 (1492)
..=|.....+.... ... +...+.+. +.+... .+.++
T Consensus 216 C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~--------e~l~~~fp~~~v 287 (505)
T TIGR00595 216 CRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE--------EELAKLFPGARI 287 (505)
T ss_pred hhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHH--------HHHHhhCCCCcE
Confidence 22222111111000 000 01112222 223333 25689
Q ss_pred EeecCCCCHHHH--HHHHHHHhcCCceEEEeccccccccCCCCcEEEE--ecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 979 GLHHAGLNDKDR--SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVII--KGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 979 ~~~h~~l~~~~R--~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI--~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
..+|++++...+ +.+++.|++|+.+|||+|+++++|+|+|++++|+ +.......+.-+..+.....|.|++|||||
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 999999987766 8999999999999999999999999999999764 311111111111111135789999999999
Q ss_pred CCCCCceEEEEEecCCcHHHHHHh
Q 043190 1055 PQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
.+ ..|.+++.+..++...+..+
T Consensus 368 ~~--~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 368 AE--DPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred CC--CCCEEEEEeCCCCCHHHHHH
Confidence 76 78999998877765544433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=264.64 Aligned_cols=322 Identities=16% Similarity=0.157 Sum_probs=206.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHH-HHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il-~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+. |+++|..+...+. .|+ |..++||+|||++|.+|++ ..+. +..+.+++|++.||.|.++.+...+ ..+|
T Consensus 54 g~~-p~~vQlig~~~l~-~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~-~~LG 125 (745)
T TIGR00963 54 GMR-PFDVQLIGGIALH-KGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVY-RFLG 125 (745)
T ss_pred CCC-ccchHHhhhhhhc-CCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHh-ccCC
Confidence 665 7888888877765 444 9999999999999999995 4543 5679999999999999999887754 5559
Q ss_pred CEEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhcccC----ccccCcccEEEEecccccC--CCCccHH-------
Q 043190 764 KEMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLLG--AERGPIL------- 828 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l~--~~~g~~~------- 828 (1492)
++++.++|+.....+ ....++|+++||++| .++++.... ...++.++++||||+|.+. +.|.+.+
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~ 205 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEK 205 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCC
Confidence 999999998775433 334689999999998 556665321 2356889999999999653 1121110
Q ss_pred -HHHHHHHHHhhhccC--------CceE----------------------------------------------------
Q 043190 829 -EVIVSRMRYISSQTE--------RAVR---------------------------------------------------- 847 (1492)
Q Consensus 829 -~~i~~~l~~~~~~~~--------~~~~---------------------------------------------------- 847 (1492)
..+......+...+. ...+
T Consensus 206 ~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 285 (745)
T TIGR00963 206 STELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVR 285 (745)
T ss_pred chHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 011111111110000 0111
Q ss_pred ---------------------------------------------------------EEEEcCCCCC-hHHHHHHhcCCc
Q 043190 848 ---------------------------------------------------------FIGLSTALAN-AGDLADWLGVGE 869 (1492)
Q Consensus 848 ---------------------------------------------------------ii~lSATl~~-~~~~~~~l~~~~ 869 (1492)
+.|||+|... .+++.+..+.+.
T Consensus 286 d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~v 365 (745)
T TIGR00963 286 DGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEV 365 (745)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCE
Confidence 1222222111 011111111100
Q ss_pred ceeEecCCCccccCcEEEEeccCCccccccccccChhHHHH-HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 870 IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA-ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 870 ~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
.. -|+.+|.. ....+...+...... ...+... ...+..+.|+||||+|...++.++..|.+.
T Consensus 366 ---v~-IPtnkp~~----R~d~~d~i~~t~~~k-~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~-------- 428 (745)
T TIGR00963 366 ---VV-VPTNRPVI----RKDLSDLVYKTEEEK-WKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER-------- 428 (745)
T ss_pred ---EE-eCCCCCee----eeeCCCeEEcCHHHH-HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--------
Confidence 00 00111100 001111111111111 1112222 233567899999999999999999877442
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCC-------cE
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA-------HL 1021 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~-------~~ 1021 (1492)
+.....+||+ +.+|+..+..|+.+...|+|||++++||+||+. ..
T Consensus 429 --------------------------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 429 --------------------------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred --------------------------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 5567889998 788999999999999999999999999999998 55
Q ss_pred EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1022 VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1022 ~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+||. ++ .+-+...+.|+.||+||.| .+|.+..+++..+
T Consensus 481 ~VI~----t~------~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVIG----TE------RHESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred EEEe----cC------CCCcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 8886 22 2335789999999999998 8999999988765
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=279.57 Aligned_cols=271 Identities=29% Similarity=0.337 Sum_probs=190.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEe-------eCCch------hHHHHHhh---
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-------SEPNF------AARNELLS--- 67 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~-------~~~~~------~~~~~~~~--- 67 (1492)
.++++|+|+||||+||+++|+.|++.....++.++..++|||||.+++..- .+... ......+.
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 578999999999999999999999977677888899999999999877532 11110 00000000
Q ss_pred ----H--H---------------------HHHHHHHHH--hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCC
Q 043190 68 ----E--I---------------------CYKKVVDSL--RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDT 118 (1492)
Q Consensus 68 ----~--~---------------------~~~~~~~~~--~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~ 118 (1492)
+ . -...+...+ .+.-|+++|+.||++|+..|..+...- ......
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ld-------l~~~~~ 409 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLD-------LVLTEE 409 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccc-------cccCCc
Confidence 0 0 001123333 345699999999999999998876321 111111
Q ss_pred c-h-hhHHHHHHHhhc---------CchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcE
Q 043190 119 H-P-QLSLIKKDVMKS---------RNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAH 187 (1492)
Q Consensus 119 ~-~-~~~~~~~~~~~~---------~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~ 187 (1492)
. . -...+.+++... .-..+.++|..|+|+|||||.|..|..||.+|..|.++|++||.|++.|+|+|+.
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 1 1 112233222222 2256788999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccceecCCCCC-cccCchhhhhhccCCCCCCccceEEEEeCCccH--HHHHHH-hcCCCccccchhHhHHHHHHH
Q 043190 188 TVVIKGTQLYDPKAGG-WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL--AYYLRL-LTSQLPIESQFISSLKDNLNA 263 (1492)
Q Consensus 188 ~vVI~~~~~~~~~~~~-~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~--~~~~~~-~~~~~~ies~l~~~l~~~l~~ 263 (1492)
+||+.+...+|+.... .+...|.||.|||||.|.|..|.+|++...... .....+ ...+.+..|++...+...+|-
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnl 569 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNL 569 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHhh
Confidence 9999999999986644 456679999999999999999999999544332 222222 345568888888776666664
Q ss_pred HHHhCcccCHHHHHHHhhhhhh
Q 043190 264 EVALGTVTNVKEACAWLGYTYL 285 (1492)
Q Consensus 264 ei~~~~i~~~~~~~~~~~~t~~ 285 (1492)
. .+...+.+...+..+|.
T Consensus 570 l----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 570 L----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred h----hhcccCcHHHHHHhhHH
Confidence 3 23333444445555553
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=227.28 Aligned_cols=303 Identities=19% Similarity=0.247 Sum_probs=204.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC-ceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD-MKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~-~~~l~i~P~r~La~q~~ 751 (1492)
|++++++++- ||++|..+|.+|+|..+ -|.+++..|..|.|||.+|.++-++.+...++ ..+++++.||+||.|+.
T Consensus 49 lkpellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~ 127 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQIS 127 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHH
Confidence 4456777776 99999999999999877 58999999999999999999999998875433 47899999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcc--hhcc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPD--LMAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~--~~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
+++.+.-....+.++....|+.... ...+ +-++|+|+|||++..+.|+. ...+++++.+|+|||+.+.+.- .
T Consensus 128 ~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k--~l~lk~vkhFvlDEcdkmle~l--D- 202 (387)
T KOG0329|consen 128 KEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR--SLNLKNVKHFVLDECDKMLEQL--D- 202 (387)
T ss_pred HHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc--cCchhhcceeehhhHHHHHHHH--H-
Confidence 9887743344578999999987643 2223 25699999999999999974 4458999999999999653210 0
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccc-cChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNS-MNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~-~~~~ 906 (1492)
....+..+...++...|+..+|||+++ ..-++..+--++..++.-... .+. +.+. ..+|...... .++.
T Consensus 203 --MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~----KLt--LHGL-qQ~YvkLke~eKNrk 273 (387)
T KOG0329|consen 203 --MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA----KLT--LHGL-QQYYVKLKENEKNRK 273 (387)
T ss_pred --HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh----hhh--hhhH-HHHHHhhhhhhhhhh
Confidence 111223334456788999999999976 333443332222222110000 000 0010 0111111111 1111
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
++ .+.....-.+++||+.|... | +
T Consensus 274 l~-dLLd~LeFNQVvIFvKsv~R-------l------------------------------------------------~ 297 (387)
T KOG0329|consen 274 LN-DLLDVLEFNQVVIFVKSVQR-------L------------------------------------------------S 297 (387)
T ss_pred hh-hhhhhhhhcceeEeeehhhh-------h------------------------------------------------h
Confidence 11 12222334567777655421 0 0
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
| ..+ +|||+.+++|+|+..++.|++ ||-+. +..+|+||+|||||-| ..|.++.+
T Consensus 298 ----------f---~kr-~vat~lfgrgmdiervNi~~N----Ydmp~------~~DtYlHrv~rAgrfG--tkglaitf 351 (387)
T KOG0329|consen 298 ----------F---QKR-LVATDLFGRGMDIERVNIVFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITF 351 (387)
T ss_pred ----------h---hhh-hHHhhhhccccCcccceeeec----cCCCC------CchHHHHHhhhhhccc--cccceeeh
Confidence 2 123 899999999999999999998 44221 3789999999999977 99999999
Q ss_pred ecCCcHHH
Q 043190 1067 VHEPKKSF 1074 (1492)
Q Consensus 1067 ~~~~~~~~ 1074 (1492)
++..+...
T Consensus 352 vs~e~da~ 359 (387)
T KOG0329|consen 352 VSDENDAK 359 (387)
T ss_pred hcchhhHH
Confidence 98766544
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=219.49 Aligned_cols=315 Identities=22% Similarity=0.282 Sum_probs=217.3
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+++|.|+.+-..++ ++.++.+|.|-||+|||......|-..+.+ |+++.+.+|+...|.+.+.++++.|. +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~---~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFS---NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhc---cC
Confidence 68999998776654 567899999999999999877777777765 89999999999999999999998885 45
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.+..++|+..... .++++|+|..++..+ -+.++++||||+|...-...+.+...+..-++ .
T Consensus 172 ~I~~Lyg~S~~~f----r~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark------~ 232 (441)
T COG4098 172 DIDLLYGDSDSYF----RAPLVVATTHQLLRF---------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK------K 232 (441)
T ss_pred CeeeEecCCchhc----cccEEEEehHHHHHH---------HhhccEEEEeccccccccCCHHHHHHHHHhhc------c
Confidence 7888999876543 378999998865432 23678999999997743344456655554432 3
Q ss_pred ceEEEEEcCCCCChHHHHHHhcCCcceeEecCC--CccccCcE--EEEeccCCccccccccccChhHHHHHhhc-CCCCC
Q 043190 845 AVRFIGLSTALANAGDLADWLGVGEIGLFNFKP--SVRPVPLE--VHIQGYPGKFYCPRMNSMNKPAYAAICTH-SPTKP 919 (1492)
Q Consensus 845 ~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~--~~r~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 919 (1492)
..-.|.||||+++ .+.+-+............ ..+|.|+. +.+..+..+ .. ...+...+...+... ..+.|
T Consensus 233 ~g~~IylTATp~k--~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~--l~-r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 233 EGATIYLTATPTK--KLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKK--LQ-RNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cCceEEEecCChH--HHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHH--hh-hccCCHHHHHHHHHHHhcCCc
Confidence 4557999999864 333222222111121111 12222222 222111110 00 011112233444433 56789
Q ss_pred eeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc
Q 043190 920 VLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN 999 (1492)
Q Consensus 920 ~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 999 (1492)
++||+|+....+.++..|.+... ...++..|+. ..+|.+..++|++
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~--------------------------------~~~i~~Vhs~--d~~R~EkV~~fR~ 353 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLP--------------------------------KETIASVHSE--DQHRKEKVEAFRD 353 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCC--------------------------------ccceeeeecc--CccHHHHHHHHHc
Confidence 99999999999999887744322 2345677775 3678889999999
Q ss_pred CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1000 NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1000 g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|++++||+|++++|||++|+++|.+.|... .-++.+.++|++||+||.-....|..+.|.....+.
T Consensus 354 G~~~lLiTTTILERGVTfp~vdV~Vlgaeh--------~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 354 GKITLLITTTILERGVTFPNVDVFVLGAEH--------RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred CceEEEEEeehhhcccccccceEEEecCCc--------ccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 999999999999999999999998875421 124688999999999997666778877776554443
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=259.34 Aligned_cols=317 Identities=19% Similarity=0.278 Sum_probs=242.2
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhc---C--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYH---T--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~---~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
..+.+-|+|. -||-|..|+..+.. + ..|=+|||.-|-|||.+|+-+++..... ++++.++|||--||+|.++
T Consensus 585 ~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 585 EEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred HHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHhHHHHHH
Confidence 4566666776 79999999998762 2 2478999999999999999999998875 7999999999999999999
Q ss_pred HHHHHhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCc
Q 043190 753 DWKDRLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERG 825 (1492)
Q Consensus 753 ~~~~~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g 825 (1492)
.|+++|..+ +++|..+..-.+.... ...+.||+|+|.- ++.+ ...+++++++||||-|+.|-..
T Consensus 662 tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~k---dv~FkdLGLlIIDEEqRFGVk~- 732 (1139)
T COG1197 662 TFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSK---DVKFKDLGLLIIDEEQRFGVKH- 732 (1139)
T ss_pred HHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCC---CcEEecCCeEEEechhhcCccH-
Confidence 999999988 8898888664433211 2236799999974 4443 3447899999999999775321
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
-.+++.+ ..++.++-||||+-.-.--....|+.+-.++.. |+....|+...+..++....
T Consensus 733 ------KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T-PP~~R~pV~T~V~~~d~~~i--------- 792 (1139)
T COG1197 733 ------KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT-PPEDRLPVKTFVSEYDDLLI--------- 792 (1139)
T ss_pred ------HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccC-CCCCCcceEEEEecCChHHH---------
Confidence 2233332 348899999999755444445566666555553 34444666666554322111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.-..+.+...+|++-...|..+..+..+..|.+..+ ...|++-||.|
T Consensus 793 -reAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--------------------------------EarI~vaHGQM 839 (1139)
T COG1197 793 -REAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--------------------------------EARIAVAHGQM 839 (1139)
T ss_pred -HHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--------------------------------ceEEEEeecCC
Confidence 112334557789999999999999999998877643 35799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEe-cceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK-GTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~-~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
+..+-+.++..|-+|+.+|||||.+.+.|||+|+.+.+|. .. --+..+++.|..||+||.. ..|.||
T Consensus 840 ~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A----------D~fGLsQLyQLRGRVGRS~--~~AYAY 907 (1139)
T COG1197 840 RERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA----------DKFGLAQLYQLRGRVGRSN--KQAYAY 907 (1139)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc----------ccccHHHHHHhccccCCcc--ceEEEE
Confidence 9999999999999999999999999999999999876653 22 1235899999999999965 899999
Q ss_pred EEecCCc
Q 043190 1065 ILVHEPK 1071 (1492)
Q Consensus 1065 ~l~~~~~ 1071 (1492)
.++.+.+
T Consensus 908 fl~p~~k 914 (1139)
T COG1197 908 FLYPPQK 914 (1139)
T ss_pred EeecCcc
Confidence 9998654
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=275.30 Aligned_cols=283 Identities=17% Similarity=0.107 Sum_probs=181.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
..|+++|.++++.++ .|++++++||||||||. |.+++...+.. .+.+++|++||++||.|+++.+...... .|+.+
T Consensus 77 ~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~~-~~i~~ 152 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK-KGKRCYIILPTTLLVIQVAEKISSLAEK-AGVGT 152 (1171)
T ss_pred CCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCHHHHHHHHHHHHHHHHHh-cCCce
Confidence 369999999999998 78999999999999997 55566555443 3789999999999999999999885443 35443
Q ss_pred ---EEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C-----------C
Q 043190 767 ---VEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E-----------R 824 (1492)
Q Consensus 767 ---~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~-----------~ 824 (1492)
+.++|+.+...+. ..+++|+|+||+++...+.+.. .+++++|+||||.+.+ . +
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~vd~il~llGF 227 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNVDKLLKLLGF 227 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccHHHHHHHcCC
Confidence 3577877654321 1248999999998866555411 1899999999998754 1 2
Q ss_pred cc-HHHHHHHHHH---------------HhhhccCCce--EEEEEcCCC-CChHHHHHHhcCCcceeEecCCCcccc-Cc
Q 043190 825 GP-ILEVIVSRMR---------------YISSQTERAV--RFIGLSTAL-ANAGDLADWLGVGEIGLFNFKPSVRPV-PL 884 (1492)
Q Consensus 825 g~-~~~~i~~~l~---------------~~~~~~~~~~--~ii~lSATl-~~~~~~~~~l~~~~~~~~~~~~~~r~~-~l 884 (1492)
.. .++.++..++ ......+... .++++|||. |.... ..++.. ... +......... .+
T Consensus 228 ~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r~-ll~-~~v~~~~~~~r~I 304 (1171)
T TIGR01054 228 SEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFRE-LLG-FEVGGGSDTLRNV 304 (1171)
T ss_pred CHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHccc-ccc-eEecCccccccce
Confidence 11 2333322211 1111122233 367789994 43111 111110 000 1111110000 11
Q ss_pred EEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecCh---HHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHH
Q 043190 885 EVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSR---RQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961 (1492)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~---~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1492)
..... .. ......+...+... +.++||||+++ +.|+.++..|.+
T Consensus 305 ~~~~~--------~~-~~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~---------------------- 351 (1171)
T TIGR01054 305 VDVYV--------ED-EDLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLEN---------------------- 351 (1171)
T ss_pred EEEEE--------ec-ccHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHh----------------------
Confidence 11110 00 00011122223322 46799999999 888888877733
Q ss_pred HhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecceeeeCcc
Q 043190 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTEYYDGKT 1034 (1492)
Q Consensus 962 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~~~~~~~ 1034 (1492)
.++.+..+||+++. .+++.|++|+++|||| |++++||+|+|+ +++||+ |+.|.
T Consensus 352 ------------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~----~~~P~ 409 (1171)
T TIGR01054 352 ------------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF----LGVPK 409 (1171)
T ss_pred ------------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE----ECCCC
Confidence 26778999999963 6899999999999999 589999999999 799997 65554
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=273.12 Aligned_cols=267 Identities=17% Similarity=0.215 Sum_probs=172.2
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc-hh------------HHHHHhhHHHH
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-FA------------ARNELLSEICY 71 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~-~~------------~~~~~~~~~~~ 71 (1492)
+++.|+|+||||++|++++++||+...+..++ .....|+.++... +...... .. .....+....+
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVV-NPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEE-CCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 56799999999999999999999865333333 2445677666532 2211100 00 00111122223
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh---cccEEEE
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF---GLAVGVH 148 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~gv~~h 148 (1492)
..+...+..++++|||||||+.|+.++..|.+...+..... . . .....+......+.....+. ...+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRS-----P-S-IAVDAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcccc-----c-c-ccchhhhhhhccccchhccccccceeeeec
Confidence 34455556788999999999999999999987543210000 0 0 00000001000111111111 2347899
Q ss_pred cCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEE
Q 043190 149 HAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 149 hagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
||+|++++|..||+.|++|.+++||||++|++|||+|++++||+ |+. +.+..+|+||+|||||. .+..+.++
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gs---P~sVas~LQRiGRAGR~-~gg~s~gl 379 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VAT---PLSVASGLQRIGRAGHQ-VGGVSKGL 379 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCC---CCCHHHHHHHhCCCCCC-CCCccEEE
Confidence 99999999999999999999999999999999999999999996 443 23667899999999997 45567777
Q ss_pred EEeCCcc-HHH----HHHHhcCC-Cccc--cchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhh
Q 043190 229 IITSHDK-LAY----YLRLLTSQ-LPIE--SQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRM 289 (1492)
Q Consensus 229 ~~~~~~~-~~~----~~~~~~~~-~~ie--s~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~ 289 (1492)
++..+.+ ... ...++... +++. ..-...|..|+.+.++.+ -.+.++.++.++.+|.|..+
T Consensus 380 i~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~-~~~~d~l~~~vrra~pf~~L 447 (1490)
T PRK09751 380 FFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMD-ALQVDEWYSRVRRAAPWKDL 447 (1490)
T ss_pred EEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHhhccCCcccC
Confidence 6665432 111 22233322 2332 233457899999988865 56689999999999988854
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=269.48 Aligned_cols=258 Identities=19% Similarity=0.228 Sum_probs=174.0
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCC----CCceEeecCCc-ccccceEEEEEeeCCch-hHHHHHhhHHHHHHHHHHH
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNP----EMGLFFFDSSY-RPIPLAQQYIGISEPNF-AARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~----~~~~~~~~~~~-rpv~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (1492)
+...|+|++|||++|++++++|+.... +..+..+...+ ++.++.. . .+.... ...........+..+.+.+
T Consensus 205 ~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v--~-~p~~~l~~~~~~~~~~~l~~~L~~~i 281 (876)
T PRK13767 205 GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKV--I-SPVDDLIHTPAEEISEALYETLHELI 281 (876)
T ss_pred CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEE--e-ccCccccccccchhHHHHHHHHHHHH
Confidence 357899999999999999999997631 22222332222 2222211 1 110000 0001112233445566666
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.+++++|||||||+.|+.++..|.+..... ....++++|||+|++++|.
T Consensus 282 ~~~~~~LVF~nTr~~ae~la~~L~~~~~~~-------------------------------~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 282 KEHRTTLIFTNTRSGAERVLYNLRKRFPEE-------------------------------YDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHhchhh-------------------------------ccccceeeeeCCCCHHHHH
Confidence 778999999999999999999887643210 1235799999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC-ccceEEEEeCCccHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD-RSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d-~~G~~i~~~~~~~~~ 237 (1492)
.+|+.|++|.++|||||++|++|||+|++++||. |+++ .+..+|+||+|||||.+.+ ..|.++.. +..+..
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P---~sv~~ylQRiGRaGR~~g~~~~g~ii~~-~~~~l~ 402 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSP---KSVSRLLQRIGRAGHRLGEVSKGRIIVV-DRDDLV 402 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCC---CCHHHHHHhcccCCCCCCCCCcEEEEEc-CchhHH
Confidence 9999999999999999999999999999999996 5533 2567799999999997432 23444443 333422
Q ss_pred H---HHHH-h-cCCCcc--ccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHH
Q 043190 238 Y---YLRL-L-TSQLPI--ESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLS 310 (1492)
Q Consensus 238 ~---~~~~-~-~~~~~i--es~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~ 310 (1492)
. +.+. . ...+++ .......|..|+.+.++.+ ..+.+++++|++.||.|..+..
T Consensus 403 e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~------------------- 462 (876)
T PRK13767 403 ECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDLSD------------------- 462 (876)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccCCH-------------------
Confidence 2 1111 1 112232 3333457899999976664 7799999999999999996532
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 043190 311 LKQRALVTDAARALDKAK 328 (1492)
Q Consensus 311 ~~~~~~~~~~l~~L~~~~ 328 (1492)
+.++..++.|...+
T Consensus 463 ----~~~~~~l~~l~~~~ 476 (876)
T PRK13767 463 ----EDFESVLRYLAGDY 476 (876)
T ss_pred ----HHHHHHHHHHhccC
Confidence 34557788887663
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=232.79 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=185.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhhcc---CCEEEEEcCCCCcc---hhccCCCcEEEECchhhhHhhhcccCccccCc
Q 043190 735 MKVVYIAPLKAIVRERMNDWKDRLVSQL---GKEMVEMTGDYTPD---LMALLSADIIISTPEKWDGISRNWHSRNYVKK 808 (1492)
Q Consensus 735 ~~~l~i~P~r~La~q~~~~~~~~~~~~~---g~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~ 808 (1492)
+.++++-|+|+|++|.++.+.+ |.... .++-..+.|+.... .....+.+|+|+||++++.++.+ ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 4789999999999999997665 33321 12222333432211 22335789999999999988886 3445889
Q ss_pred ccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHH-------HHhcCCcceeEe----
Q 043190 809 VGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLA-------DWLGVGEIGLFN---- 874 (1492)
Q Consensus 809 i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~-------~~l~~~~~~~~~---- 874 (1492)
++++|+||++.+.. .....+..+...++++.+ -..+++.+.+|||+... ..++ .|...+......
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~ts-dg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTS-DGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhc-CCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 99999999997643 333344444444555443 23578899999998652 2222 344433221110
Q ss_pred -c----CCC----ccccCcEEEEeccCCccccccc---cccC---------hhHHHHHhhcCCCCCeeEEecChHHHHHH
Q 043190 875 -F----KPS----VRPVPLEVHIQGYPGKFYCPRM---NSMN---------KPAYAAICTHSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 875 -~----~~~----~r~~~l~~~~~~~~~~~~~~~~---~~~~---------~~~~~~l~~~~~~~~~LIF~~s~~~~~~~ 933 (1492)
+ .+. +....-.+...+...+.+.... ..+. ......+.. ....++||||.|+.+|..+
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~-h~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR-HAMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh-hccCceEEEEeccccchHH
Confidence 0 000 0000000000111111100000 0000 011122222 2346899999999999998
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
-+.+.+... ..+.+.++|++..+.+|..-++.|+.+..+.||||+++++
T Consensus 522 er~~~qkgg-------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaar 570 (725)
T KOG0349|consen 522 ERMMNQKGG-------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAAR 570 (725)
T ss_pred HHHHHHcCC-------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhc
Confidence 887765421 2467899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|+|+.++-++|+-| .+=....|+||+||+||+. +-|.++.++......
T Consensus 571 gldi~g~p~~invt----------lpd~k~nyvhrigrvgrae--rmglaislvat~~ek 618 (725)
T KOG0349|consen 571 GLDITGLPFMINVT----------LPDDKTNYVHRIGRVGRAE--RMGLAISLVATVPEK 618 (725)
T ss_pred cccccCCceEEEEe----------cCcccchhhhhhhccchhh--hcceeEEEeeccchh
Confidence 99999999999833 1113679999999999975 889999988755443
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=240.45 Aligned_cols=297 Identities=22% Similarity=0.266 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHhhhcC---CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 687 SHFNPIQTQIFHILYHT---DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~---~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
..++++|.+++.++.+. ++..++++|||+|||.++...+-.. ..+++|++|+++|+.|..+.+...+.. +
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----KRSTLVLVPTKELLDQWAEALKKFLLL--N 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----cCCEEEEECcHHHHHHHHHHHHHhcCC--c
Confidence 35999999999999854 8899999999999999998777665 445999999999999987766654422 1
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..++.+.|+..... ...|.|+|...+.... .......+.+++||+||||++.... +..+...+.
T Consensus 108 ~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~~------- 171 (442)
T COG1061 108 DEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELLS------- 171 (442)
T ss_pred cccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhhh-------
Confidence 23555655433211 1579999998653321 0111223379999999999886432 233333222
Q ss_pred CceE-EEEEcCCCCChH-----HHHHHhcCCcceeEecCC-------CccccCcEEEEeccCCc---cccc---------
Q 043190 844 RAVR-FIGLSTALANAG-----DLADWLGVGEIGLFNFKP-------SVRPVPLEVHIQGYPGK---FYCP--------- 898 (1492)
Q Consensus 844 ~~~~-ii~lSATl~~~~-----~~~~~l~~~~~~~~~~~~-------~~r~~~l~~~~~~~~~~---~~~~--------- 898 (1492)
... ++|||||++..+ ++...+| ..++.... ...|..+.......... .+..
T Consensus 172 -~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 172 -AAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred -cccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 233 899999976432 3444443 11221110 01111111111100000 0000
Q ss_pred -------------cccccChhH---HH-HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHH
Q 043190 899 -------------RMNSMNKPA---YA-AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961 (1492)
Q Consensus 899 -------------~~~~~~~~~---~~-~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1492)
......... .. .+..+..+.+++||+.+..++..++..+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~--------------------- 306 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP--------------------- 306 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------------------
Confidence 000000011 11 1112224679999999999999988766221
Q ss_pred HhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 962 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
+. +..+.+..+..+|..+++.|+.|.+++||++.++.+|+|+|++.++|.... .+ |
T Consensus 307 -------------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-----t~-----S 362 (442)
T COG1061 307 -------------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-----TG-----S 362 (442)
T ss_pred -------------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC-----CC-----c
Confidence 12 678899999999999999999999999999999999999999999886321 11 6
Q ss_pred HHHHHHhhcccCCC
Q 043190 1042 ITDILQMMGRAGRP 1055 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~ 1055 (1492)
...|.||+||.-|+
T Consensus 363 ~~~~~Q~lGR~LR~ 376 (442)
T COG1061 363 RRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHhhhhccC
Confidence 88999999999995
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=256.02 Aligned_cols=307 Identities=18% Similarity=0.211 Sum_probs=207.0
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCcE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQA 84 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (1492)
++.|+|+||||+ +.+.++++++..+ + +..+.|..|++.+|..............+..+ ...+.+.. ...+++
T Consensus 217 pdlKvILmSATi-d~e~fs~~F~~ap---v--I~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~l-l~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATI-DPERFSRHFNNAP---I--IEVSGRTYPVEVRYRPIVEEADDTERDQLQAI-FDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCC-CHHHHHHHcCCCC---E--EEEcCccccceEEEeecccccchhhHHHHHHH-HHHHHHHhcCCCCCE
Confidence 468999999999 5789999987542 3 33456677777776654322111111111111 11122111 346789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
||||+++++++.+++.|.+.... ...|..+||+|++++|..+++.
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~- 334 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLR----------------------------------HTEILPLYARLSNSEQNRVFQS- 334 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCC----------------------------------cceEeecccCCCHHHHHHHhcc-
Confidence 99999999999999888643100 1126778999999999999886
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEec----cceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.|..+|||||+++++|||+|++++||+. ...||+..+. .+..++.||+|||||.+ .|.||.+++.
T Consensus 335 -~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte 410 (1294)
T PRK11131 335 -HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSE 410 (1294)
T ss_pred -cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCH
Confidence 5889999999999999999999999984 3558876541 23457999999999984 7999999986
Q ss_pred ccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHH
Q 043190 234 DKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQ 313 (1492)
Q Consensus 234 ~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 313 (1492)
++.. ++. ..+...-+..+|...++...++|. .++ .+ |. +...| .
T Consensus 411 ~d~~---~~~--~~~~PEIlR~~L~~viL~lk~lgl-~di---~~-----F~---fldpP--------------~----- 454 (1294)
T PRK11131 411 DDFL---SRP--EFTDPEILRTNLASVILQMTALGL-GDI---AA-----FP---FVEAP--------------D----- 454 (1294)
T ss_pred HHHH---hhh--cccCCccccCCHHHHHHHHHHcCC-CCc---ce-----ee---CCCCC--------------C-----
Confidence 5533 321 223334445566666666555552 111 11 11 11122 1
Q ss_pred HHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhH
Q 043190 314 RALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393 (1492)
Q Consensus 314 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e 393 (1492)
.+.|.++++.|.+.|+|+.+..++...+|++|+.||.++++|..++++..+...+ +..+++.+.|... ..+...|+.+
T Consensus 455 ~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~-c~~evl~IaA~Ls-v~dpf~~p~~ 532 (1294)
T PRK11131 455 KRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHG-CVREVMIITSALS-IQDPRERPMD 532 (1294)
T ss_pred HHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcC-CHHHHHHHHHHHc-CCCcccCCch
Confidence 4678899999999999975433345689999999999999999999999876655 4556666655543 2345555555
Q ss_pred HHH
Q 043190 394 QNE 396 (1492)
Q Consensus 394 ~~~ 396 (1492)
+.+
T Consensus 533 ~~~ 535 (1294)
T PRK11131 533 KQQ 535 (1294)
T ss_pred hHH
Confidence 443
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=240.52 Aligned_cols=255 Identities=22% Similarity=0.251 Sum_probs=184.8
Q ss_pred cccEEEEcccCCChHHHHHhcCCCC-CCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNP-EMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~-~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
+.|.||||||+.+++++|+||.... +..+..... .++..+ .++ .+...... ........+..+.+.+++.+.+|
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~-~k~~~i--~v~-~p~~~~~~-~~~~~~~~~~~i~~~v~~~~ttL 257 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSA-AKKLEI--KVI-SPVEDLIY-DEELWAALYERIAELVKKHRTTL 257 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEccc-CCcceE--EEE-ecCCcccc-ccchhHHHHHHHHHHHhhcCcEE
Confidence 7999999999999999999998863 223332222 222222 111 11111000 02233445677888888888999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
||+|||..||.++..|.+... ..++.|||+|+++.|..+|+.|+
T Consensus 258 IF~NTR~~aE~l~~~L~~~~~------------------------------------~~i~~HHgSlSre~R~~vE~~lk 301 (814)
T COG1201 258 IFTNTRSGAERLAFRLKKLGP------------------------------------DIIEVHHGSLSRELRLEVEERLK 301 (814)
T ss_pred EEEeChHHHHHHHHHHHHhcC------------------------------------CceeeecccccHHHHHHHHHHHh
Confidence 999999999999998876521 35999999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc-cHHH----HH
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD-KLAY----YL 240 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~-~~~~----~~ 240 (1492)
+|.++++|||++|+.|||+.+++.||. |..+ .+....+||+||||+. .+...++++++.+- +.-. ..
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq----~~SP---~sV~r~lQRiGRsgHr-~~~~Skg~ii~~~r~dllE~~vi~~ 373 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQ----LGSP---KSVNRFLQRIGRAGHR-LGEVSKGIIIAEDRDDLLECLVLAD 373 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEE----eCCc---HHHHHHhHhccccccc-cCCcccEEEEecCHHHHHHHHHHHH
Confidence 999999999999999999999999995 4322 2566799999999995 45567888887652 2111 11
Q ss_pred HHhc---CCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 241 RLLT---SQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 241 ~~~~---~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
.... +..++...-...|..|+++.+... ..+.+++++.++++|-|..+. .+-+
T Consensus 374 ~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~-----------------------~e~f 429 (814)
T COG1201 374 LALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLS-----------------------REDF 429 (814)
T ss_pred HHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCC-----------------------HHHH
Confidence 1111 123455555678999999988877 889999999999999998542 2445
Q ss_pred HHHHHHHHH--hccccccc
Q 043190 318 TDAARALDK--AKMMRFDE 334 (1492)
Q Consensus 318 ~~~l~~L~~--~~~i~~~~ 334 (1492)
+..++.|.. .+.+....
T Consensus 430 ~~v~~~l~~~~~~~~~i~~ 448 (814)
T COG1201 430 RLVLRYLAGEKNVYAKIWL 448 (814)
T ss_pred HHHHHHHhhcccceeEEee
Confidence 678888888 66665443
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-22 Score=250.22 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=194.8
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh-cCC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR-QGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (1492)
.+++.|+|+||||+++ +.+++|++..+ .+....|..|++++|......... .......+...+. .++
T Consensus 143 lr~dlqlIlmSATl~~-~~l~~~l~~~~-----vI~~~gr~~pVe~~y~~~~~~~~~------~~~v~~~l~~~l~~~~g 210 (819)
T TIGR01970 143 LREDLKILAMSATLDG-ERLSSLLPDAP-----VVESEGRSFPVEIRYLPLRGDQRL------EDAVSRAVEHALASETG 210 (819)
T ss_pred cCCCceEEEEeCCCCH-HHHHHHcCCCc-----EEEecCcceeeeeEEeecchhhhH------HHHHHHHHHHHHHhcCC
Confidence 3568999999999975 45888886431 344567778888777654322110 0111112222222 367
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+++++++.+++.|.+.... ...+..+||+|++++|..+++
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~----------------------------------~~~v~pLHg~L~~~eq~~~~~ 256 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDS----------------------------------DVLICPLYGELSLAAQDRAIK 256 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCC----------------------------------CcEEEEecCCCCHHHHHHHHh
Confidence 8999999999999999888653210 123788999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.|++|..+|||||+++++|||+|++++||+.. ..||+..+- .+..++.||+|||||. ..|.||.++
T Consensus 257 ~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~ 333 (819)
T TIGR01970 257 PDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLW 333 (819)
T ss_pred hcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeC
Confidence 99999999999999999999999999999953 347776542 3455789999999998 479999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.++...+. ... ...-+...|...++...+.|. .+..+ +.| ...|
T Consensus 334 t~~~~~~l~---~~~--~PEI~r~~L~~~~L~l~~~g~-~~~~~-~~~----------l~~P------------------ 378 (819)
T TIGR01970 334 SEEQHQRLP---AQD--EPEILQADLSGLALELAQWGA-KDPSD-LRW----------LDAP------------------ 378 (819)
T ss_pred CHHHHHhhh---cCC--CcceeccCcHHHHHHHHHcCC-CChhh-CCC----------CCCc------------------
Confidence 865543322 222 222233345555554444442 22111 111 1222
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcC
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSH 380 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~ 380 (1492)
..+.+..|++.|...|+|+.+ + .+|++|+.||.++++|.-++++......+ +...++.+.+.
T Consensus 379 -~~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~-~~~~~~~iaa~ 440 (819)
T TIGR01970 379 -PSVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTG-LAALACDLAAL 440 (819)
T ss_pred -CHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcC-CHHHHHHHHHH
Confidence 135688999999999999633 3 58999999999999999999999865444 33344444443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=237.66 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|.. ++++|...--.+. .| -|..++||+|||++|.+|++..... +..+.+++|++.||.|.++.+.. +...+|+
T Consensus 80 g~~-~ydvQliGg~~Lh-~G--~Iaem~TGeGKTL~a~Lpa~~~al~--G~~V~VvTpn~yLA~qd~e~m~~-l~~~lGL 152 (896)
T PRK13104 80 GLR-HFDVQLIGGMVLH-EG--NIAEMRTGEGKTLVATLPAYLNAIS--GRGVHIVTVNDYLAKRDSQWMKP-IYEFLGL 152 (896)
T ss_pred CCC-cchHHHhhhhhhc-cC--ccccccCCCCchHHHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHH-HhcccCc
Confidence 544 6666655444432 33 3889999999999999999976654 56799999999999999988877 4455699
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhcccC----ccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l 820 (1492)
+|++++|+.....+ ....++|+++||++| .++++.... ....+.+.++||||||.+
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 99999998765433 233789999999997 556665321 112368999999999954
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=245.31 Aligned_cols=194 Identities=20% Similarity=0.146 Sum_probs=137.4
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCC---ch---hHHHHHhhHHHHHHHHHH
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEP---NF---AARNELLSEICYKKVVDS 77 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 77 (1492)
.+++.|+|++|||++|+.++++++... + +..++.+..|.+.....+..+.. .. ..............+...
T Consensus 191 ~g~~~q~i~~SATi~n~~~~~~~l~g~-~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l 267 (742)
T TIGR03817 191 YGASPVFVLASATTADPAAAASRLIGA-P--VVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADL 267 (742)
T ss_pred cCCCCEEEEEecCCCCHHHHHHHHcCC-C--eEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHH
Confidence 356789999999999999999888664 2 34455555555433333222110 00 000000000112234444
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+..+.++||||+||+.|+.+++.+.+...... .-+..++..|||||++++|
T Consensus 268 ~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-----------------------------~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 268 VAEGARTLTFVRSRRGAELVAAIARRLLGEVD-----------------------------PDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------------cccccchhheecCCCHHHH
Confidence 56688999999999999999998876532210 0023458899999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
+.+|+.|++|++++||||++|++|||+|++++||+ |+.+. +..+|+||+|||||.| ..|.+++++..+..+
T Consensus 319 ~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~---s~~~y~qRiGRaGR~G--~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 319 RELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG---TRASLWQQAGRAGRRG--QGALVVLVARDDPLD 389 (742)
T ss_pred HHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC---CHHHHHHhccccCCCC--CCcEEEEEeCCChHH
Confidence 99999999999999999999999999999999997 54332 5677999999999999 669999998755443
Q ss_pred H
Q 043190 238 Y 238 (1492)
Q Consensus 238 ~ 238 (1492)
.
T Consensus 390 ~ 390 (742)
T TIGR03817 390 T 390 (742)
T ss_pred H
Confidence 3
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=246.92 Aligned_cols=273 Identities=18% Similarity=0.191 Sum_probs=193.6
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh-cCC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR-QGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (1492)
.++++|+|+||||+++ +.+++++...+ .+....|..|++++|........ +...+...+...+. .++
T Consensus 146 lr~~lqlilmSATl~~-~~l~~~~~~~~-----~I~~~gr~~pV~~~y~~~~~~~~------~~~~v~~~l~~~l~~~~g 213 (812)
T PRK11664 146 LRDDLKLLIMSATLDN-DRLQQLLPDAP-----VIVSEGRSFPVERRYQPLPAHQR------FDEAVARATAELLRQESG 213 (812)
T ss_pred CCccceEEEEecCCCH-HHHHHhcCCCC-----EEEecCccccceEEeccCchhhh------HHHHHHHHHHHHHHhCCC
Confidence 4568999999999965 56888886431 24456777888887765432211 11111122233332 468
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+++++++.+++.|.+.... ...+..+||+|++++|..+.+
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~ 259 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAIL 259 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhc
Confidence 9999999999999999988753110 113788999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.|++|+.+|||||+++++|||+|.+++||+.- ..||+..|. .+..++.||+|||||.+ .|.||.++
T Consensus 260 ~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~ 336 (812)
T PRK11664 260 PAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLY 336 (812)
T ss_pred cccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEec
Confidence 99999999999999999999999999999843 348877652 34567999999999974 79999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+..+. ..+.. .+...-+...|...++.....|. .+..+ ++ +...|
T Consensus 337 t~~~~---~~l~~--~~~PEI~r~dL~~~~L~l~~~g~-~~~~~-~~----------~ld~P------------------ 381 (812)
T PRK11664 337 SKEQA---ERAAA--QSEPEILHSDLSGLLLELLQWGC-HDPAQ-LS----------WLDQP------------------ 381 (812)
T ss_pred CHHHH---hhCcc--CCCCceeccchHHHHHHHHHcCC-CCHHh-CC----------CCCCC------------------
Confidence 86543 33322 22233344566666665444442 22211 11 12222
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhh
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLR 366 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~ 366 (1492)
....+++|++.|...|+|+.+ + .+|++|+.||.++++|.-++++.....
T Consensus 382 -~~~~~~~A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 382 -PAAALAAAKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred -CHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 136788999999999999632 3 689999999999999999999988654
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=237.39 Aligned_cols=339 Identities=17% Similarity=0.183 Sum_probs=203.0
Q ss_pred CCCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.|.|+|..+...++. ....++++.++|.|||..+.+.+-..+..+...++||+||. .|+.|...++.++| +..+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF----~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRF----NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHh----CCCe
Confidence 599999999877653 23589999999999999998777666665556799999997 88888777766655 5555
Q ss_pred EEEcCCCCcc-----hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHHHHHHHHHHHhh
Q 043190 767 VEMTGDYTPD-----LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 767 ~~~~g~~~~~-----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~~~i~~~l~~~~ 839 (1492)
..+.++.... .......+++|+|.+.+..--. +.....-..++++|+||||++.. ...... ...++.+.
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~-~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~---y~~v~~La 302 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ-RLEQALAAEWDLLVVDEAHHLVWSEEAPSRE---YQVVEQLA 302 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH-HHHHHhhcCCCEEEEechhhhccCCCCcCHH---HHHHHHHh
Confidence 5554432111 1222356899999875432100 00111123689999999999852 111111 22222222
Q ss_pred hccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEe----c--------------------C--------------CCc
Q 043190 840 SQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFN----F--------------------K--------------PSV 879 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~----~--------------------~--------------~~~ 879 (1492)
. ....+++||||+.. .+++-..+..-.+..+. | . ++.
T Consensus 303 ~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 303 E---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred h---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 1 23467999999863 22211111110000000 0 0 000
Q ss_pred cccCc-----------------------------EE-------EEeccCCcccccccc----------------------
Q 043190 880 RPVPL-----------------------------EV-------HIQGYPGKFYCPRMN---------------------- 901 (1492)
Q Consensus 880 r~~~l-----------------------------~~-------~~~~~~~~~~~~~~~---------------------- 901 (1492)
...++ .+ .+.+++...+.....
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 00000 00 001111111000000
Q ss_pred --------------ccC-h---hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHh
Q 043190 902 --------------SMN-K---PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLS 963 (1492)
Q Consensus 902 --------------~~~-~---~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1492)
... . ..+..+.....+.++||||+++..+..++..|.+.
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----------------------- 516 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER----------------------- 516 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc-----------------------
Confidence 000 0 00111112234679999999999999988777321
Q ss_pred hcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC--CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 964 QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANN--KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 964 ~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
.++.+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||+ || .+.+
T Consensus 517 ----------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fD------lP~n 576 (956)
T PRK04914 517 ----------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FD------LPFN 576 (956)
T ss_pred ----------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE----ec------CCCC
Confidence 256788999999999999999999984 5999999999999999999999998 55 3446
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCc-HHHHHHhhcC
Q 043190 1042 ITDILQMMGRAGRPQYDQHGKAVILVHEPK-KSFYKKFLYE 1081 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~-~~~~~~~l~~ 1081 (1492)
+..|.||+||+||.|......+++++.... .+.+..++.+
T Consensus 577 P~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 577 PDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 899999999999999544444444444332 3344444444
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=241.54 Aligned_cols=336 Identities=15% Similarity=0.166 Sum_probs=194.4
Q ss_pred CCCHHHHHHHHhhh----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILY----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.++++|.+|+..+. ++.++.++++|||||||.++...+.+.+......++|+++|+++|+.|..+.|....... +
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~-~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG-D 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc-c
Confidence 58999999998764 345789999999999999877666666555556899999999999999999887631111 1
Q ss_pred CEEEEEcCCCC-cchhccCCCcEEEECchhhhHhhhccc---CccccCcccEEEEecccccCC---C------CccHHHH
Q 043190 764 KEMVEMTGDYT-PDLMALLSADIIISTPEKWDGISRNWH---SRNYVKKVGLMILDEIHLLGA---E------RGPILEV 830 (1492)
Q Consensus 764 ~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l~~l~~~~~---~~~~l~~i~liViDEaH~l~~---~------~g~~~~~ 830 (1492)
..+....+-.. .+.......+|+|+|..++...+.... ....+..+++||+||||+-.. + .......
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 11111111000 011112357999999998754432111 113467889999999997410 0 0001111
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecC------CC--cc-ccCcEEEEe--cc--CCc---
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFK------PS--VR-PVPLEVHIQ--GY--PGK--- 894 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~------~~--~r-~~~l~~~~~--~~--~~~--- 894 (1492)
..+..+.+.... +...||||||+.. .-..+||.. ...+.+. .. .. |..+...+. ++ ...
T Consensus 572 ~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~p-v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 572 YVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGEP-VYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred HHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCCe-eEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 123333333322 3567999999852 234445521 1111100 00 00 111111100 00 000
Q ss_pred -ccc------------cc----ccccCh---------hHHHHHhh---cCCCCCeeEEecChHHHHHHHHHHHHHHhcCC
Q 043190 895 -FYC------------PR----MNSMNK---------PAYAAICT---HSPTKPVLIFVSSRRQTRLTALDLIQFAASDE 945 (1492)
Q Consensus 895 -~~~------------~~----~~~~~~---------~~~~~l~~---~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~ 945 (1492)
.+. .. ....++ .+...+.. ....+++||||.++..|+.++..|.+......
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 000 00 000000 01111111 12347999999999999999888765421100
Q ss_pred CCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccCCCCcEEEE
Q 043190 946 TPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKI-QVLVCTSTLAWGVNLPAHLVII 1024 (1492)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~-~vLvaT~~l~~Gvdip~~~~VI 1024 (1492)
+ ......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.+..||
T Consensus 727 -~------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV 779 (1123)
T PRK11448 727 -G------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV 779 (1123)
T ss_pred -C------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE
Confidence 0 000223556788874 56789999999887 6999999999999999999888
Q ss_pred ecceeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEEE
Q 043190 1025 KGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVIL 1066 (1492)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l 1066 (1492)
. +.+. -|...|+||+||+.|...+ .+-.++++
T Consensus 780 f----~rpv------kS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 780 F----LRRV------RSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred E----ecCC------CCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 5 3322 2688999999999997532 24445555
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=245.14 Aligned_cols=303 Identities=16% Similarity=0.149 Sum_probs=200.9
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCcE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQA 84 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (1492)
+++|+|+||||+ +.+.++++++..+ + +....|..|++.+|............... +.+...+.+.. ...+++
T Consensus 210 pdLKlIlmSATl-d~~~fa~~F~~ap---v--I~V~Gr~~PVev~Y~~~~~~~~~~~~~~~-~~i~~~I~~l~~~~~GdI 282 (1283)
T TIGR01967 210 PDLKIIITSATI-DPERFSRHFNNAP---I--IEVSGRTYPVEVRYRPLVEEQEDDDLDQL-EAILDAVDELFAEGPGDI 282 (1283)
T ss_pred CCCeEEEEeCCc-CHHHHHHHhcCCC---E--EEECCCcccceeEEecccccccchhhhHH-HHHHHHHHHHHhhCCCCE
Confidence 478999999999 5789999997542 2 44556777887766543321110000111 11122222222 245789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
|||++++++++.+++.|.+.... ...|..+||+|++++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999888653110 11277899999999999986543
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
+..+||+||+++++|||+|++++||+.. ..||+..+- .+..++.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999843 457776542 23357999999999997 7999999986
Q ss_pred ccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHH
Q 043190 234 DKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQ 313 (1492)
Q Consensus 234 ~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 313 (1492)
++... +.. .+...-+..+|...++...+.|. .++.+ |- +...| .
T Consensus 404 ~~~~~---~~~--~~~PEIlR~~L~~viL~l~~lg~-~di~~--------f~---fldpP--------------~----- 447 (1283)
T TIGR01967 404 EDFNS---RPE--FTDPEILRTNLASVILQMLALRL-GDIAA--------FP---FIEAP--------------D----- 447 (1283)
T ss_pred HHHHh---hhh--ccCcccccccHHHHHHHHHhcCC-CCccc--------cc---CCCCC--------------C-----
Confidence 65433 211 12223334456666665544442 11110 10 11111 1
Q ss_pred HHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhH
Q 043190 314 RALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393 (1492)
Q Consensus 314 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e 393 (1492)
.+.+..+++.|...|+|+.+ ++...+|++|+.||.++++|..++++..+...+ +..+++.+.|...+ .++..++.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~--~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~g-cl~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDD--EAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLG-CLQEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCC--CCCccccHHHHHHhhcCCChHHHHHHHHhhhcC-CHHHHHHHHHHHcC-CCcCCCcch
Confidence 46788999999999999743 334679999999999999999999999876655 44556666655443 344444444
Q ss_pred H
Q 043190 394 Q 394 (1492)
Q Consensus 394 ~ 394 (1492)
+
T Consensus 524 ~ 524 (1283)
T TIGR01967 524 K 524 (1283)
T ss_pred h
Confidence 3
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=226.31 Aligned_cols=331 Identities=17% Similarity=0.148 Sum_probs=203.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |++.|.-..-.+ +.|+ |....||+|||+++.+|++..... |..+-+++|+--||.|-++.+...+... |+
T Consensus 78 g~~-~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~--G~~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl 150 (796)
T PRK12906 78 GLR-PFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT--GKGVHVVTVNEYLSSRDATEMGELYRWL-GL 150 (796)
T ss_pred CCC-CchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc--CCCeEEEeccHHHHHhhHHHHHHHHHhc-CC
Confidence 554 777887665544 3554 889999999999999998877664 8899999999999999999888866554 99
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc--CCCCc-----------
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL--GAERG----------- 825 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l--~~~~g----------- 825 (1492)
+|+.++|+.+... +..-.+||+++|...| +.+-.+.. .....+.+.+.||||+|.+ ++.+.
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 9999999876543 3345789999999875 32322211 1223457789999999943 22121
Q ss_pred -cHHHHHHHHHHHhhhcc---------------CCceEEEEEcC----------CCCC---hH--HHHHHhc--------
Q 043190 826 -PILEVIVSRMRYISSQT---------------ERAVRFIGLST----------ALAN---AG--DLADWLG-------- 866 (1492)
Q Consensus 826 -~~~~~i~~~l~~~~~~~---------------~~~~~ii~lSA----------Tl~~---~~--~~~~~l~-------- 866 (1492)
..+..+....+.+.... ....+.+.++. .+++ .+ .+..|+.
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 11222211112111110 00111222221 0111 00 1122211
Q ss_pred --CCcc------eeEec-CCCccccC-------------------c------------------EEEEeccCCc------
Q 043190 867 --VGEI------GLFNF-KPSVRPVP-------------------L------------------EVHIQGYPGK------ 894 (1492)
Q Consensus 867 --~~~~------~~~~~-~~~~r~~~-------------------l------------------~~~~~~~~~~------ 894 (1492)
.+.. .+... ....|..+ + ...+.|..+.
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 0000 00000 00000000 0 0011111111
Q ss_pred ---------------------------cccccccccChhHHHHH-hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCC
Q 043190 895 ---------------------------FYCPRMNSMNKPAYAAI-CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDET 946 (1492)
Q Consensus 895 ---------------------------~~~~~~~~~~~~~~~~l-~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~ 946 (1492)
.+.... .....+...+ ..+..+.|+||||+|+..++.++..|.+.
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~-~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~------ 463 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLD-SKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA------ 463 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHH-HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC------
Confidence 000000 0001122222 23457899999999999999999887442
Q ss_pred CcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC---CcE--
Q 043190 947 PRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP---AHL-- 1021 (1492)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip---~~~-- 1021 (1492)
+.....+||++...++..+.++++.|. |+|||++++||.||+ ++.
T Consensus 464 ----------------------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 464 ----------------------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred ----------------------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhh
Confidence 566789999999999999999888886 999999999999995 777
Q ss_pred ---EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1022 ---VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1022 ---~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+||. ++ .+-+...+.|+.||+||.| .+|.+..+++-++
T Consensus 514 GGLhVI~----te------~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sleD 554 (796)
T PRK12906 514 GGLAVIG----TE------RHESRRIDNQLRGRSGRQG--DPGSSRFYLSLED 554 (796)
T ss_pred CCcEEEe----ee------cCCcHHHHHHHhhhhccCC--CCcceEEEEeccc
Confidence 8886 22 2335789999999999988 8999999988765
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=225.63 Aligned_cols=358 Identities=20% Similarity=0.206 Sum_probs=232.9
Q ss_pred CCCHHHHHHHHhhhcC---CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHT---DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~---~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.+++-|..++..+..+ ....++.|.||||||.+|+-.|-+.+.+ |+.+|+++|-.+|..|+.++|+.+| |.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rF----g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARF----GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHh----CC
Confidence 5899999999988744 4789999999999999999999998886 7999999999999999999999988 67
Q ss_pred EEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc--CCC---CccHHHHHH
Q 043190 765 EMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL--GAE---RGPILEVIV 832 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l--~~~---~g~~~~~i~ 832 (1492)
++..++++.+...+. ..++.|+|+|=- .....++++++|||||-|-- -.+ +...-+..+
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS---------AlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS---------ALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEech---------hhcCchhhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 889999988765432 247899999932 22345889999999999943 222 333333333
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcc--eeEecCCCc-cccCcEEEEeccCCccccccccccChhHHH
Q 043190 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEI--GLFNFKPSV-RPVPLEVHIQGYPGKFYCPRMNSMNKPAYA 909 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~--~~~~~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1492)
-|-+ ..+..+|+-|||++ +..|..+... ....+.... +..+..+.+.+........ .......++.
T Consensus 343 ~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~-~~~lS~~Ll~ 411 (730)
T COG1198 343 LRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLET-GRSLSPALLE 411 (730)
T ss_pred HHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEecccccccc-CccCCHHHHH
Confidence 3322 23788999999974 3444433222 222222221 1112233333222211111 0114456666
Q ss_pred HHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcc-------------------------cC----------CC
Q 043190 910 AICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ-------------------------FL----------GM 953 (1492)
Q Consensus 910 ~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~-------------------------~~----------~~ 953 (1492)
.+... ..+.++|+|+|.|..+-.+...=|.....+.+.+. +. +.
T Consensus 412 ~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 412 AIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred HHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc
Confidence 66544 67889999999998765554333322211111111 00 11
Q ss_pred ChHHHHHHHhhcCcHHHHHHh-ccceEeecCCCCHHH--HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEe--cce
Q 043190 954 PEEDLQMVLSQVTDQNLRQTL-QFGIGLHHAGLNDKD--RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK--GTE 1028 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~-~~~v~~~h~~l~~~~--R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~--~~~ 1028 (1492)
..+.++ +.|.... +..+..+-++..... -+..+..|.+|+.+|||.|++++.|.|+|+++.|.. ...
T Consensus 492 Gterie--------eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~ 563 (730)
T COG1198 492 GTERIE--------EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT 563 (730)
T ss_pred cHHHHH--------HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh
Confidence 111221 2333333 567777777766543 457789999999999999999999999999987652 111
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
....++-+..+-....+.|-.|||||.+ .+|.+++.+..++...++....+
T Consensus 564 ~L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 564 GLGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred hhcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHHhc
Confidence 1111111112223678999999999976 89999999998887666655544
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=223.16 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=97.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHH-HHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il-~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+. |+++|--..-.+ +.|+ |..++||+|||+++.+|++ ..+. +..+-+++|+..||.|.++.+...+ ..+|
T Consensus 79 g~~-~~dvQlig~l~L-~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~IvTpn~yLA~rd~e~~~~l~-~~LG 150 (830)
T PRK12904 79 GMR-HFDVQLIGGMVL-HEGK--IAEMKTGEGKTLVATLPAYLNALT---GKGVHVVTVNDYLAKRDAEWMGPLY-EFLG 150 (830)
T ss_pred CCC-CCccHHHhhHHh-cCCc--hhhhhcCCCcHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH-hhcC
Confidence 554 777777655544 3443 8899999999999999996 5553 5568899999999999999888755 4559
Q ss_pred CEEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhcccC----ccccCcccEEEEeccccc
Q 043190 764 KEMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l 820 (1492)
++|+.++|+.+...+ ..-.++|+++||+.| .+.++.... ...++.+.++||||||.+
T Consensus 151 lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 151 LSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999998775533 233689999999998 566665331 124678899999999954
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=211.01 Aligned_cols=303 Identities=16% Similarity=0.221 Sum_probs=219.7
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 82 (1492)
.+++++|.+|||+ |++.|++|++..+ ++....|..|++..|..-+..++... .+..+++.- .+.+
T Consensus 193 R~~LklIimSATl-da~kfS~yF~~a~-----i~~i~GR~fPVei~y~~~p~~dYv~a-------~~~tv~~Ih~~E~~G 259 (674)
T KOG0922|consen 193 RPDLKLIIMSATL-DAEKFSEYFNNAP-----ILTIPGRTFPVEILYLKEPTADYVDA-------ALITVIQIHLTEPPG 259 (674)
T ss_pred CCCceEEEEeeee-cHHHHHHHhcCCc-----eEeecCCCCceeEEeccCCchhhHHH-------HHHHHHHHHccCCCC
Confidence 4578999999999 9999999998753 46678999999888766444333221 111122211 4567
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|||.+++.+++..++.|.+.....+... ..-+-..||+|+.+++.+|.+
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~-----------------------------~~~~lply~aL~~e~Q~rvF~ 310 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDC-----------------------------PELILPLYGALPSEEQSRVFD 310 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccC-----------------------------cceeeeecccCCHHHhhcccc
Confidence 899999999999999999988755422110 001556899999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
--..|..||++||++++..|.+|.+.+||++ ...|+|..|- .+..+..||+|||||.| .|.|+.++
T Consensus 311 p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLY 387 (674)
T KOG0922|consen 311 PAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLY 387 (674)
T ss_pred CCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEee
Confidence 9999999999999999999999999999984 4558887652 35566788999999987 79999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.++ |.++...+.| .-...+|...++...++|. +||..+. +.+.|.
T Consensus 388 te~~---~~~~~~~~~P--EI~R~~Ls~~vL~Lkalgi---------------------~d~l~F~-----f~d~P~--- 433 (674)
T KOG0922|consen 388 TESA---YDKMPLQTVP--EIQRVNLSSAVLQLKALGI---------------------NDPLRFP-----FIDPPP--- 433 (674)
T ss_pred eHHH---HhhcccCCCC--ceeeechHHHHHHHHhcCC---------------------CCcccCC-----CCCCCC---
Confidence 8654 4554444444 3334567777777777762 3444331 111222
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCC-CcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccc
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTE-LGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR 390 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~-~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R 390 (1492)
.+.+..||+.|...|+|+.+ + .+|+ +|+.||.++++|...+.+..+-.-+ +..+++.+.++.. ..++..|
T Consensus 434 --~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~g-c~~e~l~i~a~Ls-v~~~f~~ 504 (674)
T KOG0922|consen 434 --PEALEEALEELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELG-CSEEILTIAAMLS-VQSVFSR 504 (674)
T ss_pred --hHHHHHHHHHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccC-Ccchhhhheeeee-ccceecC
Confidence 46788999999999999732 3 4566 9999999999999999999854444 5557777777655 5566555
Q ss_pred hhHHH
Q 043190 391 DEEQN 395 (1492)
Q Consensus 391 ~~e~~ 395 (1492)
+.++.
T Consensus 505 p~~~~ 509 (674)
T KOG0922|consen 505 PKDKK 509 (674)
T ss_pred ccchh
Confidence 54443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=233.59 Aligned_cols=324 Identities=22% Similarity=0.226 Sum_probs=201.4
Q ss_pred CCHHHHHHHHhhhc--CCC-cEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 689 FNPIQTQIFHILYH--TDN-NVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~--~~~-~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.++.|..++..+.. ... .+++.||||+|||.+++.+.+..+... ...+++++.|++++++++++++...++.. +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~-~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF-S 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-c
Confidence 47888888887652 234 889999999999999999888776652 47899999999999999999998766543 2
Q ss_pred CEEEEEcCCCCcchh-----------------ccCCCcEEEECchhhhHhhhcccCcccc--CcccEEEEecccccCCCC
Q 043190 764 KEMVEMTGDYTPDLM-----------------ALLSADIIISTPEKWDGISRNWHSRNYV--KKVGLMILDEIHLLGAER 824 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~-----------------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l--~~i~liViDEaH~l~~~~ 824 (1492)
......+|....... ...-..+.++||-+.....-.......+ =..+++|+||+|.+.++.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 222213443221100 0011245555655443311111111001 134789999999997663
Q ss_pred -ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccc
Q 043190 825 -GPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901 (1492)
Q Consensus 825 -g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 901 (1492)
-..+..++..+.. .+..+|+||||+|.. +.+...++........ .. ..+..... ............
T Consensus 355 ~~~~l~~~i~~l~~------~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~--~~--~~~~~~e~-~~~~~~~~~~~~ 423 (733)
T COG1203 355 MLAALLALLEALAE------AGVPVLLMSATLPPFLKEKLKKALGKGREVVEN--AK--FCPKEDEP-GLKRKERVDVED 423 (733)
T ss_pred hHHHHHHHHHHHHh------CCCCEEEEecCCCHHHHHHHHHHHhcccceecc--cc--cccccccc-ccccccchhhhh
Confidence 2333333333332 378899999999973 3344444333221111 00 00000000 000000000000
Q ss_pred cc-ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 902 SM-NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 902 ~~-~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
.. .............+++++|.|||.+.|..++..|... +..+..
T Consensus 424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------------------------------~~~v~L 469 (733)
T COG1203 424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------------------------------GPKVLL 469 (733)
T ss_pred hhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CCCEEE
Confidence 00 0001112233467889999999999999999888542 115899
Q ss_pred ecCCCCHHHHHHHHHHHh----cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCC
Q 043190 981 HHAGLNDKDRSLVEELFA----NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ 1056 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~----~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g 1056 (1492)
+||.+...+|...++.++ .+...|+|||++.+.|||+.. +++|. ..-|+.+++||+||++|-|
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidf-d~mIT------------e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDF-DVLIT------------ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecccc-Ceeee------------cCCCHHHHHHHHHHHhhcc
Confidence 999999999999888654 567899999999999999984 44542 2237999999999999998
Q ss_pred CCCceEEEEEecCCc
Q 043190 1057 YDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1057 ~~~~G~~i~l~~~~~ 1071 (1492)
.+..|.+++......
T Consensus 537 ~~~~~~~~v~~~~~~ 551 (733)
T COG1203 537 KKENGKIYVYNDEER 551 (733)
T ss_pred cccCCceeEeecccC
Confidence 767788888766544
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=218.62 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=106.5
Q ss_pred CCCCC---CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHF---NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l---~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
||..| +|+|.|+++.+. .+++++..++||+|||++|.+|++..+.. +..+++++|+++||.|.++.+.. +...
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~-L~k~ 161 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGS-VLRW 161 (970)
T ss_pred cccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHH-HHhh
Confidence 67777 999999999988 67899999999999999999999987654 34589999999999999987776 5556
Q ss_pred cCCEEEEEcCCCCcchhc-cCCCcEEEECchhh-hHhhhcccCc-----cccCcccEEEEeccccc
Q 043190 762 LGKEMVEMTGDYTPDLMA-LLSADIIISTPEKW-DGISRNWHSR-----NYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~-~~~~~Iiv~Tpe~l-~~l~~~~~~~-----~~l~~i~liViDEaH~l 820 (1492)
+|++++.+.|+.....+. ..+++|+|+||+++ .++++..... ...+.+.++||||||.+
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 699999999887755432 23689999999999 7777764221 12246689999999954
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=191.72 Aligned_cols=181 Identities=22% Similarity=0.356 Sum_probs=133.2
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCccccc-ceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIP-LAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+++.|++++|||+|. ..+..+++... |-.+. +..+.-|.. ++++|+.+....+ +...+-+ +|+ .+ --
T Consensus 197 lp~~~Qvv~~SATlp~eilemt~kfmtd-pvril-vkrdeltlEgIKqf~v~ve~Eew--KfdtLcd-LYd----~L-tI 266 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHEILEMTEKFMTD-PVRIL-VKRDELTLEGIKQFFVAVEKEEW--KFDTLCD-LYD----TL-TI 266 (400)
T ss_pred CCCCceEEEEeccCcHHHHHHHHHhcCC-ceeEE-EecCCCchhhhhhheeeechhhh--hHhHHHH-Hhh----hh-eh
Confidence 5779999999999996 55555555544 33333 344444444 5566665543221 2221111 121 11 23
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|++||||||+.+..+.+++.+.. +-|...||.|++++|..+.
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~n-------------------------------------ftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREAN-------------------------------------FTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhC-------------------------------------ceeeeccCCcchhHHHHHH
Confidence 589999999999988888776542 2388889999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.||+|+-+||+||++-|||+|+|.++.||+ ||-+. ....|+||+||+||.| +.|.||-++..+++..|.
T Consensus 310 ~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~---nre~YIHRIGRSGRFG--RkGvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 310 NDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN---NRELYIHRIGRSGRFG--RKGVAINFVKSDDLRILR 379 (400)
T ss_pred HHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc---cHHHHhhhhccccccC--CcceEEEEecHHHHHHHH
Confidence 9999999999999999999999999999998 66433 2244999999999999 889999999988866554
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=210.95 Aligned_cols=311 Identities=17% Similarity=0.178 Sum_probs=231.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHH--HhcC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDS--LRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 81 (1492)
..++++++..|||+ |++.|..|+...+ +|....|..|++.+|-..++.++.. .++..+.+. -++.
T Consensus 407 ~RpdLKllIsSAT~-DAekFS~fFDdap-----IF~iPGRRyPVdi~Yt~~PEAdYld-------Aai~tVlqIH~tqp~ 473 (902)
T KOG0923|consen 407 FRPDLKLLISSATM-DAEKFSAFFDDAP-----IFRIPGRRYPVDIFYTKAPEADYLD-------AAIVTVLQIHLTQPL 473 (902)
T ss_pred hCCcceEEeecccc-CHHHHHHhccCCc-----EEeccCcccceeeecccCCchhHHH-------HHHhhheeeEeccCC
Confidence 35789999999998 9999999998654 4556788889988776666554322 112222211 1457
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+.+|||.....+.+...+.|.+....-+... . + --|...||+||.+.+..|+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski----------------------~---e---liv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKI----------------------R---E---LIVLPIYANLPSELQAKIF 525 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhcccc----------------------c---e---EEEeeccccCChHHHHhhc
Confidence 8999999999999988888877655432210 0 1 1177889999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceEEEE
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
+--..|..||++||++++..+.++++..||.. .+.|+|+.| +.+..+..||+|||||.| .|.|+.+
T Consensus 526 ePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRL 602 (902)
T KOG0923|consen 526 EPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRL 602 (902)
T ss_pred CCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEe
Confidence 99999999999999999999999999999973 245888776 345667899999999998 6999999
Q ss_pred eCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHH
Q 043190 231 TSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLS 310 (1492)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~ 310 (1492)
++.. .|...+. ..++..-...+|...++...++|.- |.+.| -+ ++.|.
T Consensus 603 Yt~~---aY~~eLE-~~t~PEIqRtnL~nvVL~LkSLGI~----Dl~~F--------dF--------------mDpPp-- 650 (902)
T KOG0923|consen 603 YTAW---AYEHELE-EMTVPEIQRTNLGNVVLLLKSLGIH----DLIHF--------DF--------------LDPPP-- 650 (902)
T ss_pred echh---hhhhhhc-cCCCcceeeccchhHHHHHHhcCcc----hhccc--------cc--------------CCCCC--
Confidence 9843 3333222 2344444567888888877777731 11111 11 12221
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccc
Q 043190 311 LKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR 390 (1492)
Q Consensus 311 ~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R 390 (1492)
.+.+..||+.|...|++. ....+|.+||.||.|+++|...+++..+-+.. +..+++.+.++.+.+..+..|
T Consensus 651 ---~etL~~aLE~LyaLGALn-----~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~-cs~EiitiaamlS~~~svfyr 721 (902)
T KOG0923|consen 651 ---TETLLKALEQLYALGALN-----HLGELTKLGRRMAEFPVDPMLSKMIVASEKYK-CSEEIITIAAMLSVGASVFYR 721 (902)
T ss_pred ---hHHHHHHHHHHHHhhccc-----cccchhhhhhhhhhcCCCHHHHhHHhhhcccc-chHHHHHHHHHHhcCchheec
Confidence 356778999999999995 33489999999999999999999999876655 558999999999999999999
Q ss_pred hhHHHHHHH
Q 043190 391 DEEQNELET 399 (1492)
Q Consensus 391 ~~e~~~l~~ 399 (1492)
+.++..-..
T Consensus 722 pk~~~v~ad 730 (902)
T KOG0923|consen 722 PKDKQVHAD 730 (902)
T ss_pred chhhhhhhh
Confidence 887655443
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-19 Score=215.65 Aligned_cols=129 Identities=18% Similarity=0.136 Sum_probs=96.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|.-.--.+ +. --|..++||.|||+++.+|++..... +..+.+++|+..||.+-++.+... ...+|+
T Consensus 80 gm~-~ydVQliGgl~L-~~--G~IaEm~TGEGKTL~a~lp~~l~al~--g~~VhIvT~ndyLA~RD~e~m~~l-~~~lGl 152 (908)
T PRK13107 80 EMR-HFDVQLLGGMVL-DS--NRIAEMRTGEGKTLTATLPAYLNALT--GKGVHVITVNDYLARRDAENNRPL-FEFLGL 152 (908)
T ss_pred CCC-cCchHHhcchHh-cC--CccccccCCCCchHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHH-HHhcCC
Confidence 554 667775443333 23 34889999999999999999876654 566999999999999998877764 455699
Q ss_pred EEEEEcCCCCcchhccC-CCcEEEECchhh-hHhhhcccC----ccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLMALL-SADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~-~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l 820 (1492)
+|+++.|+.....+... .++|+++||+.| .++++.... ....+.+.++||||||.+
T Consensus 153 sv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsi 214 (908)
T PRK13107 153 TVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSI 214 (908)
T ss_pred eEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhh
Confidence 99999998776544333 789999999997 555655311 123467899999999954
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-20 Score=193.79 Aligned_cols=158 Identities=26% Similarity=0.433 Sum_probs=126.7
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM 769 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~ 769 (1492)
||+|.++++.+. +++++++.||||+|||+++.++++..+...+..++++++|+++|+.|+++++...+.. .+.++..+
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEE
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cccccccc
Confidence 689999999998 7899999999999999999999999887654569999999999999999999887665 37788888
Q ss_pred cCCCCcc---hhc-cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCC
Q 043190 770 TGDYTPD---LMA-LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 770 ~g~~~~~---~~~-~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
+|+.... ... ..+++|+|+||+++..+++.... .+.+++++|+||+|.+.. .++..+..+..++.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~-----~~ 151 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR-----FK 151 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-----TT
T ss_pred cccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhcC-----CC
Confidence 9887643 112 24699999999999888887333 456699999999998865 444555555554432 22
Q ss_pred ceEEEEEcCCCC
Q 043190 845 AVRFIGLSTALA 856 (1492)
Q Consensus 845 ~~~ii~lSATl~ 856 (1492)
+.+++++|||++
T Consensus 152 ~~~~i~~SAT~~ 163 (169)
T PF00270_consen 152 NIQIILLSATLP 163 (169)
T ss_dssp TSEEEEEESSST
T ss_pred CCcEEEEeeCCC
Confidence 688999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=192.56 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=134.4
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++.|++.+|||... ...||.-+-.+ +..++.-..+..--++.+.|+.+... ..++..+.. +|. . -.-+
T Consensus 261 lP~~~QllLFSATf~e~V~~Fa~kivpn-~n~i~Lk~eel~L~~IkQlyv~C~~~--~~K~~~l~~-lyg----~-~tig 331 (477)
T KOG0332|consen 261 LPRNQQLLLFSATFVEKVAAFALKIVPN-ANVIILKREELALDNIKQLYVLCACR--DDKYQALVN-LYG----L-LTIG 331 (477)
T ss_pred cCCcceEEeeechhHHHHHHHHHHhcCC-Cceeeeehhhccccchhhheeeccch--hhHHHHHHH-HHh----h-hhhh
Confidence 4678999999999966 44555555443 33344333334444566666655432 222222222 121 1 2237
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|+||||+||+.+..++..+.+. ++.|+..||.|.-++|..+.+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-------------------------------------Gh~V~~l~G~l~~~~R~~ii~ 374 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-------------------------------------GHQVSLLHGDLTVEQRAAIID 374 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-------------------------------------CceeEEeeccchhHHHHHHHH
Confidence 8999999999999998887653 455999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.||.|.-+|||+|++.|||||++.+++||+..-+-+.. +.-....|+||+||+||.| +.|.+|-+++.++..
T Consensus 375 ~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~-~~pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 375 RFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT-GEPDYETYLHRIGRTGRFG--KKGLAINLVDDKDSM 446 (477)
T ss_pred HHhcCcceEEEEechhhcccccceEEEEEecCCccccC-CCCCHHHHHHHhccccccc--ccceEEEeecccCcH
Confidence 99999999999999999999999999999844432222 2335567999999999999 889999999876543
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=196.97 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=131.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC---CCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---SDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
|++.|+++|.++++.++ .++++++++|||+|||++++++++..+... ++++++|++|+++|+.|+.+.+.... ..
T Consensus 18 ~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~-~~ 95 (203)
T cd00268 18 GFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLG-KH 95 (203)
T ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHh-cc
Confidence 89999999999999998 589999999999999999999999988764 56799999999999999999988744 33
Q ss_pred cCCEEEEEcCCCCcch--hcc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHH
Q 043190 762 LGKEMVEMTGDYTPDL--MAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRY 837 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~--~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~ 837 (1492)
.+.++..++|+..... ... .+++|+|+||+++..++.+.. ..+++++++|+||+|.+.+ .++..+..++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l-- 171 (203)
T cd00268 96 TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRMLDMGFEDQIREILKLL-- 171 (203)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhhccChHHHHHHHHHhC--
Confidence 4788888888766432 222 378999999999988777643 5578999999999998753 3444444444432
Q ss_pred hhhccCCceEEEEEcCCCCC
Q 043190 838 ISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 838 ~~~~~~~~~~ii~lSATl~~ 857 (1492)
....+++++|||+++
T Consensus 172 -----~~~~~~~~~SAT~~~ 186 (203)
T cd00268 172 -----PKDRQTLLFSATMPK 186 (203)
T ss_pred -----CcccEEEEEeccCCH
Confidence 348999999999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=183.74 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=166.7
Q ss_pred hcCCCHHHHHHHhcCCccC-----CCCccchhHHHHHHHHHhc--CCcccccCC--CCChhHHHHHHHHHHHcCCCCCCc
Q 043190 366 RRHMNDSEVIEMVSHSSEF-----ENIVVRDEEQNELETLVQT--LCPVEVKGG--PSNKHGKISILIQLYISRGWIDTF 436 (1492)
Q Consensus 366 ~~~~~~~~ll~ils~s~Ef-----~~i~~R~~e~~~l~~l~~~--~~~~~~~~~--~~~~~~K~~~Llqa~i~~~~~~~~ 436 (1492)
.+.|....+|.+|+.|.|| +++.-|+.+.-++..|++. ++.-.-++. .-..+.|+.+||.||++|++++.-
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 4556677899999999999 4677899998899888887 111111221 136789999999999999999987
Q ss_pred hhHhhHHHHHHhHHHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHH
Q 043190 437 SLVSDAAYISASLARIMRALFETCLRR----------G--WCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRK 504 (1492)
Q Consensus 437 ~l~~d~~~i~~~~~rl~~al~ei~~~~----------~--~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~ 504 (1492)
+|..|..+|+..++|++..|+.++... + -..+..|||+|+.|+.||+|.-.+||+||| ||.++-+++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLP-HitednL~~ 166 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLP-HITEDNLQH 166 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCC-ccchHHHHH
Confidence 899999999999999999999887653 2 235678999999999999999999999999 999999999
Q ss_pred HHHcC-C-ChhHHhhCCHHHHHHHhc--CCchHHHHHHHhccCCceeEEEEEeec--------c-cceEEEEEEE
Q 043190 505 LEERG-A-DLDRLQEMEEKDIGALIR--YTPGGRLVKQYLGYFPSIQLSATVSPI--------T-RTVLKIGLAI 566 (1492)
Q Consensus 505 l~~~~-~-~~~~l~~~~~~~~~~l~~--~~~~~~~i~~~~~~~P~~~i~~~~~~~--------~-~~~~~i~~~~ 566 (1492)
+.++. + |+++|+.+.++++..+|+ +...++++...+.+||++.++...+.+ | +.+++|.|++
T Consensus 167 ~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl 241 (520)
T KOG4434|consen 167 LRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTL 241 (520)
T ss_pred HhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEE
Confidence 97654 6 999999999999999998 788899999999999999998876543 2 4566666665
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=200.04 Aligned_cols=176 Identities=24% Similarity=0.321 Sum_probs=137.5
Q ss_pred CcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceE-EEEEeeCCchhHHHHHhhHHHHHHHHHHHh--cC
Q 043190 6 RMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-QYIGISEPNFAARNELLSEICYKKVVDSLR--QG 81 (1492)
Q Consensus 6 ~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 81 (1492)
.-.|.++||||+|. ++.+|+-.... .-+..++...+|+|.-. .++-+.+... ++++.+.++ ..
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~--pv~vtig~~gk~~~rveQ~v~m~~ed~k-----------~kkL~eil~~~~~ 517 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRR--PVVVTIGSAGKPTPRVEQKVEMVSEDEK-----------RKKLIEILESNFD 517 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhC--CeEEEeccCCCCccchheEEEEecchHH-----------HHHHHHHHHhCCC
Confidence 34899999999997 66676655443 23456788899999544 4444443221 123333333 35
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|+|||+|+++.|+.+|+.|.+. .+.+..+|||-++++|..+.
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~-------------------------------------g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKA-------------------------------------GYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhc-------------------------------------cceEEEeeCCccHHHHHHHH
Confidence 79999999999999999988654 34488899999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.|++|.-.|||||++++||||+|+++.||+ ||-.. +..+|.||+||+||+| .+|.|+.+++..+-+-|.
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak---sieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK---SIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFY 630 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeee----cchhh---hHHHHHHHhccccccc--cCceeEEEeccchhHHHH
Confidence 9999999999999999999999999999998 66433 4557999999999999 889999999888755443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=222.59 Aligned_cols=180 Identities=22% Similarity=0.231 Sum_probs=128.8
Q ss_pred CcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCccccc-ceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIP-LAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
++.|++++|||+|+ .+.++.++..+ + ..+.++...++.. +.+.+..+.... +.. .+++.+........+
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~~~~~~-~-~~i~~~~~~~~~~~v~q~~~~~~~~~---k~~----~l~~~l~~~~~~~~~ 369 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFASSLAKD-I-ILISIGNPNRPNKAVKQLAIWVETKQ---KKQ----KLFDILKSKQHFKPP 369 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHHHhCCC-C-EEEEeCCCCCCCcceeEEEEeccchh---HHH----HHHHHHHhhcccCCC
Confidence 35799999999997 67788887654 2 2223333444433 233333332211 111 111222111123468
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+|+..++.+++.|.... ...+..|||+|++++|..+++.
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~------------------------------------g~~~~~~Hg~~~~~eR~~il~~ 413 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVT------------------------------------GLKALSIHGEKSMKERREVMKS 413 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhcc------------------------------------CcceEEeeCCCCHHHHHHHHHH
Confidence 9999999999999888775321 2237889999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
|++|+++|||||++|++|||+|++++||+ ||... +..+|+||+|||||.| ..|.|+++++.++...+
T Consensus 414 Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~---s~~~yihRiGRaGR~g--~~G~ai~f~~~~~~~~~ 480 (518)
T PLN00206 414 FLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN---TIKEYIHQIGRASRMG--EKGTAIVFVNEEDRNLF 480 (518)
T ss_pred HHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC---CHHHHHHhccccccCC--CCeEEEEEEchhHHHHH
Confidence 99999999999999999999999999997 76543 5667999999999999 67999999987765443
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=195.79 Aligned_cols=183 Identities=23% Similarity=0.320 Sum_probs=140.5
Q ss_pred CCCCCcccEEEEcccCCChHHHHHhcCCCCCCceE-eecCCccccc-ceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 2 ESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLF-FFDSSYRPIP-LAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~-~~~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
+..+.+.|.+++|||+|. .+.+...+.++..+- ...+.|+.|| +.++|+.++.+..... ++ .+++. .
T Consensus 230 k~ip~erqt~LfsATMt~--kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~y------LV--~ll~e-~ 298 (476)
T KOG0330|consen 230 KVIPRERQTFLFSATMTK--KVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTY------LV--YLLNE-L 298 (476)
T ss_pred HhcCccceEEEEEeecch--hhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchh------HH--HHHHh-h
Confidence 456788999999999986 444444555443332 3455678887 7777877765432211 11 11112 3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.|.++||||+|...+..+|-.|..... ..-..||.|+++.|.-
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~-------------------------------------~a~~LhGqmsq~~Rlg 341 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGF-------------------------------------QAIPLHGQMSQSKRLG 341 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCc-------------------------------------ceecccchhhHHHHHH
Confidence 468999999999999999987765422 2445699999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
..+.|++|...||+||++++||+|+|.+++||+ ||-+. ...+|+||+||+||+| .+|.+|.++++.+++.|
T Consensus 342 ~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~---~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 342 ALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT---HSKDYIHRVGRTARAG--RSGKAITLVTQYDVELV 412 (476)
T ss_pred HHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC---cHHHHHHHcccccccC--CCcceEEEEehhhhHHH
Confidence 999999999999999999999999999999998 66432 4556999999999999 89999999999888877
Q ss_pred HH
Q 043190 240 LR 241 (1492)
Q Consensus 240 ~~ 241 (1492)
.+
T Consensus 413 qr 414 (476)
T KOG0330|consen 413 QR 414 (476)
T ss_pred HH
Confidence 65
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=220.40 Aligned_cols=179 Identities=20% Similarity=0.280 Sum_probs=132.3
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..+...|++++|||+|+ ...++..+... +..+ .+........+.++++.+.... +...+..+ +.. ..+
T Consensus 174 ~~~~~~q~ll~SAT~~~~~~~l~~~~~~~-~~~i-~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~l-----l~~-~~~ 242 (460)
T PRK11776 174 QAPARRQTLLFSATYPEGIAAISQRFQRD-PVEV-KVESTHDLPAIEQRFYEVSPDE---RLPALQRL-----LLH-HQP 242 (460)
T ss_pred hCCcccEEEEEEecCcHHHHHHHHHhcCC-CEEE-EECcCCCCCCeeEEEEEeCcHH---HHHHHHHH-----HHh-cCC
Confidence 35677899999999986 56666665544 2222 2333333444666666554321 22222111 111 345
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.++||||+|++.|+.+++.|.+. ...+..+||+|++.+|..++
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~-------------------------------------~~~v~~~hg~~~~~eR~~~l 285 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ-------------------------------------GFSALALHGDLEQRDRDQVL 285 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCHHHHHHHH
Confidence 68999999999999999988643 23488999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+.|++|.++|||||+++++|||+|++++||+ |+.. .+..+|+||+|||||.| ..|.|+.++.+++...
T Consensus 286 ~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p---~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e~~~ 353 (460)
T PRK11776 286 VRFANRSCSVLVATDVAARGLDIKALEAVIN----YELA---RDPEVHVHRIGRTGRAG--SKGLALSLVAPEEMQR 353 (460)
T ss_pred HHHHcCCCcEEEEecccccccchhcCCeEEE----ecCC---CCHhHhhhhcccccCCC--CcceEEEEEchhHHHH
Confidence 9999999999999999999999999999997 4432 24556999999999999 6799999998876544
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-19 Score=223.32 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=133.1
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH---hc
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL---RQ 80 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 80 (1492)
+.+++++||||.+. .+|+.+.|+.. . ...+..+..|| .+... +..+.. .. ...+...+ ..
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~-~-~~vfr~Sf~Rp-NL~y~---Vv~k~k-k~--------le~L~~~I~~~~~ 679 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLV-N-CVVFRQSFNRP-NLWYS---VVPKTK-KC--------LEDIDKFIKENHF 679 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCC-C-cEEeecccCcc-ceEEE---Eeccch-hH--------HHHHHHHHHhccc
Confidence 46789999999985 56788888754 2 22223333454 34222 222111 10 01122222 22
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+||++|+.+|..|.+. +..+++|||||++++|..+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~-------------------------------------Gika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF-------------------------------------GHKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC-------------------------------------CCCeeeeeCCCCHHHHHHH
Confidence 467999999999999999988643 2348999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|+++|||||++++||||+|++++||+ |+.+. +..+|+||+|||||.| ..|.|+++++..+...+.
T Consensus 723 qe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydlPk---SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~ 793 (1195)
T PLN03137 723 QKQWSKDEINIICATVAFGMGINKPDVRFVIH----HSLPK---SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVK 793 (1195)
T ss_pred HHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cCCCC---CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHH
Confidence 99999999999999999999999999999997 66443 5567999999999999 679999999888877777
Q ss_pred HHhcC
Q 043190 241 RLLTS 245 (1492)
Q Consensus 241 ~~~~~ 245 (1492)
.++..
T Consensus 794 ~lI~~ 798 (1195)
T PLN03137 794 HMISQ 798 (1195)
T ss_pred HHHhc
Confidence 66644
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-19 Score=215.47 Aligned_cols=182 Identities=24% Similarity=0.336 Sum_probs=132.4
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
+++|+++||||+++ .+++.++++.. ...++ ..+..|| .+.. .+..... . .+.+ +...+.+ ..+++.
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~-~~~~~-~~s~~r~-nl~~---~v~~~~~-~---~~~~-l~~~l~~-~~~~~~ 228 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLK-NPQIF-CTSFDRP-NLYY---EVRRKTP-K---ILED-LLRFIRK-EFKGKS 228 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCC-CCcEE-eCCCCCC-CcEE---EEEeCCc-c---HHHH-HHHHHHH-hcCCCc
Confidence 46899999999987 46888888765 22222 2222333 2321 1211110 1 1111 1111111 134667
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+|+++|+.++..|.+. ...++.+||||++++|..+++.
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-------------------------------------g~~~~~~H~~l~~~eR~~i~~~ 271 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-------------------------------------GIAAGAYHAGLEISARDDVHHK 271 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-------------------------------------CCCeeEeeCCCCHHHHHHHHHH
Confidence 799999999999999888643 2248899999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHh
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLL 243 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~ 243 (1492)
|++|.++|||||+++++|||+|++++||+ |+++. +..+|+||+|||||.| ..|.|+++++..+...+..++
T Consensus 272 F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~---s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 272 FQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK---SMESYYQESGRAGRDG--LPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHcCCCcEEEEechhhccCCcccceEEEE----eCCCC---CHHHHHhhhcCcCCCC--CCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999997 55432 5567999999999999 679999999998887777765
Q ss_pred cC
Q 043190 244 TS 245 (1492)
Q Consensus 244 ~~ 245 (1492)
..
T Consensus 343 ~~ 344 (470)
T TIGR00614 343 ME 344 (470)
T ss_pred hc
Confidence 44
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-19 Score=217.70 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=129.3
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+...|++++|||+++ ..+++.++..+ +..+.+......+-.+.+++..+... .+...+.. +... ....
T Consensus 177 l~~~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~-----l~~~-~~~~ 246 (456)
T PRK10590 177 LPAKRQNLLFSATFSDDIKALAEKLLHN-PLEIEVARRNTASEQVTQHVHFVDKK---RKRELLSQ-----MIGK-GNWQ 246 (456)
T ss_pred CCccCeEEEEeCCCcHHHHHHHHHHcCC-CeEEEEecccccccceeEEEEEcCHH---HHHHHHHH-----HHHc-CCCC
Confidence 4567899999999998 67888777655 33333322222233344444333221 11111111 1111 2356
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+|+++++.+++.|.+. ...+..+||+|++++|..+++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKD-------------------------------------GIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHC-------------------------------------CCCEEEEECCCCHHHHHHHHH
Confidence 8999999999999999887542 223788999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.|++|+++|||||+++++|||+|++++||+ |+... +..+|+||+|||||+| ..|.|+.++..++..
T Consensus 290 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~---~~~~yvqR~GRaGR~g--~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 290 DFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN---VPEDYVHRIGRTGRAA--ATGEALSLVCVDEHK 355 (456)
T ss_pred HHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC---CHHHhhhhccccccCC--CCeeEEEEecHHHHH
Confidence 999999999999999999999999999997 66432 5567999999999999 679999988776644
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-19 Score=214.72 Aligned_cols=183 Identities=22% Similarity=0.336 Sum_probs=126.3
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.++++|+|++|||+|+ ..++....... +..+...........+.+.+..+... ..+...+. .+.+. ....
T Consensus 198 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-----~~~~~-~~~~ 268 (401)
T PTZ00424 198 LPPDVQVALFSATMPNEILELTTKFMRD-PKRILVKKDELTLEGIRQFYVAVEKE--EWKFDTLC-----DLYET-LTIT 268 (401)
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHHcCC-CEEEEeCCCCcccCCceEEEEecChH--HHHHHHHH-----HHHHh-cCCC
Confidence 4578999999999998 33333332222 22222111122222233333332211 11111111 11111 2356
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+|++.++.+++.+.+. ..++++|||+|++++|..+++
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~-------------------------------------~~~~~~~h~~~~~~~R~~i~~ 311 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHER-------------------------------------DFTVSCMHGDMDQKDRDLIMR 311 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHC-------------------------------------CCcEEEEeCCCCHHHHHHHHH
Confidence 8999999999999988877542 235899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
.|++|+++|||||+++++|||+|++++||+ |++. .+..+|+||+|||||.| ..|.|++++++++...+.+
T Consensus 312 ~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p---~s~~~y~qr~GRagR~g--~~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 312 EFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLP---ASPENYIHRIGRSGRFG--RKGVAINFVTPDDIEQLKE 381 (401)
T ss_pred HHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCC---CCHHHEeecccccccCC--CCceEEEEEcHHHHHHHHH
Confidence 999999999999999999999999999996 5543 36677999999999998 6799999998887665543
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=198.94 Aligned_cols=314 Identities=18% Similarity=0.214 Sum_probs=226.0
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHH-HH-hcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVD-SL-RQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 82 (1492)
.+++++|..|||+ |++.|+.|++..+ .|....|+.|++..|...+-.++.. ....+.++ ++ ...+
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn~p-----~f~IpGRTyPV~~~~~k~p~eDYVe-------aavkq~v~Ihl~~~~G 564 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGNCP-----QFTIPGRTYPVEIMYTKTPVEDYVE-------AAVKQAVQIHLSGPPG 564 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCCCc-----eeeecCCccceEEEeccCchHHHHH-------HHHhhheEeeccCCCC
Confidence 4589999999999 9999999999543 4677899999977665443322211 11111111 12 2347
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|||.+.+.+++-+...|.+.+....... .. ...|-..++.|+.+.+..|++
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~---------------------~~------~L~vlpiYSQLp~dlQ~kiFq 617 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAP---------------------TT------DLAVLPIYSQLPADLQAKIFQ 617 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCC---------------------CC------ceEEEeehhhCchhhhhhhcc
Confidence 899999999999999998887665321110 00 112667899999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.-..|..||||||++++..+.+|.+..||.. .+.|++..| +.+.....||+|||||.| .|.|+.++
T Consensus 618 ~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlY 694 (1042)
T KOG0924|consen 618 KAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLY 694 (1042)
T ss_pred cCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeeh
Confidence 9999999999999999999999999999983 466888776 345556778999999987 69999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.+. +...|+.. ++..-...+|...++-..++|. +|+.+| .+...|
T Consensus 695 Te~a--y~~eml~s--tvPEIqRTNl~nvVLlLkslgV----~dll~F--------dFmD~P------------------ 740 (1042)
T KOG0924|consen 695 TEDA--YKNEMLPS--TVPEIQRTNLSNVVLLLKSLGV----DDLLKF--------DFMDPP------------------ 740 (1042)
T ss_pred hhhH--HHhhcccC--CCchhhhcchhhHHHHHHhcCh----hhhhCC--------CcCCCC------------------
Confidence 7532 22233333 3334445677777766666663 333332 111111
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccch
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRD 391 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~ 391 (1492)
..+.+.+++..|.-.|+|... -.+|++|+.|+.|+++|...+++.-... ..+..++|.++|+.. ...+..|+
T Consensus 741 -ped~~~~sly~Lw~LGAl~~~-----g~LT~lG~~MvefpLDP~lsKmll~a~~-~Gc~dEilsIvSmLS-vp~VF~rp 812 (1042)
T KOG0924|consen 741 -PEDNLLNSLYQLWTLGALDNT-----GQLTPLGRKMVEFPLDPPLSKMLLMAAR-MGCSDEILSIVSMLS-VPAVFYRP 812 (1042)
T ss_pred -HHHHHHHHHHHHHHhhccccC-----CccchhhHHhhhCCCCchHHHHHHHHhc-cCcHHHHHHHHHHhc-ccceeecc
Confidence 246788999999999999642 3799999999999999999999987543 346678888888765 45778898
Q ss_pred hHHHHHHHHHhc
Q 043190 392 EEQNELETLVQT 403 (1492)
Q Consensus 392 ~e~~~l~~l~~~ 403 (1492)
.|+++-..+...
T Consensus 813 ker~eead~ar~ 824 (1042)
T KOG0924|consen 813 KEREEEADAARE 824 (1042)
T ss_pred ccchhhhhhHHh
Confidence 888887777665
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=186.76 Aligned_cols=177 Identities=24% Similarity=0.292 Sum_probs=128.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCC--CCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNP--EMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~--~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.|+..|++++|||.|. .+..|..... |-.+ ..-.+..+.-+.++|-.+.+.. +...++.+... -+-
T Consensus 255 lP~~rQillySATFP~--tVk~Fm~~~l~kPy~I-NLM~eLtl~GvtQyYafV~e~q---KvhCLntLfsk------LqI 322 (459)
T KOG0326|consen 255 LPKERQILLYSATFPL--TVKGFMDRHLKKPYEI-NLMEELTLKGVTQYYAFVEERQ---KVHCLNTLFSK------LQI 322 (459)
T ss_pred CCccceeeEEecccch--hHHHHHHHhccCccee-ehhhhhhhcchhhheeeechhh---hhhhHHHHHHH------hcc
Confidence 5788999999999998 3333433221 1111 1222344455555555554332 22222222211 134
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|++|||||-+.+|.+|+++.+. ++.+-|.||.|.+++|.+|.
T Consensus 323 NQsIIFCNS~~rVELLAkKITel-------------------------------------GyscyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITEL-------------------------------------GYSCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhc-------------------------------------cchhhHHHHHHHHhhhhhhh
Confidence 68999999999999999999765 33366789999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
..|++|..+.||||+.+.||||++|++|||+ ||-+. ...+|+||+||+||.| .-|.||-+.+-++...
T Consensus 366 HdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk---~aEtYLHRIGRsGRFG--hlGlAInLityedrf~ 433 (459)
T KOG0326|consen 366 HDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK---NAETYLHRIGRSGRFG--HLGLAINLITYEDRFN 433 (459)
T ss_pred hhhhccccceeeehhhhhcccccceeeEEEe----cCCCC---CHHHHHHHccCCccCC--CcceEEEEEehhhhhh
Confidence 9999999999999999999999999999998 55333 5567999999999999 6799998887665433
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-19 Score=215.65 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=131.9
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc--ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY--RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
..+.+.|.++||||+|+ ..+++.-+..+ |..+.+-.... -+-.+.+.++.+.... .+...+..++ +. .
T Consensus 201 ~~p~~~qtllfSAT~~~~i~~l~~~~l~~-p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L~~ll-----~~-~ 271 (513)
T COG0513 201 ALPPDRQTLLFSATMPDDIRELARRYLND-PVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELLLKLL-----KD-E 271 (513)
T ss_pred hCCcccEEEEEecCCCHHHHHHHHHHccC-CcEEEEccccccccccCceEEEEEeCCHH--HHHHHHHHHH-----hc-C
Confidence 45668999999999998 44444444443 33333221222 3445666666665432 2222222221 11 2
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
...++||||+|++.|+.++..|... ++.++..||+|++++|..
T Consensus 272 ~~~~~IVF~~tk~~~~~l~~~l~~~-------------------------------------g~~~~~lhG~l~q~~R~~ 314 (513)
T COG0513 272 DEGRVIVFVRTKRLVEELAESLRKR-------------------------------------GFKVAALHGDLPQEERDR 314 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHC-------------------------------------CCeEEEecCCCCHHHHHH
Confidence 3447999999999999998877653 233889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc-cHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD-KLAY 238 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~-~~~~ 238 (1492)
+.+.|++|..+|||||+++|||+|+|.+++||+ ||.+ .+..+|+||+||+||+| ..|.++.++.+. +...
T Consensus 315 ~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p---~~~e~yvHRiGRTgRaG--~~G~ai~fv~~~~e~~~ 385 (513)
T COG0513 315 ALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLP---LDPEDYVHRIGRTGRAG--RKGVAISFVTEEEEVKK 385 (513)
T ss_pred HHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCC---CCHHHheeccCccccCC--CCCeEEEEeCcHHHHHH
Confidence 999999999999999999999999999999998 6654 25567999999999999 789999999875 4433
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=218.60 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=147.0
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcC
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQG 81 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (1492)
+++++++||||.++ ..++.++++... ....+.+..|| .+. +....... .. ..+...+ ..+
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~--~~~~~~~~~r~-nl~--~~v~~~~~---~~--------~~l~~~l~~~~~ 236 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLND--PLIQISSFDRP-NIR--YTLVEKFK---PL--------DQLMRYVQEQRG 236 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCC--eEEEECCCCCC-cce--eeeeeccc---hH--------HHHHHHHHhcCC
Confidence 46889999999987 356778876542 22333333454 221 11111111 11 1111111 356
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+||++|+.+++.|.+. ...++.+||||++++|..++
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~-------------------------------------g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSR-------------------------------------GISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC-------------------------------------CCCEEEecCCCCHHHHHHHH
Confidence 89999999999999999988643 22488999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|.++|||||+++++|||+|++++||+ |+.+ .+..+|+||+|||||.| ..|.|+++++..+...+.+
T Consensus 280 ~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P---~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~ 350 (607)
T PRK11057 280 EAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIP---RNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRR 350 (607)
T ss_pred HHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCC---CCHHHHHHHhhhccCCC--CCceEEEEeCHHHHHHHHH
Confidence 9999999999999999999999999999997 6643 25667999999999999 5699999999988887777
Q ss_pred HhcCCCccc-cchhHhHHHHHHH--HHHhCcccCHHHHHHHhhhhh
Q 043190 242 LLTSQLPIE-SQFISSLKDNLNA--EVALGTVTNVKEACAWLGYTY 284 (1492)
Q Consensus 242 ~~~~~~~ie-s~l~~~l~~~l~~--ei~~~~i~~~~~~~~~~~~t~ 284 (1492)
++.....-. ..+. ...+++ ..+.+..+-..-.+++|...|
T Consensus 351 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~Crr~~~l~yf~e~~ 393 (607)
T PRK11057 351 CLEEKPAGQQQDIE---RHKLNAMGAFAEAQTCRRLVLLNYFGEGR 393 (607)
T ss_pred HHhcCCcHHHHHHH---HHHHHHHHHHHhcccCHHHHHHHHhCCCC
Confidence 765543211 1111 112222 223334444555666766654
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-19 Score=205.55 Aligned_cols=181 Identities=21% Similarity=0.242 Sum_probs=128.5
Q ss_pred CC-CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCC--cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH
Q 043190 3 ST-QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSS--YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 3 ~~-~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~--~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
.+ +.+.|.+++|||.|- .+.+|.-+..+ +..+.+...+ .....+.+.+..+. ...+...+..+ +.+..
T Consensus 266 ~i~~~~rQtlm~saTwp~~v~~lA~~fl~~-~~~i~ig~~~~~~a~~~i~qive~~~---~~~K~~~l~~l----L~~~~ 337 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWPKEVRQLAEDFLNN-PIQINVGNKKELKANHNIRQIVEVCD---ETAKLRKLGKL----LEDIS 337 (519)
T ss_pred hcCCCcccEEEEeeeccHHHHHHHHHHhcC-ceEEEecchhhhhhhcchhhhhhhcC---HHHHHHHHHHH----HHHHh
Confidence 44 344589999999996 77777666544 4433332221 11112222222222 12222222111 11111
Q ss_pred -hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 -~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
..++++||||+|++.|++++..+... .+++...||+.++.+|
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~-------------------------------------~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRK-------------------------------------GWPAVAIHGDKSQSER 380 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhc-------------------------------------CcceeeecccccHHHH
Confidence 35678999999999999999988653 2347788999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+.+.|++|+..|||||+++|||+|+|++++||+ ||++. +..+|+||+||+||+| ..|.|+.+.+..+..
T Consensus 381 ~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~---~vEdYVHRiGRTGRa~--~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 381 DWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN---NVEDYVHRIGRTGRAG--KKGTAITFFTSDNAK 451 (519)
T ss_pred HHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC---CHHHHHhhcCccccCC--CCceEEEEEeHHHHH
Confidence 99999999999999999999999999999999998 66543 5567999999999998 889999999876643
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=214.88 Aligned_cols=290 Identities=19% Similarity=0.213 Sum_probs=207.2
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQ 83 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (1492)
+.++++|.||||+ |.++|+++++..+ ++..+.|..|++.+|......+.. +.+.+...+..++ ...+.
T Consensus 193 r~DLKiIimSATl-d~~rfs~~f~~ap-----vi~i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 193 RDDLKLIIMSATL-DAERFSAYFGNAP-----VIEIEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred CCCceEEEEeccc-CHHHHHHHcCCCC-----EEEecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCC
Confidence 3469999999999 9999999998543 577899999998887544332221 2222222333333 44689
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||.+...+.+.+++.|.+.... . ..-|...||.|+.+++.+|++-
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~-~--------------------------------~~~i~PLy~~L~~~eQ~rvF~p 308 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELG-D--------------------------------DLEILPLYGALSAEEQVRVFEP 308 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhcccc-C--------------------------------CcEEeeccccCCHHHHHhhcCC
Confidence 999999999999999998761100 0 1127788999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
-..|+.||++||++++.++.+|.+++||.+ ...||+..| +.+..+..||+|||||-+ .|.||-+++
T Consensus 309 ~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLys 385 (845)
T COG1643 309 APGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYS 385 (845)
T ss_pred CCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecC
Confidence 999999999999999999999999999984 345888765 245567889999999986 799999998
Q ss_pred CccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHH
Q 043190 233 HDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLK 312 (1492)
Q Consensus 233 ~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~ 312 (1492)
.++ |..+...+.| .-+..+|...++..-..|.- .+|..+ |.+...
T Consensus 386 e~~---~~~~~~~t~P--EIlrtdLs~~vL~l~~~G~~--------------------~d~~~f----------~fld~P 430 (845)
T COG1643 386 EED---FLAFPEFTLP--EILRTDLSGLVLQLKSLGIG--------------------QDIAPF----------PFLDPP 430 (845)
T ss_pred HHH---HHhcccCCCh--hhhhcchHHHHHHHHhcCCC--------------------CCcccC----------ccCCCC
Confidence 643 3344333333 33444555555544444421 122221 122222
Q ss_pred HHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCc
Q 043190 313 QRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSS 382 (1492)
Q Consensus 313 ~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~ 382 (1492)
....+..|+..|...|+++.+ + .+|++|+.||.++++|.-+.++...-. ..+..+++.+.|...
T Consensus 431 ~~~~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lpldprLA~mLl~a~~-~g~~~e~~~Ias~Ls 494 (845)
T COG1643 431 PEAAIQAALTLLQELGALDDS---G--KLTPLGKQMSLLPLDPRLARMLLTAPE-GGCLGEAATIASMLS 494 (845)
T ss_pred ChHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCCCChHHHHHHHhccc-cCcHHHHHHHHHhhc
Confidence 246788999999999999743 3 499999999999999999999998655 334445555555443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=212.36 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=128.1
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc-c-cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY-R-PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~-r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
..++.|++++|||+|. .+.+++++....+..+. ++... . ...+.+.+..+.... +...+. ..+......
T Consensus 305 ~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~-vg~~~l~~~~~i~q~~~~~~~~~---k~~~L~----~ll~~~~~~ 376 (545)
T PTZ00110 305 IRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVN-VGSLDLTACHNIKQEVFVVEEHE---KRGKLK----MLLQRIMRD 376 (545)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEE-ECCCccccCCCeeEEEEEEechh---HHHHHH----HHHHHhccc
Confidence 4567899999999986 66777776543122121 11111 1 112333333333211 111111 122222236
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+|++.|+.+++.|... ...+..+||++++++|..+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~-------------------------------------g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD-------------------------------------GWPALCIHGDKKQEERTWV 419 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc-------------------------------------CCcEEEEECCCcHHHHHHH
Confidence 789999999999999999887532 1236788999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
++.|++|.++|||||+++++|||+|++++||+ ||... +..+|+||+|||||.| ..|.|+.++++++..
T Consensus 420 l~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~---s~~~yvqRiGRtGR~G--~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 420 LNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN---QIEDYVHRIGRTGRAG--AKGASYTFLTPDKYR 487 (545)
T ss_pred HHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC---CHHHHHHHhcccccCC--CCceEEEEECcchHH
Confidence 99999999999999999999999999999997 66543 5567999999999999 779999999887654
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-18 Score=206.57 Aligned_cols=114 Identities=25% Similarity=0.336 Sum_probs=99.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
...++||||+|++.|+.+++.|.+. ...++++||+|++++|..
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~-------------------------------------g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAAD-------------------------------------GHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhC-------------------------------------CCcEEEecCCCChhHHHH
Confidence 3578999999999999998887542 234899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|+++|||||+++++|||+|++++||+ ||++. +..+|+||+|||||.| ..|.|+.+..+.+...+
T Consensus 297 ~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~---s~~~yiqR~GR~gR~G--~~G~ai~~~~~~~~~~~ 367 (423)
T PRK04837 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD---DCEDYVHRIGRTGRAG--ASGHSISLACEEYALNL 367 (423)
T ss_pred HHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC---chhheEeccccccCCC--CCeeEEEEeCHHHHHHH
Confidence 999999999999999999999999999999997 66532 5667999999999999 77999999987764433
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-18 Score=211.78 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=129.0
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..+...|+++||||+|+ ..++++.+... +..+.+.........+.+.++.+... .+...+. .+++. ...
T Consensus 176 ~lp~~~q~llfSAT~p~~i~~i~~~~l~~-~~~i~i~~~~~~~~~i~q~~~~v~~~---~k~~~L~-----~~L~~-~~~ 245 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTTRPDISQSYWTVWGM---RKNEALV-----RFLEA-EDF 245 (629)
T ss_pred hCCCCCeEEEEEccCChhHHHHHHHHcCC-CeEEEccCccccCCceEEEEEEechh---hHHHHHH-----HHHHh-cCC
Confidence 45678899999999997 55566555444 33332222222222344444443321 1111111 11111 344
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.++||||+|++.|+.++..|.+. .+.+..+||+|++.+|..++
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~-------------------------------------g~~~~~lhgd~~q~~R~~il 288 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN-------------------------------------GYNSAALNGDMNQALREQTL 288 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC-------------------------------------CCCEEEeeCCCCHHHHHHHH
Confidence 68999999999999999888642 23478899999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+.|++|+++|||||+++++|||+|.+++||+ ||.+ .+..+|+||+|||||+| ..|.|++++++.+...
T Consensus 289 ~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P---~~~e~yvqRiGRtGRaG--r~G~ai~~v~~~e~~~ 356 (629)
T PRK11634 289 ERLKDGRLDILIATDVAARGLDVERISLVVN----YDIP---MDSESYVHRIGRTGRAG--RAGRALLFVENRERRL 356 (629)
T ss_pred HHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCC---CCHHHHHHHhccccCCC--CcceEEEEechHHHHH
Confidence 9999999999999999999999999999997 6543 25567999999999999 6799999998765433
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=208.20 Aligned_cols=174 Identities=20% Similarity=0.273 Sum_probs=123.0
Q ss_pred cccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 7 MIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 7 ~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
..|++++|||+++ ..++++.+... +..+.....+...-.+.+++..+.... +...+ +..+. . ....++|
T Consensus 270 ~~q~i~~SAT~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~---k~~~l----~~ll~-~-~~~~~~I 339 (475)
T PRK01297 270 ERQTLLFSATFTDDVMNLAKQWTTD-PAIVEIEPENVASDTVEQHVYAVAGSD---KYKLL----YNLVT-Q-NPWERVM 339 (475)
T ss_pred CceEEEEEeecCHHHHHHHHHhccC-CEEEEeccCcCCCCcccEEEEEecchh---HHHHH----HHHHH-h-cCCCeEE
Confidence 5699999999875 56666655443 221111111222222344444433221 11111 11111 1 2346899
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+++++++.+++.|.+. ...++.+||+|++++|..+++.|+
T Consensus 340 VF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~R~~~~~~Fr 382 (475)
T PRK01297 340 VFANRKDEVRRIEERLVKD-------------------------------------GINAAQLSGDVPQHKRIKTLEGFR 382 (475)
T ss_pred EEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEEECCCCHHHHHHHHHHHh
Confidence 9999999999988777432 223788999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
+|+++|||||++|++|||+|++++||+ |+.. .+..+|+||+|||||.| ..|.++++.+.++.
T Consensus 383 ~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P---~s~~~y~Qr~GRaGR~g--~~g~~i~~~~~~d~ 444 (475)
T PRK01297 383 EGKIRVLVATDVAGRGIHIDGISHVIN----FTLP---EDPDDYVHRIGRTGRAG--ASGVSISFAGEDDA 444 (475)
T ss_pred CCCCcEEEEccccccCCcccCCCEEEE----eCCC---CCHHHHHHhhCccCCCC--CCceEEEEecHHHH
Confidence 999999999999999999999999997 5432 25667999999999999 56999999987754
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-18 Score=212.13 Aligned_cols=173 Identities=23% Similarity=0.269 Sum_probs=122.2
Q ss_pred cccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcCCc
Q 043190 7 MIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQGHQ 83 (1492)
Q Consensus 7 ~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 83 (1492)
..|+++||||+++ ..+++...... +..+..-........+.+.++... ...+... +...+ ..+.+
T Consensus 192 ~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~~~~---~~~k~~~--------L~~ll~~~~~~k 259 (572)
T PRK04537 192 TRQTLLFSATLSHRVLELAYEHMNE-PEKLVVETETITAARVRQRIYFPA---DEEKQTL--------LLGLLSRSEGAR 259 (572)
T ss_pred CceEEEEeCCccHHHHHHHHHHhcC-CcEEEeccccccccceeEEEEecC---HHHHHHH--------HHHHHhcccCCc
Confidence 6799999999987 33433332222 222222222222223333333221 1111111 11122 35679
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+|++.|+.+++.|.+. ...+++|||+|++.+|..+++.
T Consensus 260 ~LVF~nt~~~ae~l~~~L~~~-------------------------------------g~~v~~lhg~l~~~eR~~il~~ 302 (572)
T PRK04537 260 TMVFVNTKAFVERVARTLERH-------------------------------------GYRVGVLSGDVPQKKRESLLNR 302 (572)
T ss_pred EEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEEeCCCCHHHHHHHHHH
Confidence 999999999999999888643 2248999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
|++|+++|||||+++++|||+|++++||+ ||.. ++..+|+||+|||||.| ..|.||.++.+.+..
T Consensus 303 Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P---~s~~~yvqRiGRaGR~G--~~G~ai~~~~~~~~~ 367 (572)
T PRK04537 303 FQKGQLEILVATDVAARGLHIDGVKYVYN----YDLP---FDAEDYVHRIGRTARLG--EEGDAISFACERYAM 367 (572)
T ss_pred HHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCC---CCHHHHhhhhcccccCC--CCceEEEEecHHHHH
Confidence 99999999999999999999999999997 5532 35567999999999999 679999998776543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=205.20 Aligned_cols=250 Identities=15% Similarity=0.073 Sum_probs=156.9
Q ss_pred ccEEEEcccCC-ChHHHHHhcCCCCCCceEeecCCccc-ccceEEEEEeeCC--chhHHHHHhhHHHHHHHHHHH-hcCC
Q 043190 8 IRIVGLSATLP-NYLEVAQFLRVNPEMGLFFFDSSYRP-IPLAQQYIGISEP--NFAARNELLSEICYKKVVDSL-RQGH 82 (1492)
Q Consensus 8 ~riv~lSATl~-n~~~~a~~l~~~~~~~~~~~~~~~rp-v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (1492)
.|+++||||+| +.+.+++|++.. . . +....++ .|++++|+..... ........-.......+.... ..++
T Consensus 322 rq~ILmSATl~~dv~~l~~~~~~p--~-~--I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g 396 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIKEFFPNP--A-F--VHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGS 396 (675)
T ss_pred CEEEEEccCCcHhHHHHHHHhcCC--c-E--EEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCC
Confidence 48999999998 477888888632 1 2 2234453 6787776543211 000000000011111222221 2457
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+++++|+.+++.|.+... ...+...||+|++. +.+.+
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~~LHG~Lsq~--eq~l~ 439 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFYIIHGKVPNI--DEILE 439 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEEeccCCcCHH--HHHHH
Confidence 899999999999999988865310 12377889999975 34555
Q ss_pred HH-hCCCccEEEeccccccccCCCcEEEEEeccceecCC-----CCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 163 LF-SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPK-----AGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 163 ~f-~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~-----~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
.| ++|+.+|||||+++|+|||+|++++||+....+.|. ....+..++.||+|||||.+ .|.|+.+++.++.
T Consensus 440 ~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~~~ 516 (675)
T PHA02653 440 KVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLDLL 516 (675)
T ss_pred HHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHHHh
Confidence 65 799999999999999999999999999865333332 11235667999999999984 6999999987653
Q ss_pred HHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHH
Q 043190 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRAL 316 (1492)
Q Consensus 237 ~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~ 316 (1492)
. |+...-.+.|...++..-+.|. ...++ .-+++. -.+.
T Consensus 517 ~----------pI~ri~~~~L~~~vL~lk~~g~-~~~~~--------------------~~ldpP-----------~~~~ 554 (675)
T PHA02653 517 K----------PIKRIDSEFLHNYILYAKYFNL-TLPED--------------------LFVIPS-----------NLDR 554 (675)
T ss_pred H----------HHHHHhHHHHHHHHHHHHHcCC-CCccc--------------------ccCCCC-----------CHHH
Confidence 2 2222222334555544444442 11110 001111 1467
Q ss_pred HHHHHHHHHHhccccccccCCceEeCCC--cchhhhc
Q 043190 317 VTDAARALDKAKMMRFDEKSGNFYCTEL--GRIASHF 351 (1492)
Q Consensus 317 ~~~~l~~L~~~~~i~~~~~~~~~~~t~~--G~~~s~~ 351 (1492)
+..|++.|...|+.+ + .+|.+ |+-+|..
T Consensus 555 l~~A~~~L~~lga~~-----~--~l~~l~~~~~~~~~ 584 (675)
T PHA02653 555 LRKTEEYIDSFNISI-----E--KWYEILSNYYVNML 584 (675)
T ss_pred HHHHHHHHHHcCCCc-----h--hhhhhhccccHHHH
Confidence 889999999999763 1 58888 8766554
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-18 Score=206.17 Aligned_cols=179 Identities=22% Similarity=0.283 Sum_probs=128.5
Q ss_pred CCCcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccc-cceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--
Q 043190 4 TQRMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPI-PLAQQYIGISEPNFAARNELLSEICYKKVVDSL-- 78 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (1492)
++...|+++||||++. ..+++.++... +..+. .....+.. .+.+.+.... ....+... +...+
T Consensus 175 ~~~~~q~~~~SAT~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~i~~~~~~~~--~~~~k~~~--------l~~l~~~ 242 (434)
T PRK11192 175 TRWRKQTLLFSATLEGDAVQDFAERLLND-PVEVE-AEPSRRERKKIHQWYYRAD--DLEHKTAL--------LCHLLKQ 242 (434)
T ss_pred CccccEEEEEEeecCHHHHHHHHHHHccC-CEEEE-ecCCcccccCceEEEEEeC--CHHHHHHH--------HHHHHhc
Confidence 3456799999999974 77888888755 22221 22222211 2323332221 11112111 12222
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
....++||||+|+..++.++..|.+. ...++++||+|++.+|.
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~g~~~~~~R~ 285 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKA-------------------------------------GINCCYLEGEMVQAKRN 285 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhC-------------------------------------CCCEEEecCCCCHHHHH
Confidence 24678999999999999999888642 12388999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|.++|||||+++++|||+|++++||+ ||.. .+...|+||+|||||.| ..|.|+.+++..+...
T Consensus 286 ~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p---~s~~~yiqr~GR~gR~g--~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 286 EAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMP---RSADTYLHRIGRTGRAG--RKGTAISLVEAHDHLL 356 (434)
T ss_pred HHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCC---CCHHHHhhcccccccCC--CCceEEEEecHHHHHH
Confidence 9999999999999999999999999999999997 6543 35567999999999999 6799999998766544
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 357 ~~ 358 (434)
T PRK11192 357 LG 358 (434)
T ss_pred HH
Confidence 33
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-16 Score=204.88 Aligned_cols=360 Identities=19% Similarity=0.230 Sum_probs=209.0
Q ss_pred CCCCCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
||+ ++|.|.+.+.. .+.+++++++.||||+|||++|++|++.... .+.+++|.+||++|..|++.+-...+.+.
T Consensus 243 ~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~ 319 (850)
T TIGR01407 243 GLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEKDIPLLNEI 319 (850)
T ss_pred CCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 666 89999985553 3457889999999999999999999988765 36799999999999999876422234443
Q ss_pred cC--CEEEEEcC----------------------------------------CCCc----------------c-------
Q 043190 762 LG--KEMVEMTG----------------------------------------DYTP----------------D------- 776 (1492)
Q Consensus 762 ~g--~~v~~~~g----------------------------------------~~~~----------------~------- 776 (1492)
+| +++..+.| |.+. +
T Consensus 320 ~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~~c 399 (850)
T TIGR01407 320 LNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSKKD 399 (850)
T ss_pred cCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCCCC
Confidence 33 44444333 2110 0
Q ss_pred -----------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC----CCccHH-----HHHHH---
Q 043190 777 -----------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA----ERGPIL-----EVIVS--- 833 (1492)
Q Consensus 777 -----------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~----~~g~~~-----~~i~~--- 833 (1492)
.+....++|+|+...-+..-+.. ....+....++||||||.+.+ ..+..+ ..++.
T Consensus 400 ~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~--~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l~ 477 (850)
T TIGR01407 400 LFYEVDFYNRAQKNAEQAQILITNHAYLITRLVD--NPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLIG 477 (850)
T ss_pred CCccccHHHHHHHHHhcCCEEEecHHHHHHHhhc--ccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHHH
Confidence 00011479999988755332221 123456678999999997631 011000 00000
Q ss_pred --------------------------------------------------------------HHHHh----------h--
Q 043190 834 --------------------------------------------------------------RMRYI----------S-- 839 (1492)
Q Consensus 834 --------------------------------------------------------------~l~~~----------~-- 839 (1492)
.+..+ .
T Consensus 478 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 557 (850)
T TIGR01407 478 KGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLKE 557 (850)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0
Q ss_pred --------h------c------------------cCCceEEEEEcCCCC---ChHHHHHHhcCCcceeEec-CCCcc-cc
Q 043190 840 --------S------Q------------------TERAVRFIGLSTALA---NAGDLADWLGVGEIGLFNF-KPSVR-PV 882 (1492)
Q Consensus 840 --------~------~------------------~~~~~~ii~lSATl~---~~~~~~~~l~~~~~~~~~~-~~~~r-~~ 882 (1492)
. . ......+|++|||+. +.+-+.+.+|........+ .+++. ..
T Consensus 558 ~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~ 637 (850)
T TIGR01407 558 GHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAE 637 (850)
T ss_pred CCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHH
Confidence 0 0 011246899999997 5677888898865332222 11111 11
Q ss_pred CcEEEEe-ccCCccccccccccChhHHHHHhh--cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHH
Q 043190 883 PLEVHIQ-GYPGKFYCPRMNSMNKPAYAAICT--HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQ 959 (1492)
Q Consensus 883 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 959 (1492)
...+.+. ..+....... ......+...+.. ...++++|||++|.+..+.++..|.....
T Consensus 638 ~~~l~v~~d~~~~~~~~~-~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~----------------- 699 (850)
T TIGR01407 638 NQRVLIPTDAPAIQNKSL-EEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE----------------- 699 (850)
T ss_pred cCEEEecCCCCCCCCCCh-HHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc-----------------
Confidence 1112111 1111100000 0001111111111 12457899999999999999887743211
Q ss_pred HHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcE---EEEecceeeeCc---
Q 043190 960 MVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL---VIIKGTEYYDGK--- 1033 (1492)
Q Consensus 960 ~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~---~VI~~~~~~~~~--- 1033 (1492)
..+..++..+.. ..|..+++.|++|+..||+||+.+++|||+|+.. +||.+-++-.+.
T Consensus 700 ---------------~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~ 763 (850)
T TIGR01407 700 ---------------FEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPL 763 (850)
T ss_pred ---------------ccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHH
Confidence 012223333333 5788999999999999999999999999999864 345444432221
Q ss_pred ------------cCccccC--C--HHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCc
Q 043190 1034 ------------TKRYVDF--P--ITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1034 ------------~~~~~~~--~--~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~p 1084 (1492)
...++++ | ...+.|.+||.-|.. ++.|..+++-..-....|.+.+-+..|
T Consensus 764 ~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~-~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 764 TKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRE-NDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccC-CceEEEEEEccccccchHHHHHHHhCC
Confidence 1123333 3 457899999999975 457877777555445556666555555
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=210.34 Aligned_cols=182 Identities=24% Similarity=0.351 Sum_probs=134.5
Q ss_pred cccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
+.+++++|||.+. ..++.+|++.. +...+ +.+..|| .+...+ ..... +... +.+.+.. ..+.++
T Consensus 162 ~~~vi~lTAT~~~~~~~~i~~~l~~~-~~~~~-~~~~~r~-nl~~~v--~~~~~---~~~~----l~~~l~~--~~~~~~ 227 (591)
T TIGR01389 162 QVPRIALTATADAETRQDIRELLRLA-DANEF-ITSFDRP-NLRFSV--VKKNN---KQKF----LLDYLKK--HRGQSG 227 (591)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCCC-CCCeE-ecCCCCC-CcEEEE--EeCCC---HHHH----HHHHHHh--cCCCCE
Confidence 4569999999876 56799999865 22232 3344454 232221 12111 1111 1111111 236789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
||||+||++|+.+++.|... ...++.|||||++++|..+++.|
T Consensus 228 IIf~~sr~~~e~la~~L~~~-------------------------------------g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQ-------------------------------------GISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred EEEECcHHHHHHHHHHHHhC-------------------------------------CCCEEEEECCCCHHHHHHHHHHH
Confidence 99999999999999888642 22478999999999999999999
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhc
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLT 244 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~ 244 (1492)
++|.++|||||+++++|||+|++++||+ |++.. +..+|+||+|||||.| ..|.|+++++..+...+..++.
T Consensus 271 ~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~---s~~~y~Q~~GRaGR~G--~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 271 LYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG---NLESYYQEAGRAGRDG--LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred HcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC---CHHHHhhhhccccCCC--CCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999999999996 66543 5567999999999999 6799999999998888887776
Q ss_pred CCCc
Q 043190 245 SQLP 248 (1492)
Q Consensus 245 ~~~~ 248 (1492)
...+
T Consensus 342 ~~~~ 345 (591)
T TIGR01389 342 QSEA 345 (591)
T ss_pred ccCC
Confidence 6554
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=196.09 Aligned_cols=93 Identities=39% Similarity=0.613 Sum_probs=83.9
Q ss_pred hHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhh
Q 043190 135 KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFG 214 (1492)
Q Consensus 135 ~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~G 214 (1492)
..+.+++-+|||+|||||.+..|..||-+||+|.+.||+||.||+.|||+|.++||+-|.. -..+.+.|.||+|
T Consensus 955 ~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs------LQL~plny~QmaG 1028 (1330)
T KOG0949|consen 955 FEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS------LQLDPLNYKQMAG 1028 (1330)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc------cccCchhHHhhhc
Confidence 4577888999999999999999999999999999999999999999999999999996543 2356677999999
Q ss_pred ccCCCCCCccceEEEEeCC
Q 043190 215 RAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 215 RAGR~~~d~~G~~i~~~~~ 233 (1492)
||||.|||..|.++.+.-+
T Consensus 1029 RAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 1029 RAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred cccccccccccceEEEeCc
Confidence 9999999999999999654
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-18 Score=187.87 Aligned_cols=198 Identities=19% Similarity=0.289 Sum_probs=146.3
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.++++.|.++||||+.. .+|++..-..+ |-.+|+-.+..++..|.+.|+.+.+.....+...+..+ +... -.
T Consensus 354 lcpk~RQTmLFSATMteeVkdL~slSL~k-Pvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l----~~rt--f~ 426 (691)
T KOG0338|consen 354 LCPKNRQTMLFSATMTEEVKDLASLSLNK-PVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL----ITRT--FQ 426 (691)
T ss_pred hccccccceeehhhhHHHHHHHHHhhcCC-CeEEEeCCccccchhhhHHHheeccccccccHHHHHHH----HHHh--cc
Confidence 46889999999999986 77777766555 55666544455666688888877654332222222111 1112 24
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
..++||+.|++.|.++--.+ .+++..+|-.||.|++++|..+.
T Consensus 427 ~~~ivFv~tKk~AHRl~Ill-------------------------------------GLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILL-------------------------------------GLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred cceEEEEehHHHHHHHHHHH-------------------------------------HHhhchhhhhcccccHHHHHHHH
Confidence 67999999999886553222 23444577789999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|+++++.|||||++++||+|++.+.+||+ |+.+. +...|+||+||+.|+| +.|.+|.++..++...++.
T Consensus 470 ~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~---t~e~Y~HRVGRTARAG--RaGrsVtlvgE~dRkllK~ 540 (691)
T KOG0338|consen 470 EKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK---TIEHYLHRVGRTARAG--RAGRSVTLVGESDRKLLKE 540 (691)
T ss_pred HHHHhccCCEEEEechhhccCCccceeEEEe----ccCch---hHHHHHHHhhhhhhcc--cCcceEEEeccccHHHHHH
Confidence 9999999999999999999999999999998 54322 4456999999999999 7899999999988777777
Q ss_pred HhcCCCccccch
Q 043190 242 LLTSQLPIESQF 253 (1492)
Q Consensus 242 ~~~~~~~ies~l 253 (1492)
.+.+.....+.+
T Consensus 541 iik~~~~a~~kl 552 (691)
T KOG0338|consen 541 IIKSSTKAGSKL 552 (691)
T ss_pred HHhhhhhcccch
Confidence 666654444443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=191.33 Aligned_cols=183 Identities=22% Similarity=0.341 Sum_probs=138.5
Q ss_pred cccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCc
Q 043190 7 MIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQ 83 (1492)
Q Consensus 7 ~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (1492)
++.+++|+||-+. .+|+.+-|+.. ..++| ..+-.|| +.++.+..... ...+.. .+.+.. ..+++
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l~-~~~~~-~~sfdRp----Ni~~~v~~~~~-----~~~q~~--fi~~~~~~~~~~ 232 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGLQ-DANIF-RGSFDRP----NLALKVVEKGE-----PSDQLA--FLATVLPQLSKS 232 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHHHhcCC-CcceE-EecCCCc----hhhhhhhhccc-----HHHHHH--HHHhhccccCCC
Confidence 6789999999876 78888888876 33343 4455566 22222221110 011111 112111 34567
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
.||||.||+.++.+|++|.+. +..++++||||+.++|..++++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~-------------------------------------g~~a~~YHaGl~~~eR~~~q~~ 275 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN-------------------------------------GISAGAYHAGLSNEERERVQQA 275 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC-------------------------------------CCceEEecCCCCHHHHHHHHHH
Confidence 899999999999999999764 2238999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHh
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLL 243 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~ 243 (1492)
|..+.++|+|||..+.||||-|+++.||+ ||.+. +..+|.|-+|||||.| ....|++++++.|......++
T Consensus 276 f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~---s~EsYyQE~GRAGRDG--~~a~aill~~~~D~~~~~~~i 346 (590)
T COG0514 276 FLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG---SIESYYQETGRAGRDG--LPAEAILLYSPEDIRWQRYLI 346 (590)
T ss_pred HhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC---CHHHHHHHHhhccCCC--CcceEEEeeccccHHHHHHHH
Confidence 99999999999999999999999999997 77543 6678999999999999 789999999999877666666
Q ss_pred cCCCc
Q 043190 244 TSQLP 248 (1492)
Q Consensus 244 ~~~~~ 248 (1492)
....|
T Consensus 347 ~~~~~ 351 (590)
T COG0514 347 EQSKP 351 (590)
T ss_pred Hhhcc
Confidence 66555
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=174.82 Aligned_cols=183 Identities=20% Similarity=0.241 Sum_probs=132.3
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCC--cc--cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSS--YR--PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~--~r--pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
..|...|..+||||+.+ .+.+-.+.....+..++-+. .- +-.|.+.|+.++.... +...+..+...-
T Consensus 180 ~lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk-------daYLv~~Lr~~~ 250 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK-------DAYLVHLLRDFE 250 (442)
T ss_pred cCCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh-------HHHHHHHHhhhh
Confidence 34667899999999976 44455554422222222222 22 2235556665543321 111222222221
Q ss_pred -hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 -~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
++.+.++||+++.++|+.++..|... +..++..|+-|++.+|
T Consensus 251 ~~~~~simIFvnttr~cQ~l~~~l~~l-------------------------------------e~r~~~lHs~m~Q~eR 293 (442)
T KOG0340|consen 251 NKENGSIMIFVNTTRECQLLSMTLKNL-------------------------------------EVRVVSLHSQMPQKER 293 (442)
T ss_pred hccCceEEEEeehhHHHHHHHHHHhhh-------------------------------------ceeeeehhhcchHHHH
Confidence 24789999999999999888777543 3348888999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
......||++.+++|+||++++||+|+|.+..||+...+-||+ +|+||+||+.|+| +.|.+|-++++.+.+
T Consensus 294 ~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~-------~yiHRvGRtARAG--R~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 294 LAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPK-------DYIHRVGRTARAG--RKGMAISIVTQRDVE 364 (442)
T ss_pred HHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHH-------HHHHhhcchhccc--CCcceEEEechhhHH
Confidence 9999999999999999999999999999999999966665555 4999999999999 889999999887766
Q ss_pred HHH
Q 043190 238 YYL 240 (1492)
Q Consensus 238 ~~~ 240 (1492)
.+.
T Consensus 365 l~~ 367 (442)
T KOG0340|consen 365 LLQ 367 (442)
T ss_pred HHH
Confidence 554
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=181.42 Aligned_cols=311 Identities=16% Similarity=0.180 Sum_probs=185.9
Q ss_pred CCCCCHHHHHHHHhhh----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 686 FSHFNPIQTQIFHILY----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
-..++++|..|+..+. ++.+.+++++.||+|||..+...|.+.++.+..+++|+++-+++|+.|.++.+...+ +.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~-P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFL-PF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhC-CC
Confidence 3468999999998654 344579999999999999998888888877778999999999999999999887744 33
Q ss_pred cCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc-cC--ccccCcccEEEEecccccCCCCccHHHHHHHHHHHh
Q 043190 762 LGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW-HS--RNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI 838 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~-~~--~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~ 838 (1492)
+..+..+.+.... ..++|.++|...+....... .. +.....+++|||||||+-. ...+..++..+-.
T Consensus 242 -~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---~~~~~~I~dYFdA- 311 (875)
T COG4096 242 -GTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---YSEWSSILDYFDA- 311 (875)
T ss_pred -ccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---HhhhHHHHHHHHH-
Confidence 4444444432211 25799999999886666553 11 2234568999999999421 1112244443321
Q ss_pred hhccCCceEEEEEcCCCCChHHHH--HHh-cCCcceeEec--------CCCcccc--CcEEEEeccCC------------
Q 043190 839 SSQTERAVRFIGLSTALANAGDLA--DWL-GVGEIGLFNF--------KPSVRPV--PLEVHIQGYPG------------ 893 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl~~~~~~~--~~l-~~~~~~~~~~--------~~~~r~~--~l~~~~~~~~~------------ 893 (1492)
..++++||+.+..+.. .++ |.+ ...+.. -..++.+ ++.....|..-
T Consensus 312 --------~~~gLTATP~~~~d~~T~~~F~g~P-t~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 312 --------ATQGLTATPKETIDRSTYGFFNGEP-TYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred --------HHHhhccCcccccccccccccCCCc-ceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 2356799986633332 344 222 111110 0112222 11111111110
Q ss_pred ------ccccccc--ccc-----Chh---HHHHHhhc----CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC
Q 043190 894 ------KFYCPRM--NSM-----NKP---AYAAICTH----SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM 953 (1492)
Q Consensus 894 ------~~~~~~~--~~~-----~~~---~~~~l~~~----~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~ 953 (1492)
..+.... ..+ ... .+...... ..-+++||||.+..+|+.+...+.+..+..
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~--------- 453 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY--------- 453 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc---------
Confidence 0000000 000 000 11111111 124689999999999999998886654321
Q ss_pred ChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh-cCCceEEEeccccccccCCCCcEEEEecceeeeC
Q 043190 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA-NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~-~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~ 1032 (1492)
-+.-+..+.+.- .+.+..+-+-+. +.-.+|.|+.+++.+|||+|.+..++- ..
T Consensus 454 --------------------~~~~a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF-----~r 507 (875)
T COG4096 454 --------------------NGRYAMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF-----DR 507 (875)
T ss_pred --------------------cCceEEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee-----hh
Confidence 012234444443 233333433333 344689999999999999999877663 22
Q ss_pred ccCccccCCHHHHHHhhcccCCCC
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQ 1056 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g 1056 (1492)
+. .|...|.||+||+-|.-
T Consensus 508 ~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 508 KV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hh-----hhHHHHHHHhcCccccC
Confidence 21 17889999999999964
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=172.29 Aligned_cols=280 Identities=13% Similarity=0.189 Sum_probs=210.2
Q ss_pred cccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCC
Q 043190 1183 YLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRL 1262 (1492)
Q Consensus 1183 ~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~ 1262 (1492)
++.+.|+.+|...+....+.+.+|+++|.+.||..+ . .+.|..-...|+++||+|-
T Consensus 226 gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~-------------~-----------pk~pk~~~ekll~dhlnr~ 281 (610)
T COG5407 226 GVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRM-------------N-----------PKGPKCTLEKLLGDHLNRA 281 (610)
T ss_pred ceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHh-------------C-----------CCCCchhHHHHHHHHHhHh
Confidence 467889999999998889999999999999997653 1 1233344556999999997
Q ss_pred CCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCC
Q 043190 1263 DLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGIS 1342 (1492)
Q Consensus 1263 ~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~ 1342 (1492)
.-. ++. ..+|+.++.-|+.|+.+|++.++++..+.+.+.+.|||+|++..+-..+++|+|+...+.++.+.-+.|.
T Consensus 282 ~s~--~fn--~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~ 357 (610)
T COG5407 282 RSV--EFN--EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIE 357 (610)
T ss_pred hcc--cch--heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhh
Confidence 643 343 6789999999999999999999999999999999999999999887789999999999999999888899
Q ss_pred CHHHHhcCCHHHHhhhhCCc---hHHHHHHHhcCCCceEE---EEEEEeccC-C--CCCeEEEEEEEEecc---------
Q 043190 1343 TVQQLLDIPKENLQTVIGNF---PVSRLHQDLQRFPRIQV---KLRLQRRDI-D--GENSLTLNIRMDKMN--------- 1404 (1492)
Q Consensus 1343 s~~~l~~~~~~~~~~~l~~~---~~~~i~~~~~~~P~i~i---~~~~~~~~~-~--~~~~~~l~v~l~~~~--------- 1404 (1492)
++.++..+.+++....+++. +.+++..+++.+|++.+ .+-+.++.. . +...+.+++-+....
T Consensus 358 ~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts~~ 437 (610)
T COG5407 358 GMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTSAL 437 (610)
T ss_pred hhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCccccccc
Confidence 99999999888888887653 57889999999999876 232222211 1 122233333332211
Q ss_pred -----------------------CCCCCCccccccCCCCccceEEEEEEeCCCCeEE----EEEEee-cCCcceEEEEec
Q 043190 1405 -----------------------SWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELY----ALKRIS-FSDRLNTHMELP 1456 (1492)
Q Consensus 1405 -----------------------~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~----~~~r~~-~~~~~~~~~~~p 1456 (1492)
........|||+||......||+.|.+.+++.++ +++.++ .......++++|
T Consensus 438 ~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Iip~~Si~~v~K~~~d~Ri~~dv~ 517 (610)
T COG5407 438 NVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYIIPGGSIATVSKVTLDRRIQGDVA 517 (610)
T ss_pred ccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEEeCCccccccchhhhhcccccccC
Confidence 0112224889999999999999999999988765 334443 111112445555
Q ss_pred CCCCCcceEEEEEEeCCCCCccEEEEEEEEEeccc
Q 043190 1457 SGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQSV 1491 (1492)
Q Consensus 1457 ~~~~~~~~~~v~~~sd~y~G~D~~~~i~~~v~~~~ 1491 (1492)
.- .+...+.+.+++-.|+|.+...-|.|-+.+-+
T Consensus 518 pv-d~T~~~ql~~~ap~~vg~f~~~~ivm~t~d~~ 551 (610)
T COG5407 518 PV-DKTGGKQLIVHAPFMVGAFSVKWIVMLTVDNV 551 (610)
T ss_pred cc-ccccceeeeecCchhhccceeeeEEEEeechh
Confidence 32 35667789999999999999888888776544
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.9e-16 Score=194.05 Aligned_cols=328 Identities=14% Similarity=0.116 Sum_probs=173.5
Q ss_pred CCCHHHHHHHHhhhc---------CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 688 HFNPIQTQIFHILYH---------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~---------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.++++|..++..+++ +.+..++..|||||||+.+...+...+...+..++|+++|+++|..|..+.|....
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 378899998887642 13589999999999999988777665554457899999999999999999887642
Q ss_pred hhccCCEEEEEcCCCCcch-h--ccCCCcEEEECchhhhHhhhcccCccccCc-ccEEEEecccccCCCCccHHHHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDL-M--ALLSADIIISTPEKWDGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSR 834 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~-~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~-i~liViDEaH~l~~~~g~~~~~i~~~ 834 (1492)
.. .+ ...+.. .+. . .....+|+|+|.+++...+........... --+||+||||+... | . ....
T Consensus 318 ~~----~~-~~~~s~-~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~---~~~~ 385 (667)
T TIGR00348 318 KD----CA-ERIESI-AELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-E---LAKN 385 (667)
T ss_pred CC----CC-cccCCH-HHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-H---HHHH
Confidence 11 01 001110 001 1 112468999999998653332211111111 12899999997532 1 1 2222
Q ss_pred HHHhhhccCCceEEEEEcCCCCChHH--HHHHhcCCc-ceeEec--CCC---ccccCcEEEEec----cCCcc-------
Q 043190 835 MRYISSQTERAVRFIGLSTALANAGD--LADWLGVGE-IGLFNF--KPS---VRPVPLEVHIQG----YPGKF------- 895 (1492)
Q Consensus 835 l~~~~~~~~~~~~ii~lSATl~~~~~--~~~~l~~~~-~~~~~~--~~~---~r~~~l~~~~~~----~~~~~------- 895 (1492)
++.. -++..++|+|||+-...+ -...++... ..++.+ ... .-.+++...... .....
T Consensus 386 l~~~----~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 386 LKKA----LKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHhh----CCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 3221 135678999999854211 112222110 011111 000 001111100000 00000
Q ss_pred -ccc--c-cc-----ccC----------------hhHHHHHh----hc--CCCCCeeEEecChHHHHHHHHHHHHHHhcC
Q 043190 896 -YCP--R-MN-----SMN----------------KPAYAAIC----TH--SPTKPVLIFVSSRRQTRLTALDLIQFAASD 944 (1492)
Q Consensus 896 -~~~--~-~~-----~~~----------------~~~~~~l~----~~--~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~ 944 (1492)
+.. . .. .+. ......+. .. ..+++++|||.++..|...+..|.+..+..
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 000 0 00 000 00011111 11 225899999999999999998887654322
Q ss_pred C-CCcccCCCC---hHHHHHHHhhcCcHHHHHHhccceEeecCCC-CHHHHHHHHHHHhc-CCceEEEeccccccccCCC
Q 043190 945 E-TPRQFLGMP---EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL-NDKDRSLVEELFAN-NKIQVLVCTSTLAWGVNLP 1018 (1492)
Q Consensus 945 ~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l-~~~~R~~v~~~f~~-g~~~vLvaT~~l~~Gvdip 1018 (1492)
. ......... ...... ..+.+.. .++.- ..+....+.+.|++ +.++|||.++.+.+|+|.|
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP 608 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRD---------YNKHIRT----KFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAP 608 (667)
T ss_pred cCCeeEEecCCccchhHHHH---------HHHHhcc----ccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCC
Confidence 0 000001000 000000 0010000 00000 01234568888976 6899999999999999999
Q ss_pred CcEEEEecceeeeCccCccccCCHHHHHHhhcccCCC
Q 043190 1019 AHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRP 1055 (1492)
Q Consensus 1019 ~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~ 1055 (1492)
.+.+++. +. ++.-..++|++||+.|.
T Consensus 609 ~l~tLyl-----dK------plk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 609 ILNTLYL-----DK------PLKYHGLLQAIARTNRI 634 (667)
T ss_pred ccceEEE-----ec------cccccHHHHHHHHhccc
Confidence 9988774 21 12223589999999995
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=200.51 Aligned_cols=175 Identities=18% Similarity=0.294 Sum_probs=123.3
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
...++|+++|||| |.++.++..+....+..+....+..| .|+..++.... ...+...+...+..++|
T Consensus 596 ~~~~~~vL~~SAT-piprtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----------~~~i~~~i~~el~~g~q 662 (926)
T TIGR00580 596 LRTSVDVLTLSAT-PIPRTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----------PELVREAIRRELLRGGQ 662 (926)
T ss_pred cCCCCCEEEEecC-CCHHHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----------HHHHHHHHHHHHHcCCe
Confidence 3567899999999 45556554443321111211112222 34544433211 01122334444567899
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
++|||+++++++.+++.|.+..+ ...++.+||+|++++|..+++.
T Consensus 663 v~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~lHG~m~~~eRe~im~~ 707 (926)
T TIGR00580 663 VFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAIAHGQMTENELEEVMLE 707 (926)
T ss_pred EEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEEecCCCCHHHHHHHHHH
Confidence 99999999999999888865321 1248999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|++|+++|||||+++++|||+|.+++||. ++++. +....+.||+||+||.| ..|.|+++++++
T Consensus 708 F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~--~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 708 FYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK--FGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred HHcCCCCEEEECChhhcccccccCCEEEE----ecCCC--CCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 99999999999999999999999888874 44432 22335889999999998 789999998654
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-16 Score=172.86 Aligned_cols=341 Identities=12% Similarity=0.026 Sum_probs=222.9
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc---C
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL---G 763 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~---g 763 (1492)
+.+..+|.+++..+- .|+++++.-.|.+||++++.++....+...+....+++.|+++++....+.+.-.+.... +
T Consensus 285 E~~~~~~~~~~~~~~-~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 285 ESGIAISLELLKFAS-EGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred cchhhhhHHHHhhhh-hcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 468899999999885 899999999999999999999888776665678899999999998764332211111110 1
Q ss_pred CEEEEEcCCCCcchhc--cCCCcEEEECchhhh-Hhhhcc-cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLMA--LLSADIIISTPEKWD-GISRNW-HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~--~~~~~Iiv~Tpe~l~-~l~~~~-~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~ 839 (1492)
--|....|+.....+. ..+.+++++.|.... ..+.+. ....++-...++++||+|.+...++......+.++..+.
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~ 443 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLI 443 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHH
Confidence 1233344555544433 347899999998752 233321 123345567899999999876666666666666554443
Q ss_pred hc--cCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCccccCcEEEEec-cCCccccccccccC--hhHHHHHhh
Q 043190 840 SQ--TERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG-YPGKFYCPRMNSMN--KPAYAAICT 913 (1492)
Q Consensus 840 ~~--~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~ 913 (1492)
.. -..+.+++-.|||+.+. .-..+.+++....++..+.+.....+-+.... .+-.....+..... ..++..+
T Consensus 444 ~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~-- 521 (1034)
T KOG4150|consen 444 KGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEM-- 521 (1034)
T ss_pred HHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHH--
Confidence 22 23578999999999774 44566677766555544333222222211111 00000000000000 0111112
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
...+-++|-||++|+-|+.+....++.+.... .. +--.|..+.||-..+||+++
T Consensus 522 i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~----------------------~~----LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 522 VQHGLRCIAFCPSRKLCELVLCLTREILAETA----------------------PH----LVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh----------------------HH----HHHHHHhhcCccchhhHHHH
Confidence 23467899999999999987766554432110 01 11235567899999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+...-.|++.-+|||++++-|||+...+.|++.. +++|.+++.|..|||||.. +++.++.+..
T Consensus 576 E~~~F~G~L~giIaTNALELGIDIG~LDAVl~~G----------FP~S~aNl~QQ~GRAGRRN--k~SLavyva~ 638 (1034)
T KOG4150|consen 576 ESDLFGGKLCGIIATNALELGIDIGHLDAVLHLG----------FPGSIANLWQQAGRAGRRN--KPSLAVYVAF 638 (1034)
T ss_pred HHHhhCCeeeEEEecchhhhccccccceeEEEcc----------CchhHHHHHHHhccccccC--CCceEEEEEe
Confidence 9999999999999999999999999999999733 6778999999999999976 5555555543
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=173.30 Aligned_cols=181 Identities=21% Similarity=0.272 Sum_probs=130.5
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEe-ecCCcccc---cceEEEEEeeCCchhHHHHHhhHHHHHHHHHH
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFF-FDSSYRPI---PLAQQYIGISEPNFAARNELLSEICYKKVVDS 77 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~-~~~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1492)
..++..|-.+||||.|. .++++.-.... ..+|+ ......+. -+++-|+..+... +.. .++..+.+.
T Consensus 257 ~lpk~rqt~LFSAT~~~kV~~l~~~~L~~--d~~~v~~~d~~~~~The~l~Qgyvv~~~~~---~f~----ll~~~LKk~ 327 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQPSKVKDLARGALKR--DPVFVNVDDGGERETHERLEQGYVVAPSDS---RFS----LLYTFLKKN 327 (543)
T ss_pred hccccceeeEeeCCCcHHHHHHHHHhhcC--CceEeecCCCCCcchhhcccceEEeccccc---hHH----HHHHHHHHh
Confidence 45788999999999997 88888776543 22332 22222221 2444444443221 111 123333333
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
. ....+||||+|...+...|..|... ...|--.||++++..|
T Consensus 328 ~-~~~KiiVF~sT~~~vk~~~~lL~~~-------------------------------------dlpv~eiHgk~~Q~kR 369 (543)
T KOG0342|consen 328 I-KRYKIIVFFSTCMSVKFHAELLNYI-------------------------------------DLPVLEIHGKQKQNKR 369 (543)
T ss_pred c-CCceEEEEechhhHHHHHHHHHhhc-------------------------------------CCchhhhhcCCccccc
Confidence 2 2378999999999998888777532 1225556999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+...|++-+--||+||++.|||+|+|+++.||. |+|+. ....|+||+||+||.| ..|+++++..+.++.
T Consensus 370 T~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~---d~~~YIHRvGRTaR~g--k~G~alL~l~p~El~ 440 (543)
T KOG0342|consen 370 TSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS---DPEQYIHRVGRTAREG--KEGKALLLLAPWELG 440 (543)
T ss_pred chHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC---CHHHHHHHhccccccC--CCceEEEEeChhHHH
Confidence 99999999999999999999999999999999996 66554 4456999999999998 889999999888865
Q ss_pred HH
Q 043190 238 YY 239 (1492)
Q Consensus 238 ~~ 239 (1492)
.+
T Consensus 441 Fl 442 (543)
T KOG0342|consen 441 FL 442 (543)
T ss_pred HH
Confidence 43
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=183.88 Aligned_cols=354 Identities=17% Similarity=0.206 Sum_probs=200.8
Q ss_pred CCCCCCHHHHHH---HHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQI---FHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~---i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
||+ +++-|.+. +...+.+++.+++.|+||+|||++|++|++... .+.++++.+||++|+.|++..-...+.+.
T Consensus 243 ~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~ 318 (820)
T PRK07246 243 GLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---DQRQIIVSVPTKILQDQIMAEEVKAIQEV 318 (820)
T ss_pred CCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 443 89999994 444556788999999999999999999988754 26899999999999999954333335555
Q ss_pred cCCEEEEEcC----------------------------------------CCCcc-----h-------------------
Q 043190 762 LGKEMVEMTG----------------------------------------DYTPD-----L------------------- 777 (1492)
Q Consensus 762 ~g~~v~~~~g----------------------------------------~~~~~-----~------------------- 777 (1492)
+++++..+.| |.+.- .
T Consensus 319 ~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~ 398 (820)
T PRK07246 319 FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLF 398 (820)
T ss_pred cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCc
Confidence 5665554433 21100 0
Q ss_pred ----------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC---C-CccH--HHHHH---------
Q 043190 778 ----------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA---E-RGPI--LEVIV--------- 832 (1492)
Q Consensus 778 ----------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~---~-~g~~--~~~i~--------- 832 (1492)
+....++|+|+...-|...+.. ...+...+++||||||.+.+ . .+.. +..+.
T Consensus 399 ~~~cf~~~ar~~a~~AdivItNHall~~~~~~---~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 399 YDYDFWKRSYEKAKTARLLITNHAYFLTRVQD---DKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred chhhHHHHHHHHHHhCCEEEEchHHHHHHHhh---ccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 0001479999998765443322 22367899999999997632 1 1110 00000
Q ss_pred -------------------------------------HH----HHHhh--------------h------c----------
Q 043190 833 -------------------------------------SR----MRYIS--------------S------Q---------- 841 (1492)
Q Consensus 833 -------------------------------------~~----l~~~~--------------~------~---------- 841 (1492)
.. +..+. . .
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 00 00000 0 0
Q ss_pred --------------cCCceEEEEEcCCCC--ChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 842 --------------TERAVRFIGLSTALA--NAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 842 --------------~~~~~~ii~lSATl~--~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
......+|++|||++ +..++.+.+|............+............+..... .......
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~-~~~~~~~ 634 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTET-SDEVYAE 634 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCC-ChHHHHH
Confidence 011246899999995 22247778887543222211111111111111112211100 0001111
Q ss_pred hHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 906 PAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 906 ~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
.+...+.. ...++++||+++|.+..+.++..|... ...+ ...|.
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~----------------------------------~~~~-l~Qg~ 679 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW----------------------------------QVSH-LAQEK 679 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc----------------------------------CCcE-EEeCC
Confidence 11111111 135689999999999998887766221 1122 22221
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCC---cEEEEecceeeeCc---------------cCccccC--C--H
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA---HLVIIKGTEYYDGK---------------TKRYVDF--P--I 1042 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~---~~~VI~~~~~~~~~---------------~~~~~~~--~--~ 1042 (1492)
-. .|..+.+.|++++-.||++|..+.+|||+|+ ..+||.+-++-.|. ...++++ | +
T Consensus 680 ~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~ 757 (820)
T PRK07246 680 NG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTI 757 (820)
T ss_pred Cc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHH
Confidence 11 2456889999998899999999999999973 33455443432221 1123333 3 4
Q ss_pred HHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCc
Q 043190 1043 TDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1043 ~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~p 1084 (1492)
..+.|-+||.-|.. ++.|.++++-.+-....|.+.+-+.+|
T Consensus 758 iklkQg~GRLIRs~-~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 758 LRLKQAIGRTMRRE-DQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHHHHHhcccccCC-CCcEEEEEECCcccccHHHHHHHHhCC
Confidence 57899999999964 567877776555444456555544444
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=177.02 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=97.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |++.|.-..-.++ .|+ |....||+|||+++.+|++..... |..+-+++|+--||.+-++.+...+.. +|+
T Consensus 76 g~r-~ydvQlig~l~Ll-~G~--VaEM~TGEGKTLvA~l~a~l~AL~--G~~VhvvT~NdyLA~RDae~m~~ly~~-LGL 148 (764)
T PRK12326 76 GLR-PFDVQLLGALRLL-AGD--VIEMATGEGKTLAGAIAAAGYALQ--GRRVHVITVNDYLARRDAEWMGPLYEA-LGL 148 (764)
T ss_pred CCC-cchHHHHHHHHHh-CCC--cccccCCCCHHHHHHHHHHHHHHc--CCCeEEEcCCHHHHHHHHHHHHHHHHh-cCC
Confidence 655 7888888777776 332 779999999999999998876654 889999999999999999988775554 499
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|+.++++.+.+. +..-.+||+++|...+ +.+-.+.. .....+.+.+.||||+|.+
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 9999999876543 3344789999999875 32222211 1223456889999999943
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=170.93 Aligned_cols=291 Identities=20% Similarity=0.257 Sum_probs=192.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch-hccCCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL-MALLSA 783 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~-~~~~~~ 783 (1492)
+-++-+|||.||||.-|+ +.+.. .++.+|.-|.|-||.++++++... |+.|..+||.-.... ..-..+
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~--aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS--AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh--hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCCCCcc
Confidence 446668999999998764 44433 577899999999999999987653 899999999633211 112357
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHH
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLA 862 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~ 862 (1492)
+.+=||.|+... -..+++.||||++++.+ .||..|...+--+. ...+++.|=-|.++=.+++.
T Consensus 261 ~hvScTVEM~sv----------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~~i~ 324 (700)
T KOG0953|consen 261 QHVSCTVEMVSV----------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVRKIL 324 (700)
T ss_pred cceEEEEEEeec----------CCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHHHHH
Confidence 888899885421 23678999999999965 78888776543332 12333333333332233343
Q ss_pred HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHh
Q 043190 863 DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAA 942 (1492)
Q Consensus 863 ~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~ 942 (1492)
+-.|-.-. + ..-.|-.|+.+ .......+....+ |.++| |-|++....+...+.+.
T Consensus 325 k~TGd~ve-v---~~YeRl~pL~v-----------------~~~~~~sl~nlk~-GDCvV-~FSkk~I~~~k~kIE~~-- 379 (700)
T KOG0953|consen 325 KMTGDDVE-V---REYERLSPLVV-----------------EETALGSLSNLKP-GDCVV-AFSKKDIFTVKKKIEKA-- 379 (700)
T ss_pred hhcCCeeE-E---EeecccCccee-----------------hhhhhhhhccCCC-CCeEE-EeehhhHHHHHHHHHHh--
Confidence 33322110 0 01111112111 0122233333333 34444 45777776666555322
Q ss_pred cCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEeccccccccCCCCc
Q 043190 943 SDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN--NKIQVLVCTSTLAWGVNLPAH 1020 (1492)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vLvaT~~l~~Gvdip~~ 1020 (1492)
.+..+++++|+|+++.|..--..|.+ ++.+|||||++.++|+|+.-.
T Consensus 380 -------------------------------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~Ir 428 (700)
T KOG0953|consen 380 -------------------------------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIR 428 (700)
T ss_pred -------------------------------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccccee
Confidence 24568999999999999999999987 899999999999999999999
Q ss_pred EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCcHHHHHHhhcC
Q 043190 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1021 ~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
++|+.....|++..- .+++..+..|.+|||||-|.. ..|.+..|.. ++.....+.++.
T Consensus 429 RiiF~sl~Kysg~e~--~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 429 RIIFYSLIKYSGRET--EDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-EDLKLLKRILKR 487 (700)
T ss_pred EEEEeecccCCcccc--eeccHHHHHHHhhcccccccCCcCceEEEeeH-hhHHHHHHHHhC
Confidence 999987777886543 788999999999999997643 4577666643 344555666653
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-15 Score=189.88 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=74.8
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcC---CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANN---KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g---~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~G 1050 (1492)
.+++...+||+++..+|..+++.|... ..-+|++|.+.+.|+|+...++||. || .++++....|++|
T Consensus 510 ~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD------~dWNP~~d~QAid 579 (1033)
T PLN03142 510 RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YD------SDWNPQVDLQAQD 579 (1033)
T ss_pred cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eC------CCCChHHHHHHHH
Confidence 467788999999999999999999753 3467899999999999999999997 55 3456889999999
Q ss_pred ccCCCCCCCceEEEEEecCCc
Q 043190 1051 RAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1051 RagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|+.|.|..+.-.+|.|+....
T Consensus 580 RaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 580 RAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HhhhcCCCceEEEEEEEeCCc
Confidence 999999877777888887764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=191.42 Aligned_cols=170 Identities=21% Similarity=0.311 Sum_probs=114.3
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeec--CCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFD--SSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
...++++||||. .++.++--+.... .+..++ +..| .|+...+.. .... +..++.+.+.+..++|
T Consensus 408 ~~~~iL~~SATp-~prtl~~~~~g~~--~~s~i~~~p~~r-~~i~~~~~~--~~~~--------~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 408 ENPHVLVMTATP-IPRTLAMTAYGDL--DVSVIDELPPGR-KPITTVVIP--DSRR--------DEVYERIREEIAKGRQ 473 (681)
T ss_pred CCCCEEEEeCCC-CHHHHHHHHcCCC--ceEEEecCCCCC-CCcEEEEeC--cccH--------HHHHHHHHHHHHcCCc
Confidence 458999999994 5555544332221 121221 1112 244433322 1111 1123445555678899
Q ss_pred EEEEEechHHHHH--------HHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh-cccEEEEcCCCCh
Q 043190 84 AMVFVHSRKDTVK--------TAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF-GLAVGVHHAGMLR 154 (1492)
Q Consensus 84 ~lVF~~sr~~~~~--------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~gv~~hhagl~~ 154 (1492)
++|||++.++.+. +++.|. +.+ ...++++||+|++
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~------------------------------------~~~~~~~v~~lHG~m~~ 517 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQ------------------------------------EAFPELRVGLLHGRMKP 517 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHH------------------------------------HHCCCCcEEEEeCCCCH
Confidence 9999997654432 222222 112 2459999999999
Q ss_pred hhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 155 SDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 155 ~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
++|..+++.|++|+++|||||+++++|||+|++++||. |+++. +....+.||+|||||.| ..|.|+++++.
T Consensus 518 ~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r--~gls~lhQ~~GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 518 AEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER--FGLAQLHQLRGRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred HHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC--CCHHHHHHHhhcccCCC--CceEEEEEECC
Confidence 99999999999999999999999999999999999985 66653 22344677999999998 67999999953
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-14 Score=176.72 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=100.5
Q ss_pred HHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 907 AYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 907 ~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
+...+.. ...+.++||||+|++.++.++..|.+. +..+.++||++
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----------------------------------gi~~~~lh~~~ 476 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----------------------------------GIKVRYLHSEI 476 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----------------------------------ccceeeeeCCC
Confidence 3344433 355778999999999999999877432 56788999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
+..+|..+++.|+.|++.|+|||+.+++|+|+|++.+||. ++..... .+-+..+|+||+|||||. ..|.+++
T Consensus 477 ~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~ 548 (655)
T TIGR00631 477 DTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIM 548 (655)
T ss_pred CHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEE
Confidence 9999999999999999999999999999999999998876 3322110 233578999999999996 4899999
Q ss_pred EecCCcHH
Q 043190 1066 LVHEPKKS 1073 (1492)
Q Consensus 1066 l~~~~~~~ 1073 (1492)
+++..+..
T Consensus 549 ~~~~~~~~ 556 (655)
T TIGR00631 549 YADKITDS 556 (655)
T ss_pred EEcCCCHH
Confidence 98876543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=189.90 Aligned_cols=123 Identities=24% Similarity=0.397 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHH----HHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh-ccc
Q 043190 70 CYKKVVDSLRQGHQAMVFVHSRKDTVKT----AQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF-GLA 144 (1492)
Q Consensus 70 ~~~~~~~~~~~~~~~lVF~~sr~~~~~~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g 144 (1492)
++..+.+.+..+++++|||++.++.+.+ |..+.+ .|.+.+ ...
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~--------------------------------~L~~~~~~~~ 484 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYE--------------------------------RLKKAFPKYN 484 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHH--------------------------------HHHhhCCCCc
Confidence 3455556667889999999987654432 111111 111111 346
Q ss_pred EEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCcc
Q 043190 145 VGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRS 224 (1492)
Q Consensus 145 v~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~ 224 (1492)
|++|||+|++++|..+++.|++|+++|||||+++++|||+|++++||. |+++. +....+.||+|||||.| ..
T Consensus 485 v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r--~gls~lhQ~~GRvGR~g--~~ 556 (630)
T TIGR00643 485 VGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER--FGLSQLHQLRGRVGRGD--HQ 556 (630)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc--CCHHHHHHHhhhcccCC--CC
Confidence 999999999999999999999999999999999999999999999885 66543 22345778999999998 67
Q ss_pred ceEEEEeC
Q 043190 225 GEGIIITS 232 (1492)
Q Consensus 225 G~~i~~~~ 232 (1492)
|.|++++.
T Consensus 557 g~~il~~~ 564 (630)
T TIGR00643 557 SYCLLVYK 564 (630)
T ss_pred cEEEEEEC
Confidence 99999984
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=199.16 Aligned_cols=174 Identities=18% Similarity=0.295 Sum_probs=119.7
Q ss_pred CCCcccEEEEcccC-CChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATL-PNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl-~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+.++|+++||||. |....++.....+ ..+.......| .++...+..+.. . .....+...+..++
T Consensus 745 l~~~~qvLl~SATpiprtl~l~~~gl~d--~~~I~~~p~~r-~~v~~~~~~~~~--~---------~~k~~il~el~r~g 810 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLNMAMSGMRD--LSIIATPPARR-LAVKTFVREYDS--L---------VVREAILREILRGG 810 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHhhCCC--cEEEecCCCCC-CCceEEEEecCc--H---------HHHHHHHHHHhcCC
Confidence 46789999999995 3333333322111 11211222222 344433322111 0 01123333445688
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|++||||+++.++.+++.|.+..+ ..+|+++||+|++++|..+++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeCCCCHHHHHHHHH
Confidence 999999999999999988875422 235899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
.|++|+++|||||+++++|||+|.+++||- .++.. +....|+||+||+||.| ..|.|++++...
T Consensus 856 ~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~--fglaq~~Qr~GRvGR~g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 856 DFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH--FGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 919 (1147)
T ss_pred HHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC--CCHHHHHHHhhccCCCC--CceEEEEEeCCC
Confidence 999999999999999999999999888873 22221 22234899999999998 789999998654
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=166.14 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=137.0
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc--ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY--RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
..|+..|.=+||||... .+|++..--.+ +-.+-+-..+. .|..|..+|+.+... .+...+-+++.. .
T Consensus 184 ~LPKQRRTGLFSATq~~~v~dL~raGLRN-pv~V~V~~k~~~~tPS~L~~~Y~v~~a~---eK~~~lv~~L~~------~ 253 (567)
T KOG0345|consen 184 FLPKQRRTGLFSATQTQEVEDLARAGLRN-PVRVSVKEKSKSATPSSLALEYLVCEAD---EKLSQLVHLLNN------N 253 (567)
T ss_pred hcccccccccccchhhHHHHHHHHhhccC-ceeeeecccccccCchhhcceeeEecHH---HHHHHHHHHHhc------c
Confidence 45778888999999865 56666554444 22222222222 455587777776542 222222222111 2
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
..+.+|||.+|...++.....+..... ...+-..||.|.+..|..
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~-----------------------------------~~~i~~iHGK~~q~~R~k 298 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLK-----------------------------------KREIFSIHGKMSQKARAK 298 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhC-----------------------------------CCcEEEecchhcchhHHH
Confidence 357899999999999988877765422 223667799999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|++-.-.||+||+++|||+|+|+++.||. |||+. ...+|.||+||+||.| ..|.||++..+. .+.|
T Consensus 299 ~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~---~~~~FvHR~GRTaR~g--r~G~Aivfl~p~-E~aY 368 (567)
T KOG0345|consen 299 VLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK---DPSSFVHRCGRTARAG--REGNAIVFLNPR-EEAY 368 (567)
T ss_pred HHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC---ChhHHHhhcchhhhcc--CccceEEEeccc-HHHH
Confidence 999999988899999999999999999999996 88765 5677999999999999 889999999884 4455
Q ss_pred HHHhcCC
Q 043190 240 LRLLTSQ 246 (1492)
Q Consensus 240 ~~~~~~~ 246 (1492)
..++...
T Consensus 369 veFl~i~ 375 (567)
T KOG0345|consen 369 VEFLRIK 375 (567)
T ss_pred HHHHHhc
Confidence 5555443
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=167.49 Aligned_cols=192 Identities=19% Similarity=0.238 Sum_probs=143.5
Q ss_pred CCCCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEee--cCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHH
Q 043190 1 VESTQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFF--DSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDS 77 (1492)
Q Consensus 1 ~~~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1492)
++..|.+.|.++||||-.+ ..|+|+.-..+ |.-+-+. ....-|..|.+.|+.++.... .. +++..+-.+
T Consensus 240 i~~lP~~RQTLLFSATqt~svkdLaRLsL~d-P~~vsvhe~a~~atP~~L~Q~y~~v~l~~K---i~----~L~sFI~sh 311 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVKDLARLSLKD-PVYVSVHENAVAATPSNLQQSYVIVPLEDK---ID----MLWSFIKSH 311 (758)
T ss_pred HHhCChhheeeeeecccchhHHHHHHhhcCC-CcEEEEeccccccChhhhhheEEEEehhhH---HH----HHHHHHHhc
Confidence 4677899999999999876 77888775444 3333222 223467779888888874322 11 112222222
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
.....|||+.|.+++..+.+.+++..+ +..+-..||+|++..|
T Consensus 312 --lk~K~iVF~SscKqvkf~~e~F~rlrp-----------------------------------g~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 312 --LKKKSIVFLSSCKQVKFLYEAFCRLRP-----------------------------------GIPLLALHGTMSQKKR 354 (758)
T ss_pred --cccceEEEEehhhHHHHHHHHHHhcCC-----------------------------------CCceeeeccchhHHHH
Confidence 246799999999999888877765421 1125567999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..|...|-...--||+||+++|||+|+|++++||. +|.+. ...+|+||+||+.|.+ ..|.++++..+.+.+
T Consensus 355 ~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe---dv~tYIHRvGRtAR~~--~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 355 IEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE---DVDTYIHRVGRTARYK--ERGESLLMLTPSEEE 425 (758)
T ss_pred HHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch---hHHHHHHHhhhhhccc--CCCceEEEEcchhHH
Confidence 99999999999999999999999999999999996 66443 5567999999999976 889999999998877
Q ss_pred HHHHHhcCC
Q 043190 238 YYLRLLTSQ 246 (1492)
Q Consensus 238 ~~~~~~~~~ 246 (1492)
.+...+...
T Consensus 426 ~~l~~Lq~k 434 (758)
T KOG0343|consen 426 AMLKKLQKK 434 (758)
T ss_pred HHHHHHHHc
Confidence 766655554
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=175.98 Aligned_cols=110 Identities=22% Similarity=0.188 Sum_probs=89.4
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
+..+.|+||||+|+..++.++..|... +.....+|+ .+.+|+..
T Consensus 595 ~~~grpVLIft~Sve~sE~Ls~~L~~~----------------------------------gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 595 QKKGQPVLVGTASVEVSETLSRMLRAK----------------------------------RIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hhCCCCEEEEeCcHHHHHHHHHHHHHc----------------------------------CCCceeecC--CHHHhHHH
Confidence 456889999999999999998877542 455678887 57899999
Q ss_pred HHHHhcCCceEEEeccccccccCCC---CcE-----EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLP---AHL-----VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip---~~~-----~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
+..|+.+...|+|||++++||+||+ .+. +||. +. .+-+...|.|+.|||||.| .+|.++.
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg-te---------rhes~Rid~Ql~GRtGRqG--dpGsS~f 706 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG-SE---------RHESRRIDRQLRGRAGRQG--DPGESVF 706 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC-CC---------CCchHHHHHHHhhhhhcCC--CCcceEE
Confidence 9999999999999999999999999 442 3343 21 2224667999999999988 9999999
Q ss_pred EecCCc
Q 043190 1066 LVHEPK 1071 (1492)
Q Consensus 1066 l~~~~~ 1071 (1492)
+++..+
T Consensus 707 fvSleD 712 (1025)
T PRK12900 707 YVSLED 712 (1025)
T ss_pred EechhH
Confidence 988765
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=177.33 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=90.6
Q ss_pred HHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCCh
Q 043190 75 VDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLR 154 (1492)
Q Consensus 75 ~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~ 154 (1492)
.+....++++||||+|+++|+.+++.|.+... ...+..+||+|++
T Consensus 216 ~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~-----------------------------------~~~~~~~h~~~~~ 260 (358)
T TIGR01587 216 LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP-----------------------------------EEEIMLLHSRFTE 260 (358)
T ss_pred HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-----------------------------------CCeEEEEECCCCH
Confidence 34446688999999999999999998876421 1138899999999
Q ss_pred hhHHHH----HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCc--cceEE
Q 043190 155 SDRGLT----ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDR--SGEGI 228 (1492)
Q Consensus 155 ~~R~~v----e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~--~G~~i 228 (1492)
.+|..+ .+.|++|..+|||||+++++|||+|...||. +.. ...+|+||+||+||.|... .|.++
T Consensus 261 ~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-----~~~-----~~~~~iqr~GR~gR~g~~~~~~~~~~ 330 (358)
T TIGR01587 261 KDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMIT-----ELA-----PIDSLIQRLGRLHRYGRKNGENFEVY 330 (358)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEE-----cCC-----CHHHHHHHhccccCCCCCCCCCCeEE
Confidence 999775 7889999999999999999999998655544 222 1236999999999998542 35888
Q ss_pred EEeCCcc
Q 043190 229 IITSHDK 235 (1492)
Q Consensus 229 ~~~~~~~ 235 (1492)
++....+
T Consensus 331 v~~~~~~ 337 (358)
T TIGR01587 331 IITIAPE 337 (358)
T ss_pred EEeecCC
Confidence 8876543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=175.73 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|...--.+. . --|..+.||+|||+++.+|++..... |..+-+++|+--||.+-++.+...+.. +|+
T Consensus 80 Gm~-~ydVQliGg~~Lh-~--G~iaEM~TGEGKTLvA~l~a~l~al~--G~~VhvvT~ndyLA~RD~e~m~~l~~~-lGl 152 (913)
T PRK13103 80 GMR-HFDVQLIGGMTLH-E--GKIAEMRTGEGKTLVGTLAVYLNALS--GKGVHVVTVNDYLARRDANWMRPLYEF-LGL 152 (913)
T ss_pred CCC-cchhHHHhhhHhc-c--CccccccCCCCChHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHhcc-cCC
Confidence 543 6677765444443 3 34789999999999999998866554 889999999999999999988876555 499
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++++++..... +..-.++|+++|..-+ +.|-.+.. .....+.+.++||||+|.+
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 9999999876543 3344699999999874 33322211 1223478899999999954
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=161.72 Aligned_cols=181 Identities=26% Similarity=0.389 Sum_probs=130.5
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..++++|++.+|||.|. ..++++-+..+ |..+.+-..+..---+.+.|+.+.... +... +.+....-
T Consensus 196 ~lp~~vQv~l~SAT~p~~vl~vt~~f~~~-pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~--------l~dl~~~~ 263 (397)
T KOG0327|consen 196 ELPSDVQVVLLSATMPSDVLEVTKKFMRE-PVRILVKKDELTLEGIKQFYINVEKEE---KLDT--------LCDLYRRV 263 (397)
T ss_pred HcCcchhheeecccCcHHHHHHHHHhccC-ceEEEecchhhhhhheeeeeeeccccc---cccH--------HHHHHHhh
Confidence 46788999999999997 77777777655 222221111111111222333332221 2111 11222355
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|++||||||+.+..+..+|... ...+...||.|.+.+|..+.
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~-------------------------------------~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAH-------------------------------------GFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhC-------------------------------------CceEEEeecccchhhhhHHH
Confidence 78999999999998888777432 23377889999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
..|+.|..+||++|+.+|+|+|+-....||+ |+.+. ...+|+||+||+||.| .+|.++.++...+...+.+
T Consensus 307 ~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~---~~~~yihR~gr~gr~g--rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 307 REFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA---RKENYIHRIGRAGRFG--RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred HHhhcCCceEEeeccccccccchhhcceeee----ecccc---chhhhhhhcccccccC--CCceeeeeehHhhHHHHHh
Confidence 9999999999999999999999999999997 66443 4556999999999999 8899999998877655543
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-15 Score=168.95 Aligned_cols=182 Identities=21% Similarity=0.266 Sum_probs=130.0
Q ss_pred CCCCCcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCC-chhHHHHHhhHHHHHHHHHHH
Q 043190 2 ESTQRMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEP-NFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
++.|...|++++|||-|. .+-+++|++.. .-+.+-..+.--.-+.++++..+.. +..+.+.... +++-+.+
T Consensus 194 ~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp--~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl----q~L~~vf 267 (980)
T KOG4284|consen 194 NSLPQIRQVAAFSATYPRNLDNLLSKFMRDP--ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL----QKLTHVF 267 (980)
T ss_pred HhcchhheeeEEeccCchhHHHHHHHHhccc--ceeecccCCceeechhheeeeccCCcchHHHHHHHH----HHHHHHH
Confidence 567888999999999995 44477777643 2111112222233455555555433 2222222221 1222222
Q ss_pred h--cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhh
Q 043190 79 R--QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSD 156 (1492)
Q Consensus 79 ~--~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~ 156 (1492)
+ +-.|+||||+....|+-+|..|...+ ..+.+..|.|++.+
T Consensus 268 ~~ipy~QAlVF~~~~sra~~~a~~L~ssG-------------------------------------~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 268 KSIPYVQALVFCDQISRAEPIATHLKSSG-------------------------------------LDVTFISGAMSQKD 310 (980)
T ss_pred hhCchHHHHhhhhhhhhhhHHHHHhhccC-------------------------------------CCeEEeccccchhH
Confidence 2 34689999999999999988886431 12667789999999
Q ss_pred HHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 157 RGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 157 R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|..+.+.+|.-..+|||+|+..|||||-|.+++||+ -|+.. ...+|+||+|||||.| ..|.+|.++...+
T Consensus 311 Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~p~---d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 311 RLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----IDAPA---DEETYFHRIGRAGRFG--AHGAAVTLLEDER 380 (980)
T ss_pred HHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cCCCc---chHHHHHHhhhccccc--ccceeEEEeccch
Confidence 999999999999999999999999999999999997 45432 5567999999999999 8899998876554
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-14 Score=155.01 Aligned_cols=168 Identities=26% Similarity=0.313 Sum_probs=123.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
++..++++|.+++..+.+..+++++++|||+|||.++..+++..+...+..+++|++|+++++.|..+.+...+....+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLK 84 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeE
Confidence 56779999999999998333899999999999999999999998877556899999999999999998887765443113
Q ss_pred EEEEEcCCCCcc-h-hccCCC-cEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhh
Q 043190 765 EMVEMTGDYTPD-L-MALLSA-DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 765 ~v~~~~g~~~~~-~-~~~~~~-~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~ 840 (1492)
....+.+..... . ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~----- 157 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL----- 157 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-----
Confidence 444454433211 1 112233 999999999877777633 3466889999999998865 4444444444332
Q ss_pred ccCCceEEEEEcCCCCChHHH
Q 043190 841 QTERAVRFIGLSTALANAGDL 861 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~ 861 (1492)
....+++++|||+++..+.
T Consensus 158 --~~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 158 --PKNVQLLLLSATPPEEIEN 176 (201)
T ss_pred --CccceEEEEecCCchhHHH
Confidence 4578999999999764333
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-13 Score=153.87 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=99.3
Q ss_pred HHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 907 AYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 907 ~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
++..+.. ...+.++||-+-|++.|+.+..+|.+ .+.++.++|++.
T Consensus 435 L~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e----------------------------------~gikv~YlHSdi 480 (663)
T COG0556 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE----------------------------------LGIKVRYLHSDI 480 (663)
T ss_pred HHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh----------------------------------cCceEEeeeccc
Confidence 3444433 45678999999999999999888844 378899999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
..-+|..+++.++.|..+|||.-+.+-+|+|+|.|.+|.. .|....+ +--|-.+++|-+|||.|. ..|.+++
T Consensus 481 dTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeG-FLRse~SLIQtIGRAARN---~~GkvIl 552 (663)
T COG0556 481 DTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIL 552 (663)
T ss_pred hHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE----eecCccc-cccccchHHHHHHHHhhc---cCCeEEE
Confidence 9999999999999999999999999999999999998764 4443222 333677999999999995 5899887
Q ss_pred EecCC
Q 043190 1066 LVHEP 1070 (1492)
Q Consensus 1066 l~~~~ 1070 (1492)
+.+.-
T Consensus 553 YAD~i 557 (663)
T COG0556 553 YADKI 557 (663)
T ss_pred Echhh
Confidence 76543
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-13 Score=170.15 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=96.4
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.+++|||+|++.++.++..|.+ .+..+..+||+++..+|..++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~----------------------------------~gi~~~~~h~~~~~~~R~~~l 489 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKE----------------------------------LGIKVRYLHSDIDTLERVEII 489 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhh----------------------------------cceeEEEEECCCCHHHHHHHH
Confidence 4577899999999999999987743 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|+.|.+.|+|||+.+++|+|+|++.+||. ++..... ++-+..+|+||+||+||. ..|.|+.+++..+
T Consensus 490 ~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~~ 558 (652)
T PRK05298 490 RDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKIT 558 (652)
T ss_pred HHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCCC
Confidence 9999999999999999999999999998886 3332111 223678999999999994 5899999998544
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=145.50 Aligned_cols=297 Identities=18% Similarity=0.227 Sum_probs=182.8
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHH--HhcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDS--LRQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 82 (1492)
.+++++|.||||+ .+..+..|++..+ + ..... ..|.+..|....++++... ....+++. -...+
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~P---l--l~vpg-~~PvEi~Yt~e~erDylEa-------airtV~qih~~ee~G 254 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNAP---L--LAVPG-THPVEIFYTPEPERDYLEA-------AIRTVLQIHMCEEPG 254 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCCC---e--eecCC-CCceEEEecCCCChhHHHH-------HHHHHHHHHhccCCC
Confidence 3589999999998 8889999998763 2 22232 4556555544333332211 11122221 14578
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|||..+..+.+..++.+......-+. ++..-.|-..| |.++..+.+
T Consensus 255 DilvFLtgeeeIe~aC~~i~re~~~L~~----------------------------~~g~l~v~PLy----P~~qq~iFe 302 (699)
T KOG0925|consen 255 DILVFLTGEEEIEDACRKISREVDNLGP----------------------------QVGPLKVVPLY----PAQQQRIFE 302 (699)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHhhcc----------------------------ccCCceEEecC----chhhccccC
Confidence 8999999999999999998755432110 00011133444 444444433
Q ss_pred HHhC---C--CccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccce
Q 043190 163 LFSE---G--LLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 163 ~f~~---g--~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
.... | ..||+|+|+.++..+.++.+..||.- .++|+|+.+ +.+..+..||+|||||. +.|.
T Consensus 303 p~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGk 379 (699)
T KOG0925|consen 303 PAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGK 379 (699)
T ss_pred CCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCc
Confidence 3221 2 36899999999999999999999972 467988664 34555677799999997 5899
Q ss_pred EEEEeCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCC
Q 043190 227 GIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIAD 306 (1492)
Q Consensus 227 ~i~~~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~ 306 (1492)
|+.+++.+ .+.+-+..+.+ ..-+.++|...++..-.+|. .++-++ ++++.
T Consensus 380 cfrLYte~---~~~~em~~~ty-peilrsNL~s~VL~LKklgI---------------------~dlvhf-----dfmDp 429 (699)
T KOG0925|consen 380 CFRLYTEE---AFEKEMQPQTY-PEILRSNLSSTVLQLKKLGI---------------------DDLVHF-----DFMDP 429 (699)
T ss_pred eEEeecHH---hhhhcCCCCCc-HHHHHHhhHHHHHHHHhcCc---------------------ccccCC-----cCCCC
Confidence 99999743 33322222222 22233344444443322221 122111 23333
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCC
Q 043190 307 PSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFEN 386 (1492)
Q Consensus 307 ~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~ 386 (1492)
|+ -+.+.+||+.|...++++.| | .+|++|.+||.|+++|+.+++++.+-... +..++|.+-++-+ -.+
T Consensus 430 PA-----PEtLMrALE~LnYLaaLdDd---G--nLT~lG~imSEFPLdPqLAkmLi~S~efn-CsnEiLsisAMLs-vPn 497 (699)
T KOG0925|consen 430 PA-----PETLMRALEVLNYLAALDDD---G--NLTSLGEIMSEFPLDPQLAKMLIGSCEFN-CSNEILSISAMLS-VPN 497 (699)
T ss_pred CC-----hHHHHHHHHHhhhhhhhCCC---c--ccchhhhhhhcCCCChHHHHHHhhcCCCC-chHHHHHHHhccc-CCc
Confidence 33 35667899999999998633 3 59999999999999999999999854433 4556666655533 233
Q ss_pred Cccchh
Q 043190 387 IVVRDE 392 (1492)
Q Consensus 387 i~~R~~ 392 (1492)
-.+|+.
T Consensus 498 cFvRp~ 503 (699)
T KOG0925|consen 498 CFVRPT 503 (699)
T ss_pred cccCCC
Confidence 344543
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-15 Score=168.64 Aligned_cols=178 Identities=24% Similarity=0.313 Sum_probs=123.5
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCccc---ccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc-
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRP---IPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ- 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rp---v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (1492)
.+++++-+||||++. .+.+|...... ++..+-...|+ ..+.+..+++.... .-+-.+.+.+..
T Consensus 319 s~~i~~a~FSat~~~--~VEE~~~~i~~-~~~~vivg~~~sa~~~V~QelvF~gse~----------~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 319 SPDIRVALFSATISV--YVEEWAELIKS-DLKRVIVGLRNSANETVDQELVFCGSEK----------GKLLALRQLVASG 385 (593)
T ss_pred CcchhhhhhhccccH--HHHHHHHHhhc-cceeEEEecchhHhhhhhhhheeeecch----------hHHHHHHHHHhcc
Confidence 367889999999875 55666654311 11111111221 11222222222110 001122333333
Q ss_pred -CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 81 -GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 81 -~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
..|+|||+.|...|..+...|-. .+ .-.|++.||+.++.+|..
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~----~~--------------------------------~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEI----YD--------------------------------NINVDVIHGERSQKQRDE 429 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhh----cc--------------------------------CcceeeEecccchhHHHH
Confidence 46899999998888777665520 00 113899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
..+.||.|++.||+||+.++||+|+-+++.||+ ||-+. +..+|+||+||+||+| ++|.||.+++.++..+.
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~---s~~syihrIGRtgRag--~~g~Aitfytd~d~~~i 500 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ---SDLSYIHRIGRTGRAG--RSGKAITFYTDQDMPRI 500 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc---hhHHHHHHhhccCCCC--CCcceEEEeccccchhh
Confidence 999999999999999999999999999999997 77544 7788999999999999 89999999998776654
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 501 r 501 (593)
T KOG0344|consen 501 R 501 (593)
T ss_pred h
Confidence 4
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=163.11 Aligned_cols=175 Identities=22% Similarity=0.292 Sum_probs=120.7
Q ss_pred CCcccEEEEcccCCC-hHH-HHHhcCCCCCCceEe-ec-CCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh-
Q 043190 5 QRMIRIVGLSATLPN-YLE-VAQFLRVNPEMGLFF-FD-SSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR- 79 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~-~a~~l~~~~~~~~~~-~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (1492)
....|-++||||.|. ... .+.|+..+ .+++ ++ ...-+..+.+.+..+.+..... .+++ + +.....
T Consensus 260 ~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V~~~~kr~--~Lld-l----l~~~~~~ 329 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFVNEMEKRS--KLLD-L----LNKDDGP 329 (482)
T ss_pred ccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeeecchhhHH--HHHH-H----hhcccCC
Confidence 347899999999996 333 33444321 1211 11 1122334556666665432211 1111 1 110000
Q ss_pred -cC-----CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCC
Q 043190 80 -QG-----HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGML 153 (1492)
Q Consensus 80 -~~-----~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~ 153 (1492)
.. ..++|||.|++.+..++..|.... +..--.|+.-+
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-------------------------------------~~~~sIhg~~t 372 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNG-------------------------------------YPAKSIHGDRT 372 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCC-------------------------------------CCceeecchhh
Confidence 11 269999999999999998886532 12445689999
Q ss_pred hhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 154 RSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 154 ~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
+.+|....+.|++|.+.|||||+++|||+|+|.++.||+ ||-+. .-.+|+||+||+||.| ..|.++.+++.
T Consensus 373 q~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~---d~d~YvHRIGRTGR~G--n~G~atsf~n~ 443 (482)
T KOG0335|consen 373 QIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA---DIDDYVHRIGRTGRVG--NGGRATSFFNE 443 (482)
T ss_pred hhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc---chhhHHHhccccccCC--CCceeEEEecc
Confidence 999999999999999999999999999999999999997 66433 3456999999999999 88999999984
Q ss_pred cc
Q 043190 234 DK 235 (1492)
Q Consensus 234 ~~ 235 (1492)
.+
T Consensus 444 ~~ 445 (482)
T KOG0335|consen 444 KN 445 (482)
T ss_pred cc
Confidence 43
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=177.10 Aligned_cols=285 Identities=16% Similarity=0.148 Sum_probs=190.6
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEE-------ee-CC--ch---hHH------HHH
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIG-------IS-EP--NF---AAR------NEL 65 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~-------~~-~~--~~---~~~------~~~ 65 (1492)
.+++++|+||||+ |++.|.+|++..+ ++....|..|+..+|.- +. .. .. ... ...
T Consensus 317 ~p~LkvILMSAT~-dae~fs~YF~~~p-----vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (924)
T KOG0920|consen 317 NPDLKVILMSATL-DAELFSDYFGGCP-----VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKL 390 (924)
T ss_pred CCCceEEEeeeec-chHHHHHHhCCCc-----eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchh
Confidence 4789999999998 8999999999654 46667888888776531 11 00 00 000 000
Q ss_pred -hhHHHHHH---HHHHH---hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHH
Q 043190 66 -LSEICYKK---VVDSL---RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLI 138 (1492)
Q Consensus 66 -~~~~~~~~---~~~~~---~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (1492)
..++-++. +.+++ ...+.+|||.++-.++..+...|.......+.
T Consensus 391 ~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------------------------- 442 (924)
T KOG0920|consen 391 WEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------------------------- 442 (924)
T ss_pred ccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------
Confidence 01111222 22222 23578999999999998888877543221110
Q ss_pred HHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCCC-------cccC
Q 043190 139 ELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAGG-------WRDL 207 (1492)
Q Consensus 139 ~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~~-------~~~~ 207 (1492)
.+.-+-..|+.|+.++++.|.+.-..|..|||+||+.++.+|.+|++..||.. -+.||+.... .+..
T Consensus 443 --~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkA 520 (924)
T KOG0920|consen 443 --LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKA 520 (924)
T ss_pred --cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecccc
Confidence 01225567999999999999999999999999999999999999999999984 3458886542 1234
Q ss_pred chhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhh
Q 043190 208 GMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSI 287 (1492)
Q Consensus 208 ~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~ 287 (1492)
...||.|||||.. .|.||-+++.. .|.+++. +.++.+.+...|.+..+..-.++ ..+..++|..
T Consensus 521 na~QR~GRAGRv~---~G~cy~L~~~~---~~~~~~~-~~q~PEilR~pL~~l~L~iK~l~----~~~~~~fLsk----- 584 (924)
T KOG0920|consen 521 NAKQRRGRAGRVR---PGICYHLYTRS---RYEKLML-AYQLPEILRTPLEELCLHIKVLE----QGSIKAFLSK----- 584 (924)
T ss_pred chHHhcccccCcc---CCeeEEeechh---hhhhccc-ccCChHHHhChHHHhhheeeecc----CCCHHHHHHH-----
Confidence 4678999999984 79999999754 3443322 23344444444544433322222 1112233222
Q ss_pred hhccCccccCCCcccccCCchHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhh
Q 043190 288 RMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLR 366 (1492)
Q Consensus 288 r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~ 366 (1492)
+...| . .+.+..|+..|.+.|+++.++ .+|++|+.+|++++++.-.+++....-
T Consensus 585 -aldpP--------------~-----~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~i 638 (924)
T KOG0920|consen 585 -ALDPP--------------P-----ADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAI 638 (924)
T ss_pred -hcCCC--------------C-----hHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhh
Confidence 22222 1 367889999999999998553 799999999999999998888776543
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=171.90 Aligned_cols=136 Identities=19% Similarity=0.318 Sum_probs=91.5
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++|||++|.+..+.++..|..... ..+...+.-+++...|..+.+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~--------------------------------~~~~~ll~Qg~~~~~r~~l~~ 798 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE--------------------------------LEGYVLLAQGVSSGSRARLTK 798 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc--------------------------------ccCceEEecCCCCCCHHHHHH
Confidence 467899999999999988877743211 011222233555566889999
Q ss_pred HHhcCCceEEEeccccccccCCCCc--E-EEEecceeeeCc---------------cCccccC--C--HHHHHHhhcccC
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAH--L-VIIKGTEYYDGK---------------TKRYVDF--P--ITDILQMMGRAG 1053 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~--~-~VI~~~~~~~~~---------------~~~~~~~--~--~~~~~Qr~GRag 1053 (1492)
.|+.++-.||++|..+.+|||+|+. . +||-+-++-.|. ...++++ | +..+.|-+||.-
T Consensus 799 ~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlI 878 (928)
T PRK08074 799 QFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLI 878 (928)
T ss_pred HHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhc
Confidence 9999988999999999999999974 3 445443332221 1123443 3 557899999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhhcCCCc
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l~~~~p 1084 (1492)
|.. ++.|.++++-.+-....|.+.+-..+|
T Consensus 879 Rs~-~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 879 RTE-TDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ccC-CceEEEEEecCccccchHHHHHHHhCC
Confidence 975 457877777555455556666655555
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-14 Score=154.44 Aligned_cols=183 Identities=20% Similarity=0.240 Sum_probs=121.9
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
.++.|.|+-|||-|. ...+|.-...+ +--+++-.-+.-.+.--...+.+... ..+...++.+ .+.......
T Consensus 396 RPDRqtvmTSATWP~~VrrLa~sY~Ke-p~~v~vGsLdL~a~~sVkQ~i~v~~d--~~k~~~~~~f-----~~~ms~ndK 467 (629)
T KOG0336|consen 396 RPDRQTVMTSATWPEGVRRLAQSYLKE-PMIVYVGSLDLVAVKSVKQNIIVTTD--SEKLEIVQFF-----VANMSSNDK 467 (629)
T ss_pred CCcceeeeecccCchHHHHHHHHhhhC-ceEEEecccceeeeeeeeeeEEeccc--HHHHHHHHHH-----HHhcCCCce
Confidence 468899999999997 66777655444 22222211122222211222222211 1222222221 122245678
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||..+-.+..+...+.-.. ...-..||+-++.+|+...+.
T Consensus 468 vIiFv~~K~~AD~LSSd~~l~g-------------------------------------i~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 468 VIIFVSRKVMADHLSSDFCLKG-------------------------------------ISSQSLHGNREQSDREMALED 510 (629)
T ss_pred EEEEEechhhhhhccchhhhcc-------------------------------------cchhhccCChhhhhHHHHHHh
Confidence 9999998886655544332110 012345999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
|++|.++|||||+.++||+|+|+++.|++ ||- +.....|.||+||+||+| +.|.++.+...++......
T Consensus 511 ~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDF---P~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 511 FKSGEVRILVATDLASRGLDVPDITHVYN----YDF---PRNIEEYVHRVGRTGRAG--RTGTSISFLTRNDWSMAEE 579 (629)
T ss_pred hhcCceEEEEEechhhcCCCchhcceeec----cCC---CccHHHHHHHhcccccCC--CCcceEEEEehhhHHHHHH
Confidence 99999999999999999999999999998 553 224456999999999999 7899999988777655443
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=156.22 Aligned_cols=333 Identities=17% Similarity=0.226 Sum_probs=187.4
Q ss_pred CCCCCCHHHHHHHHhhhcCC--CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 685 NFSHFNPIQTQIFHILYHTD--NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~--~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
+-..++|+|..++..++.+| +..+|..|.|+|||++..-++... .+++|+++.+-.-+.|..++|.. +...-
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~-wsti~ 372 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQ-WSTIQ 372 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHh-hcccC
Confidence 34568999999999999655 478999999999999877655443 67899999988777775555543 23222
Q ss_pred CCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccC-c-----cccCcccEEEEecccccCCCCccHHHHHHHHHH
Q 043190 763 GKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHS-R-----NYVKKVGLMILDEIHLLGAERGPILEVIVSRMR 836 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~-~-----~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~ 836 (1492)
...++..|+|... ....++.|+|+|+.++..--++... . ..-...+++++||+|.+... .+..+++.+.
T Consensus 373 d~~i~rFTsd~Ke--~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~---MFRRVlsiv~ 447 (776)
T KOG1123|consen 373 DDQICRFTSDAKE--RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK---MFRRVLSIVQ 447 (776)
T ss_pred ccceEEeeccccc--cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH---HHHHHHHHHH
Confidence 4456667766432 2335789999999766332222111 0 11246799999999976321 2223333332
Q ss_pred HhhhccCCceEEEEEcCCCCChHHH--------------HHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccc
Q 043190 837 YISSQTERAVRFIGLSTALANAGDL--------------ADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNS 902 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~~~~~--------------~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 902 (1492)
.- . -+|++||+-..+|- ++|+.....+.+. .+...... -.
T Consensus 448 aH-------c-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA------~VqCaEVW------------Cp 501 (776)
T KOG1123|consen 448 AH-------C-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA------KVQCAEVW------------CP 501 (776)
T ss_pred HH-------h-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee------EEeeeeee------------cC
Confidence 21 1 28999998553331 2333322211100 00000000 11
Q ss_pred cChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
|...-|.........++.|.++-.... .+.++.|+++....+....+...+.-.+..+ .+..+--+++
T Consensus 502 Mt~eFy~eYL~~~t~kr~lLyvMNP~K-FraCqfLI~~HE~RgDKiIVFsDnvfALk~Y-----------Aikl~KpfIY 569 (776)
T KOG1123|consen 502 MTPEFYREYLRENTRKRMLLYVMNPNK-FRACQFLIKFHERRGDKIIVFSDNVFALKEY-----------AIKLGKPFIY 569 (776)
T ss_pred CCHHHHHHHHhhhhhhhheeeecCcch-hHHHHHHHHHHHhcCCeEEEEeccHHHHHHH-----------HHHcCCceEE
Confidence 111112221111222223333221111 1122223333222222111111111111111 1234556889
Q ss_pred CCCCHHHHHHHHHHHhc-CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC---
Q 043190 983 AGLNDKDRSLVEELFAN-NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD--- 1058 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~-g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~--- 1058 (1492)
|..++.+|..|++.|+- ..++-++-+-+...++|+|..+++|.-...|. |..+-.||.||.-|+...
T Consensus 570 G~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRILRAKk~~de 640 (776)
T KOG1123|consen 570 GPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRILRAKKRNDE 640 (776)
T ss_pred CCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999985 46889999999999999999999997444333 455678999998886421
Q ss_pred -CceEEEEEecCCcHHHH
Q 043190 1059 -QHGKAVILVHEPKKSFY 1075 (1492)
Q Consensus 1059 -~~G~~i~l~~~~~~~~~ 1075 (1492)
-....|.+++.+..++|
T Consensus 641 ~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 641 EFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccceeeeeeeecchHHHH
Confidence 12445666666655543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-13 Score=160.12 Aligned_cols=280 Identities=20% Similarity=0.151 Sum_probs=171.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+ .|+..|+--...++ .|+++-+.||||.|||+-.++..+-... .+++++||+||..|+.|.++++.+......+.
T Consensus 80 G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 77 69999998888888 8999999999999999876554443332 37999999999999999999998744333113
Q ss_pred EEEE-EcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC---------c-
Q 043190 765 EMVE-MTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER---------G- 825 (1492)
Q Consensus 765 ~v~~-~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~---------g- 825 (1492)
.+.. ++|......+ ...+.||+|+|..-+..-... ..--++++|++|++|.+.. .+ |
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~----L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf 231 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE----LSKLKFDFIFVDDVDAILKASKNVDRLLRLLGF 231 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH----hcccCCCEEEEccHHHHHhccccHHHHHHHcCC
Confidence 3322 7777554331 123589999998633222211 1112689999999995421 11 0
Q ss_pred ------cHHHHHHHHH-----------HHhh--------hccCCceEEEEEcCCCCCh----HHHHHHhcCCcceeEecC
Q 043190 826 ------PILEVIVSRM-----------RYIS--------SQTERAVRFIGLSTALANA----GDLADWLGVGEIGLFNFK 876 (1492)
Q Consensus 826 ------~~~~~i~~~l-----------~~~~--------~~~~~~~~ii~lSATl~~~----~~~~~~l~~~~~~~~~~~ 876 (1492)
..++.+.-+. +... ....+..++|..|||.... .-+.+.+|....
T Consensus 232 ~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG------ 305 (1187)
T COG1110 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVG------ 305 (1187)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccC------
Confidence 0111111111 1000 0122457899999997542 334455554332
Q ss_pred CCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecC---hHHHHHHHHHHHHHHhcCCCCcccCCC
Q 043190 877 PSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSS---RRQTRLTALDLIQFAASDETPRQFLGM 953 (1492)
Q Consensus 877 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s---~~~~~~~a~~L~~~~~~~~~~~~~~~~ 953 (1492)
....-+...+..+... .........+... +...|||++. +..++.++..|..
T Consensus 306 --~~~~~LRNIvD~y~~~-------~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~-------------- 360 (1187)
T COG1110 306 --SGGEGLRNIVDIYVES-------ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRS-------------- 360 (1187)
T ss_pred --ccchhhhheeeeeccC-------ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHh--------------
Confidence 1111111111111111 1112233344444 3468999999 6677777766633
Q ss_pred ChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecc----ccccccCCCC-cEEEE-ecc
Q 043190 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS----TLAWGVNLPA-HLVII-KGT 1027 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~----~l~~Gvdip~-~~~VI-~~~ 1027 (1492)
.++.+..+|++ +...++.|..|++++||+.. ++.||+|+|. ++++| -|.
T Consensus 361 --------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~Gv 415 (1187)
T COG1110 361 --------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGV 415 (1187)
T ss_pred --------------------cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecC
Confidence 36778888874 26789999999999999764 7899999996 45544 454
Q ss_pred e
Q 043190 1028 E 1028 (1492)
Q Consensus 1028 ~ 1028 (1492)
+
T Consensus 416 P 416 (1187)
T COG1110 416 P 416 (1187)
T ss_pred C
Confidence 4
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-14 Score=156.31 Aligned_cols=140 Identities=21% Similarity=0.314 Sum_probs=105.2
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHH-hcccEEEEcCCCChhhHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIEL-FGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~gv~~hhagl~~~~R~~ 159 (1492)
...++||+.+...++.-...+.........-.. ....++.+..+ .+..+--.||+|++++|..
T Consensus 425 ~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s----------------~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 425 KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSS----------------GAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred hceeEEEEechhHHHHHHHHHHhhhhccccccc----------------CCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 447999999999998877777665443110000 00001111222 2233666799999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|+...--||.||+++|||+|+|.+..||. ||++ .+..+|+||+||+.|.| ..|.++++..+.+.+ |
T Consensus 489 ~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~P---~s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y 558 (708)
T KOG0348|consen 489 VFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDPP---FSTADYLHRVGRTARAG--EKGEALLFLLPSEAE-Y 558 (708)
T ss_pred HHHhhccccceEEEehhhhhccCCCCCcCeEEE----eCCC---CCHHHHHHHhhhhhhcc--CCCceEEEecccHHH-H
Confidence 999999999999999999999999999999996 7764 37778999999999999 789999999988877 6
Q ss_pred HHHhcCC
Q 043190 240 LRLLTSQ 246 (1492)
Q Consensus 240 ~~~~~~~ 246 (1492)
.+.+...
T Consensus 559 ~~~l~~~ 565 (708)
T KOG0348|consen 559 VNYLKKH 565 (708)
T ss_pred HHHHHhh
Confidence 6555443
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=163.03 Aligned_cols=420 Identities=16% Similarity=0.165 Sum_probs=248.3
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCC
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGD 772 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~ 772 (1492)
.+..+ ..++.++|-+.||+|||+.+...||+.+.++. ...+.+..|+|-.+..+++++.+.-+...|-.|+.-..-
T Consensus 386 i~q~v-~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921|consen 386 ILQAV-AENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHH-hcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc
Confidence 44444 36788999999999999999999999887653 246788999999888888888776555544444321110
Q ss_pred CCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 773 ~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
...-......|.+||-|-+...... -+..+.++|+||+|+..- .+..+..++.-|+. +.+..++++||
T Consensus 465 --~Sa~prpyg~i~fctvgvllr~~e~-----glrg~sh~i~deiherdv-~~dfll~~lr~m~~----ty~dl~v~lms 532 (1282)
T KOG0921|consen 465 --DSATPRPYGSIMFCTVGVLLRMMEN-----GLRGISHVIIDEIHERDV-DTDFVLIVLREMIS----TYRDLRVVLMS 532 (1282)
T ss_pred --cccccccccceeeeccchhhhhhhh-----cccccccccchhhhhhcc-chHHHHHHHHhhhc----cchhhhhhhhh
Confidence 0111123457999999966544443 266889999999996532 23334444444432 34578899999
Q ss_pred CCCCChHHHHHHhcCCcceeEe-------------------cCCCccccCcEEEE-ecc---------------CCcccc
Q 043190 853 TALANAGDLADWLGVGEIGLFN-------------------FKPSVRPVPLEVHI-QGY---------------PGKFYC 897 (1492)
Q Consensus 853 ATl~~~~~~~~~l~~~~~~~~~-------------------~~~~~r~~~l~~~~-~~~---------------~~~~~~ 897 (1492)
||+ |.+.+..+|+.-+..... +.+. ++.+..... ... .+..++
T Consensus 533 atI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 533 ATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred ccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhhc
Confidence 998 556666666543321100 0000 000000000 000 000000
Q ss_pred ccc-ccc--------ChhHHHH----HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhh
Q 043190 898 PRM-NSM--------NKPAYAA----ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQ 964 (1492)
Q Consensus 898 ~~~-~~~--------~~~~~~~----l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1492)
... .+| ...+.+. +....-.+-++||.+.......+...+..+-
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~----------------------- 667 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ----------------------- 667 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh-----------------------
Confidence 000 000 0001111 1222334678888888877766665554331
Q ss_pred cCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeee----CccC----c
Q 043190 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYD----GKTK----R 1036 (1492)
Q Consensus 965 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~----~~~~----~ 1036 (1492)
...+.-.+.+...|+.+...++.+|++....|..+++++|++++..+.+.++..||...+.+- .... .
T Consensus 668 ----~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~A 743 (1282)
T KOG0921|consen 668 ----EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYA 743 (1282)
T ss_pred ----hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeee
Confidence 112333567888899999999999999999999999999999999999999888886543221 1110 1
Q ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHH
Q 043190 1037 YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYL 1116 (1492)
Q Consensus 1037 ~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l 1116 (1492)
..+.+..+..||.||+||. ++|.|+.+|..-..+.++......+ +...+.+.++.. ..-...+... |+
T Consensus 744 tvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~t~em-----~r~plhemalTi-kll~l~SI~~---fl 811 (1282)
T KOG0921|consen 744 TVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHGTAEM-----FRTPLHEIALTI-KLLRLGSIGE---FL 811 (1282)
T ss_pred eecccccchHhhcccCcee---cccccccccHHHHHHHHHhcCcHhh-----hcCccHHHHhhH-HHHHhhhHHH---HH
Confidence 1345678899999999997 6999999988765554444332211 111122222211 0001111111 11
Q ss_pred hhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHh
Q 043190 1117 SWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGS 1194 (1492)
Q Consensus 1117 ~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~ 1194 (1492)
. .- +++ +.-+.|..+=..|...++.+..+.. |++|+..++.++.|.-.+++.-
T Consensus 812 ~-----ka---------l~~--------~p~dav~e~e~~l~~m~~ld~n~el---t~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 812 G-----KA---------LQP--------PPYDAVIEAEAVLREMGALDANDEL---TPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred h-----hc---------cCC--------CchhhccCchHHHHHhhhhhccCcc---cchhhhhhhccCcccccceeee
Confidence 1 10 111 1123344455567777888766555 9999999999999988887764
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-14 Score=155.29 Aligned_cols=189 Identities=20% Similarity=0.251 Sum_probs=131.2
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeec---CCcc-cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFD---SSYR-PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~---~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
+++.+.+.+|||+.. +..++++=-.. |.-..+.. ..|+ |-.+.+.++.....-+ ....|. ++.. .
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~-Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~k-------pl~~~~-lI~~-~ 427 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHI-PRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFK-------PLAVYA-LITS-N 427 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCC-CceEEeecccceeeecChhhhhceeecccccc-------hHhHHH-HHHH-h
Confidence 456778899999984 77777765444 22111111 1222 2223332222221100 111121 1111 4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+..++|+|++|...+.++++-|.=...+. ...+..+.|+|+...|..
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~---------------------------------~~~~s~~t~~l~~k~r~k 474 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSD---------------------------------NFKVSEFTGQLNGKRRYK 474 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccc---------------------------------cchhhhhhhhhhHHHHHH
Confidence 67899999999999999988776222211 111344679999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
..+.|..|.++|||||+.||||+|+.+++.||+ ||++. +.-.|+||+||+||+| ..|.|+.+.+..+...+
T Consensus 475 ~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~P~---~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 475 MLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDPPA---SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLF 545 (620)
T ss_pred HHHHHhcCCceEEEehhhhhcCCcccccceEee----cCCCc---hhhHHHHhhccccccc--CCceEEEeeccccchHH
Confidence 999999999999999999999999999999998 88753 6778999999999999 66999999988887777
Q ss_pred HHHhcC
Q 043190 240 LRLLTS 245 (1492)
Q Consensus 240 ~~~~~~ 245 (1492)
.++++.
T Consensus 546 ~klL~~ 551 (620)
T KOG0350|consen 546 SKLLKK 551 (620)
T ss_pred HHHHHH
Confidence 776544
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=149.20 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=94.2
Q ss_pred HHHHHh-cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 74 VVDSLR-QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 74 ~~~~~~-~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
+++.+. -..|+||||..+.++..+.++|.-+.- .+...|||-
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGV-------------------------------------EavaIHGGK 455 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGV-------------------------------------EAVAIHGGK 455 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHHccc-------------------------------------eeEEeecCc
Confidence 344443 356899999999999888877643211 145678999
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
.+++|....++||.|+-.|||||++++-|+|+|++..||+ ||-+. ....|.||+||+||.| +.|.|-.+.+
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~---eIENYVHRIGRTGRsg--~~GiATTfIN 526 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE---EIENYVHRIGRTGRSG--KTGIATTFIN 526 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH---HHHHHHHHhcccCCCC--Ccceeeeeec
Confidence 9999999999999999999999999999999999999998 55332 2345999999999999 7899988876
Q ss_pred Ccc
Q 043190 233 HDK 235 (1492)
Q Consensus 233 ~~~ 235 (1492)
.+.
T Consensus 527 K~~ 529 (610)
T KOG0341|consen 527 KNQ 529 (610)
T ss_pred ccc
Confidence 543
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=169.34 Aligned_cols=95 Identities=24% Similarity=0.206 Sum_probs=77.4
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||||++.|+.+++.|.+. |+...||+|++.+|.
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~---------------------------------------g~~lLHG~m~q~dR~ 310 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKE---------------------------------------KFELLTGTLRGAERD 310 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhc---------------------------------------CCeEeeCCCCHHHHh
Confidence 45689999999999999999888532 346789999999999
Q ss_pred -----HHHHHHhC----CC-------ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 159 -----LTERLFSE----GL-------LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 159 -----~ve~~f~~----g~-------i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
.+.+.|++ |. .+|||||+++++|||++. ++||+ +... ..+|+||+||+||.|..
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~----d~aP-----~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC----DLAP-----FESMQQRFGRVNRFGEL 380 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE----CCCC-----HHHHHHHhcccCCCCCC
Confidence 78899987 54 789999999999999998 55554 2211 24699999999999854
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=162.61 Aligned_cols=327 Identities=14% Similarity=0.083 Sum_probs=178.1
Q ss_pred EEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc-------c
Q 043190 708 LLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA-------L 780 (1492)
Q Consensus 708 li~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~-------~ 780 (1492)
+..+.+|||||.+|+-.+-..+.. ++.+|+++|..+|+.|..++++..|+ +..+..++++.+...+. .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 334446999999999988888775 78899999999999999999988874 15688899987765332 2
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc--CCCCccHH---HHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL--GAERGPIL---EVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l--~~~~g~~~---~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
..++|+|+|-. .....++++++|||||-|.- .+++++.+ +..+.|-+ ..+..+|+.|||+
T Consensus 239 G~~~IViGtRS---------AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------~~~~~lvLgSaTP 303 (665)
T PRK14873 239 GQARVVVGTRS---------AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------QHGCALLIGGHAR 303 (665)
T ss_pred CCCcEEEEcce---------eEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------HcCCcEEEECCCC
Confidence 35799999943 22345889999999999943 33444432 23333322 2478899999997
Q ss_pred CChHHHHHHhcCCcceeEecCCC---ccccCcEEEEeccCCccc--c--ccccccChhHHHHHhhcCCCCCeeEEecChH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPS---VRPVPLEVHIQGYPGKFY--C--PRMNSMNKPAYAAICTHSPTKPVLIFVSSRR 928 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~---~r~~~l~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~ 928 (1492)
+ .+... .+........... .+...-.+.+.+...... . .....+...+...+.+....+++|||+|.+.
T Consensus 304 S-les~~---~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrG 379 (665)
T PRK14873 304 T-AEAQA---LVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRG 379 (665)
T ss_pred C-HHHHH---HHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCC
Confidence 4 33322 2111111101101 011111222222211000 0 0001134455666655544449999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCc--------------ccCCCChHHHHHHHhhcC--------------cHHHHHHhc-cceE
Q 043190 929 QTRLTALDLIQFAASDETPR--------------QFLGMPEEDLQMVLSQVT--------------DQNLRQTLQ-FGIG 979 (1492)
Q Consensus 929 ~~~~~a~~L~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~-~~v~ 979 (1492)
.+-.+...=|.....+.+.. .+++.. .....+..+. .+.|....+ ..|.
T Consensus 380 yap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~--~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~ 457 (665)
T PRK14873 380 YVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRA--APDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV 457 (665)
T ss_pred CCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCC--CcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE
Confidence 76655433332211111110 011100 0000011110 122222222 2333
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecc----ccccccCCCCcEEEE--ecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTS----TLAWGVNLPAHLVII--KGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~----~l~~Gvdip~~~~VI--~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
. -++..+++.|. ++.+|||+|+ +++ | +++.|+ +.......+.-+..+-....+.|-+||||
T Consensus 458 r-------~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagrag 524 (665)
T PRK14873 458 T-------SGGDQVVDTVD-AGPALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVR 524 (665)
T ss_pred E-------EChHHHHHhhc-cCCCEEEECCCCccccc-C----CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhc
Confidence 2 23345888896 5999999999 665 3 444433 22111111111111112567899999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHH
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYK 1076 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~ 1076 (1492)
|.. ..|.+++.+ .++...++
T Consensus 525 r~~--~~G~V~iq~-~p~~~~~~ 544 (665)
T PRK14873 525 PRA--DGGQVVVVA-ESSLPTVQ 544 (665)
T ss_pred CCC--CCCEEEEEe-CCCCHHHH
Confidence 965 789999886 44433333
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=168.82 Aligned_cols=182 Identities=21% Similarity=0.298 Sum_probs=138.4
Q ss_pred ccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 8 IRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 8 ~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
+-||+|+||..- .+|+++-|+...+ . ++..++-+..|...+..-..+. . ......-......+.+.|
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~-~--~~~~sfnR~NL~yeV~~k~~~~--~------~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNP-E--LFKSSFNRPNLKYEVSPKTDKD--A------LLDILEESKLRHPDQSGI 489 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCc-c--eecccCCCCCceEEEEeccCcc--c------hHHHHHHhhhcCCCCCeE
Confidence 789999999854 7899999987522 2 4556665556654443222110 0 000111122225678899
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|+|.+|++|+.++..|.+.. ...+++||||++.+|..|...|-
T Consensus 490 IYC~sr~~ce~vs~~L~~~~-------------------------------------~~a~~YHAGl~~~~R~~Vq~~w~ 532 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLG-------------------------------------KSAAFYHAGLPPKERETVQKAWM 532 (941)
T ss_pred EEeCCcchHHHHHHHHHHhc-------------------------------------hhhHhhhcCCCHHHHHHHHHHHh
Confidence 99999999999999987653 23678999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhcC
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTS 245 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~ 245 (1492)
.++++|+|||=.+.+|||.|+++.||+ |+-.+ +-.+|.|-+|||||.| ....|+++++..+......++..
T Consensus 533 ~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk---s~E~YYQE~GRAGRDG--~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 533 SDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK---SFEGYYQEAGRAGRDG--LPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred cCCCeEEEEEeeccCCCCCCceeEEEE----CCCch---hHHHHHHhccccCcCC--CcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999997 54332 4566999999999999 56999999998888877777665
Q ss_pred C
Q 043190 246 Q 246 (1492)
Q Consensus 246 ~ 246 (1492)
.
T Consensus 604 ~ 604 (941)
T KOG0351|consen 604 G 604 (941)
T ss_pred c
Confidence 4
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=147.96 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=129.9
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
..++.|.++||||++- ++.+|+-+... +-.++..+...-.--+.+.+..+.+. ..+. +.+ ...+.+. ...+
T Consensus 398 irpdrQtllFsaTf~~kIe~lard~L~d-pVrvVqg~vgean~dITQ~V~V~~s~--~~Kl---~wl-~~~L~~f-~S~g 469 (731)
T KOG0339|consen 398 IRPDRQTLLFSATFKKKIEKLARDILSD-PVRVVQGEVGEANEDITQTVSVCPSE--EKKL---NWL-LRHLVEF-SSEG 469 (731)
T ss_pred cCCcceEEEeeccchHHHHHHHHHHhcC-CeeEEEeehhccccchhheeeeccCc--HHHH---HHH-HHHhhhh-ccCC
Confidence 4678999999999986 77777766554 33333332222223344444333322 1111 111 1222333 3456
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|+||..+.+++.++..|.-. .+.|+..||.|.+.+|..+..
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk-------------------------------------~~~v~llhgdkdqa~rn~~ls 512 (731)
T KOG0339|consen 470 KVLIFVTKKADAEEIAANLKLK-------------------------------------GFNVSLLHGDKDQAERNEVLS 512 (731)
T ss_pred cEEEEEeccCCHHHHHHHhccc-------------------------------------cceeeeecCchhhHHHHHHHH
Confidence 8999999999999998877532 345899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.|+.+...|||+|+.+|+|+|+|....||+ ||--. +...+.||+||+||+| ..|.++.++++.+.+.
T Consensus 513 ~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar---dIdththrigrtgRag--~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 513 KFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR---DIDTHTHRIGRTGRAG--EKGVAYTLVTEKDAEF 579 (731)
T ss_pred HHhhcCCceEEEeeHhhcCCCccccceeec----ccccc---hhHHHHHHhhhccccc--ccceeeEEechhhHHH
Confidence 999999999999999999999999999997 55321 3334889999999999 6799999999887653
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-13 Score=161.51 Aligned_cols=168 Identities=18% Similarity=0.131 Sum_probs=111.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceE-EEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-QYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMV 86 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 86 (1492)
++.|||||.+. .+++.++.+.. +. +-+..+|..-.. ..+.+.. ...+...+ ...+.+....+.|+||
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~----vv-~IPt~kp~~r~~~~~~v~~t--~~~K~~aL----~~~i~~~~~~~~pvLI 478 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLP----VV-RIPTNRPSQRRHLPDEVFLT--AAAKWAAV----AARVRELHAQGRPVLV 478 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCC----eE-EeCCCCCccceecCCEEEeC--HHHHHHHH----HHHHHHHHhcCCCEEE
Confidence 57899999987 56788888765 22 223444442111 1111111 11222222 2222222245789999
Q ss_pred EEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhC
Q 043190 87 FVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSE 166 (1492)
Q Consensus 87 F~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~ 166 (1492)
||+|++.++.+++.|.+. ...+...||.+...++..+. |+.
T Consensus 479 ft~t~~~se~L~~~L~~~-------------------------------------gi~~~~Lhg~~~~rE~~ii~--~ag 519 (656)
T PRK12898 479 GTRSVAASERLSALLREA-------------------------------------GLPHQVLNAKQDAEEAAIVA--RAG 519 (656)
T ss_pred EeCcHHHHHHHHHHHHHC-------------------------------------CCCEEEeeCCcHHHHHHHHH--HcC
Confidence 999999999999988653 12377889987665555555 555
Q ss_pred CCccEEEeccccccccCCC---cEE-----EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 167 GLLKVLVCTATLAWGVNLP---AHT-----VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 167 g~i~vlvaT~tla~Gvnlp---~~~-----vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+..+|+|||+.++||+|++ .+. +||+ |+... +...|.||+|||||.| ..|.++.+.+.++
T Consensus 520 ~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~---s~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 520 QRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD---SARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred CCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC---CHHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 5557999999999999998 554 7775 44322 3345899999999999 7799999988655
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=153.99 Aligned_cols=311 Identities=17% Similarity=0.185 Sum_probs=183.7
Q ss_pred CcccEEEEcccCCChHHHH--HhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVA--QFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a--~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
+.+++|.||||+ -..||. +-|-..++. ++..+-|..|+..||-.-...++.. ..+.+.| .+.+.+ +.+-
T Consensus 413 kpLKLIIMSATL-RVsDFtenk~LFpi~pP---likVdARQfPVsIHF~krT~~DYi~--eAfrKtc--~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 413 KPLKLIIMSATL-RVSDFTENKRLFPIPPP---LIKVDARQFPVSIHFNKRTPDDYIA--EAFRKTC--KIHKKL-PPGG 483 (1172)
T ss_pred CceeEEEEeeeE-EecccccCceecCCCCc---eeeeecccCceEEEeccCCCchHHH--HHHHHHH--HHhhcC-CCCc
Confidence 368899999999 333433 111112122 3455778888888875444333221 1112221 222222 4567
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhc-----------CC---------------ccccCCCCc-hhhHHHHHHHhhc----
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRY-----------ED---------------LEVFNNDTH-PQLSLIKKDVMKS---- 132 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~-----------~~---------------~~~~~~~~~-~~~~~~~~~~~~~---- 132 (1492)
+|||+....++..++++|++..+.. .. ...|...+. .+.+.........
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999998874310 00 000100000 0000000000000
Q ss_pred --------Cc----------hH-----HHHHhcc--------cEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccc
Q 043190 133 --------RN----------KD-----LIELFGL--------AVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181 (1492)
Q Consensus 133 --------~~----------~~-----l~~~~~~--------gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~G 181 (1492)
.| ++ +.+-... -|-..++=|+.+.+.+|++.-.+|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 00 01 1111111 14567899999999999999999999999999999999
Q ss_pred cCCCcEEEEEec----cceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCccc
Q 043190 182 VNLPAHTVVIKG----TQLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLPIE 250 (1492)
Q Consensus 182 vnlp~~~vVI~~----~~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ie 250 (1492)
+.+|.+.+||.+ ...||...|- .+..+.-||+|||||.| .|.||.+++..-..........++
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~fS~PE--- 717 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEFSLPE--- 717 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhhccHH---
Confidence 999999999985 3558866552 24567788999999998 699999998643321111111111
Q ss_pred cchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHHHHHHHHHhccc
Q 043190 251 SQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMM 330 (1492)
Q Consensus 251 s~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i 330 (1492)
-+.....+.++..-+++. . +...-| |--+++ +..++.|.+.|...|++
T Consensus 718 -Ilk~Pve~lvLqMKsMnI-~----------------kVvnFP--FPtpPd------------~~~L~~Aer~L~~LgAL 765 (1172)
T KOG0926|consen 718 -ILKKPVESLVLQMKSMNI-D----------------KVVNFP--FPTPPD------------RSALEKAERRLKALGAL 765 (1172)
T ss_pred -HhhCcHHHHHHHHHhcCc-c----------------ceecCC--CCCCcc------------HHHHHHHHHHHHHhccc
Confidence 111122222332222221 1 111111 000111 46788999999999999
Q ss_pred cccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcC
Q 043190 331 RFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRH 368 (1492)
Q Consensus 331 ~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~ 368 (1492)
+.+ | .+|++|+.||.|+++|.-.+++.-.-..+
T Consensus 766 d~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 766 DSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred ccc---C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 753 3 69999999999999999998887654443
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=151.79 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=89.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |+++|.-.--.+ +.| -|..+.||-|||+++.+|+.-.... |..+-+++..--||..=++.+.. +-.++|+
T Consensus 76 G~r-~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~--GkgVhVVTvNdYLA~RDae~mg~-vy~fLGL 148 (925)
T PRK12903 76 GKR-PYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT--GKGVIVSTVNEYLAERDAEEMGK-VFNFLGL 148 (925)
T ss_pred CCC-cCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc--CCceEEEecchhhhhhhHHHHHH-HHHHhCC
Confidence 654 777777655444 344 3789999999999999988654333 67777888888888776665555 4455699
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++...+..... +..-.+||.++|...| +.|-.+.. .....+.+.+.||||+|.+
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 9999988766543 3334789999999875 33332221 1233467889999999943
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-12 Score=152.60 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|...--.+. +--|..+.||-|||+++.+|+.-.... |..+-++++..-||..=++.+.. +-.++|+
T Consensus 83 G~r-~ydVQliGgl~Lh---~G~IAEM~TGEGKTL~atlpaylnAL~--GkgVhVVTvNdYLA~RDae~m~~-vy~~LGL 155 (939)
T PRK12902 83 GMR-HFDVQLIGGMVLH---EGQIAEMKTGEGKTLVATLPSYLNALT--GKGVHVVTVNDYLARRDAEWMGQ-VHRFLGL 155 (939)
T ss_pred CCC-cchhHHHhhhhhc---CCceeeecCCCChhHHHHHHHHHHhhc--CCCeEEEeCCHHHHHhHHHHHHH-HHHHhCC
Confidence 554 6677765544443 334889999999999999988765443 78899999999999987776665 4455599
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++..++.+...+ ..-.+||+++|+..| +.|-.+.. .....+.+.+.||||+|.+
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 99999887765543 334789999999886 33322221 1234577889999999953
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-12 Score=155.62 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. +++.|.-..-.+ .+.-|..+.||.|||+++.+|+.-... .|..+-+++++..||.+-++.+... -..+|+
T Consensus 74 G~r-~ydvQlig~l~L---~~G~IaEm~TGEGKTL~a~l~ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pv-y~~LGL 146 (870)
T CHL00122 74 GLR-HFDVQLIGGLVL---NDGKIAEMKTGEGKTLVATLPAYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQI-YRFLGL 146 (870)
T ss_pred CCC-CCchHhhhhHhh---cCCccccccCCCCchHHHHHHHHHHHh--cCCceEEEeCCHHHHHHHHHHHHHH-HHHcCC
Confidence 665 677776654443 345688999999999999998854333 3788999999999999988877664 455599
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++..++.+...+ ..-.+||+++|...+ +.+-.+.. .....+.+.+.||||+|.+
T Consensus 147 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred ceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 99999887765543 334789999999764 33322211 1223467889999999943
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-13 Score=142.84 Aligned_cols=151 Identities=25% Similarity=0.314 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHhhhc------CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 688 HFNPIQTQIFHILYH------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
.|+++|.+++..+.+ ..+++++.+|||||||.++...+.+... ++++++|++.|+.|..+.+.......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 389999999998773 2689999999999999999877777653 99999999999999998885533221
Q ss_pred cCCEEEEE------------cCCCCc---chhccCCCcEEEECchhhhHhhhccc---------CccccCcccEEEEecc
Q 043190 762 LGKEMVEM------------TGDYTP---DLMALLSADIIISTPEKWDGISRNWH---------SRNYVKKVGLMILDEI 817 (1492)
Q Consensus 762 ~g~~v~~~------------~g~~~~---~~~~~~~~~Iiv~Tpe~l~~l~~~~~---------~~~~l~~i~liViDEa 817 (1492)
...... ...... ........+++++|..+|........ ........++||+|||
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 78 --YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp --EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred --hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 111110 000000 11123467999999999876654311 1233457789999999
Q ss_pred cccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 818 HLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 818 H~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
|+...... +..++. .....+|+||||+.
T Consensus 156 H~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 97742211 333332 34778999999974
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=132.21 Aligned_cols=141 Identities=26% Similarity=0.343 Sum_probs=101.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALL 781 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~ 781 (1492)
+++++.+|||+|||.++..++.+....++.++++|++|++.++.|..+.+...... +..+..+.+....... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 47899999999999999999998877656789999999999999999888775543 4667777665443322 245
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
..+|+++|++.+........ ......+++|+||+|.+......... .... .......+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~--~~~~----~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG--LKIL----LKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH--HHHH----hhCCccceEEEEeccC
Confidence 78999999998765555422 23567899999999988543211111 0011 1134578899999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=145.21 Aligned_cols=320 Identities=22% Similarity=0.229 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHH--HHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc-
Q 043190 688 HFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAEL--AMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ- 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l--~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~- 761 (1492)
.++++|.+.+.- +++++-|.|+.-..|-|||++.+. ..+.... +-.+.-+|++|.-.|.+ |...|.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~-~~~GPfLVi~P~StL~N-----W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK-GIPGPFLVIAPKSTLDN-----WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc-CCCCCeEEEeeHhhHHH-----HHHHHHHhC
Confidence 589999997764 457788999999999999986542 2233322 23577899999877654 44444443
Q ss_pred cCCEEEEEcCCCCcchh------ccCCCcEEEECchhhhHhhhcccCccccC--cccEEEEecccccCCCCccHHHHHHH
Q 043190 762 LGKEMVEMTGDYTPDLM------ALLSADIIISTPEKWDGISRNWHSRNYVK--KVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~--~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.++++..++|+...... .....+|+|+|+|... +. ...++ ..+++||||||++..+.. .+-.++
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i---~d---k~~lk~~~W~ylvIDEaHRiKN~~s-~L~~~l- 312 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAI---KD---KSFLKKFNWRYLVIDEAHRIKNEKS-KLSKIL- 312 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHH---hh---HHHHhcCCceEEEechhhhhcchhh-HHHHHH-
Confidence 36889999998643211 1226799999999652 21 11122 468999999999854322 222223
Q ss_pred HHHHhhhccCCceEEEEEcCCC-CC-------------------hHHHHHHhcCCcc-----eeEecCCCcccc------
Q 043190 834 RMRYISSQTERAVRFIGLSTAL-AN-------------------AGDLADWLGVGEI-----GLFNFKPSVRPV------ 882 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl-~~-------------------~~~~~~~l~~~~~-----~~~~~~~~~r~~------ 882 (1492)
+.+ ....| +++++|+ .| .+++..|+..... .+.......+|.
T Consensus 313 --r~f----~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 313 --REF----KTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred --HHh----cccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHH
Confidence 322 22334 5667775 22 3677788865321 000000000000
Q ss_pred ---------CcEEEE-ecc-------------------CCcccccccc--------------------------------
Q 043190 883 ---------PLEVHI-QGY-------------------PGKFYCPRMN-------------------------------- 901 (1492)
Q Consensus 883 ---------~l~~~~-~~~-------------------~~~~~~~~~~-------------------------------- 901 (1492)
.-++.+ .+. .+........
T Consensus 386 ~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdeh 465 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEH 465 (971)
T ss_pred HhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchH
Confidence 000000 000 0000000000
Q ss_pred ----ccChhHHHHHh--hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhc
Q 043190 902 ----SMNKPAYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQ 975 (1492)
Q Consensus 902 ----~~~~~~~~~l~--~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 975 (1492)
+-+-.+++.+. ....+.+||||..-.+ +-..|. .....-+
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILe------------------------------Dyc~~R~ 511 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILE------------------------------DYCMLRG 511 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHH------------------------------HHHHhcC
Confidence 00000111111 1244566777743211 111111 1123346
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcC---CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhccc
Q 043190 976 FGIGLHHAGLNDKDRSLVEELFANN---KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052 (1492)
Q Consensus 976 ~~v~~~h~~l~~~~R~~v~~~f~~g---~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRa 1052 (1492)
+...-+-|..+.++|...++.|... +.=.|++|.+.+-|||+-+.++||. ||. |+.+..=+|..-||
T Consensus 512 y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl----yDS------DWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 512 YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL----YDS------DWNPQVDLQAMDRA 581 (971)
T ss_pred ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE----ecC------CCCchhhhHHHHHH
Confidence 7788889999999999999999754 3457899999999999999999997 663 33444446888888
Q ss_pred CCCCCCCceEEEEEecCCcH
Q 043190 1053 GRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1053 gR~g~~~~G~~i~l~~~~~~ 1072 (1492)
.|-|...+-.+|.|++++..
T Consensus 582 HRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred HhhCCcCceEEEEEeccchH
Confidence 88888888999999988753
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-11 Score=145.62 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=49.5
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.+++.+++.||||+|||++|++|++..+....+.++||++||++|+.|+++++..
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHH
Confidence 35788999999999999999999999876644578999999999999999998775
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=136.76 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=121.7
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecC--CcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDS--SYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
.--.|.||||-|+ ++.+-+... ......... ..+|.|+-..+...+-++...+ +.+...++..+.++.+.+.|+
T Consensus 233 ~g~~IylTATp~k--~l~r~~~~g-~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 233 EGATIYLTATPTK--KLERKILKG-NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cCceEEEecCChH--HHHHHhhhC-CeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHHHHhcCCcE
Confidence 3457899999776 333333221 111111111 2344444333322221111111 112223455666677889999
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
|||+++....+++|..|.+.... ..+++-|+. ...|....++|
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~~R~EkV~~f 351 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQHRKEKVEAF 351 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--CccHHHHHHHH
Confidence 99999999999999888655331 125666654 56788888999
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|+|++++|++|++|+|||.+|.++|.+-| .+...|+..+.+|++||+||.---+.|.++.+.....
T Consensus 352 R~G~~~lLiTTTILERGVTfp~vdV~Vlg-----aeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 352 RDGKITLLITTTILERGVTFPNVDVFVLG-----AEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred HcCceEEEEEeehhhcccccccceEEEec-----CCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999999999999999999999999943 4434578888999999999987667788888865543
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=159.59 Aligned_cols=209 Identities=21% Similarity=0.324 Sum_probs=141.9
Q ss_pred CCCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccc---cceEEEEEeeCCchhHHHHHhhHHHHHHHHHH
Q 043190 2 ESTQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPI---PLAQQYIGISEPNFAARNELLSEICYKKVVDS 77 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1492)
+..+.+.|.|.+|||+|. .+.+|.-+... |..+. ++ +|.+ .+.+.+..+.. ...+...+.++ +..
T Consensus 541 ~nlrpdrQtvlfSatfpr~m~~la~~vl~~-Pveii-v~--~~svV~k~V~q~v~V~~~--e~eKf~kL~eL-----l~e 609 (997)
T KOG0334|consen 541 QNLRPDRQTVLFSATFPRSMEALARKVLKK-PVEII-VG--GRSVVCKEVTQVVRVCAI--ENEKFLKLLEL-----LGE 609 (997)
T ss_pred hhcchhhhhhhhhhhhhHHHHHHHHHhhcC-CeeEE-Ec--cceeEeccceEEEEEecC--chHHHHHHHHH-----HHH
Confidence 345678899999999998 77788887764 54433 22 2222 23334433331 11222222222 122
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
..+..++||||.+...|..+.+.|.+.. +.+-..|||.++.+|
T Consensus 610 ~~e~~~tiiFv~~qe~~d~l~~~L~~ag-------------------------------------~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 610 RYEDGKTIIFVDKQEKADALLRDLQKAG-------------------------------------YNCDSLHGGVDQHDR 652 (997)
T ss_pred HhhcCCEEEEEcCchHHHHHHHHHHhcC-------------------------------------cchhhhcCCCchHHH
Confidence 2447899999999999999988887431 112236999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+++.|++|.+.+|+||+.+|+|+|++...+||+ ||... .|.+ |.||+||+||.| +.|.|+.+.++++..
T Consensus 653 ~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn-h~ed--yvhR~gRTgrag--rkg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 653 SSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN-HYED--YVHRVGRTGRAG--RKGAAVTFITPDQLK 723 (997)
T ss_pred HhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch-hHHH--HHHHhcccccCC--ccceeEEEeChHHhh
Confidence 99999999999999999999999999999999997 77553 2333 999999999999 889999999885432
Q ss_pred HH----HHHhcCCCccccchhHhHHHHHHHHHHhC
Q 043190 238 YY----LRLLTSQLPIESQFISSLKDNLNAEVALG 268 (1492)
Q Consensus 238 ~~----~~~~~~~~~ies~l~~~l~~~l~~ei~~~ 268 (1492)
+- .++.....|.. .++..|..-..++...|
T Consensus 724 ~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 724 YAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred hHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 21 11111122222 55566666666655544
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=167.31 Aligned_cols=197 Identities=25% Similarity=0.170 Sum_probs=138.6
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHH---HHHhhHHHHHHHHHHHhc
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAAR---NELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (1492)
-+++.|+|+.|||+.|+.++++-+.... ...- ++.+..|-.....+...+..-.... ...... .-..+...+.+
T Consensus 229 ~~~~~q~i~~SAT~~np~e~~~~l~~~~-f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~-~~~~~~~~~~~ 305 (851)
T COG1205 229 YGSPLQIICTSATLANPGEFAEELFGRD-FEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE-LATLAALLVRN 305 (851)
T ss_pred cCCCceEEEEeccccChHHHHHHhcCCc-ceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH-HHHHHHHHHHc
Confidence 4578999999999999988888776542 2221 5566666666555544431111111 011111 11223334578
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+-++|||+.||+.++.............+ .. +...+..|||||.+++|.++
T Consensus 306 ~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~----------------------------l~~~v~~~~~~~~~~er~~i 356 (851)
T COG1205 306 GIQTLVFFRSRKQVELLYLSPRRRLVREG-GK----------------------------LLDAVSTYRAGLHREERRRI 356 (851)
T ss_pred CceEEEEEehhhhhhhhhhchhHHHhhcc-hh----------------------------hhhheeeccccCCHHHHHHH
Confidence 89999999999999998766655443322 11 12238999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
|..|+.|++.++++|++|+.|||+.+...||..-.+.. +..+++||+|||||.+ ..+..+++...+..+.|.
T Consensus 357 e~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~------s~~~~~Q~~GRaGR~~--~~~l~~~v~~~~~~d~yy 428 (851)
T COG1205 357 EAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV------SVLSFRQRAGRAGRRG--QESLVLVVLRSDPLDSYY 428 (851)
T ss_pred HHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc------hHHHHHHhhhhccCCC--CCceEEEEeCCCccchhh
Confidence 99999999999999999999999999999996333221 4567999999999998 667788777766666554
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-12 Score=153.68 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=115.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE--EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
++.||+.|... .++|.+..+.. +. .-+..+|+-.... .+... ...+... +...+.+....+.|+|
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~----v~-~IPt~kp~~r~d~~d~i~~~---~~~K~~a----i~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS----VV-KIPTNKPIIRIDYPDKIYAT---LPEKLMA----TLEDVKEYHETGQPVL 428 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC----EE-EcCCCCCeeeeeCCCeEEEC---HHHHHHH----HHHHHHHHhhCCCCEE
Confidence 57899999643 44455444332 32 3355666543321 11111 1112211 1223333335688999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|++.++.++..|.+. +....+.||.+.+.+|..+.++++
T Consensus 429 Ift~s~~~se~ls~~L~~~-------------------------------------gi~~~~L~a~~~~~E~~ii~~ag~ 471 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLRE-------------------------------------GIPHNLLNAQNAAKEAQIIAEAGQ 471 (762)
T ss_pred EEECcHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCChHHHHHHHHHcCC
Confidence 9999999999998888653 123667899999999999988888
Q ss_pred CCCccEEEeccccccccCCC---------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 166 EGLLKVLVCTATLAWGVNLP---------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp---------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.| +|+|||+.++||+|+| +..||++ |+++.. .. ..||+|||||.| ..|.++.+++.++
T Consensus 472 ~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit----~~~ps~---ri-d~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 472 KG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT----ERMENS---RV-DLQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred CC--eEEEEccccccccCCCCCccccccCCeEEEEe----cCCCCc---HH-HHHhhhcccCCC--CceeEEEEEccch
Confidence 88 7999999999999999 8999996 665432 22 489999999999 7899999988665
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=140.24 Aligned_cols=182 Identities=22% Similarity=0.379 Sum_probs=129.2
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh---c
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR---Q 80 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 80 (1492)
++..++||.||..| ..|..+.|+.. ..|.|...+..-.|...+..-+.. .+-+.+.+.+.++ .
T Consensus 249 ~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qkp~n---------~dd~~edi~k~i~~~f~ 316 (695)
T KOG0353|consen 249 KGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQKPGN---------EDDCIEDIAKLIKGDFA 316 (695)
T ss_pred CCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeCCCC---------hHHHHHHHHHHhccccC
Confidence 46789999999988 77777777754 244566666444565544433221 1122334444443 3
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
|...||||-|+++|+++|..|..... ..+.+||.|.|++|.-+
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi-------------------------------------~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGI-------------------------------------HAGAYHANLEPEDKSGA 359 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCc-------------------------------------cccccccccCccccccc
Confidence 66789999999999999998876532 25678999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccce------ec---------------CCCCCcccCchhh--------
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQL------YD---------------PKAGGWRDLGMLD-------- 211 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~------~~---------------~~~~~~~~~~~~~-------- 211 (1492)
-+.+..|+|+|+|||-.+.+|||-|++++||+...+ |. ...|+-+.+.++.
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 999999999999999999999999999999984322 22 1112223333222
Q ss_pred -------hhhccCCCCCCccceEEEEeCCccHHH
Q 043190 212 -------IFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 212 -------~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
-.|||||.+ ....||+.+.-.+.-+
T Consensus 440 favfsekesgragrd~--~~a~cilyy~~~difk 471 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDD--MKADCILYYGFADIFK 471 (695)
T ss_pred eeeecchhccccccCC--CcccEEEEechHHHHh
Confidence 579999987 7799999987555433
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=154.24 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=96.1
Q ss_pred CHHHHHHHHhhhc-------CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 690 NPIQTQIFHILYH-------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~-------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
..+|-+|+..+.. .|=-++--|.||||||++=.-.|...-....+.+..+-.-.|.|..|.-+.+++.++-.
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~- 488 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS- 488 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC-
Confidence 4689999887641 12234556999999999765544443333456688888889998888888877765322
Q ss_pred CCEEEEEcCC-------------------------------------------CCc-----------chhccCCCcEEEE
Q 043190 763 GKEMVEMTGD-------------------------------------------YTP-----------DLMALLSADIIIS 788 (1492)
Q Consensus 763 g~~v~~~~g~-------------------------------------------~~~-----------~~~~~~~~~Iiv~ 788 (1492)
.-.+.++.|+ ... ..+..-.+.|+||
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 1223333221 000 0001114699999
Q ss_pred CchhhhHhhhcccC-ccccC----cccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 789 TPEKWDGISRNWHS-RNYVK----KVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 789 Tpe~l~~l~~~~~~-~~~l~----~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
|+..+......... ...+. .-+.|||||+|.++......+..++..+ .. .+.++++||||+|.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~----~~--lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLA----GL--LGSRVLLSSATLPP 636 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHH----HH--cCCCEEEEeCCCCH
Confidence 99997655421111 11111 2368999999977544333333333322 22 36789999999987
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=131.23 Aligned_cols=106 Identities=33% Similarity=0.542 Sum_probs=88.5
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.|.+. ..++.++||+++..+|.
T Consensus 26 ~~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~ 68 (131)
T cd00079 26 KKGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEERE 68 (131)
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHH
Confidence 35789999999999999988877641 23589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEE
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
.+.+.|.+|..++|+||+.+++|+|+|..+.||. +++ .|+...+.|++||+||.| ..|.++++
T Consensus 69 ~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~---~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 69 EVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDL---PWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCC---CCCHHHheecccccccCC--CCceEEeC
Confidence 9999999999999999999999999997666663 332 345566999999999999 46877653
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=157.80 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=114.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||.|... .+++.+..+. ++..+ +..+|+-....--.+.. ....+...+ ...+.+....+.|+|||
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l----~v~~I-Pt~kp~~r~d~~~~i~~-~~~~K~~al----~~~i~~~~~~~~pvLIf 434 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNM----EVVQI-PTNRPIIRIDYPDKVFV-TLDEKYKAV----IEEVKERHETGRPVLIG 434 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCC----cEEEC-CCCCCcccccCCCeEEc-CHHHHHHHH----HHHHHHHHhcCCCEEEE
Confidence 57799999754 3344444433 23333 45566543221000101 111222211 12222222468899999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|++.++.++..|.+. ...+...||.+.+.+|..+..+++.|
T Consensus 435 ~~t~~~se~l~~~L~~~-------------------------------------gi~~~~L~~~~~~~e~~~i~~ag~~g 477 (790)
T PRK09200 435 TGSIEQSETFSKLLDEA-------------------------------------GIPHNLLNAKNAAKEAQIIAEAGQKG 477 (790)
T ss_pred eCcHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCccHHHHHHHHHcCCCC
Confidence 99999999999888653 12377889999999999998888877
Q ss_pred CccEEEeccccccccCC---CcEE-----EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 LLKVLVCTATLAWGVNL---PAHT-----VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnl---p~~~-----vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+|+|||+.++||+|+ |.+. +||+ |+... +...|.||+|||||.| ..|.++.+++.++
T Consensus 478 --~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~----~d~p~---s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 478 --AVTVATNMAGRGTDIKLGEGVHELGGLAVIG----TERME---SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred --eEEEEccchhcCcCCCcccccccccCcEEEe----ccCCC---CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 799999999999999 6887 8886 44322 3345999999999999 7899999887654
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-10 Score=145.94 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHhh---hcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHIL---YHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~---~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
||+ .++-|.+....+ +.+ ++.++|.||||+|||++|++|.+..... .+.++||-+.|++|-+|....
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHhh
Confidence 554 899999965544 444 4678999999999999999998765443 378999999999999998643
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=145.45 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=97.8
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
++..+|||++.|..++.++..|.+...... ..|.. .+-.-|-.||++.++..
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~--~rFiG--------------------------Qa~r~~~~GMsQkeQ~e 416 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKAR--VRFIG--------------------------QASREGDKGMSQKEQKE 416 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcce--eEEee--------------------------ccccccccccCHHHHHH
Confidence 346899999999999999988876543211 12321 11123458999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc--cHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD--KLA 237 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~--~~~ 237 (1492)
+.+.|++|...||||||+.+.|+|+|.++.||- |+|-. +++-++||.||+||- +.|.++++.... +..
T Consensus 417 iI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YEpvp---SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdea 486 (542)
T COG1111 417 IIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YEPVP---SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEA 486 (542)
T ss_pred HHHHHhcCCceEEEEcccccccCCCCcccEEEE----ecCCc---HHHHHHHhhCccccC---CCCeEEEEEecCchHHH
Confidence 999999999999999999999999999999994 88754 777899999999995 679999998877 444
Q ss_pred HHH
Q 043190 238 YYL 240 (1492)
Q Consensus 238 ~~~ 240 (1492)
+|.
T Consensus 487 yy~ 489 (542)
T COG1111 487 YYY 489 (542)
T ss_pred HHH
Confidence 444
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-12 Score=141.58 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=125.5
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc-hhHHHHHhhHHHHHHHHHH--Hh-
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-FAARNELLSEICYKKVVDS--LR- 79 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~- 79 (1492)
+++--|+|.||-.- -+|++.-|.-..|-.+| -.+.+|. +| |+.+.-++ .......+.+.+...+-.. .+
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF-kTP~FR~-NL---FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~ 249 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIF-KTPTFRD-NL---FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQ 249 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhc-cCcchhh-hh---hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhc
Confidence 46778999999754 67888888655333332 1233442 11 11110000 0011112222222111100 00
Q ss_pred c----CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChh
Q 043190 80 Q----GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRS 155 (1492)
Q Consensus 80 ~----~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~ 155 (1492)
. .+=.||||.||.+||++|-.+... +-|.-.+||||-..
T Consensus 250 ~~K~~~GCGIVYCRTR~~cEq~AI~l~~~-------------------------------------Gi~A~AYHAGLK~~ 292 (641)
T KOG0352|consen 250 NKKTFTGCGIVYCRTRNECEQVAIMLEIA-------------------------------------GIPAMAYHAGLKKK 292 (641)
T ss_pred CCCCcCcceEEEeccHHHHHHHHHHhhhc-------------------------------------CcchHHHhcccccc
Confidence 0 123799999999999999766432 11233579999999
Q ss_pred hHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 156 DRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 156 ~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+|..|.+.+.+|++.|||||..+.+|||-|.+++||+ ||+.. +...|.|-.|||||.| ....|=+.++.++
T Consensus 293 ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q---n~AgYYQESGRAGRDG--k~SyCRLYYsR~D 363 (641)
T KOG0352|consen 293 ERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ---NLAGYYQESGRAGRDG--KRSYCRLYYSRQD 363 (641)
T ss_pred hhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh---hhHHHHHhccccccCC--Cccceeeeecccc
Confidence 9999999999999999999999999999999999996 88764 5567999999999999 7799999999888
Q ss_pred HHHHHHH
Q 043190 236 LAYYLRL 242 (1492)
Q Consensus 236 ~~~~~~~ 242 (1492)
.....-+
T Consensus 364 ~~~i~FL 370 (641)
T KOG0352|consen 364 KNALNFL 370 (641)
T ss_pred hHHHHHH
Confidence 7665433
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-12 Score=148.41 Aligned_cols=87 Identities=17% Similarity=0.293 Sum_probs=69.1
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||+|++.++.+++.|.+.. ....+..|||.+++.+|..
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~-----------------------------------~~~~~~~l~g~~~~~~R~~ 315 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG-----------------------------------LGDDIGRITGFAPKKDRER 315 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC-----------------------------------CCceEEeeecCCCHHHHHH
Confidence 56799999999999999999886531 0123778999999999865
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccC
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAG 217 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAG 217 (1492)
+ ++.+|||||+++++|||+|...||+ +|. +..+|+||+||+|
T Consensus 316 ~------~~~~iLVaTdv~~rGiDi~~~~vi~------~p~----~~~~yiqR~GR~g 357 (357)
T TIGR03158 316 A------MQFDILLGTSTVDVGVDFKRDWLIF------SAR----DAAAFWQRLGRLG 357 (357)
T ss_pred h------ccCCEEEEecHHhcccCCCCceEEE------CCC----CHHHHhhhcccCC
Confidence 4 4789999999999999999885553 221 3346999999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-12 Score=115.50 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=68.0
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcc
Q 043190 972 QTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGR 1051 (1492)
Q Consensus 972 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GR 1051 (1492)
+..+..+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||. |+ .+.+..+|.|++||
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~------~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YD------PPWSPEEYIQRIGR 73 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SS------SESSHHHHHHHHTT
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cc------cCCCHHHHHHHhhc
Confidence 445789999999999999999999999999999999999999999999999997 33 24478999999999
Q ss_pred cCCCC
Q 043190 1052 AGRPQ 1056 (1492)
Q Consensus 1052 agR~g 1056 (1492)
+||.|
T Consensus 74 ~~R~g 78 (78)
T PF00271_consen 74 AGRIG 78 (78)
T ss_dssp SSTTT
T ss_pred CCCCC
Confidence 99975
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-11 Score=151.78 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=59.2
Q ss_pred cCCCCCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
|....+++.|.+.+.. ++.+++.+++.||||+|||++|+.|++..... .+.+++|.++|+.|..|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-EGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-cCCcEEEECCCHHHHHHHHHhhcc
Confidence 4455699999997754 45567779999999999999999999987554 358999999999999998877544
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-12 Score=157.02 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+.+..+++.++||||+|++.++.+++.|.+.. ..+++.||
T Consensus 432 l~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-------------------------------------i~~~~lh~ 474 (655)
T TIGR00631 432 LSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-------------------------------------IKVRYLHS 474 (655)
T ss_pred HHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-------------------------------------cceeeeeC
Confidence 34555556788999999999999999998887541 13788999
Q ss_pred CCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEE
Q 043190 151 GMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
++++.+|..+++.|++|.+.|||||+.|++|+|+|.+.+||. +|.+..+ -+..+|+||+|||||.. .|.++
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG~p~~~~~~iqriGRagR~~---~G~vi 547 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNV---NGKVI 547 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCcccccCCCCHHHHHHHhcCCCCCC---CCEEE
Confidence 999999999999999999999999999999999999997764 5543322 24567999999999973 69999
Q ss_pred EEeCCccH
Q 043190 229 IITSHDKL 236 (1492)
Q Consensus 229 ~~~~~~~~ 236 (1492)
++++..+.
T Consensus 548 ~~~~~~~~ 555 (655)
T TIGR00631 548 MYADKITD 555 (655)
T ss_pred EEEcCCCH
Confidence 99886543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-12 Score=125.57 Aligned_cols=105 Identities=33% Similarity=0.477 Sum_probs=90.6
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++||||++...++.++..|.+ ...++.++||+++..+|..+.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 72 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----------------------------------PGIKVAALHGDGSQEEREEVLK 72 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----------------------------------cCCcEEEEECCCCHHHHHHHHH
Confidence 578999999999999988877733 2567899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
.|++|..++|++|+++++|+|+|..++||. ++ .+.+..++.|++||+||.| ..|.++++
T Consensus 73 ~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~------~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 73 DFREGEIVVLVATDVIARGIDLPNVSVVIN----YD------LPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHcCCCcEEEEcChhhcCcChhhCCEEEE----eC------CCCCHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999888775 22 3456889999999999988 57877653
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-10 Score=146.32 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=63.1
Q ss_pred hhcCCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..|+|..++|.|.+....+ +..++++++.||||+|||++.+.+.+...... ...+++|.+.|.+=..|..+++++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 4578998899999977654 35788999999999999999999999876532 237999999999999999888877
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-12 Score=150.60 Aligned_cols=339 Identities=16% Similarity=0.236 Sum_probs=179.4
Q ss_pred CCCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 687 SHFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
..|+|+|.+|+.+++ ..+...=+.+..|+|||+.++- |.+.+. ..++|+++|+.+|..|..++|...- .+.
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---~~~iL~LvPSIsLLsQTlrew~~~~--~l~ 233 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---AARILFLVPSISLLSQTLREWTAQK--ELD 233 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---hhheEeecchHHHHHHHHHHHhhcc--Ccc
Confidence 469999999999875 2344555667789999998754 444444 4899999999999999999998632 224
Q ss_pred CEEEEEcCCCCcch----------------------------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEe
Q 043190 764 KEMVEMTGDYTPDL----------------------------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILD 815 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~----------------------------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViD 815 (1492)
++...+++|..... +...+--|+++|++.+..+-.. ...-+..+++||.|
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDliicD 311 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDLIICD 311 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccEEEec
Confidence 44444444322110 0111347999999987544332 23447889999999
Q ss_pred cccccCC-C-CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcC-CcceeEe------cCCCccc-----
Q 043190 816 EIHLLGA-E-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV-GEIGLFN------FKPSVRP----- 881 (1492)
Q Consensus 816 EaH~l~~-~-~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~-~~~~~~~------~~~~~r~----- 881 (1492)
|||+-.. . .|. =...+.++. ..+.-+..+.+-|+||+.-..+-++--.. ....+.. |.+.+..
T Consensus 312 EAHRTtGa~~a~d-d~saFt~vH--s~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fge 388 (1518)
T COG4889 312 EAHRTTGATLAGD-DKSAFTRVH--SDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGE 388 (1518)
T ss_pred chhccccceeccc-Ccccceeec--CcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHH
Confidence 9995411 0 000 001111110 00001123446778886322111100000 0000000 0000000
Q ss_pred -------cCcEEEEeccCCcccccccc--------ccChh-------HHHHHhhc--------------CCCCCeeEEec
Q 043190 882 -------VPLEVHIQGYPGKFYCPRMN--------SMNKP-------AYAAICTH--------------SPTKPVLIFVS 925 (1492)
Q Consensus 882 -------~~l~~~~~~~~~~~~~~~~~--------~~~~~-------~~~~l~~~--------------~~~~~~LIF~~ 925 (1492)
....+.+...........+. .+... ++..+... .+..+.+-||.
T Consensus 389 Av~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k 468 (1518)
T COG4889 389 AVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAK 468 (1518)
T ss_pred HHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHH
Confidence 00111111111110000000 00000 01111110 11235677777
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH---HhcCCc
Q 043190 926 SRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL---FANNKI 1002 (1492)
Q Consensus 926 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~---f~~g~~ 1002 (1492)
+.+....++..+.+... .+...++++ ...+...+....|.|+..+|...+.. |...+.
T Consensus 469 ~I~tSK~i~~sFe~Vve-----------------~Y~~Elk~d--~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 469 DIKTSKQIAESFETVVE-----------------AYDEELKKD--FKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred hhHHHHHHHHHHHHHHH-----------------HHHHHHHhc--CCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 77777777665533211 111111111 11223344444578999998555443 456789
Q ss_pred eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEE
Q 043190 1003 QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVI 1065 (1492)
Q Consensus 1003 ~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~ 1065 (1492)
+||---..+++|||+|+.+-||- |+|+. +.-+++|.+||+.|...+ +.|..++
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred eeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999984 77765 578999999999996432 2344443
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-12 Score=116.31 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=65.1
Q ss_pred hcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCC
Q 043190 141 FGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 141 ~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~ 220 (1492)
....++++||++++.+|..+++.|++|..+|||||+.+++|||+|..++||. |++ +++...|.|++||+||.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~---~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDP---PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSS---ESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----ccc---CCCHHHHHHHhhcCCCCC
Confidence 3556999999999999999999999999999999999999999999999996 443 345666999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-11 Score=144.43 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=115.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||.|... .+++.+..+.. +. .-+..+|+-....--.+-.. ...+. .. +.+.+.+....|.|+|||
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~----vv-~IPtnkp~~R~d~~d~i~~t-~~~k~---~a-i~~~i~~~~~~grpvLV~ 411 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLE----VV-VVPTNRPVIRKDLSDLVYKT-EEEKW---KA-VVDEIKERHAKGQPVLVG 411 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCC----EE-EeCCCCCeeeeeCCCeEEcC-HHHHH---HH-HHHHHHHHHhcCCCEEEE
Confidence 57799999865 44455555443 33 33456664322211011111 11111 11 223344444779999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|...++.+++.|.+.. ......||+ +.+|+.....|+.|
T Consensus 412 t~si~~se~ls~~L~~~g-------------------------------------i~~~~Lna~--q~~rEa~ii~~ag~ 452 (745)
T TIGR00963 412 TTSVEKSELLSNLLKERG-------------------------------------IPHNVLNAK--NHEREAEIIAQAGR 452 (745)
T ss_pred eCcHHHHHHHHHHHHHcC-------------------------------------CCeEEeeCC--hHHHHHHHHHhcCC
Confidence 999999999998887532 125677888 88999999999999
Q ss_pred CccEEEeccccccccCCCc-------EEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 LLKVLVCTATLAWGVNLPA-------HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~-------~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
...|+|||+.++||+|++. ..+||. |+... +...+.|+.|||||.| ..|.+..+.+.++
T Consensus 453 ~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~----t~~p~---s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 453 KGAVTIATNMAGRGTDIKLEEVKELGGLYVIG----TERHE---SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred CceEEEEeccccCCcCCCccchhhcCCcEEEe----cCCCC---cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 9999999999999999988 447775 32211 3345899999999999 7899999887665
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=150.58 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=84.0
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
.+.++++||||++.++++.+++.|.+.. ..+.+.||++++++|
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~g-------------------------------------~~v~~i~G~~~~~eR 383 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKVY-------------------------------------DKVYYVSGEVDTEDR 383 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHcC-------------------------------------CCEEEEeCCCCHHHH
Confidence 3567889999999999988888776531 138899999999999
Q ss_pred HHHHHHHhCCCccEEEec-cccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCC
Q 043190 158 GLTERLFSEGLLKVLVCT-ATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQF 221 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT-~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~ 221 (1492)
..+++.|++|...||||| +.+++|+|+|..+.||. ++|.. +...|+||+||+||++.
T Consensus 384 ~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~---s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 384 NEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK---SKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc---chhhhhhhhhccccCCC
Confidence 999999999999999999 89999999999999985 44432 44569999999999873
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=154.91 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+....+++.++||||+|++.++.+++.|.+. +..+++.||
T Consensus 436 ~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-------------------------------------gi~~~~~h~ 478 (652)
T PRK05298 436 LSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-------------------------------------GIKVRYLHS 478 (652)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-------------------------------------ceeEEEEEC
Confidence 3445555578899999999999999999888643 123788999
Q ss_pred CCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEE
Q 043190 151 GMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
++++.+|..+++.|+.|.+.|+|||+.|++|+|+|.+.+||. +|.+..+ -+..+|+||+|||||. ..|.|+
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG~~~~~~~yiqr~GR~gR~---~~G~~i 551 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARN---VNGKVI 551 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccccCCCHHHHHHHhccccCC---CCCEEE
Confidence 999999999999999999999999999999999999987774 4433222 2455799999999995 479999
Q ss_pred EEeCCc
Q 043190 229 IITSHD 234 (1492)
Q Consensus 229 ~~~~~~ 234 (1492)
++++..
T Consensus 552 ~~~~~~ 557 (652)
T PRK05298 552 LYADKI 557 (652)
T ss_pred EEecCC
Confidence 999853
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=146.59 Aligned_cols=250 Identities=14% Similarity=0.136 Sum_probs=148.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-|||.|... .+++.+..+.. +. .-+..+|+--...--.+-.. ...+.. .+.+.+.+....+.|+|||
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~----vv-~IPtnkp~~r~d~~d~i~~t-~~~K~~----al~~~i~~~~~~g~pvLI~ 446 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME----VI-TIPTNRPVIRKDSPDLLYPT-LDSKFN----AVVKEIKERHAKGQPVLVG 446 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC----EE-EcCCCCCeeeeeCCCeEEcC-HHHHHH----HHHHHHHHHHhCCCCEEEE
Confidence 57789999865 34454444432 33 33455654221110000001 111211 1223333333678999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.++..|.+.. ......||++...++..|-++++.|
T Consensus 447 t~si~~se~ls~~L~~~g-------------------------------------i~~~~Lna~~~~~Ea~ii~~ag~~g 489 (796)
T PRK12906 447 TVAIESSERLSHLLDEAG-------------------------------------IPHAVLNAKNHAKEAEIIMNAGQRG 489 (796)
T ss_pred eCcHHHHHHHHHHHHHCC-------------------------------------CCeeEecCCcHHHHHHHHHhcCCCc
Confidence 999999999998887542 1266889999999999999999988
Q ss_pred CccEEEeccccccccCCC---cEE-----EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc-H--
Q 043190 168 LLKVLVCTATLAWGVNLP---AHT-----VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-L-- 236 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp---~~~-----vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~-- 236 (1492)
. |+|||+.++||.|++ .+. +||....+- +...+.|+.|||||.| ..|.+..+++-+| +
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe-------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~ 558 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE-------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMR 558 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC-------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHH
Confidence 7 999999999999994 667 788522221 2334899999999999 7899999988664 1
Q ss_pred ----HHHHHHh------cCCCccccchhHhHHHHHHHHH------HhCcccCHHHHHHHhhhhhhhhhhccCccccCCCc
Q 043190 237 ----AYYLRLL------TSQLPIESQFISSLKDNLNAEV------ALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGW 300 (1492)
Q Consensus 237 ----~~~~~~~------~~~~~ies~l~~~l~~~l~~ei------~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~ 300 (1492)
+...+++ ....||++.+.....+..-.-+ .....-..++.++.=+...|..|-.-
T Consensus 559 ~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~i--------- 629 (796)
T PRK12906 559 RFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQV--------- 629 (796)
T ss_pred hhCcHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1233333 2356788876554333321111 12223344555555555555444210
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHh
Q 043190 301 DEVIADPSLSLKQRALVTDAARALDKA 327 (1492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~L~~~ 327 (1492)
+..|..+.....++++.+++.+.+.
T Consensus 630 --l~~~~~l~~~i~~~~~~~i~~~i~~ 654 (796)
T PRK12906 630 --INEDKDLKEVLMPMIKRTVDRQVQM 654 (796)
T ss_pred --HcCCccHHHHHHHHHHHHHHHHHHH
Confidence 1111233444455666666655543
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-09 Score=134.56 Aligned_cols=361 Identities=17% Similarity=0.207 Sum_probs=198.5
Q ss_pred CCCHHHHHHHHhhhc---------CCCcEEEecCCCCCchHHHHHHHHHHhccCCC-----ceEEEEcccHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH---------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSD-----MKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~---------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~-----~~~l~i~P~r~La~q~~~~ 753 (1492)
.++|+|.+.+.-+++ ...-.|++-..|+|||+.....|...+++.+. .+.+||+|. .| ...
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sL----v~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SL----VNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HH----HHH
Confidence 489999999987652 12346777788999999988888888888888 899999997 33 456
Q ss_pred HHHHhhhccCC---EEEEEcCCCCcch----------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 754 WKDRLVSQLGK---EMVEMTGDYTPDL----------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 754 ~~~~~~~~~g~---~v~~~~g~~~~~~----------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
|++.|.++.+. ....+.|...... ...-..-|.+.+.|.+....+. .....++++|+||.|.+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCCc
Confidence 77777766542 3333344332200 0111346778888876544443 33568899999999988
Q ss_pred CCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhc---CCcceeEecCCCccccCcEEEEeccCCcccc
Q 043190 821 GAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLG---VGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 821 ~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~---~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 897 (1492)
-+.....+.. +.+++ -.|-|++|+|+-. .++.+++. .-.+++..-....+...-.....+... ...
T Consensus 389 kN~~s~~~ka-L~~l~--------t~rRVLLSGTp~Q-Ndl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~-~~s 457 (776)
T KOG0390|consen 389 KNSDSLTLKA-LSSLK--------TPRRVLLTGTPIQ-NDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDA-DAS 457 (776)
T ss_pred cchhhHHHHH-HHhcC--------CCceEEeeCCccc-ccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCC-Ccc
Confidence 5443322222 22221 3455889999732 34444443 222222211111111100000000000 000
Q ss_pred cc-------ccccChhH--------HHHHhhcCCC-CCeeEEecChHHHHHHHHHHHHH----------------H-hcC
Q 043190 898 PR-------MNSMNKPA--------YAAICTHSPT-KPVLIFVSSRRQTRLTALDLIQF----------------A-ASD 944 (1492)
Q Consensus 898 ~~-------~~~~~~~~--------~~~l~~~~~~-~~~LIF~~s~~~~~~~a~~L~~~----------------~-~~~ 944 (1492)
.. ...+..-. -..+..+-|+ .-.+|||+.-..=..+...|.+. + .-.
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 00 00000000 0111222233 24677887655444444444332 0 000
Q ss_pred CCCcc------------cCC-----------CC---------hHHHHHHHhhc----C---------------cHHHHHH
Q 043190 945 ETPRQ------------FLG-----------MP---------EEDLQMVLSQV----T---------------DQNLRQT 973 (1492)
Q Consensus 945 ~~~~~------------~~~-----------~~---------~~~~~~~~~~~----~---------------~~~l~~~ 973 (1492)
..|.. +.. .. .-.+...+... . -+.+...
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 01100 000 00 00111111111 0 0244455
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCc--e-EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKI--Q-VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~--~-vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~G 1050 (1492)
.++.+..+||.++..+|..+.+.|.+..- . .|.+|-+-+.|+|+-+..-||. ||+ ++.++.=.|.++
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil----~D~------dWNPa~d~QAma 687 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL----FDP------DWNPAVDQQAMA 687 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE----eCC------CCCchhHHHHHH
Confidence 58889999999999999999999986432 4 4556667889999998777776 553 345666689999
Q ss_pred ccCCCCCCCceEEEEEecCC--cHHHHHHh
Q 043190 1051 RAGRPQYDQHGKAVILVHEP--KKSFYKKF 1078 (1492)
Q Consensus 1051 RagR~g~~~~G~~i~l~~~~--~~~~~~~~ 1078 (1492)
||-|.|+-+.-.+|.|.... +...|++-
T Consensus 688 R~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred HhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 99999977777888887654 34444443
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=139.31 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=96.6
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
.+.+|||||+...+.+++-.|.... ..--..||.|.+.+|...
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~-------------------------------------i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLD-------------------------------------IPPLPLHASMIQKQRLKN 505 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcC-------------------------------------CCCchhhHHHHHHHHHHh
Confidence 4779999999999888887765421 112245999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
.+.|++..--||+||+++|||+|+|.+..||+ |..+. +..-|+||.||+.|++ ..|.++.++.+.+...|.
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH----YqVPr---tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHVIH----YQVPR---TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHhcCCCeEEEeehhhhccCCCCCcceEEE----eecCC---ccceeEeccccccccc--CCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999997 54322 3334999999999999 679999999999987776
Q ss_pred HH
Q 043190 241 RL 242 (1492)
Q Consensus 241 ~~ 242 (1492)
++
T Consensus 577 KL 578 (731)
T KOG0347|consen 577 KL 578 (731)
T ss_pred HH
Confidence 64
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=132.84 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=123.9
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceE-eecCCcccccceE-EEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLF-FFDSSYRPIPLAQ-QYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~-~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
+.+...|.+.||||+|+ ++.+|-.+....++. -.+.+.+--+.-+ .+..+.+. .+...+.. ++... ..
T Consensus 191 rl~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a---~K~aaLl~----il~~~-~~ 260 (529)
T KOG0337|consen 191 RLPESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA---EKEAALLS----ILGGR-IK 260 (529)
T ss_pred hCCCcceEEEEeccCch--hhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH---HHHHHHHH----HHhcc-cc
Confidence 34556799999999998 666666554322211 1222222222211 22222211 11111111 11111 22
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
.++++|||.|+..++.+-..+... ..++...++.|++.-|..-
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~-------------------------------------g~~~s~iysslD~~aRk~~ 303 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDF-------------------------------------GGEGSDIYSSLDQEARKIN 303 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhc-------------------------------------CCCccccccccChHhhhhc
Confidence 468999999999998877665542 3346677899999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
...|+.|+-.+||.|+.+|||+|+|-..-||+.+.+-+ +.-|.||+||+.|+| ..|.+|-++..++..+..
T Consensus 304 ~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~-------~klFvhRVgr~arag--rtg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 304 GRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPD-------DKLFVHRVGRVARAG--RTGRAYSLVASTDDPYLL 374 (529)
T ss_pred cccccCCccceEEEehhhhccCCCccccccccccCCCC-------CceEEEEecchhhcc--ccceEEEEEecccchhhh
Confidence 99999999999999999999999999999998333333 334999999999999 789999999888776655
Q ss_pred H
Q 043190 241 R 241 (1492)
Q Consensus 241 ~ 241 (1492)
.
T Consensus 375 D 375 (529)
T KOG0337|consen 375 D 375 (529)
T ss_pred h
Confidence 4
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=137.93 Aligned_cols=179 Identities=20% Similarity=0.296 Sum_probs=122.2
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecC--CcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDS--SYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
.+-++.|||| |=|..+|=-.-...+ +..++. ..| .|+....+.. .. ..-+++.+.+.+.+|+|+
T Consensus 411 ~Ph~LvMTAT-PIPRTLAlt~fgDld--vS~IdElP~GR-kpI~T~~i~~--~~--------~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 411 NPHVLVMTAT-PIPRTLALTAFGDLD--VSIIDELPPGR-KPITTVVIPH--ER--------RPEVYERIREEIAKGRQA 476 (677)
T ss_pred CCcEEEEeCC-CchHHHHHHHhcccc--chhhccCCCCC-CceEEEEecc--cc--------HHHHHHHHHHHHHcCCEE
Confidence 5678999999 677777765544322 222222 223 3554443322 11 122345666667899999
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh-cccEEEEcCCCChhhHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF-GLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
.|-|+-..+.+.+--.-... ....|+..+ ...||..||.|+++++..|.+.
T Consensus 477 Y~VcPLIeESE~l~l~~a~~----------------------------~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~ 528 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEE----------------------------LYEELKSFLPELKVGLVHGRMKPAEKDAVMEA 528 (677)
T ss_pred EEEeccccccccchhhhHHH----------------------------HHHHHHHHcccceeEEEecCCChHHHHHHHHH
Confidence 99999877766332110000 001122222 3459999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|++|+++|||||++.+.|||+|+.++.| ++|++..+. ....|.-||.||.+ ..+.|++++.++.
T Consensus 529 Fk~~e~~ILVaTTVIEVGVdVPnATvMV----Ie~AERFGL--aQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 529 FKEGEIDILVATTVIEVGVDVPNATVMV----IENAERFGL--AQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred HHcCCCcEEEEeeEEEecccCCCCeEEE----EechhhhhH--HHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 9999999999999999999999999887 477766442 23456889999987 6799999998765
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-10 Score=144.81 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEc
Q 043190 70 CYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHH 149 (1492)
Q Consensus 70 ~~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hh 149 (1492)
+.+.+.+.+.+++++||||||++.++.+++.|.+.... ...+..+|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~----------------------------------~~~v~llH 594 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT----------------------------------QVDIDLFH 594 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC----------------------------------CceEEEEe
Confidence 34455566678899999999999999999988753210 11388999
Q ss_pred CCCChhhHHH----HHHHH-hCCC---ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCC
Q 043190 150 AGMLRSDRGL----TERLF-SEGL---LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQF 221 (1492)
Q Consensus 150 agl~~~~R~~----ve~~f-~~g~---i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~ 221 (1492)
|.+++.+|.. +.+.| ++|+ .+|||||.++++|||++. +++|...-+ ..+++||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~-DvlItdlaP---------idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDF-DWLITQLCP---------VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCC-CeEEECCCC---------HHHHHHHHhccCCCCC
Confidence 9999999954 45567 7776 479999999999999975 677753221 1259999999999986
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=141.96 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=120.1
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecC--CcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDS--SYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
.+.++|++||| |..+.+....... -....... ..++.|- ..++...... ....+...+++.+.+.++.++|
T Consensus 128 ~~~~vil~SAT-Psles~~~~~~g~--~~~~~l~~r~~~~~~p~-v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~q 200 (505)
T TIGR00595 128 FNCPVVLGSAT-PSLESYHNAKQKA--YRLLVLTRRVSGRKPPE-VKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQ 200 (505)
T ss_pred cCCCEEEEeCC-CCHHHHHHHhcCC--eEEeechhhhcCCCCCe-EEEEeccccc---ccCCccHHHHHHHHHHHHcCCc
Confidence 46899999999 7887776654332 01111111 1122222 2232222111 1123445566778888899999
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCcc---------------------ccC--CC--Cchh-------hHHHHHHHhh
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLE---------------------VFN--ND--THPQ-------LSLIKKDVMK 131 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~---------------------~~~--~~--~~~~-------~~~~~~~~~~ 131 (1492)
+|||+|+|.-+-.+.=.=+......+..+ .+. .+ .... .+.+
T Consensus 201 vLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~------ 274 (505)
T TIGR00595 201 SILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQV------ 274 (505)
T ss_pred EEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHH------
Confidence 99999998643211000000000000000 000 00 0000 0111
Q ss_pred cCchHHHHHhc-ccEEEEcCCCChhhH--HHHHHHHhCCCccEEEeccccccccCCCcEEEEE--eccce-ecCCCCC--
Q 043190 132 SRNKDLIELFG-LAVGVHHAGMLRSDR--GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVI--KGTQL-YDPKAGG-- 203 (1492)
Q Consensus 132 ~~~~~l~~~~~-~gv~~hhagl~~~~R--~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI--~~~~~-~~~~~~~-- 203 (1492)
.+.|.+.+. ..|...|++++...+ +.+.+.|++|+.+|||+|..+++|+|+|.++.|+ +.+.. +.|+-..
T Consensus 275 --~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E 352 (505)
T TIGR00595 275 --EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAE 352 (505)
T ss_pred --HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHH
Confidence 134444443 468889999988776 8999999999999999999999999999988653 32211 1111000
Q ss_pred cccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 204 WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 204 ~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
..-..+.|++|||||.+ ..|.+++.+...+
T Consensus 353 ~~~~ll~q~~GRagR~~--~~g~viiqt~~p~ 382 (505)
T TIGR00595 353 RGFQLLTQVAGRAGRAE--DPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHhccCCCC--CCCEEEEEeCCCC
Confidence 01123688999999987 6799998876554
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=128.47 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=127.9
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCccc--ccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRP--IPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rp--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
..|+..|.++||||+.+ ...+.+.+..+ |.-+ .+....-| -.|.++++.+.+.+. .. ++|. +.+.--
T Consensus 197 ~LPr~~Q~~LmSATl~dDv~~LKkL~l~n-PviL-kl~e~el~~~dqL~Qy~v~cse~DK---fl----llya-llKL~L 266 (569)
T KOG0346|consen 197 HLPRIYQCFLMSATLSDDVQALKKLFLHN-PVIL-KLTEGELPNPDQLTQYQVKCSEEDK---FL----LLYA-LLKLRL 266 (569)
T ss_pred hCCchhhheeehhhhhhHHHHHHHHhccC-CeEE-EeccccCCCcccceEEEEEeccchh---HH----HHHH-HHHHHH
Confidence 46788999999999986 55566666555 3222 23333333 457666666653321 11 1121 111111
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
-.+.+||||||...|-++--.|...+. .-++.++.||..-|.-
T Consensus 267 I~gKsliFVNtIdr~YrLkLfLeqFGi-------------------------------------ksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 267 IRGKSLIFVNTIDRCYRLKLFLEQFGI-------------------------------------KSCILNSELPANSRCH 309 (569)
T ss_pred hcCceEEEEechhhhHHHHHHHHHhCc-------------------------------------Hhhhhcccccccchhh
Confidence 246799999999999888766644321 2456799999999999
Q ss_pred HHHHHhCCCccEEEecc-----------------------------------ccccccCCCcEEEEEeccceecCCCCCc
Q 043190 160 TERLFSEGLLKVLVCTA-----------------------------------TLAWGVNLPAHTVVIKGTQLYDPKAGGW 204 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~-----------------------------------tla~Gvnlp~~~vVI~~~~~~~~~~~~~ 204 (1492)
|.+.|-.|..++++||+ -.+||||+-.+..|++ ||-+.
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN----FD~P~--- 382 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN----FDFPE--- 382 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee----cCCCC---
Confidence 99999999999999999 2579999999999998 55332
Q ss_pred ccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 205 RDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 205 ~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
+.-+|+||+||+||.+ ..|.++-++.+.+..
T Consensus 383 t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 383 TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 5667999999999998 789999999877643
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=146.58 Aligned_cols=106 Identities=19% Similarity=0.263 Sum_probs=86.9
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+++..+..+++.|.+.. +..++..||||++.+|..+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~------------------------------------Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRERE------------------------------------GIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhcc------------------------------------CeeEEEEECCCCHHHHHHH
Confidence 6789999999999999988875321 2236778999999999999
Q ss_pred HHHHhCC--CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 161 ERLFSEG--LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 161 e~~f~~g--~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.+.|+++ ..+|||||+++++|+|++..+.||+ ||. +|++..|.||+||+||.| ..|.+.+.+
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fDl---P~nP~~~eQRIGR~~RiG--Q~~~V~i~~ 600 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FDL---PFNPDLLEQRIGRLDRIG--QKHDIQIHV 600 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEE----ecC---CCCHHHHHHHhcccccCC--CCceEEEEE
Confidence 9999984 6999999999999999999999997 543 345556999999999999 556554443
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-09 Score=118.14 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC--E
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK--E 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~--~ 765 (1492)
.+-|+|++.+...++.|..+++.-..|-|||+.++ +|....+. ....++++|..-. ..|.+.+..+++. .
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyra--EwplliVcPAsvr-----ftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRA--EWPLLIVCPASVR-----FTWAKALNRFLPSIHP 269 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhh--cCcEEEEecHHHh-----HHHHHHHHHhcccccc
Confidence 47799999999888899999999999999999875 45554443 5778999997432 2344444443321 2
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
+..+.+..+.-........|.|.+++.+..+-.... -..++++|+||.|++.+.+......++.-++ ..
T Consensus 270 i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk-------~a 338 (689)
T KOG1000|consen 270 IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATDLLK-------VA 338 (689)
T ss_pred eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhhHHH-------Hh
Confidence 333333322211112245788999987754333211 2358899999999996654444444444333 24
Q ss_pred eEEEEEcCCCC
Q 043190 846 VRFIGLSTALA 856 (1492)
Q Consensus 846 ~~ii~lSATl~ 856 (1492)
.++|++|.|+.
T Consensus 339 khvILLSGTPa 349 (689)
T KOG1000|consen 339 KHVILLSGTPA 349 (689)
T ss_pred hheEEecCCcc
Confidence 57899999974
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-10 Score=124.70 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=92.1
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
-.++||||.|+.+|..+-+.+.+.... .+.+...|++.-|.+|+.-
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHH
Confidence 458999999999999998888765321 2236678999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.+.|+.+.++.|+||+++|||+|+-..-++|+-|-+-|. ..|.||+||.||+. +-|.||-++..
T Consensus 551 le~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k-------~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 551 LESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDK-------TNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred HHhhhhcCeEEEEEehhhhccccccCCceEEEEecCccc-------chhhhhhhccchhh--hcceeEEEeec
Confidence 999999999999999999999999999999987665332 23999999999987 66999877643
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-10 Score=140.01 Aligned_cols=99 Identities=25% Similarity=0.261 Sum_probs=71.1
Q ss_pred HHHHHhc-ccEEEEcCCCC--hhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEE--eccceec-CCCCC--cccC
Q 043190 136 DLIELFG-LAVGVHHAGML--RSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVI--KGTQLYD-PKAGG--WRDL 207 (1492)
Q Consensus 136 ~l~~~~~-~gv~~hhagl~--~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI--~~~~~~~-~~~~~--~~~~ 207 (1492)
.|.+.+. ..|...|+++. +++|+.+.+.|++|+.+|||+|..+++|+|+|.+++|+ +....-+ |+-+. -.-.
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~ 524 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQ 524 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHH
Confidence 3444443 46888899987 46799999999999999999999999999999998664 2111111 10000 0112
Q ss_pred chhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 208 GMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 208 ~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
.+.|++|||||.+ ..|.+++.+...+-
T Consensus 525 ~l~q~~GRagR~~--~~g~viiqT~~p~~ 551 (679)
T PRK05580 525 LLTQVAGRAGRAE--KPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHHhhccCCC--CCCEEEEEeCCCCC
Confidence 3788999999987 67999999876553
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=9e-10 Score=137.18 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=109.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... ..+|.+..+. +++ .-+..||+--...--.+-.. ...+... +.+.+.+....+.|+|||
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L----~Vv-~IPTnrP~~R~D~~d~vy~t-~~eK~~A----li~~I~~~~~~grpVLIf 604 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKL----DVV-VIPTNKPIVRKDMDDLVYKT-RREKYNA----IVLKVEELQKKGQPVLVG 604 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCC----cEE-ECCCCCCcceecCCCeEecC-HHHHHHH----HHHHHHHHhhCCCCEEEE
Confidence 46688888754 4444444433 233 33456664332210000011 1112111 223333333678999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.+++.|..... ...+.|| .+.+|+....+|+.+
T Consensus 605 t~Sve~sE~Ls~~L~~~gI-------------------------------------~h~vLna--kq~~REa~Iia~AG~ 645 (1025)
T PRK12900 605 TASVEVSETLSRMLRAKRI-------------------------------------AHNVLNA--KQHDREAEIVAEAGQ 645 (1025)
T ss_pred eCcHHHHHHHHHHHHHcCC-------------------------------------CceeecC--CHHHhHHHHHHhcCC
Confidence 9999999999988875421 1456676 588999999999999
Q ss_pred CccEEEeccccccccCCCcEE--------EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 LLKVLVCTATLAWGVNLPAHT--------VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~~~--------vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
...|+|||+.++||+|++-.. +||....+. +..-+.|+.|||||.| ..|.++.+++.++
T Consensus 646 ~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhe-------s~Rid~Ql~GRtGRqG--dpGsS~ffvSleD 712 (1025)
T PRK12900 646 KGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHE-------SRRIDRQLRGRAGRQG--DPGESVFYVSLED 712 (1025)
T ss_pred CCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCc-------hHHHHHHHhhhhhcCC--CCcceEEEechhH
Confidence 999999999999999998322 234211111 2233899999999999 8899999998755
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-10 Score=135.75 Aligned_cols=120 Identities=23% Similarity=0.423 Sum_probs=93.1
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+..++||||.+|..+..+-+.|.+...-.-....| ++.|-+---.||++.++..
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~f--------------------------iGq~~s~~~~gmtqk~Q~e 465 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIF--------------------------IGQGKSTQSTGMTQKEQKE 465 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhccccccee--------------------------eeccccccccccCHHHHHH
Confidence 34679999999999999888887522111111122 2223333347999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
+.+.|++|.++||||||+++.|+|+|..++||. ||... +++..+||.|| ||+ +.|+++++++..+.
T Consensus 466 vl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd~~s---npIrmIQrrGR-gRa---~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 466 VLDKFRDGEINVLVATSVAEEGLDIGECNLVIC----YDYSS---NPIRMVQRRGR-GRA---RNSKCVLLTTGSEV 531 (746)
T ss_pred HHHHHhCCCccEEEEecchhccCCcccccEEEE----ecCCc---cHHHHHHHhcc-ccc---cCCeEEEEEcchhH
Confidence 999999999999999999999999999999997 88654 46778899999 997 57999999985443
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-09 Score=130.49 Aligned_cols=125 Identities=19% Similarity=0.134 Sum_probs=81.4
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
++++|.-.--.+ +. --|..+.||-|||+++.+|+.-.... |..+-+++..--||..=++.+.. +-.++|++|++
T Consensus 170 ~yDVQliGgivL-h~--G~IAEM~TGEGKTLvAtlp~yLnAL~--GkgVHvVTVNDYLA~RDaewmgp-ly~fLGLsvg~ 243 (1112)
T PRK12901 170 HYDVQLIGGVVL-HQ--GKIAEMATGEGKTLVATLPVYLNALT--GNGVHVVTVNDYLAKRDSEWMGP-LYEFHGLSVDC 243 (1112)
T ss_pred ccchHHhhhhhh-cC--CceeeecCCCCchhHHHHHHHHHHHc--CCCcEEEEechhhhhccHHHHHH-HHHHhCCceee
Confidence 455664433333 23 34789999999999999998765554 55666667777777655554443 44556999998
Q ss_pred EcC-CCCcc-hhccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEecccc
Q 043190 769 MTG-DYTPD-LMALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 769 ~~g-~~~~~-~~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~ 819 (1492)
... +.... .+..-.+||.++|..-| +.|-.+.. .....+.+.+.||||+|.
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 865 33333 33445789999998774 33332221 123446688999999994
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=134.17 Aligned_cols=319 Identities=20% Similarity=0.253 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHH---HHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 687 SHFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAEL---AMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l---~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
.+++.+|.+.++-++ ..++|+|+.-.-|-|||+.-.- .++.... -.+..|+++|.-.+. .|.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~--~~gpflvvvplst~~-----~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ--IHGPFLVVVPLSTIT-----AWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh--ccCCeEEEeehhhhH-----HHHHHHHH
Confidence 568999999776443 2678999999999999975433 3333322 257789999986644 47777777
Q ss_pred ccCCEEEEEcCCCCcch------------hccCCCcEEEECchhhhHhhhcccCccccCc--ccEEEEecccccCCCCcc
Q 043190 761 QLGKEMVEMTGDYTPDL------------MALLSADIIISTPEKWDGISRNWHSRNYVKK--VGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~------------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~--i~liViDEaH~l~~~~g~ 826 (1492)
+...++.+++|+..... ....+.+++++|.|.+. . ....|+. ..+++|||||.|...-..
T Consensus 442 w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L---k---Dk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 442 WTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL---K---DKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHh---c---cHhhhccCCcceeeecHHhhcCchHHH
Confidence 77889999999764321 11125799999999642 2 2223443 468999999999644333
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCC-CC-hHHHHHHhcCCcceeEecCC----C---------------ccccCc-
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTAL-AN-AGDLADWLGVGEIGLFNFKP----S---------------VRPVPL- 884 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl-~~-~~~~~~~l~~~~~~~~~~~~----~---------------~r~~~l- 884 (1492)
.++. +..++ ..-| ++++.|+ .| .+++...++...+.-|.... . .+|.-+
T Consensus 516 l~~~-l~~f~-------~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lR 586 (1373)
T KOG0384|consen 516 LYES-LNQFK-------MNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLR 586 (1373)
T ss_pred HHHH-HHHhc-------ccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHH
Confidence 3443 22222 2334 5666665 32 56666555432221111000 0 000000
Q ss_pred ------EEEEeccCCccccccccccChhHHHHHhh---------------------------------------------
Q 043190 885 ------EVHIQGYPGKFYCPRMNSMNKPAYAAICT--------------------------------------------- 913 (1492)
Q Consensus 885 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------- 913 (1492)
+..+..-........+..+.+.-|..|..
T Consensus 587 r~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~ 666 (1373)
T KOG0384|consen 587 RLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDF 666 (1373)
T ss_pred HHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhh
Confidence 00000000000000011111111111110
Q ss_pred -----------------------------cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhh
Q 043190 914 -----------------------------HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQ 964 (1492)
Q Consensus 914 -----------------------------~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1492)
...+.+||||..-.+...-++.+|
T Consensus 667 ~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL--------------------------- 719 (1373)
T KOG0384|consen 667 RDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYL--------------------------- 719 (1373)
T ss_pred hhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHH---------------------------
Confidence 122345555544333333333333
Q ss_pred cCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc---CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN---NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 965 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~---g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
..-++..--+-|+...+-|+..++.|.. ...-.|+||.+.+-|||+-..+.||. || .|..
T Consensus 720 -------~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII----FD------SDWN 782 (1373)
T KOG0384|consen 720 -------SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII----FD------SDWN 782 (1373)
T ss_pred -------HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE----eC------CCCC
Confidence 2225566677899999999999999975 35668999999999999997766665 45 2334
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1042 ITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+..=+|...||.|-|..+.-.+|.|++.+.
T Consensus 783 PQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 783 PQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 455579999999999888889999998765
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-09 Score=131.35 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=123.6
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
+...++-++-|||| |=|..+---+..-.+-.+.. .+..+..|+..++.... ...+.+.+...+..|+
T Consensus 738 ~Lr~~VDvLTLSAT-PIPRTL~Msm~GiRdlSvI~-TPP~~R~pV~T~V~~~d-----------~~~ireAI~REl~RgG 804 (1139)
T COG1197 738 ELRANVDVLTLSAT-PIPRTLNMSLSGIRDLSVIA-TPPEDRLPVKTFVSEYD-----------DLLIREAILRELLRGG 804 (1139)
T ss_pred HHhccCcEEEeeCC-CCcchHHHHHhcchhhhhcc-CCCCCCcceEEEEecCC-----------hHHHHHHHHHHHhcCC
Confidence 45678889999999 55555433332211111111 12223345544332222 2234456666678899
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|+-.-+|.-++.++.+..|.+..++ ..|++-||-|+..+=+.|..
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPE-----------------------------------arI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPE-----------------------------------ARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCc-----------------------------------eEEEEeecCCCHHHHHHHHH
Confidence 9988888889999999999877543 23999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.|-+|+..|||||++.+.|||+|..+.+| +.+++..+ -....|+-||.||.. ..|+|++++.+.+
T Consensus 850 ~F~~g~~dVLv~TTIIEtGIDIPnANTiI----Ie~AD~fG--LsQLyQLRGRVGRS~--~~AYAYfl~p~~k 914 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIETGIDIPNANTII----IERADKFG--LAQLYQLRGRVGRSN--KQAYAYFLYPPQK 914 (1139)
T ss_pred HHHcCCCCEEEEeeeeecCcCCCCCceEE----Eecccccc--HHHHHHhccccCCcc--ceEEEEEeecCcc
Confidence 99999999999999999999999765544 13332222 223577999999987 7899999998654
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=123.39 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=132.1
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEee---CCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGIS---EPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..++|++-.|||+-++-...+-+..- .++-.+..+..|..-...++.-+ +....++...+.+.. ..+.+.+..+
T Consensus 449 ~~~~~~~~~~~~~K~~~~~~~~~~~~--~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s-~~~~~~i~~~ 525 (1034)
T KOG4150|consen 449 SINMGVYDGDTPYKDRTRLRSELANL--SELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVS-HLFAEMVQHG 525 (1034)
T ss_pred hcCcceEeCCCCcCCHHHHHHHhcCC--cceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHH-HHHHHHHHcC
Confidence 35789999999998866555444332 23445666777766654444433 222233333333332 2455666788
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
-.+|-||.+|+-|+.+....++...+.+ +.|.+ .|.-+.||.+.++|+.||
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~-------------------------~~LV~----~i~SYRGGY~A~DRRKIE 576 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETA-------------------------PHLVE----AITSYRGGYIAEDRRKIE 576 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhh-------------------------HHHHH----HHHhhcCccchhhHHHHH
Confidence 8999999999999988766655443311 11111 245678999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+-.|++.-++||+.|+.|||+...+.|+.--. +++...+.|.+|||||... ...++.++...-.+
T Consensus 577 ~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF-------P~S~aNl~QQ~GRAGRRNk--~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 577 SDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF-------PGSIANLWQQAGRAGRRNK--PSLAVYVAFLGPVD 643 (1034)
T ss_pred HHhhCCeeeEEEecchhhhccccccceeEEEccC-------chhHHHHHHHhccccccCC--CceEEEEEeccchh
Confidence 9999999999999999999999999999986333 3355568999999999984 46666665544443
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=101.75 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=80.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHH-HhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLH-LFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~-~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
.++-.++-..+|+|||.-.+--+++ .+.+ +.++|++.|||.++.++.+.++ |..+..-+.-... ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~--~~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMR--THFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeec--cccC
Confidence 4667789999999999966555554 4443 8999999999999998877653 2233332222211 2234
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+.-|-++|...+...+.+ .....++++||+||+|..+.. --.....++.... ....++|.||||+|-
T Consensus 72 ~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~----sIA~rg~l~~~~~--~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPT----SIAARGYLRELAE--SGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHH----HHHHHHHHHHHHH--TTS-EEEEEESS-TT
T ss_pred CCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHH----HHhhheeHHHhhh--ccCeeEEEEeCCCCC
Confidence 567888998877665544 233679999999999976421 1122333333332 235789999999875
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=134.71 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||.+...+..+++.| |+.+.||++++.+|..
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L------------------------------------------~~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQQERMQ 532 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc------------------------------------------CCceEECCCCHHHHHH
Confidence 6789999999988776666543 2456799999999999
Q ss_pred HHHHHhCC-CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE-------EEEe
Q 043190 160 TERLFSEG-LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG-------IIIT 231 (1492)
Q Consensus 160 ve~~f~~g-~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~-------i~~~ 231 (1492)
+.+.|++| .+++||+|..+..|||+|..++||. +++..+ +...+.||+||++|++.+ |.+ |.++
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g--S~~q~iQRlGRilR~~~~--~~~~~~~A~fY~lV 604 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG--SRRQEAQRLGRILRAKKG--SDAEEYNAFFYSLV 604 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC--CHHHHHHHhcccccCCCC--CccccccceEEEEe
Confidence 99999975 8899999999999999999999995 443211 455699999999999843 443 7777
Q ss_pred CCccHHHHH
Q 043190 232 SHDKLAYYL 240 (1492)
Q Consensus 232 ~~~~~~~~~ 240 (1492)
+.+..+.+.
T Consensus 605 s~dT~E~~~ 613 (732)
T TIGR00603 605 SKDTQEMYY 613 (732)
T ss_pred cCCchHHHH
Confidence 776655443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=118.32 Aligned_cols=167 Identities=12% Similarity=0.148 Sum_probs=143.5
Q ss_pred cchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 043190 353 IQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKHGKISILIQLYISRGW 432 (1492)
Q Consensus 353 i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~ 432 (1492)
|.+.||.+|.+.+....+.+++|.+++.|+||..+. | +.+..-...||++||+|..
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~-----------------p-------k~pk~~~ekll~dhlnr~~ 282 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN-----------------P-------KGPKCTLEKLLGDHLNRAR 282 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC-----------------C-------CCCchhHHHHHHHHHhHhh
Confidence 678899999999998899999999999999996552 1 1223335678999999987
Q ss_pred CCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCC-cccccccccCCHHHHHHHHHcCC-
Q 043190 433 IDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQ-HPLRQFDKELPAEILRKLEERGA- 510 (1492)
Q Consensus 433 ~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~-~~L~Ql~~~i~~~~~~~l~~~~~- 510 (1492)
-..++ ..+|..++.-++.|+++|+..++++..+.+.+...|||.|++.-+. -+++|+| +...+.++.+.-+.|
T Consensus 283 s~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp-~~d~E~~~~~s~r~I~ 357 (610)
T COG5407 283 SVEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLP-RSDVEYAQRVSLRLIE 357 (610)
T ss_pred cccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhccc-chhHHHHHHhhhhhhh
Confidence 65554 6789999999999999999999999999999999999999998774 6999999 889888888877778
Q ss_pred ChhHHhhCCHHHHHHHhc--CCchHHHHHHHhccCCceeE
Q 043190 511 DLDRLQEMEEKDIGALIR--YTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 511 ~~~~l~~~~~~~~~~l~~--~~~~~~~i~~~~~~~P~~~i 548 (1492)
++.++..+.+++.++.++ .....+++.+.++++|++.+
T Consensus 358 ~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 358 GMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 899999999999999998 45678899999999999987
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=99.81 Aligned_cols=72 Identities=35% Similarity=0.583 Sum_probs=64.7
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
+..+..+||+++.++|..+++.|.+|...|||+|+++++|+|+|.+..||. ++ .+++..+|.|++||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~------~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YD------LPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eC------CCCCHHHHHHhhccccc
Confidence 678999999999999999999999999999999999999999998888875 33 24478999999999999
Q ss_pred CC
Q 043190 1055 PQ 1056 (1492)
Q Consensus 1055 ~g 1056 (1492)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=148.29 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=106.7
Q ss_pred CCccc-EEEEcccCCChHHHHHhcCCCCCCceEeecCCcccc--cceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 5 QRMIR-IVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPI--PLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 5 ~~~~r-iv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
++..| .+.+|||.+.-.+...++... -+ |.++.. ++. .+.+.|+... ...+ ..+. .+++. .+
T Consensus 266 ~~~~~~ll~~SAT~~~r~~~~~l~~~~--l~-f~v~~~-~~~lr~i~~~yi~~~---~~~k-~~L~-----~ll~~--~g 330 (1638)
T PRK14701 266 GNKIGCLIVASATGKAKGDRVKLYREL--LG-FEVGSG-RSALRNIVDVYLNPE---KIIK-EHVR-----ELLKK--LG 330 (1638)
T ss_pred CCCccEEEEEecCCCchhHHHHHhhcC--eE-EEecCC-CCCCCCcEEEEEECC---HHHH-HHHH-----HHHHh--CC
Confidence 34455 577999998655666666422 11 222222 221 1323332221 1111 1111 11222 25
Q ss_pred CcEEEEEechHHH---HHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 82 HQAMVFVHSRKDT---VKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 82 ~~~lVF~~sr~~~---~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.++||||+|++.+ +.+|+.|.+. +..++..||+ |.
T Consensus 331 ~~gIVF~~t~~~~e~ae~la~~L~~~-------------------------------------Gi~a~~~h~~-----R~ 368 (1638)
T PRK14701 331 KGGLIFVPIDEGAEKAEEIEKYLLED-------------------------------------GFKIELVSAK-----NK 368 (1638)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHC-------------------------------------CCeEEEecch-----HH
Confidence 6899999999875 6777777643 2237788886 89
Q ss_pred HHHHHHhCCCccEEEec----cccccccCCCc-EEEEEeccceecCCCCCcccC-------------chhhhhhccCCCC
Q 043190 159 LTERLFSEGLLKVLVCT----ATLAWGVNLPA-HTVVIKGTQLYDPKAGGWRDL-------------GMLDIFGRAGRPQ 220 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT----~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~~~~-------------~~~~~~GRAGR~~ 220 (1492)
.+.+.|++|+++||||| ++++||||+|+ ++.||+ |+.+...++.. ..+++.|||||.|
T Consensus 369 ~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~----~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 369 KGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF----YGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred HHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE----eCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 99999999999999999 48999999998 888886 55444222211 1234779999999
Q ss_pred CCccceEEEEeCCccHHHHHHHhcC
Q 043190 221 FDRSGEGIIITSHDKLAYYLRLLTS 245 (1492)
Q Consensus 221 ~d~~G~~i~~~~~~~~~~~~~~~~~ 245 (1492)
. .+.++......+.....+++..
T Consensus 445 ~--~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 445 I--PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred C--cchhHHHhHHHHHHHHHHHhcc
Confidence 4 4555533333444444444443
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-10 Score=101.72 Aligned_cols=72 Identities=35% Similarity=0.595 Sum_probs=61.5
Q ss_pred cccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCC
Q 043190 142 GLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 142 ~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~ 220 (1492)
..++..+||++++++|..+.+.|++|..+||++|++++.|+|+|..+.||. +++ +++...+.||+||+||.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~---~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDL---PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCC---CCCHHHHHHhhcccccCC
Confidence 456899999999999999999999999999999999999999996665553 333 345667999999999975
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-07 Score=113.83 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=83.9
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++|+|..++.....+-..|.. .-++...-+.|..+...|....
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~---------------------------------~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRR---------------------------------AKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHh---------------------------------cCCceEEEecCCCccchhhHHH
Confidence 5667899998888765544333321 2256777889999999999999
Q ss_pred HHHhcCCc--eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANNKI--QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g~~--~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|.+++. -.|++|.+.+-|+|+-..+-||. |||.- .++.=.|..-||-|.|..+.-.+|.|.+...
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII----fDPdW------NPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVII----FDPDW------NPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEE----ECCCC------CCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99998764 36778999999999997766665 55432 2333468888999988777788888887664
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=126.15 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=84.9
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. ++ .-+..||+--..+--.+-.. ...+.. .+.+.+.+....|.|+|||
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~----Vv-~IPtnkp~~R~d~~d~v~~t-~~~k~~----av~~~i~~~~~~g~PVLVg 450 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLE----VV-VIPTNRSMIRKDEADLVYLT-QADKFQ----AIIEDVRECGVRKQPVLVG 450 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCC----EE-ECCCCCCcceecCCCeEEcC-HHHHHH----HHHHHHHHHHhCCCCEEEE
Confidence 56788888754 44455555433 33 33456664332211001111 111111 1223344445789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|...++.+++.|.+.. ....+.||.+...+|..|.++|+.|
T Consensus 451 t~Sie~sE~ls~~L~~~g-------------------------------------i~h~vLnak~~q~Ea~iia~Ag~~G 493 (896)
T PRK13104 451 TVSIEASEFLSQLLKKEN-------------------------------------IKHQVLNAKFHEKEAQIIAEAGRPG 493 (896)
T ss_pred eCcHHHHHHHHHHHHHcC-------------------------------------CCeEeecCCCChHHHHHHHhCCCCC
Confidence 999999999998887542 1267789999999999999999999
Q ss_pred CccEEEeccccccccCC
Q 043190 168 LLKVLVCTATLAWGVNL 184 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnl 184 (1492)
. |+|||+.++||+|+
T Consensus 494 ~--VtIATNmAGRGtDI 508 (896)
T PRK13104 494 A--VTIATNMAGRGTDI 508 (896)
T ss_pred c--EEEeccCccCCcce
Confidence 4 99999999999997
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=138.97 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=90.5
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.++.++||||++++.|+.+++.|...... ...+. +.+-..-|+||++.+|.
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~---~~~~~--------------------------g~~~~~~~~~~~~~~r~ 413 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIK---AVRFV--------------------------GQASKDGDKGMSQKEQI 413 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCc---eEEEE--------------------------ccccccccCCCCHHHHH
Confidence 45789999999999999998888432110 00000 00000014679999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
.+.+.|++|..+|||||+.+++|+|+|..++||. ||+. ++...++||+||+||.| .|.+++++..+..
T Consensus 414 ~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~----yd~~---~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ 481 (773)
T PRK13766 414 EILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF----YEPV---PSEIRSIQRKGRTGRQE---EGRVVVLIAKGTR 481 (773)
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----eCCC---CCHHHHHHHhcccCcCC---CCEEEEEEeCCCh
Confidence 9999999999999999999999999999999996 7763 46677999999999986 4888888766543
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-07 Score=115.00 Aligned_cols=305 Identities=13% Similarity=0.139 Sum_probs=163.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
.....+|-||.|||||.+..-++-..+. .++.++++++-+++|+.+.+.+++... ..|... . .+.....-....
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~--l~gFv~-Y--~d~~~~~i~~~~ 121 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAG--LSGFVN-Y--LDSDDYIIDGRP 121 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcC--CCccee-e--eccccccccccc
Confidence 4457789999999999987665555443 358999999999999999888876521 002111 1 111111011113
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-Ccc---HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGP---ILEVIVSRMRYISSQTERAVRFIGLSTALAN- 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~---~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~- 857 (1492)
.+-+++..+++..+. ...+.++++|||||+-..... +.+ ..+.+...+..+. ....++|+|-|++.+
T Consensus 122 ~~rLivqIdSL~R~~-----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLD-----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLNDQ 193 (824)
T ss_pred cCeEEEEehhhhhcc-----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCCHH
Confidence 456666666553322 234778999999999733111 111 2233344444333 346789999999976
Q ss_pred -hHHHHHHhcCCcceeEecC-----CCccccCcEEEE--------eccCCccccc-------------cccccChhH-HH
Q 043190 858 -AGDLADWLGVGEIGLFNFK-----PSVRPVPLEVHI--------QGYPGKFYCP-------------RMNSMNKPA-YA 909 (1492)
Q Consensus 858 -~~~~~~~l~~~~~~~~~~~-----~~~r~~~l~~~~--------~~~~~~~~~~-------------~~~~~~~~~-~~ 909 (1492)
.+.++..-+.....++.-. ...|...+-..+ ...++..... ......... +.
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 3444443333332222110 011111000000 0000000000 000000111 12
Q ss_pred HH-hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 910 AI-CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 910 ~l-~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
.+ .....++++-||++|...++.+++.... ....|..++|.-+..
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~----------------------------------~~~~Vl~l~s~~~~~ 319 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCAR----------------------------------FTKKVLVLNSTDKLE 319 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHh----------------------------------cCCeEEEEcCCCCcc
Confidence 22 2235677888999888877766643321 245677777765555
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEE--EEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLV--IIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~--VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
.++. =++.+|++=|+++..|+++....+ +.. +..+.. ..-+..+..||+||+.... ..+.++.
T Consensus 320 ---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~---yvk~~~---~gpd~~s~~Q~lgRvR~l~---~~ei~v~ 384 (824)
T PF02399_consen 320 ---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFA---YVKPMS---YGPDMVSVYQMLGRVRSLL---DNEIYVY 384 (824)
T ss_pred ---cccc---ccceeEEEEeceEEEEeccchhhceEEEE---EecCCC---CCCcHHHHHHHHHHHHhhc---cCeEEEE
Confidence 3322 356899999999999999975321 221 111111 1123668999999998874 5566666
Q ss_pred ecCC
Q 043190 1067 VHEP 1070 (1492)
Q Consensus 1067 ~~~~ 1070 (1492)
++..
T Consensus 385 ~d~~ 388 (824)
T PF02399_consen 385 IDAS 388 (824)
T ss_pred Eecc
Confidence 6543
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=122.50 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=118.5
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... ..+|.+..+.. ++ .-+..||+--..+--.+-.. ...+. + .+.+.+.+....|.|+|||
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~----Vv-~IPTnkp~~R~d~~d~iy~t-~~~K~---~-Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLD----TV-VVPTNRPMVRKDMADLVYLT-ADEKY---Q-AIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCC----EE-ECCCCCCccceeCCCcEEeC-HHHHH---H-HHHHHHHHHHHcCCCEEEE
Confidence 56789999865 33444444433 33 33456664332211000011 11111 1 1223444455789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|...++.+++.|.+.. ....++||.++..+|..|.++|+.|
T Consensus 456 t~sv~~se~ls~~L~~~g-------------------------------------i~~~vLnak~~~~Ea~ii~~Ag~~G 498 (908)
T PRK13107 456 TVSIEQSELLARLMVKEK-------------------------------------IPHEVLNAKFHEREAEIVAQAGRTG 498 (908)
T ss_pred eCcHHHHHHHHHHHHHCC-------------------------------------CCeEeccCcccHHHHHHHHhCCCCC
Confidence 999999999998876531 1256789999999999999999999
Q ss_pred CccEEEeccccccccCCCc-------------------------------------EEEEEeccceecCCCCCcccCchh
Q 043190 168 LLKVLVCTATLAWGVNLPA-------------------------------------HTVVIKGTQLYDPKAGGWRDLGML 210 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~-------------------------------------~~vVI~~~~~~~~~~~~~~~~~~~ 210 (1492)
. |+|||+.++||.|+-- =..|| ||.+.+... ==.
T Consensus 499 ~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gTerheSrR------ID~ 569 (908)
T PRK13107 499 A--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL-GTERHESRR------IDN 569 (908)
T ss_pred c--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE-ecccCchHH------HHh
Confidence 9 9999999999999831 12333 333322111 024
Q ss_pred hhhhccCCCCCCccceEEEEeCCcc-H---------HHHHHHh--cCCCccccchhHhHHH
Q 043190 211 DIFGRAGRPQFDRSGEGIIITSHDK-L---------AYYLRLL--TSQLPIESQFISSLKD 259 (1492)
Q Consensus 211 ~~~GRAGR~~~d~~G~~i~~~~~~~-~---------~~~~~~~--~~~~~ies~l~~~l~~ 259 (1492)
|..|||||-| ..|.+..+.+-+| + ..+.+.+ .+..+|++.+.....+
T Consensus 570 QLrGRaGRQG--DPGss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e~~~i~~~~~~~~i~ 628 (908)
T PRK13107 570 QLRGRAGRQG--DAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIE 628 (908)
T ss_pred hhhcccccCC--CCCceeEEEEeCcHHHHHhChHHHHHHHHHcCCCCCCccccHHHHHHHH
Confidence 5789999988 6788887776544 1 2222222 2345777776654333
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-08 Score=113.92 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhh
Q 043190 972 QTLQFGIGLHHAGLNDKDRSLVEELFANNK--IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMM 1049 (1492)
Q Consensus 972 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~ 1049 (1492)
..++++..-+-|...-.+|+.+++.|...+ .-.|.+|-+.+.|||+-..++||. ||- ++.+-+=.|.-
T Consensus 798 ~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi----hD~------dFNP~dD~QAE 867 (941)
T KOG0389|consen 798 DTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII----HDI------DFNPYDDKQAE 867 (941)
T ss_pred HhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE----eec------CCCCcccchhH
Confidence 445556666788999999999999997654 346789999999999999988886 332 22223336778
Q ss_pred cccCCCCCCCceEEEEEecCCcHH-HHHHhhcCCCceeeccc
Q 043190 1050 GRAGRPQYDQHGKAVILVHEPKKS-FYKKFLYEPFPVESSLR 1090 (1492)
Q Consensus 1050 GRagR~g~~~~G~~i~l~~~~~~~-~~~~~l~~~~pies~l~ 1090 (1492)
-||.|.|..++-.++.|++.+..+ .+.++-+..+.+|+.+.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 888888888899999999877643 34444455555555544
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-08 Score=121.45 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=106.7
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||.|... .++|.+..+.. +.. -+..+|+-....--.+.. ....+... +...+.+....+.|+|||
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~----vv~-IPtnkp~~r~d~~d~i~~-t~~~K~~a----I~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLD----VVV-IPTNRPMIRIDHPDLIYK-TEKEKFDA----VVEDIKERHKKGQPVLVG 436 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCC----EEE-cCCCCCeeeeeCCCeEEE-CHHHHHHH----HHHHHHHHHhcCCCEEEE
Confidence 57799999865 44455555443 333 344555433221000111 11112221 122333333678899999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.+++.|.+.. ......||. +.+|+....+|+.|
T Consensus 437 t~Si~~se~Ls~~L~~~g-------------------------------------i~~~vLnak--q~eREa~Iia~Ag~ 477 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAG-------------------------------------IPHNVLNAK--NHEREAEIIAQAGR 477 (830)
T ss_pred eCcHHHHHHHHHHHHHCC-------------------------------------CceEeccCc--hHHHHHHHHHhcCC
Confidence 999999999999887531 125667885 88999999999999
Q ss_pred CccEEEeccccccccCCCcE--------------------------------------EEEEeccceecCCCCCcccCch
Q 043190 168 LLKVLVCTATLAWGVNLPAH--------------------------------------TVVIKGTQLYDPKAGGWRDLGM 209 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~~--------------------------------------~vVI~~~~~~~~~~~~~~~~~~ 209 (1492)
...|+|||+.++||+|++-- ..|| ||.+.+... =-
T Consensus 478 ~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi-gTerhesrR------id 550 (830)
T PRK12904 478 PGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI-GTERHESRR------ID 550 (830)
T ss_pred CceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE-ecccCchHH------HH
Confidence 99999999999999998542 1222 232222111 02
Q ss_pred hhhhhccCCCCCCccceEEEEeCCcc
Q 043190 210 LDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 210 ~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.|..|||||-| ..|.+-.+.+-+|
T Consensus 551 ~QlrGRagRQG--dpGss~f~lSleD 574 (830)
T PRK12904 551 NQLRGRSGRQG--DPGSSRFYLSLED 574 (830)
T ss_pred HHhhcccccCC--CCCceeEEEEcCc
Confidence 45789999988 6788887776544
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=113.76 Aligned_cols=170 Identities=20% Similarity=0.289 Sum_probs=123.0
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
...|+|++|||-++++ +..-=+ . ++..--||.-|-.-.+.+.+.. ..+.++ +..+.+.+..+..+|
T Consensus 385 ~~~q~i~VSATPg~~E-~e~s~~-----~--vveQiIRPTGLlDP~ievRp~~-----~QvdDL-~~EI~~r~~~~eRvL 450 (663)
T COG0556 385 KIPQTIYVSATPGDYE-LEQSGG-----N--VVEQIIRPTGLLDPEIEVRPTK-----GQVDDL-LSEIRKRVAKNERVL 450 (663)
T ss_pred hcCCEEEEECCCChHH-HHhccC-----c--eeEEeecCCCCCCCceeeecCC-----CcHHHH-HHHHHHHHhcCCeEE
Confidence 3569999999965533 222111 1 1233345554432222222211 122332 345556667889999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|-+-|++.+|.++.+|.+.. -.+.|.|+++..-+|..+.+..|
T Consensus 451 VTtLTKkmAEdLT~Yl~e~g-------------------------------------ikv~YlHSdidTlER~eIirdLR 493 (663)
T COG0556 451 VTTLTKKMAEDLTEYLKELG-------------------------------------IKVRYLHSDIDTLERVEIIRDLR 493 (663)
T ss_pred EEeehHHHHHHHHHHHHhcC-------------------------------------ceEEeeeccchHHHHHHHHHHHh
Confidence 99999999999999987653 23899999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.|...|||--+.|-.|+|+|-+..|- ..|+++.+ -+..|.+|-+|||.|. ..|.+|+..+.
T Consensus 494 ~G~~DvLVGINLLREGLDiPEVsLVA----IlDADKeGFLRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 494 LGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred cCCccEEEeehhhhccCCCcceeEEE----EeecCccccccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998775 36665544 3677899999999996 47999988764
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=134.84 Aligned_cols=91 Identities=29% Similarity=0.376 Sum_probs=70.7
Q ss_pred CCcEEEEEechHH---HHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 81 GHQAMVFVHSRKD---TVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 81 ~~~~lVF~~sr~~---~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+.++||||+|++. ++.+++.|.+. +..++..||+| .|
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~-------------------------------------gi~v~~~hg~l---~~ 367 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDL-------------------------------------GINAELAISGF---ER 367 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHC-------------------------------------CCcEEEEeCcH---HH
Confidence 4689999999888 88888877653 22378899999 23
Q ss_pred HHHHHHHhCCCccEEEe----ccccccccCCCc-EEEEEeccceecCCCCCc---ccCchhhhhhccC
Q 043190 158 GLTERLFSEGLLKVLVC----TATLAWGVNLPA-HTVVIKGTQLYDPKAGGW---RDLGMLDIFGRAG 217 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlva----T~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~---~~~~~~~~~GRAG 217 (1492)
. .+.|++|+++|||| |++++||+|+|. ++.||+ |+.+...+ ....+.|++||+-
T Consensus 368 -~-l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~----y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 368 -K-FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF----YGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -H-HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE----eCCCCEEEeccccccCHHHHHHHH
Confidence 3 39999999999999 689999999999 788886 66444222 2345888999985
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=113.63 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=81.2
Q ss_pred cEEEEcCCCChhhHHHHHHHHhC--CCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCC
Q 043190 144 AVGVHHAGMLRSDRGLTERLFSE--GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 144 gv~~hhagl~~~~R~~ve~~f~~--g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~ 220 (1492)
.+++.+|+|||+.|..--.+|-+ +..+|||||+..+||+||..++||+.+.+.|++.+- .++.....|.+|||||.|
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 48999999999999999999998 899999999999999999999999999999986542 344456788999999986
Q ss_pred CC-ccceEEEEeCCccHHHHHHHhcC
Q 043190 221 FD-RSGEGIIITSHDKLAYYLRLLTS 245 (1492)
Q Consensus 221 ~d-~~G~~i~~~~~~~~~~~~~~~~~ 245 (1492)
-- ..|.+-.+. .+++..+.+.++.
T Consensus 463 s~~~~G~vTtl~-~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 463 SKYPQGEVTTLH-SEDLKLLKRILKR 487 (700)
T ss_pred cCCcCceEEEee-HhhHHHHHHHHhC
Confidence 31 236655554 4456666665554
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-08 Score=104.83 Aligned_cols=147 Identities=26% Similarity=0.322 Sum_probs=95.6
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc-ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY-RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
.+|..-|++.+|||+++ ...+.+.+..+ |-++|+-+... .-.-|.++|+...+.....+. .+ +++.+ +
T Consensus 213 ~tp~~KQvmmfsatlskeiRpvC~kFmQd-PmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl---~d-----LLd~L-e 282 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKEIRPVCHKFMQD-PMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKL---ND-----LLDVL-E 282 (387)
T ss_pred cCcccceeeeeeeecchhhHHHHHhhhcC-chhhhccchhhhhhhhHHHHHHhhhhhhhhhhh---hh-----hhhhh-h
Confidence 46788899999999997 66666666555 45555432222 122355555544433222211 11 11111 2
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
=.|++||+.|-.. |.
T Consensus 283 FNQVvIFvKsv~R-------l~---------------------------------------------------------- 297 (387)
T KOG0329|consen 283 FNQVVIFVKSVQR-------LS---------------------------------------------------------- 297 (387)
T ss_pred hcceeEeeehhhh-------hh----------------------------------------------------------
Confidence 3689999987553 10
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
| .-+ +|||+.+.||+|+..++++|+ ||-+. +..+|+||+|||||.| +.|.+|.+++.++-....
T Consensus 298 ---f---~kr-~vat~lfgrgmdiervNi~~N----Ydmp~---~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 298 ---F---QKR-LVATDLFGRGMDIERVNIVFN----YDMPE---DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred ---h---hhh-hHHhhhhccccCcccceeeec----cCCCC---CchHHHHHhhhhhccc--cccceeehhcchhhHHHh
Confidence 1 112 899999999999999999998 55332 3456999999999999 899999999876654443
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-07 Score=113.16 Aligned_cols=93 Identities=22% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHHHhccceE--eecCCCCHHHHHHHHHHHhcC-CceEEE-eccccccccCCCCcEEEEecceeeeCccCccccCCHHHH
Q 043190 970 LRQTLQFGIG--LHHAGLNDKDRSLVEELFANN-KIQVLV-CTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDI 1045 (1492)
Q Consensus 970 l~~~~~~~v~--~~h~~l~~~~R~~v~~~f~~g-~~~vLv-aT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~ 1045 (1492)
|.+..-..|. .+-|+.++.+|.++.++|.++ .++||+ +|-+.+-|+|+-+.+.||. ++ -|+.+..=
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF----vE------HDWNPMrD 1429 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF----VE------HDWNPMRD 1429 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE----Ee------cCCCchhh
Confidence 3333334444 678999999999999999998 788876 6668899999998877774 33 22333333
Q ss_pred HHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1046 LQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1046 ~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+|.+-||.|-|..+.-.+|.+.+....
T Consensus 1430 LQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1430 LQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred HHHHHHHHhhcCceeeeeeeehhcccH
Confidence 899999999997777888888877653
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=111.55 Aligned_cols=150 Identities=20% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCC---ceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCC---cc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSD---MKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT---PD 776 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~---~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~---~~ 776 (1492)
..+.++++.++|+|||..++..+.......+. ..+||++|. ++..+-..++.+.+... ..++..+.|... ..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc-ccccccccccccccccc
Confidence 45689999999999999887666543332222 259999999 77777677766654332 457888877651 11
Q ss_pred hhccCCCcEEEECchhhhHhhhcccC-ccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 777 LMALLSADIIISTPEKWDGISRNWHS-RNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 777 ~~~~~~~~Iiv~Tpe~l~~l~~~~~~-~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.......+++++|++.+...-..... ...--+.++||+||+|.+.+........+.. + . ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~-l-------~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRK-L-------R-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHC-C-------C-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccc-c-------c-cceEEeecccc
Confidence 22345789999999987611111101 1111358899999999985433333332221 2 2 56678899996
Q ss_pred CC--hHHHHH
Q 043190 856 AN--AGDLAD 863 (1492)
Q Consensus 856 ~~--~~~~~~ 863 (1492)
-. ..++..
T Consensus 173 ~~n~~~dl~~ 182 (299)
T PF00176_consen 173 IQNSLEDLYS 182 (299)
T ss_dssp SSSGSHHHHH
T ss_pred cccccccccc
Confidence 44 344443
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=107.10 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=57.6
Q ss_pred cCCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC----ceEEEEcccHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD----MKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~----~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
|+|. ++|.|.+.+..+ +..++++++.||||+|||++++.|++..+...+. .+++|.++|.++..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5676 599999955543 3478899999999999999999999876554333 3899999999998888776654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=107.10 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=57.6
Q ss_pred cCCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC----ceEEEEcccHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD----MKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~----~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
|+|. ++|.|.+.+..+ +..++++++.||||+|||++++.|++..+...+. .+++|.++|.++..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5676 599999955543 3478899999999999999999999876554333 3899999999998888776654
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=121.91 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCcEEEEEech---HHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 81 GHQAMVFVHSR---KDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 81 ~~~~lVF~~sr---~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+.++||||+|+ +.|+.+++.|.+. +..++..||+|+.
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~-------------------------------------g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH-------------------------------------GVKAVAYHATKPK--- 365 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC-------------------------------------CceEEEEeCCCCH---
Confidence 56899999999 8898888887643 2247889999973
Q ss_pred HHHHHHHhCCCccEEEec----cccccccCCCc-EEEEEeccceecCCC
Q 043190 158 GLTERLFSEGLLKVLVCT----ATLAWGVNLPA-HTVVIKGTQLYDPKA 201 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT----~tla~Gvnlp~-~~vVI~~~~~~~~~~ 201 (1492)
.+.+.|++|+++||||| ++++||+|+|+ +++||+ |+.+.
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~----~~~P~ 409 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF----LGVPK 409 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE----ECCCC
Confidence 68899999999999994 89999999999 799996 66543
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=118.42 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+...++++++++|=|||.+.|.++.+.++.... .+...|+-
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-------------------------------------~v~LlHSR 473 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-------------------------------------KVLLLHSR 473 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-------------------------------------CEEEEecc
Confidence 34445568899999999999999888888765421 27889999
Q ss_pred CChhhHHHHHHHHh----CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 152 MLRSDRGLTERLFS----EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 152 l~~~~R~~ve~~f~----~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
+...+|...|+.++ .+...|+|||.+.+.|||+. .+++|....+- .+.+||+||.+|.|.+..|.+
T Consensus 474 f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aPi---------dSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 474 FTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAPI---------DSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCCH---------HHHHHHHHHHhhcccccCCce
Confidence 99999999988554 57889999999999999997 56666433222 248999999999997777888
Q ss_pred EEEeCCc
Q 043190 228 IIITSHD 234 (1492)
Q Consensus 228 i~~~~~~ 234 (1492)
++....+
T Consensus 544 ~v~~~~~ 550 (733)
T COG1203 544 YVYNDEE 550 (733)
T ss_pred eEeeccc
Confidence 8887644
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=105.91 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. +..+| .+-.+. -+..-+.-+-||-|||+++.+|+.-.... +..+.+++..--||.--+..... +-.++|.
T Consensus 78 g~~-~~dVQ--liG~i~-lh~g~iaEM~TGEGKTL~atlp~ylnaL~--gkgVhvVTvNdYLA~RDae~m~~-l~~~LGl 150 (822)
T COG0653 78 GMR-HFDVQ--LLGGIV-LHLGDIAEMRTGEGKTLVATLPAYLNALA--GKGVHVVTVNDYLARRDAEWMGP-LYEFLGL 150 (822)
T ss_pred CCC-hhhHH--Hhhhhh-hcCCceeeeecCCchHHHHHHHHHHHhcC--CCCcEEeeehHHhhhhCHHHHHH-HHHHcCC
Confidence 544 33355 444432 34456889999999999999988754443 66777777777777665555544 4455699
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh--hHhhhc---ccCccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW--DGISRN---WHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~---~~~~~~l~~i~liViDEaH~l 820 (1492)
+|+....+.....+ ..-.+||..+|-..+ +.+-.+ ...........+.|+||++.+
T Consensus 151 svG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 151 SVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred ceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 99998887765533 334789999998775 322222 112344557889999999843
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-05 Score=105.07 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=87.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc--C
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL--L 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~--~ 781 (1492)
++..+|.=-||||||+......-........+++++|+-++.|-.|..+.+.. ++..... .. -..+...-.+.+ .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~~~-~~-~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGKVAFN-DP-KAESTSELKELLEDG 349 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHHhhhh-cc-cccCHHHHHHHHhcC
Confidence 35689999999999997766555444444578999999999999999999887 4333111 11 111111111111 2
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...|+|||-++|............-++=-+||+||||+- ..| ....+++... ++...+|+|+|+--
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G----~~~~~~~~~~----~~a~~~gFTGTPi~ 415 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYG----ELAKLLKKAL----KKAIFIGFTGTPIF 415 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--ccc----HHHHHHHHHh----ccceEEEeeCCccc
Confidence 458999999999777655311111223347899999954 222 2233333322 24788999999744
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-05 Score=89.88 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHhhhcCC----CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILYHTD----NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~----~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.+-|+|.+.+.-+.... .-.|+....|.|||..++..++.... +...++++|+.+|.+ ..+++.+.-. ..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~---ra~tLVvaP~VAlmQ-W~nEI~~~T~--gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD---RAPTLVVAPTVALMQ-WKNEIERHTS--GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc---cCCeeEEccHHHHHH-HHHHHHHhcc--Cc
Confidence 36788988665432111 23478889999999998777766443 567999999999763 3444443222 24
Q ss_pred CEEEEEcCCCC-cchhccCCCcEEEECchhhhHhhhcccC-----------ccccCcc--cEEEEecccccCCCCccHHH
Q 043190 764 KEMVEMTGDYT-PDLMALLSADIIISTPEKWDGISRNWHS-----------RNYVKKV--GLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 764 ~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~-----------~~~l~~i--~liViDEaH~l~~~~g~~~~ 829 (1492)
.++..++|... .+.+.+.+.|++.+|+..+.+..|+... ...+.++ .-||+||||.+.+ |.....
T Consensus 258 lkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~-R~snTA 336 (791)
T KOG1002|consen 258 LKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD-RQSNTA 336 (791)
T ss_pred eEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc-ccccHH
Confidence 68888898643 4566778999999999988777766211 1234444 4699999998854 333444
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..+-.++ ..+-+++|+|+-
T Consensus 337 rAV~~L~--------tt~rw~LSGTPL 355 (791)
T KOG1002|consen 337 RAVFALE--------TTYRWCLSGTPL 355 (791)
T ss_pred HHHHhhH--------hhhhhhccCCcc
Confidence 3443343 234478999863
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-05 Score=93.20 Aligned_cols=171 Identities=18% Similarity=0.169 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHhhhc----CCCcEEEecCCCCCchHHHHHHHHHH-----hccC---CCceEEEEcccHHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH----TDNNVLLGAPTGSGKTISAELAMLHL-----FNTQ---SDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~----~~~~vli~apTGsGKT~~~~l~il~~-----l~~~---~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
.+-|+|..++.-+.. .+.-.|+...-|-|||+..+-.|+.. .... ...+.|||||- +|..|...++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 477899998876652 23457889999999999766555542 1111 12259999997 67788888888
Q ss_pred HHhhhccCCEEEEEcCCCC--cchhccCCCcEEEECchhhhH----hhhcccCccccCc--ccEEEEecccccCCCCccH
Q 043190 756 DRLVSQLGKEMVEMTGDYT--PDLMALLSADIIISTPEKWDG----ISRNWHSRNYVKK--VGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~--~~~~~~~~~~Iiv~Tpe~l~~----l~~~~~~~~~l~~--i~liViDEaH~l~~~~g~~ 827 (1492)
+++... -++|..++|.-. ...+.+..+||+|+|+.-... -+........+-+ .+.||+||||.+-+ +...
T Consensus 404 ~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN-~~tq 481 (901)
T KOG4439|consen 404 RRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN-SNTQ 481 (901)
T ss_pred HHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc-cchh
Confidence 888776 789999999752 345567789999999864322 1111122222333 35799999998843 2334
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-----hHHHHHHhcCCc
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-----AGDLADWLGVGE 869 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-----~~~~~~~l~~~~ 869 (1492)
-...+.+++.. . -.++|+|+-. .-.+..|+++++
T Consensus 482 ~S~AVC~L~a~-------~-RWclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 482 CSKAVCKLSAK-------S-RWCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred HHHHHHHHhhc-------c-eeecccCccccchhHHHHHHHHhcCCC
Confidence 44455555432 2 3678888632 233556666654
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-06 Score=105.33 Aligned_cols=346 Identities=18% Similarity=0.237 Sum_probs=179.7
Q ss_pred CCCHHHHHHHH---hhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHHHHHHHHhhhcc-
Q 043190 688 HFNPIQTQIFH---ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERMNDWKDRLVSQL- 762 (1492)
Q Consensus 688 ~l~~~Q~~~i~---~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~- 762 (1492)
.+.++|...+. .+++++=|-|+.-.+|-|||.+-+-.|...+.. .-.+.-++|||+-.|.+ |...|..+.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-----W~~Ef~kWaP 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-----WSSEFPKWAP 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-----chhhcccccc
Confidence 57788888765 467777799999999999998765444332221 12467799999988775 666676652
Q ss_pred CCEEEEEcCCCCcc-----hhccCCCcEEEECchhhhHhhhcccCccccCc--ccEEEEecccccCCCCccHHHHHHHHH
Q 043190 763 GKEMVEMTGDYTPD-----LMALLSADIIISTPEKWDGISRNWHSRNYVKK--VGLMILDEIHLLGAERGPILEVIVSRM 835 (1492)
Q Consensus 763 g~~v~~~~g~~~~~-----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~--i~liViDEaH~l~~~~g~~~~~i~~~l 835 (1492)
.+..+.+.|.-... .....+.+|+++|+|.+. + .+..|+. ..++||||-|.|....+.....+-
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyii---k---dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~--- 539 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYII---K---DKALLSKISWKYMIIDEGHRMKNAICKLTDTLN--- 539 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhc---C---CHHHHhccCCcceeecccccccchhhHHHHHhh---
Confidence 33444445532111 011247899999998542 2 2334444 458999999988543322211111
Q ss_pred HHhhhccCCceEEEEEcCCCCC--------------------hHHHHHHhcCCcc--e-eEec------------CCCcc
Q 043190 836 RYISSQTERAVRFIGLSTALAN--------------------AGDLADWLGVGEI--G-LFNF------------KPSVR 880 (1492)
Q Consensus 836 ~~~~~~~~~~~~ii~lSATl~~--------------------~~~~~~~l~~~~~--~-~~~~------------~~~~r 880 (1492)
.... ..+-+++++|+.. ...+..|++.+-. + -... ..-.|
T Consensus 540 ----t~y~-~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLR 614 (1157)
T KOG0386|consen 540 ----THYR-AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLR 614 (1157)
T ss_pred ----cccc-chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhh
Confidence 1122 2333566666421 2446667654311 0 0000 00011
Q ss_pred ccCcEEEEec----cCCcc---ccccccccChhHHHHHhhcCCCCCeeEEecC---h---HHHHHHHHHHHHHHhcCCCC
Q 043190 881 PVPLEVHIQG----YPGKF---YCPRMNSMNKPAYAAICTHSPTKPVLIFVSS---R---RQTRLTALDLIQFAASDETP 947 (1492)
Q Consensus 881 ~~~l~~~~~~----~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s---~---~~~~~~a~~L~~~~~~~~~~ 947 (1492)
|+-+...-.. .|++. ....+.+..+..|..+... ..+++.+ + +....+...|++.|. .|
T Consensus 615 PFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~-----g~l~~d~~~g~~g~k~L~N~imqLRKiCN---HP 686 (1157)
T KOG0386|consen 615 PFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNK-----GQLLKDTAKGKKGYKPLFNTIMQLRKLCN---HP 686 (1157)
T ss_pred HHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhC-----CCCCcCchhccccchhhhhHhHHHHHhcC---Cc
Confidence 2111100000 01100 0011111112222222211 1112111 1 112222233333321 11
Q ss_pred ccc----------------CC--CChHHHHHHHhhcCc------------------HHHHHHhccceEeecCCCCHHHHH
Q 043190 948 RQF----------------LG--MPEEDLQMVLSQVTD------------------QNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 948 ~~~----------------~~--~~~~~~~~~~~~~~~------------------~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
-.| .. -..+-++..+..++. +.....-.+.-.-+-|....++|-
T Consensus 687 ~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg 766 (1157)
T KOG0386|consen 687 YLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERG 766 (1157)
T ss_pred hhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHH
Confidence 111 00 012333333333321 111222345566778889999999
Q ss_pred HHHHHHhcCC---ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 992 LVEELFANNK---IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 992 ~v~~~f~~g~---~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
..++.|..-. ...|.+|...+.|+|+...+.||. ||. |..+....|+.-||.|-|.-+.-.++.+.+
T Consensus 767 ~ll~~FN~Pds~yf~FllstragglglNlQtadtvii----fds------dwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 767 DLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII----FDS------DWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred HHHHHhcCCCCceeeeeeeecccccccchhhcceEEE----ecC------CCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999998644 457889999999999997766665 553 334567789999999988666677777665
Q ss_pred CC
Q 043190 1069 EP 1070 (1492)
Q Consensus 1069 ~~ 1070 (1492)
-.
T Consensus 837 v~ 838 (1157)
T KOG0386|consen 837 VN 838 (1157)
T ss_pred hh
Confidence 43
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=106.01 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhc-CCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRY-EDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
++++||||.|+..|+.+++.|.+..... +.. -...+...||+.+ +|..
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~-----------------------------~~~~v~~itg~~~--~~~~ 746 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQV-----------------------------EDDAVIKITGSID--KPDQ 746 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc-----------------------------CccceEEEeCCcc--chHH
Confidence 3689999999999999998887653221 000 0112445677764 5678
Q ss_pred HHHHHhCCCc-cEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCC
Q 043190 160 TERLFSEGLL-KVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQF 221 (1492)
Q Consensus 160 ve~~f~~g~i-~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~ 221 (1492)
+.+.|++|.. +|+||++.|..|+|+|.+..||- +.|.. +..-|+||+||+.|.-.
T Consensus 747 li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf----~rpvk---S~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 747 LIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF----LRRVR---SRILYEQMLGRATRLCP 802 (1123)
T ss_pred HHHHHhCCCCCeEEEEecccccCCCcccccEEEE----ecCCC---CHHHHHHHHhhhccCCc
Confidence 9999999987 68999999999999998887773 33322 44568999999999753
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-05 Score=102.52 Aligned_cols=201 Identities=19% Similarity=0.236 Sum_probs=112.8
Q ss_pred cccEEEEcccCC---ChHHHHHhcCCCCCCceEeecCCcccccc-eEEEEEeeC----CchhHHHHHhhHHHHHHHHHHH
Q 043190 7 MIRIVGLSATLP---NYLEVAQFLRVNPEMGLFFFDSSYRPIPL-AQQYIGISE----PNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 7 ~~riv~lSATl~---n~~~~a~~l~~~~~~~~~~~~~~~rpv~l-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
.-.+|++|||+. +.+-+++.+|-. +.....+. ..|.+. ++..+.++. .......... +.+...+.+.+
T Consensus 595 ~~~~il~SATL~~~~~~~~~~~~lGl~-~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~-~~ia~~i~~l~ 670 (850)
T TIGR01407 595 FKSLIFTSATLKFSHSFESFPQLLGLT-DVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYA-QEIASYIIEIT 670 (850)
T ss_pred CCeEEEEecccccCCChHHHHHhcCCC-ccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHH-HHHHHHHHHHH
Confidence 356899999998 567788888864 21111121 112221 111111111 1111111111 11122233333
Q ss_pred -hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 -~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
..++++|||++|.+..+.++..|...... .++.++..|.. ..|
T Consensus 671 ~~~~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r 714 (850)
T TIGR01407 671 AITSPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSR 714 (850)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccH
Confidence 24578999999999999998887642111 12223333433 578
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcE---EEEEeccceecCCC---------------CCccc-------Cchhhh
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAH---TVVIKGTQLYDPKA---------------GGWRD-------LGMLDI 212 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~---~vVI~~~~~~~~~~---------------~~~~~-------~~~~~~ 212 (1492)
..+.+.|++|.-.||+||+.++.|||+|+. .|||-+...-+|.. .++.. ..+.|-
T Consensus 715 ~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa 794 (850)
T TIGR01407 715 AKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQA 794 (850)
T ss_pred HHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHh
Confidence 999999999999999999999999999864 45665543222221 12222 224568
Q ss_pred hhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCc
Q 043190 213 FGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLP 248 (1492)
Q Consensus 213 ~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ 248 (1492)
+||.=|...| .|..+++-..-....|-+.+-...|
T Consensus 795 ~GRlIRs~~D-~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 795 LGRLIRREND-RGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hccccccCCc-eEEEEEEccccccchHHHHHHHhCC
Confidence 8999998765 5766666433233345443333333
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=89.29 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=89.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |++.|..+.-.+. .|+ |+...||-|||+++.+|..-.... |..+=+++...-||..=++.+...+. .+|+
T Consensus 75 g~~-p~~vQll~~l~L~-~G~--laEm~TGEGKTli~~l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 75 GLR-PYDVQLLGALALH-KGR--LAEMKTGEGKTLIAALPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp S-----HHHHHHHHHHH-TTS--EEEESTTSHHHHHHHHHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred CCc-ccHHHHhhhhhcc-cce--eEEecCCCCcHHHHHHHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 544 8888888776664 443 999999999999988876655443 78899999999999998888887665 4599
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhcccC---ccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWHS---RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~~---~~~l~~i~liViDEaH~l 820 (1492)
+++..+++.+.+. +..-.++|+++|...+ +.+..+... ....+.+.++||||||.+
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 9999998876443 2334679999999986 323222211 223568899999999944
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=99.91 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=87.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH-----HHhhhcc-C--CEEEEEcCCC---
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK-----DRLVSQL-G--KEMVEMTGDY--- 773 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~-----~~~~~~~-g--~~v~~~~g~~--- 773 (1492)
.++.+.++||+|||.+|+-.|+......+..+.|++||+.++-..+.+.+. ..|.... | +....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 589999999999999999999988777667899999999998877765543 3343322 2 2333343321
Q ss_pred ------Ccchh--------ccCCCcEEEECchhhhHh-h-hccc-------CccccCcc----cEEEEecccccCCCCcc
Q 043190 774 ------TPDLM--------ALLSADIIISTPEKWDGI-S-RNWH-------SRNYVKKV----GLMILDEIHLLGAERGP 826 (1492)
Q Consensus 774 ------~~~~~--------~~~~~~Iiv~Tpe~l~~l-~-~~~~-------~~~~l~~i----~liViDEaH~l~~~~g~ 826 (1492)
....+ .....+|+|+|.+.|..- . +... ....+..+ -.||+||.|.+..+ +.
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-~k 218 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-NK 218 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-hH
Confidence 11100 111458999999987542 1 1110 00111111 27999999998532 22
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.++.+ ..+. +.-++..|||.++
T Consensus 219 ~~~~i----~~ln-----pl~~lrysAT~~~ 240 (986)
T PRK15483 219 FYQAI----EALK-----PQMIIRFGATFPD 240 (986)
T ss_pred HHHHH----HhcC-----cccEEEEeeecCC
Confidence 34333 2221 2235669999976
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0008 Score=79.43 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=144.7
Q ss_pred CCcEEEECchhhhHhhhc----ccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHh-----------------hh
Q 043190 782 SADIIISTPEKWDGISRN----WHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI-----------------SS 840 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~----~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~-----------------~~ 840 (1492)
++|||||+|=-|..++.. .....+|+.+.++|+|.||.+....-..+..++..+... ..
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 579999999766555442 234567999999999999976432222333333333211 11
Q ss_pred ccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc--------ccCcEEEEeccCCcccccc----ccccChhH
Q 043190 841 QTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR--------PVPLEVHIQGYPGKFYCPR----MNSMNKPA 907 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r--------~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 907 (1492)
+...-.|.|++|+.... ...+-.--..+..+......... .+++...+..++....... .....+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 11224789999987632 12221110011111111111111 1223333333332221111 11111223
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
+..+......+.+|||+||--+-..+-+.|.+ -....+.+|--.+.
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~----------------------------------~~~sF~~i~EYts~ 336 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK----------------------------------ENISFVQISEYTSN 336 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHh----------------------------------cCCeEEEecccCCH
Confidence 33333245667899999998776666555532 13456677878888
Q ss_pred HHHHHHHHHHhcCCceEEEeccccc--cccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC-CCCCCceEEE
Q 043190 988 KDRSLVEELFANNKIQVLVCTSTLA--WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR-PQYDQHGKAV 1064 (1492)
Q Consensus 988 ~~R~~v~~~f~~g~~~vLvaT~~l~--~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR-~g~~~~G~~i 1064 (1492)
.+-...-..|..|+.++|+-|-=+- +-..+.++..||- |.+|.+. .=..+++.+++.... .+....+.|.
T Consensus 337 ~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~p---~fY~El~n~~~~~~~~~~~~~~~~~~ 409 (442)
T PF06862_consen 337 SDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPENP---QFYSELLNMLDESSGGEVDAADATVT 409 (442)
T ss_pred HHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCCh---hHHHHHHhhhcccccccccccCceEE
Confidence 8888899999999999999997432 5566777777774 7766531 014566666665443 1123467888
Q ss_pred EEecCCcHHHHHHhhc
Q 043190 1065 ILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~ 1080 (1492)
++++.-+.-.+++++.
T Consensus 410 ~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 410 VLYSKYDALRLERIVG 425 (442)
T ss_pred EEecHhHHHHHHHHhC
Confidence 8888776655555543
|
; GO: 0005634 nucleus |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.8e-05 Score=86.22 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHhhhcCCCc-EEEecCCCCCchHHHHHHHHHHh------ccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNN-VLLGAPTGSGKTISAELAMLHLF------NTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~-vli~apTGsGKT~~~~l~il~~l------~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
++|+-|.+|+..++ +... .+|.||.|+|||......+.... ....+.++++++|+.+.+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47899999999998 4555 99999999999976554444441 234689999999999999999888776
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.3e-05 Score=93.51 Aligned_cols=216 Identities=21% Similarity=0.192 Sum_probs=117.4
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCC-cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSS-YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
-++.+|+-||| |..|.+..-.... - ....+... .+..+....++.......... ..+...+++.+.+.+..|.|+
T Consensus 348 ~~~pvvLgSAT-PSLES~~~~~~g~-y-~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS~~Ll~~i~~~l~~geQ~ 423 (730)
T COG1198 348 ENAPVVLGSAT-PSLESYANAESGK-Y-KLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLSPALLEAIRKTLERGEQV 423 (730)
T ss_pred hCCCEEEecCC-CCHHHHHhhhcCc-e-EEEEccccccccCCCcceEEeccccccccC-ccCCHHHHHHHHHHHhcCCeE
Confidence 46789999999 6666665553321 1 11112111 233344445554432211110 014566778888888999999
Q ss_pred EEEEechHHH--------HHHHH------HH----------HHHHHhcCCccccCCCCchh---------hHHHHHHHhh
Q 043190 85 MVFVHSRKDT--------VKTAQ------KL----------VDLARRYEDLEVFNNDTHPQ---------LSLIKKDVMK 131 (1492)
Q Consensus 85 lVF~~sr~~~--------~~~a~------~l----------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 131 (1492)
|+|+|.|--+ ..+++ .| +.++..... .....+.-.+ .+.+
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~-~p~~Cp~Cgs~~L~~~G~Gteri------ 496 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEP-IPQSCPECGSEHLRAVGPGTERI------ 496 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCC-CCCCCCCCCCCeeEEecccHHHH------
Confidence 9999987533 22211 00 000000000 0000000000 0111
Q ss_pred cCchHHHHHh-cccEEEEcCCCChhh--HHHHHHHHhCCCccEEEeccccccccCCCcEEEEE--e-ccceecCCCCC--
Q 043190 132 SRNKDLIELF-GLAVGVHHAGMLRSD--RGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVI--K-GTQLYDPKAGG-- 203 (1492)
Q Consensus 132 ~~~~~l~~~~-~~gv~~hhagl~~~~--R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI--~-~~~~~~~~~~~-- 203 (1492)
.++|..++ ...|...-++..... =+...+.|.+|+..|||-|-.+|-|.|+|+++.|. + ++-.+.++-+.
T Consensus 497 --eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~E 574 (730)
T COG1198 497 --EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574 (730)
T ss_pred --HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHH
Confidence 23455555 345665555544433 34667899999999999999999999999988654 2 11222222110
Q ss_pred cccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 204 WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 204 ~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
..---+.|-+|||||.+ ..|.+++=|...+-
T Consensus 575 r~fqll~QvaGRAgR~~--~~G~VvIQT~~P~h 605 (730)
T COG1198 575 RTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHHHHhhhccCC--CCCeEEEEeCCCCc
Confidence 00112567899999987 67999999876653
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.9e-05 Score=94.57 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=78.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.+++|||.+...+..++..+... -++....+..++.+|..
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~--------------------------------------~~~~~it~~t~~~eR~~ 323 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAP--------------------------------------GIVEAITGETPKEEREA 323 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCC--------------------------------------CceEEEECCCCHHHHHH
Confidence 4679999999999998888766421 12556789999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCC
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~ 219 (1492)
+.+.|+.|.+++||++..|.-|||+|..+++|- -.|.. +...|.||+||.=|+
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----~~~t~---S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----LRPTG---SRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEE----eCCCC---cHHHHHHHhhhhccC
Confidence 999999999999999999999999999998884 22211 445599999999996
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.2e-05 Score=79.39 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
-.|+.|..++.+++ ..+.+++.||.|||||+.+....++.+..+.-.+++|+-|..+
T Consensus 4 p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 46889999999998 6789999999999999999999999888766789999999875
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=88.72 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=65.3
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+++..||.-|..|+.+++ +..-.||.||+|+|||....--+++.... ..+.+|+++|+...+.|+++.+.+. |
T Consensus 406 ~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~t-----g 478 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT-----G 478 (935)
T ss_pred CCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhc-----C
Confidence 488899999999999999 67788999999999999876555555444 5889999999999999988876653 6
Q ss_pred CEEEEEc
Q 043190 764 KEMVEMT 770 (1492)
Q Consensus 764 ~~v~~~~ 770 (1492)
++|.-+.
T Consensus 479 LKVvRl~ 485 (935)
T KOG1802|consen 479 LKVVRLC 485 (935)
T ss_pred ceEeeee
Confidence 7766553
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.7e-05 Score=97.92 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=68.4
Q ss_pred ccEEEEcCCCChhhHHHHHHHHhCC---CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCC
Q 043190 143 LAVGVHHAGMLRSDRGLTERLFSEG---LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219 (1492)
Q Consensus 143 ~gv~~hhagl~~~~R~~ve~~f~~g---~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~ 219 (1492)
++....||+++.++|..+.+.|.+. ..-+|+||...+.||||...++||. ||+ .|.+....|++|||-|.
T Consensus 512 ~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD~---dWNP~~d~QAidRaHRI 584 (1033)
T PLN03142 512 YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YDS---DWNPQVDLQAQDRAHRI 584 (1033)
T ss_pred CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eCC---CCChHHHHHHHHHhhhc
Confidence 4567789999999999999999753 3467899999999999988777775 554 35666689999999999
Q ss_pred CCCccceEEEEeCCccH
Q 043190 220 QFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 220 ~~d~~G~~i~~~~~~~~ 236 (1492)
|....=.++.++.....
T Consensus 585 GQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 585 GQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred CCCceEEEEEEEeCCcH
Confidence 96655556666665544
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00067 Score=78.33 Aligned_cols=338 Identities=16% Similarity=0.172 Sum_probs=173.9
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEe-cCCCCCc--hHHHHHHHHHHhccC-----------------------------CC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLG-APTGSGK--TISAELAMLHLFNTQ-----------------------------SD 734 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~-apTGsGK--T~~~~l~il~~l~~~-----------------------------~~ 734 (1492)
..+++.|.+.+..+. +-++++.. ..-|.|+ +-+|.+-+++++.+. ..
T Consensus 215 ~pltalQ~~L~~~m~-~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF-NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHHH-hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 468999999998876 66776642 2223455 456667676654210 24
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhhc-cCCE--------EEEEcCCCCc---------chh------------------
Q 043190 735 MKVVYIAPLKAIVRERMNDWKDRLVSQ-LGKE--------MVEMTGDYTP---------DLM------------------ 778 (1492)
Q Consensus 735 ~~~l~i~P~r~La~q~~~~~~~~~~~~-~g~~--------v~~~~g~~~~---------~~~------------------ 778 (1492)
+++|+++|+|+-|..+.+.+...+... -|.. -+.+.|+... +-+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 799999999999999998887764311 0100 1122221110 000
Q ss_pred --------ccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC---
Q 043190 779 --------ALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE--- 843 (1492)
Q Consensus 779 --------~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~--- 843 (1492)
...++||+||+|=-|..++.+. ....+++.+.++|||-+|.+... .|+.++..+.++..+..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q---NwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ---NWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh---hHHHHHHHHHHhhcCccccc
Confidence 0115799999997776555522 22457899999999999976432 34444444433322111
Q ss_pred ----CceEEEEE-------------cCCCCChHHHHHHhcC---CcceeEecCC-----Cccc--cCcEEEEeccCCccc
Q 043190 844 ----RAVRFIGL-------------STALANAGDLADWLGV---GEIGLFNFKP-----SVRP--VPLEVHIQGYPGKFY 896 (1492)
Q Consensus 844 ----~~~~ii~l-------------SATl~~~~~~~~~l~~---~~~~~~~~~~-----~~r~--~~l~~~~~~~~~~~~ 896 (1492)
..+|...+ |+-. + .++...+.. +-.+.+.+.+ .... +++...+..+.....
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 12333333 2221 1 111111110 0001110000 0111 111111111111110
Q ss_pred cc----cccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH
Q 043190 897 CP----RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ 972 (1492)
Q Consensus 897 ~~----~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 972 (1492)
.. +...........+.. .....+|||.|+--+-.++-..+.+..
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k-~t~s~~LiyIPSYfDFVRvRNy~K~e~------------------------------- 576 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIK-RTESGILIYIPSYFDFVRVRNYMKKEE------------------------------- 576 (698)
T ss_pred ccCchHHHHHHHHhhchhhcc-cccCceEEEecchhhHHHHHHHhhhhh-------------------------------
Confidence 00 000000000111111 123468999999877666665553321
Q ss_pred HhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccc--cccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhc
Q 043190 973 TLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA--WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050 (1492)
Q Consensus 973 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~--~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~G 1050 (1492)
.....+|---+...-...-+.|-.|..+||+-|--+- +-.++.++.-||. |.++.+ +.=..+++.|.|
T Consensus 577 ---i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf----YqpP~~---P~FYsEiinm~~ 646 (698)
T KOG2340|consen 577 ---ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF----YQPPNN---PHFYSEIINMSD 646 (698)
T ss_pred ---cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE----ecCCCC---cHHHHHHHhhhh
Confidence 0011112122233334455678899999999997543 6678888888886 777754 111678999999
Q ss_pred ccCCCC--CCCceEEEEEecCCcH
Q 043190 1051 RAGRPQ--YDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1051 RagR~g--~~~~G~~i~l~~~~~~ 1072 (1492)
|+.-.| ....-.|.++++.-+.
T Consensus 647 k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 647 KTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhccCCccccceEEEEEeechhh
Confidence 875433 4455677888776553
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00051 Score=85.83 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+.+....|.|+||.|.|...++.++..|.+.... -.+.+|.
T Consensus 417 ~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~-------------------------------------h~vLNAk 459 (925)
T PRK12903 417 KEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIP-------------------------------------HTVLNAK 459 (925)
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-------------------------------------ceeeccc
Confidence 344444467999999999999999999888754211 1122332
Q ss_pred CChhhHHHHHHHHhCCC-ccEEEeccccccccCCCcE--------EEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 152 MLRSDRGLTERLFSEGL-LKVLVCTATLAWGVNLPAH--------TVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~-i~vlvaT~tla~Gvnlp~~--------~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
-...+-..|- ..|. -.|.|||+.++||.|+--- .+|| ||.+.+... =-.|..|||||-|
T Consensus 460 ~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVI-gTerheSrR------IDnQLrGRaGRQG-- 527 (925)
T PRK12903 460 QNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVL-GTDKAESRR------IDNQLRGRSGRQG-- 527 (925)
T ss_pred chhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEE-ecccCchHH------HHHHHhcccccCC--
Confidence 1112222221 4453 4789999999999998422 1444 343322211 0246889999998
Q ss_pred ccceEEEEeCCcc-H-------HHHHHHhcC--CCccccchhHhHHHHH-------HHHHHhCcccCHHHHHHHhhhhhh
Q 043190 223 RSGEGIIITSHDK-L-------AYYLRLLTS--QLPIESQFISSLKDNL-------NAEVALGTVTNVKEACAWLGYTYL 285 (1492)
Q Consensus 223 ~~G~~i~~~~~~~-~-------~~~~~~~~~--~~~ies~l~~~l~~~l-------~~ei~~~~i~~~~~~~~~~~~t~~ 285 (1492)
..|.+-.+.+-+| + +.+.+++.. ..||++.......+.- |..+ ...+-..++.++.=+...|
T Consensus 528 DpGss~f~lSLeD~L~r~f~~~~ri~~~~~~l~~~~i~~~~i~~~ie~AQkkvE~~nfdi-RK~ll~yDdV~n~QR~~IY 606 (925)
T PRK12903 528 DVGESRFFISLDDQLFRRFSNFDKIKEAFKKLGDDEIKSKFFSKALLNAQKKIEGFNFDT-RKNVLDYDDVIRQQRDLIY 606 (925)
T ss_pred CCCcceEEEecchHHHHHhCCHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6788777766443 1 222322221 2377777655433322 2111 2223345555555555555
Q ss_pred hhh
Q 043190 286 SIR 288 (1492)
Q Consensus 286 ~~r 288 (1492)
..|
T Consensus 607 ~~R 609 (925)
T PRK12903 607 AQR 609 (925)
T ss_pred HHH
Confidence 444
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=78.12 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHhhhc--CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYH--TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~--~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.+++.|.++...+.+ ++.|.+...-+|.|||.+. .|++..+..++..-+.+++| ++|..|.++.+..+++..+|.+
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~ 100 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRR 100 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCe
Confidence 489999999988874 3579999999999999885 57776665544555666666 5899999999999999888888
Q ss_pred EEEEcCCCC--cch-----------hccCCCcEEEECchhhhHhhhcccC----------------ccccCcccEEEEec
Q 043190 766 MVEMTGDYT--PDL-----------MALLSADIIISTPEKWDGISRNWHS----------------RNYVKKVGLMILDE 816 (1492)
Q Consensus 766 v~~~~g~~~--~~~-----------~~~~~~~Iiv~Tpe~l~~l~~~~~~----------------~~~l~~i~liViDE 816 (1492)
+..+.=+.. .+. .......|+++|||.+.++.-.+.. ..++.+...=|+||
T Consensus 101 i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDE 180 (229)
T PF12340_consen 101 IYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDE 180 (229)
T ss_pred eEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeEC
Confidence 776643322 111 1112568999999986544322110 12344556679999
Q ss_pred cccc
Q 043190 817 IHLL 820 (1492)
Q Consensus 817 aH~l 820 (1492)
+|..
T Consensus 181 sDe~ 184 (229)
T PF12340_consen 181 SDEI 184 (229)
T ss_pred chhc
Confidence 9954
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=77.38 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
+|++-|.+++..++.++ +-.++.||.|+|||.+. ..+...+.. .+.++++++||...+.+..+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-~g~~v~~~apT~~Aa~~L~~ 64 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-AGKRVIGLAPTNKAAKELRE 64 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-TT--EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-CCCeEEEECCcHHHHHHHHH
Confidence 47899999999997555 45778899999999864 445555555 36899999999988776443
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0011 Score=88.40 Aligned_cols=204 Identities=17% Similarity=0.157 Sum_probs=114.4
Q ss_pred cccEEEEcccCCC---hHHHHHhcCCCCC-CceEeecCCcccccceEEEEE--eeCCchhHHHHHhhHHHHHHHHHHH-h
Q 043190 7 MIRIVGLSATLPN---YLEVAQFLRVNPE-MGLFFFDSSYRPIPLAQQYIG--ISEPNFAARNELLSEICYKKVVDSL-R 79 (1492)
Q Consensus 7 ~~riv~lSATl~n---~~~~a~~l~~~~~-~~~~~~~~~~rpv~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (1492)
.-.+|++|||+.. ..-+++.+|-... .....+.+.+..-.-...++. .+......... ..+.+.+.+.+.+ .
T Consensus 672 ~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~-~~~~la~~i~~l~~~ 750 (928)
T PRK08074 672 KKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEE-YIEEVAAYIAKIAKA 750 (928)
T ss_pred CCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHH-HHHHHHHHHHHHHHh
Confidence 4568999999983 4455677876421 112334443321011111221 11111111111 1122223333433 3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++|||++|.+..+.++..|...... .++.+.-=|+....|..
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----------------------------------~~~~ll~Qg~~~~~r~~ 795 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----------------------------------EGYVLLAQGVSSGSRAR 795 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccc-----------------------------------cCceEEecCCCCCCHHH
Confidence 4678999999999999998888643211 01111122555567889
Q ss_pred HHHHHhCCCccEEEeccccccccCCCc---EEEEEeccceec-CCC---------------CCcccC-------chhhhh
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPA---HTVVIKGTQLYD-PKA---------------GGWRDL-------GMLDIF 213 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~-~~~---------------~~~~~~-------~~~~~~ 213 (1492)
+.+.|+++.-.||++|..+..|||+|. ..|||-+. +|. |.. .+|... .+.|-+
T Consensus 796 l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL-PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~ 874 (928)
T PRK08074 796 LTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL-PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGF 874 (928)
T ss_pred HHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC-CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhh
Confidence 999999998899999999999999986 45667654 343 221 123222 235678
Q ss_pred hccCCCCCCccceEEEEeCCccHHHHHHHhcCCCc
Q 043190 214 GRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLP 248 (1492)
Q Consensus 214 GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ 248 (1492)
||.=|...| .|..+++-..-....|-+.+-...|
T Consensus 875 GRlIRs~~D-~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 875 GRLIRTETD-RGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hhhcccCCc-eEEEEEecCccccchHHHHHHHhCC
Confidence 999998765 5766665444333445443333333
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00069 Score=83.48 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=104.0
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. +. .-+..+|+-....--.+-.. ...+. . .+.+.+.+....|.|+||.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~----Vv-~IPtnkp~~R~d~~d~iy~t-~~~k~---~-Aii~ei~~~~~~GrPVLVg 433 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG----VS-VIPPNKPNIREDEADRVYAT-AAEKN---D-AIVEHIAEVHETGQPVLVG 433 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc----EE-ECCCCCCceeecCCCceEeC-HHHHH---H-HHHHHHHHHHHcCCCEEEE
Confidence 57799999865 55566655543 33 33455664332210000011 11111 1 1223444445789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
+.|-...+.++..|.+.... .-+++|.=...+=..|- ..|
T Consensus 434 t~sI~~SE~ls~~L~~~gI~-------------------------------------h~vLNAk~~~~EA~IIa---~AG 473 (764)
T PRK12326 434 THDVAESEELAERLRAAGVP-------------------------------------AVVLNAKNDAEEARIIA---EAG 473 (764)
T ss_pred eCCHHHHHHHHHHHHhCCCc-------------------------------------ceeeccCchHhHHHHHH---hcC
Confidence 99999999999888754211 12233331222222222 234
Q ss_pred C-ccEEEeccccccccCCC---------------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 168 L-LKVLVCTATLAWGVNLP---------------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 168 ~-i~vlvaT~tla~Gvnlp---------------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
. -.|.|||+.+.||.|+- .=..|| ||.+.+... --.|..|||||-| ..|.+-.+.
T Consensus 474 ~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVI-gTerheSrR------ID~QLrGRaGRQG--DpGss~f~l 544 (764)
T PRK12326 474 KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVI-GTGRHRSER------LDNQLRGRAGRQG--DPGSSVFFV 544 (764)
T ss_pred CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEE-eccCCchHH------HHHHHhcccccCC--CCCceeEEE
Confidence 3 36889999999998873 122344 343332211 1346889999988 678888777
Q ss_pred CCcc-HH-H------HHHHhcCCCccccchhHhHHHH
Q 043190 232 SHDK-LA-Y------YLRLLTSQLPIESQFISSLKDN 260 (1492)
Q Consensus 232 ~~~~-~~-~------~~~~~~~~~~ies~l~~~l~~~ 260 (1492)
+-+| +- . ....+.+..||++.......++
T Consensus 545 SleDdl~~~f~~~~~~~~~~~~~~~i~~~~~~~~i~~ 581 (764)
T PRK12326 545 SLEDDVVAANLAGEKLPAQPDEDGRITSPKAADLVDH 581 (764)
T ss_pred EcchhHHHhcCchhhhhcCCCCCCcCcChhHHHHHHH
Confidence 6443 11 1 1111223456777665544443
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=62.32 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc--cCCCceEEEEcccHHHHHHHHHHH
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN--TQSDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~--~~~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
++...+.++..++|.||.|||||....-.+...+. ..++.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34433433556677999999999877766666653 223779999999999999877765
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0002 Score=84.56 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
+.+++-|++|+..+.+...-.++.||+|+|||.....-|.+.+.+ +.++|+++||...+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhc
Confidence 368999999999988655778999999999999888888887775 7999999999998888777543
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00072 Score=74.94 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHhhh-------c--CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 688 HFNPIQTQIFHILY-------H--TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~-------~--~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.+...|.+++--+. . ...-+++.-.||.||-....-.|++.+.++ ..+.|+++.+-.|-....++|+. +
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~r~vwvS~s~dL~~Da~RDl~D-I 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RKRAVWVSVSNDLKYDAERDLRD-I 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CCceEEEECChhhhhHHHHHHHH-h
Confidence 46788888664332 1 234678888999999988777788877663 46799999999999998888887 3
Q ss_pred hhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc-cCcccc---------CcccEEEEecccccCCC-----
Q 043190 759 VSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW-HSRNYV---------KKVGLMILDEIHLLGAE----- 823 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~-~~~~~l---------~~i~liViDEaH~l~~~----- 823 (1492)
+.. .+.+..+.. .........+..|+++|+..|..-.+.. .....+ ..=.+||+||||.....
T Consensus 115 G~~-~i~v~~l~~-~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 192 (303)
T PF13872_consen 115 GAD-NIPVHPLNK-FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSK 192 (303)
T ss_pred CCC-cccceechh-hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCc
Confidence 322 223332221 1111111235579999998775553211 011111 12359999999977432
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
........+..++.. -++.|++.+|||-
T Consensus 193 ~~sk~g~avl~LQ~~----LP~ARvvY~SATg 220 (303)
T PF13872_consen 193 KPSKTGIAVLELQNR----LPNARVVYASATG 220 (303)
T ss_pred cccHHHHHHHHHHHh----CCCCcEEEecccc
Confidence 123334444444432 2467899999995
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=88.70 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=71.6
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcC--CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhccc
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANN--KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRa 1052 (1492)
+.....++|+++.++|...++.|.++ ..-++++|.+.+.|+|+-...+||. ||+ +..++...|...||
T Consensus 735 ~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~----~d~------~wnp~~~~Qa~dRa 804 (866)
T COG0553 735 GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL----FDP------WWNPAVELQAIDRA 804 (866)
T ss_pred CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE----ecc------ccChHHHHHHHHHH
Confidence 35788999999999999999999986 4556778889999999999999998 442 23467778999999
Q ss_pred CCCCCCCceEEEEEecCCc
Q 043190 1053 GRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1053 gR~g~~~~G~~i~l~~~~~ 1071 (1492)
.|.|..+.-.++.+...+.
T Consensus 805 ~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 805 HRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HHhcCcceeEEEEeecCCc
Confidence 9988778888888887766
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00038 Score=75.87 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
++.-.|..|...+..+. ++..+++.||+|+|||+.+....++.+..+.-.++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 55667889999998876 5679999999999999999888887665444566777777754
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00088 Score=87.18 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=107.6
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEE-EEEeeCCchhHHH-HHhhHHHHHHHHHHHh-cCCc
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ-YIGISEPNFAARN-ELLSEICYKKVVDSLR-QGHQ 83 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 83 (1492)
..-.|++||||.....+..+++.......+.+-.-..|.+-... ...++. ...... ..........+.+.+. .++.
T Consensus 403 ~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 481 (654)
T COG1199 403 VASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPT-DLPEPREPELLAKLAAYLREILKASPGG 481 (654)
T ss_pred cCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccc-cCCCCCChHHHHHHHHHHHHHHhhcCCC
Confidence 34589999999987777777766532222101111112111111 112211 111111 1111222233334332 3458
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||++|.+....+++.+...... . .-.-++. ..+....+.
T Consensus 482 ~lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~---~~~~~~l~~ 522 (654)
T COG1199 482 VLVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGE---DEREELLEK 522 (654)
T ss_pred EEEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCC---CcHHHHHHH
Confidence 999999999998888877643110 0 1112333 333455555
Q ss_pred HhCCCc-cEEEeccccccccCCCc---EEEEEeccceecCCC---------------CCccc-------CchhhhhhccC
Q 043190 164 FSEGLL-KVLVCTATLAWGVNLPA---HTVVIKGTQLYDPKA---------------GGWRD-------LGMLDIFGRAG 217 (1492)
Q Consensus 164 f~~g~i-~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~~~~---------------~~~~~-------~~~~~~~GRAG 217 (1492)
|+.+.= .++|+|..++.|||+|. ..|||-|...-+|.. .+|.. ..+.|-+||+=
T Consensus 523 f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 523 FKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 665444 99999999999999986 467776644322221 11222 23467899999
Q ss_pred CCCCCccceEEEEeCCccHHHHHHHhcCCC
Q 043190 218 RPQFDRSGEGIIITSHDKLAYYLRLLTSQL 247 (1492)
Q Consensus 218 R~~~d~~G~~i~~~~~~~~~~~~~~~~~~~ 247 (1492)
|. .+..|..+++=..-....|.+.+....
T Consensus 603 R~-~~D~G~ivllD~R~~~~~y~~~l~~~l 631 (654)
T COG1199 603 RS-EDDRGVIVLLDKRYATKRYGKLLLDSL 631 (654)
T ss_pred cc-CCCceEEEEecccchhhhHHHHHHHhC
Confidence 95 455788888865544444655544433
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0045 Score=79.93 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=101.4
Q ss_pred ccEEEEcccCCCh---HHHHHhcCCCC--CCceEeecCCcccccceEEEEEeeCC--chhHHHHHhhHHHHHHHHHHHhc
Q 043190 8 IRIVGLSATLPNY---LEVAQFLRVNP--EMGLFFFDSSYRPIPLAQQYIGISEP--NFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 8 ~riv~lSATl~n~---~~~a~~l~~~~--~~~~~~~~~~~rpv~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
.-+|++|||++.. ..+.+.+|-.. ......+.+.+.. . .+..+.++.. ........ .+.+.+.+.+.+..
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~-~-~q~~l~vp~~~~~p~~~~~~-~~~~~~~i~~l~~~ 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDY-P-NQGKLVIPKMRAEPDNEEAH-TAEMAEFLPELLEK 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCH-H-HccEEEeCCCCCCCCCcHHH-HHHHHHHHHHHHhc
Confidence 4689999999854 44555566541 1222333333311 1 1111112211 11011111 12222333344444
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++.+|||++|.+..+.++..+.... ...+-.+ +. ..|..+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~------------------------------------~~~ll~Q-~~---~~~~~l 573 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL------------------------------------RLMLLVQ-GD---QPRQRL 573 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc------------------------------------CCcEEEe-CC---chHHHH
Confidence 4558999999999998888775421 0113333 32 246667
Q ss_pred HHHHh----CCCccEEEeccccccccCCCc---EEEEEeccceecCCC---------------CCccc-------Cchhh
Q 043190 161 ERLFS----EGLLKVLVCTATLAWGVNLPA---HTVVIKGTQLYDPKA---------------GGWRD-------LGMLD 211 (1492)
Q Consensus 161 e~~f~----~g~i~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~~~~---------------~~~~~-------~~~~~ 211 (1492)
.+.|+ .|.-.||++|..+..|||+|+ ..|||-+...-.|.. .+|.. +.+.|
T Consensus 574 l~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Q 653 (697)
T PRK11747 574 LEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQ 653 (697)
T ss_pred HHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 76676 467789999999999999986 567776543322221 11211 12456
Q ss_pred hhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 212 IFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 212 ~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
-+||.=|...| .|..+++-..-.-..|
T Consensus 654 g~GRlIRs~~D-~G~i~ilD~R~~~~~Y 680 (697)
T PRK11747 654 AVGRLIRSEQD-RGRVTILDRRLLTKRY 680 (697)
T ss_pred HhccccccCCc-eEEEEEEcccccchhH
Confidence 78999997655 6776666443233344
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0039 Score=79.21 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=92.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.||+.|... .++|.+..+.. ++ .-+..+|+-...+--.+-.. ...+. . .+...+.+....|.|+||-
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~----v~-~iPt~kp~~r~d~~d~iy~t-~~~k~---~-ai~~ei~~~~~~grPvLig 574 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY----VL-QVPTFKPCLRIDHNDEFYMT-EREKY---H-AIVAEIASIHRKGNPILIG 574 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----EE-ECCCCCCceeeeCCCcEecC-HHHHH---H-HHHHHHHHHHhCCCCEEEE
Confidence 67899999865 34454444432 32 34566664432210000011 11111 1 1223344444788999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|.|-...+.++..|.+.... -.+.+|.=...+-..|- ..|
T Consensus 575 t~si~~se~ls~~L~~~gi~-------------------------------------h~vLNak~~~~Ea~iia---~AG 614 (970)
T PRK12899 575 TESVEVSEKLSRILRQNRIE-------------------------------------HTVLNAKNHAQEAEIIA---GAG 614 (970)
T ss_pred eCcHHHHHHHHHHHHHcCCc-------------------------------------ceecccchhhhHHHHHH---hcC
Confidence 99999998888887653211 11122221122222222 234
Q ss_pred C-ccEEEeccccccccCCCc--------EEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 L-LKVLVCTATLAWGVNLPA--------HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~-i~vlvaT~tla~Gvnlp~--------~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
. -.|.|||+.++||.|+-- =.+|| ||.+.+.. .--.|..|||||-| ..|.+..+.+-+|
T Consensus 615 ~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVI-gTer~es~------Rid~Ql~GRagRQG--dpGss~f~lSlED 682 (970)
T PRK12899 615 KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVI-GTSRHQSR------RIDRQLRGRCARLG--DPGAAKFFLSFED 682 (970)
T ss_pred CCCcEEEeeccccCCcccccCchHHhcCCcEEE-eeccCchH------HHHHHHhcccccCC--CCCceeEEEEcch
Confidence 4 368999999999999831 12333 23332211 11456889999998 7798888876544
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00039 Score=86.55 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=92.1
Q ss_pred CCCHHHHHHHH---hhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC--ceEEEEcccHHHHHHHHHHHHHHhhhc-
Q 043190 688 HFNPIQTQIFH---ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD--MKVVYIAPLKAIVRERMNDWKDRLVSQ- 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~---~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~--~~~l~i~P~r~La~q~~~~~~~~~~~~- 761 (1492)
.++.||...++ .+|+.+-|.|+.-..|-|||... +.++.++.+.++ +-=||+|||-.+.+ |.-.|+.+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWGPHLIVVpTsviLn-----WEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWGPHLIVVPTSVILN-----WEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCCCceEEeechhhhh-----hhHHHhhhC
Confidence 47889998776 46777789999999999999875 455666665433 56689999977554 55445444
Q ss_pred cCCEEEEEcCCCCcchhc------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 762 LGKEMVEMTGDYTPDLMA------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.|+++..+.|.-...... -+..+|.|+++..+..-++.. .-.+..++|+||+|.+..-....|+.++.
T Consensus 689 PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF----krkrWqyLvLDEaqnIKnfksqrWQAlln 762 (1958)
T KOG0391|consen 689 PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF----KRKRWQYLVLDEAQNIKNFKSQRWQALLN 762 (1958)
T ss_pred CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH----HhhccceeehhhhhhhcchhHHHHHHHhc
Confidence 388999998865432221 123589999887542222211 12467899999999986655556766654
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0033 Score=78.83 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=82.7
Q ss_pred HhhhcCCC-CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHH--HHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 680 YEALYNFS-HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAM--LHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 680 ~~~~~~~~-~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~i--l~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+..+|+.. ...++|++|+...+ .++.++|.|++|+|||++....+ +......+..++++.+||...|....+....
T Consensus 143 l~~lf~~~~~~~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 143 LDALFGPVTDEVDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHhcCcCCCCCHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 34455433 23589999999887 67899999999999998753322 2222222346789999999888776665544
Q ss_pred HhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
..... +. ..... .....-..|-.++....... ......-..+++||||+-+++- ..+..++
T Consensus 222 ~~~~~-~~---------~~~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~---~lm~~ll 286 (615)
T PRK10875 222 ALRQL-PL---------TDEQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL---PMMARLI 286 (615)
T ss_pred hhhcc-cc---------chhhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH---HHHHHHH
Confidence 33221 11 00000 00011223444433221110 0111233568999999998842 1222233
Q ss_pred HHHHHhhhccCCceEEEEEc
Q 043190 833 SRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lS 852 (1492)
. ..+...|+|++-
T Consensus 287 ~-------al~~~~rlIlvG 299 (615)
T PRK10875 287 D-------ALPPHARVIFLG 299 (615)
T ss_pred H-------hcccCCEEEEec
Confidence 3 234577888874
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=73.63 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=49.5
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.||+.|... .++|.+..+.. +. .-+..||+-....--.+-.. ...+.. .+.+.+.+....|.|+||-
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~----vv-~IPtnkp~~R~d~~d~v~~t-~~~K~~----AI~~ei~~~~~~grPVLIg 430 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE----VV-CIPTHRPMLRKDLPDLIYKD-ELSKWR----AIADECLQMHQTGRPILIG 430 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----EE-ECCCCCCccceeCCCeEEeC-HHHHHH----HHHHHHHHHHhcCCCEEEe
Confidence 57899999865 33455555443 33 34556665433221011111 111111 1223444555789999999
Q ss_pred EechHHHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~ 104 (1492)
|.|-...+.+++.|.+.
T Consensus 431 T~SIe~SE~ls~~L~~~ 447 (870)
T CHL00122 431 TTTIEKSELLSQLLKEY 447 (870)
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 99999999988888654
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0097 Score=78.03 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred HHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChh
Q 043190 76 DSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRS 155 (1492)
Q Consensus 76 ~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~ 155 (1492)
.....++++||+++|.+..+.++..|... . . .+-....+.+
T Consensus 642 ~~~~~~g~~LVLFtS~~~l~~v~~~l~~~--~---~--------------------------------~~l~Qg~~~~-- 682 (820)
T PRK07246 642 ELKQLQQPILVLFNSKKHLLAVSDLLDQW--Q---V--------------------------------SHLAQEKNGT-- 682 (820)
T ss_pred HHHhcCCCEEEEECcHHHHHHHHHHHhhc--C---C--------------------------------cEEEeCCCcc--
Confidence 33345789999999999998887777421 0 0 0211111222
Q ss_pred hHHHHHHHHhCCCccEEEeccccccccCCC---cEEEEEeccceecCCC---------------CCcccCc-------hh
Q 043190 156 DRGLTERLFSEGLLKVLVCTATLAWGVNLP---AHTVVIKGTQLYDPKA---------------GGWRDLG-------ML 210 (1492)
Q Consensus 156 ~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp---~~~vVI~~~~~~~~~~---------------~~~~~~~-------~~ 210 (1492)
|..+.+.|+++.-.||++|..+..|||+| ...|||.+...-.|.. .++...+ +.
T Consensus 683 -~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklk 761 (820)
T PRK07246 683 -AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLK 761 (820)
T ss_pred -HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHH
Confidence 45578889999889999999999999997 3566776543222211 1232222 34
Q ss_pred hhhhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCc
Q 043190 211 DIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLP 248 (1492)
Q Consensus 211 ~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ 248 (1492)
|-+||.=|...| .|.++++=..-.-..|-+.+-...|
T Consensus 762 Qg~GRLIRs~~D-~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 762 QAIGRTMRREDQ-KSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHhcccccCCCC-cEEEEEECCcccccHHHHHHHHhCC
Confidence 578999997755 6866655433222334333333344
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0049 Score=77.26 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=77.8
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHH--HHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAM--LHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~i--l~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.+.|++++..++ .++.++|+|+.|+|||++....+ +...... ...++++.+||-..|..+.+......... +..
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l-~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL-AAA- 223 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-ccc-
Confidence 379999999988 57899999999999998654322 2221111 12579999999887776555544332211 100
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+ ......+-..|-.++....... ........+++|||||+=+++. +.+..++.. .
T Consensus 224 ----~~------~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~---~l~~~ll~a-------l 283 (586)
T TIGR01447 224 ----EA------LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL---PLMAKLLKA-------L 283 (586)
T ss_pred ----hh------hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH---HHHHHHHHh-------c
Confidence 00 0001112234444443221110 0011223678999999998842 233333333 2
Q ss_pred CCceEEEEEc
Q 043190 843 ERAVRFIGLS 852 (1492)
Q Consensus 843 ~~~~~ii~lS 852 (1492)
+...|+|++-
T Consensus 284 ~~~~rlIlvG 293 (586)
T TIGR01447 284 PPNTKLILLG 293 (586)
T ss_pred CCCCEEEEEC
Confidence 4567888764
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0046 Score=78.77 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=102.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
.+-||+.|... ..+|.+..+.. +. .-+..||+--..+--.+-.. ...+. + .+.+.+.+....|.|+||=
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~----Vv-~IPTnrP~~R~D~~D~vy~t-~~eK~---~-Aii~ei~~~~~~GrPVLVG 634 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLD----VV-VIPTNRPIARKDKEDLVYKT-KREKY---N-AVIEEITELSEAGRPVLVG 634 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----EE-ECCCCCCcceecCCCeEecC-HHHHH---H-HHHHHHHHHHHCCCCEEEE
Confidence 45688888754 44454444432 33 33456664322110000001 11111 1 1223444555789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
+.|-...+.+++.|....... . +.+|.....+-..|-++=+.|
T Consensus 635 T~SVe~SE~lS~~L~~~gI~H-----------------------------------~--VLNAK~h~~EAeIVA~AG~~G 677 (1112)
T PRK12901 635 TTSVEISELLSRMLKMRKIPH-----------------------------------N--VLNAKLHQKEAEIVAEAGQPG 677 (1112)
T ss_pred eCcHHHHHHHHHHHHHcCCcH-----------------------------------H--HhhccchhhHHHHHHhcCCCC
Confidence 999999998888886532110 0 112222233344444333333
Q ss_pred CccEEEeccccccccCCC--------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc-H--
Q 043190 168 LLKVLVCTATLAWGVNLP--------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-L-- 236 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp--------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~-- 236 (1492)
.|-|||+.++||-|+- .=.+|| ||.+.+... --.|..|||||-| ..|.+-.+.+-+| +
T Consensus 678 --aVTIATNMAGRGTDIkLg~~V~e~GGL~VI-gTerheSrR------ID~QLrGRaGRQG--DPGsS~f~lSLEDdLmr 746 (1112)
T PRK12901 678 --TVTIATNMAGRGTDIKLSPEVKAAGGLAII-GTERHESRR------VDRQLRGRAGRQG--DPGSSQFYVSLEDNLMR 746 (1112)
T ss_pred --cEEEeccCcCCCcCcccchhhHHcCCCEEE-EccCCCcHH------HHHHHhcccccCC--CCCcceEEEEcccHHHH
Confidence 6889999999999984 223444 344332211 1356889999988 6788877776443 2
Q ss_pred -------HHHHHHhc--CCCccccchhHh
Q 043190 237 -------AYYLRLLT--SQLPIESQFISS 256 (1492)
Q Consensus 237 -------~~~~~~~~--~~~~ies~l~~~ 256 (1492)
..+...++ +..+|++.+...
T Consensus 747 ~Fgs~ri~~~m~~~g~~ege~I~~~~i~k 775 (1112)
T PRK12901 747 LFGSERIAKVMDRMGLKEGEVIQHSMISK 775 (1112)
T ss_pred hhCcHHHHHHHHHcCCCCCCccccHHHHH
Confidence 22222222 345788776543
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0046 Score=78.53 Aligned_cols=86 Identities=9% Similarity=0.122 Sum_probs=49.0
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. ++ .-+..||+-...+--.+-.. ...+. ..+.+.+.+....|.|+||-
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~----Vv-~IPTnkP~~R~D~~d~vy~t-~~eK~----~Ai~~ei~~~~~~GrPVLVG 455 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLD----VV-VIPPNKPLARKDFNDLVYLT-AEEKY----AAIITDIKECMALGRPVLVG 455 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCC----EE-ECCCCCCcccccCCCeEEcC-HHHHH----HHHHHHHHHHHhCCCCEEEE
Confidence 56789999864 44455555443 33 33556665432210000011 11111 11223444455789999999
Q ss_pred EechHHHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~ 104 (1492)
+.|-...+.+++.|.+.
T Consensus 456 T~SVe~SE~ls~~L~~~ 472 (913)
T PRK13103 456 TATIETSEHMSNLLKKE 472 (913)
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 99999999999888754
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.025 Score=71.60 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=48.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. ++ .-+..||+-...+--.+-.. ...+. . .+.+.+.+....|.|+||-
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~----Vv-~IPTnkP~~R~d~~d~vy~t-~~~K~---~-Ai~~ei~~~~~~GrPVLIg 445 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLE----VT-VIPTNRPRRRQDWPDQVYKT-EIAKW---R-AVANETAEMHKQGRPVLVG 445 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCc----EE-EcCCCCCeeeecCCCeEEcC-HHHHH---H-HHHHHHHHHHhCCCCEEEe
Confidence 57789999754 33455555443 22 33456664432211001111 11111 1 1223444445789999999
Q ss_pred EechHHHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~ 104 (1492)
+.|-...+.+++.|.+.
T Consensus 446 T~SVe~SE~ls~~L~~~ 462 (939)
T PRK12902 446 TTSVEKSELLSALLQEQ 462 (939)
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 99999999999888754
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=77.02 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSAD 784 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~ 784 (1492)
..++|.|..|||||+++.-.+.+......+.+++++++..+|.....+.+...... ....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------------KLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc--------------------chhh
Confidence 35799999999999998765555422335789999999999988776666543200 0011
Q ss_pred EEEECchhhhHhhhcccCccccCcccEEEEecccccCC
Q 043190 785 IIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 785 Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
..+..+..+..-.. ........+++|||||||.+..
T Consensus 62 ~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 22333333221111 1223356889999999998854
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0014 Score=68.55 Aligned_cols=129 Identities=25% Similarity=0.348 Sum_probs=75.1
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++.+|||++|.+..+.+...+.... ...++.++.. ...++..+++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~--------------------------------~~~~~~v~~q--~~~~~~~~l~~ 54 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERL--------------------------------EEKGIPVFVQ--GSKSRDELLEE 54 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS---------------------------------E-ETSCEEES--TCCHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhc--------------------------------ccccceeeec--CcchHHHHHHH
Confidence 4889999999998888776552210 0112223333 35678899999
Q ss_pred HhcCCceEEEecc--ccccccCCCC--c-EEEEecceeeeCcc---------------CccccC--C--HHHHHHhhccc
Q 043190 997 FANNKIQVLVCTS--TLAWGVNLPA--H-LVIIKGTEYYDGKT---------------KRYVDF--P--ITDILQMMGRA 1052 (1492)
Q Consensus 997 f~~g~~~vLvaT~--~l~~Gvdip~--~-~~VI~~~~~~~~~~---------------~~~~~~--~--~~~~~Qr~GRa 1052 (1492)
|+++.-.||+|+. .+.+|||+|+ . .+||.|-++-.+.. ..+.++ + ...+.|.+||+
T Consensus 55 ~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~ 134 (167)
T PF13307_consen 55 FKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRL 134 (167)
T ss_dssp HCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC
T ss_pred HHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcc
Confidence 9999999999999 9999999996 3 45666655433211 000111 1 45789999999
Q ss_pred CCCCCCCceEEEEEecCCcHHHHHHhhc
Q 043190 1053 GRPQYDQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1053 gR~g~~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
-|.. ++.|..+++-..-....|.+.+.
T Consensus 135 iR~~-~D~g~i~llD~R~~~~~y~~~l~ 161 (167)
T PF13307_consen 135 IRSE-DDYGVIILLDSRFLSKRYGKYLP 161 (167)
T ss_dssp --ST-T-EEEEEEESGGGGGHHHHHH-T
T ss_pred eecc-CCcEEEEEEcCccccchhhhcCc
Confidence 9964 45677666644433344544443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=63.06 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHL 728 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~ 728 (1492)
+++.++|.||+|+|||.+....+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999876555443
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.041 Score=71.07 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=47.8
Q ss_pred ccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhcc
Q 043190 489 PLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGY 542 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~ 542 (1492)
-|+.|| +||+..++.|-.+--|+.++.+++.+++.+++|+++.|+.|.++++.
T Consensus 758 ~L~~lP-gI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 758 FLLKLP-GVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHHCC-CCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 377899 99999999998864599999999999999999988999999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=76.45 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q 749 (1492)
.+++-|.+++..+. .++.++|.|+.|+|||++. -.++..+.... ...++.++||-..|..
T Consensus 323 ~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 323 GLSEEQKQALDTAI-QHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred CCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 48999999999987 6779999999999999865 34455444321 2678889999876653
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.015 Score=62.30 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=69.5
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEE--EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVV--YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l--~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
+.+++.||||+|||+...-...+...+ +.++. -+=..|.=|.++.+.+.+.+ |+.+.......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 357899999999998776555444433 33333 33346777777777766654 65544322111
Q ss_pred CcEEEECchh-hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 783 ADIIISTPEK-WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~-l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.|.. +...++. ...++.++|+||-+-+ .+.-...+..++.+.....+.-.++.+|||...
T Consensus 67 ------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr-----~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 ------DPAEIAREALEK----FRKKGYDLVLIDTAGR-----SPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------CHHHHHHHHHHH----HHHTTSSEEEEEE-SS-----SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hhHHHHHHHHHH----HhhcCCCEEEEecCCc-----chhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 1111 1122221 1124578999999863 333444555555555444556677888999854
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.023 Score=67.25 Aligned_cols=126 Identities=15% Similarity=0.214 Sum_probs=68.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEE--EcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVY--IAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~--i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
+..+++.||||+|||+.+.-.+...... ..+.++.+ +=+.|.-+.++...|.+. +|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~----lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI----MGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhc----CCcceEe-----------
Confidence 4678999999999998765443332211 12334433 334566666555554443 2544321
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc-eEEEEEcCCCCCh
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA-VRFIGLSTALANA 858 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~-~~ii~lSATl~~~ 858 (1492)
+-+++.+...+.+ +.+.++|+||++.....+ .. -+.+++.+......+ -.++.+|||.. .
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~ 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK-T 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-H
Confidence 1134444443333 357899999999866321 11 144444443333323 46788999975 4
Q ss_pred HHHHH
Q 043190 859 GDLAD 863 (1492)
Q Consensus 859 ~~~~~ 863 (1492)
.++.+
T Consensus 300 ~~~~~ 304 (388)
T PRK12723 300 SDVKE 304 (388)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0052 Score=72.36 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
+|+-|.+++.. .+.+++|.|..|||||.+...-+...+... +..+++++++|++.|.++.+++...+...
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 57889999987 367999999999999999887777766543 45789999999999999988888766543
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.015 Score=74.78 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=52.9
Q ss_pred EEEEcCCCChhhHHHHHHHH----------------------h----CCCccEEEeccccccccCCCcEEEEEeccceec
Q 043190 145 VGVHHAGMLRSDRGLTERLF----------------------S----EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYD 198 (1492)
Q Consensus 145 v~~hhagl~~~~R~~ve~~f----------------------~----~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~ 198 (1492)
+.++|+--+..+|..+|+.. + .+...|+|||.+.+.|+|+...-+|.. ..
T Consensus 789 ~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~~-~~--- 864 (1110)
T TIGR02562 789 LCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIAD-PS--- 864 (1110)
T ss_pred EEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeeec-cC---
Confidence 77789999999999888664 1 257899999999999999976544441 11
Q ss_pred CCCCCcccCchhhhhhccCCCCCCccc
Q 043190 199 PKAGGWRDLGMLDIFGRAGRPQFDRSG 225 (1492)
Q Consensus 199 ~~~~~~~~~~~~~~~GRAGR~~~d~~G 225 (1492)
...+.+|++||.-|.|....+
T Consensus 865 ------~~~sliQ~aGR~~R~~~~~~~ 885 (1110)
T TIGR02562 865 ------SMRSIIQLAGRVNRHRLEKVQ 885 (1110)
T ss_pred ------cHHHHHHHhhcccccccCCCC
Confidence 223589999999998865543
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.022 Score=66.67 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=66.4
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
..+..+++.||||+|||+.+...........+..++.++.. .|.-+.++...|.+.+ |+.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~----------- 199 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKIL----GVPVHA----------- 199 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHc----CCceEe-----------
Confidence 35789999999999999977655544433322234444432 2444555555554433 443322
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+.+++.+...+.+ +.+.++|+||++-... +...+...+..+. ......-+++.+|||...
T Consensus 200 -------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 200 -------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLLLNATSHG 259 (374)
T ss_pred -------cCCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEEecCccCh
Confidence 2233333333333 4456899999996431 2222223333332 222234567888999744
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.009 Score=66.92 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=50.3
Q ss_pred hhcCCCCCCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La 747 (1492)
..+|+.-.|..|+-|+..+++.+ +-|.+.|+-|||||+.++.+.+.... .....++++.=|+..+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 55688888899999999998443 34677899999999999887776543 33457888888886643
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.021 Score=74.15 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
.|++-|.+++..++.+++.++|.|+.|+|||+..- ++...+.. .+.+++.++||-..|..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~-~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA-AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh-CCCeEEEEeCcHHHHHH
Confidence 48999999999988656788999999999998643 34444433 37889999999765543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0073 Score=76.83 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..+++.|.+++..++.+...++|.||+|+|||....-.+.+.+.. +.++++++|+...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 468999999999988555789999999999998776555555543 66999999999999888777654
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.019 Score=75.49 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
.|++-|.+++..++.+++.++|.|+.|+|||++ +-++.+.+.. .+.+++.++||-..|..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-AGYEVRGAALSGIAAEN 405 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-cCCeEEEecCcHHHHHH
Confidence 489999999999885566789999999999986 3445554443 47889999999765543
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=72.17 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~ 751 (1492)
+.-|+=|.+.||+|||.||+-.|+..-+..+-.+.+++||+.|.-..++
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~ 121 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVF 121 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhH
Confidence 3347889999999999999999998776666789999999998765533
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.017 Score=71.66 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHH---HHhccC--------------------------
Q 043190 685 NFSHFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAML---HLFNTQ-------------------------- 732 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il---~~l~~~-------------------------- 732 (1492)
+|. |+|.|...+..++ ....+.++.+|||+|||++.+-..+ +.....
T Consensus 19 P~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s 97 (945)
T KOG1132|consen 19 PFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKS 97 (945)
T ss_pred cCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCch
Confidence 444 7999988666543 4667899999999999986654333 333200
Q ss_pred -----C------CceEEEEcccHHHHHHHHHHHHH
Q 043190 733 -----S------DMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 733 -----~------~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+ -+++.|-.-|..-..|+.+++++
T Consensus 98 ~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 98 EEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred hhhcCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 1 24678888888878888888876
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.036 Score=72.32 Aligned_cols=186 Identities=15% Similarity=0.122 Sum_probs=102.2
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC--C-------chhHH--HHHhhHHHHHHHHH
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE--P-------NFAAR--NELLSEICYKKVVD 76 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~--~-------~~~~~--~~~~~~~~~~~~~~ 76 (1492)
--+|++||||+-.+.+++.|+...+... ....++|-++....+.. + .+..+ ...+.. +.+.+.+
T Consensus 442 ~svil~SgTL~p~~~~~~~Lg~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~-l~~~i~~ 516 (705)
T TIGR00604 442 RSVILASGTLSPLDAFPRNLGFNPVSQD----SPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRN-LGELLVE 516 (705)
T ss_pred CEEEEecccCCcHHHHHHHhCCCCccce----ecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHH-HHHHHHH
Confidence 3589999999999999999987522111 11233343332222211 1 11111 111111 2223333
Q ss_pred HHh-cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChh
Q 043190 77 SLR-QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRS 155 (1492)
Q Consensus 77 ~~~-~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~ 155 (1492)
..+ -++.+|||.+|-..-+.++..+.+..... .+.. .+.+-+-.-+. .
T Consensus 517 ~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~-------------------~i~~----------~k~i~~E~~~~--~ 565 (705)
T TIGR00604 517 FSKIIPDGIVVFFPSYSYLENIVSTWKEMGILE-------------------NIEK----------KKLIFVETKDA--Q 565 (705)
T ss_pred HhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHH-------------------HHhc----------CCCEEEeCCCc--c
Confidence 333 35679999999998888887765421100 0000 00122211121 5
Q ss_pred hHHHHHHHHhC----CCccEEEec--cccccccCCCc---EEEEEeccceecCCC----------------CCc---cc-
Q 043190 156 DRGLTERLFSE----GLLKVLVCT--ATLAWGVNLPA---HTVVIKGTQLYDPKA----------------GGW---RD- 206 (1492)
Q Consensus 156 ~R~~ve~~f~~----g~i~vlvaT--~tla~Gvnlp~---~~vVI~~~~~~~~~~----------------~~~---~~- 206 (1492)
++..+.+.|+. |.-.||+|+ ..++.|||+|+ +.|||-|...-++.. +++ -.
T Consensus 566 ~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 645 (705)
T TIGR00604 566 ETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEF 645 (705)
T ss_pred hHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 67888888864 455699999 89999999986 678887754322211 011 00
Q ss_pred ---CchhhhhhccCCCCCCccceEEEE
Q 043190 207 ---LGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 207 ---~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
..+.|-+||+=|...| .|..+++
T Consensus 646 ~a~~~v~QaiGR~IR~~~D-~G~iill 671 (705)
T TIGR00604 646 DAMRAVNQAIGRVIRHKDD-YGSIVLL 671 (705)
T ss_pred HHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1234678999998765 6765555
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.047 Score=70.38 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcC-Ccc-ccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCC--hhh
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYE-DLE-VFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGML--RSD 156 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~--~~~ 156 (1492)
+++++|||.+|..|....+.|.+...... ... ..+...... ..+ +...+.+.. .+ +.. .+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~-~~~---------~~~~~~~~~----~~-~~~~~~~~ 578 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDD-AEI---------RDYNKHIRT----KF-DKSDGFEI 578 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccch-hHH---------HHHHHHhcc----cc-ccchhhhH
Confidence 47899999999999999988876544321 110 011000000 000 001111110 01 011 123
Q ss_pred HHHHHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCC
Q 043190 157 RGLTERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219 (1492)
Q Consensus 157 R~~ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~ 219 (1492)
+..+.+.|++ +.+++||+++-|..|.|.|...+++ .| .++.....+|++||+-|+
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy-----ld---Kplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY-----LD---KPLKYHGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEE-----Ee---ccccccHHHHHHHHhccc
Confidence 4567888976 7899999999999999999988887 33 223444589999999995
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.029 Score=65.13 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=51.5
Q ss_pred hhcCCCCCCHHHHHHHH---hhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFH---ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~---~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
-+|+|...+|-|-+-.. ..++.+.+.++.+|+|+|||.+.+-.++...... ...+.+|..-|..=++....+++
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 45788889999988543 4566778999999999999987665555543332 35688888777654444444443
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0061 Score=63.75 Aligned_cols=124 Identities=22% Similarity=0.249 Sum_probs=73.2
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++.+|||++|.+..+.+...+.+... ..++.+... ....+..
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~-----------------------------------~~~~~v~~q--~~~~~~~ 50 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE-----------------------------------EKGIPVFVQ--GSKSRDE 50 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc-----------------------------------cccceeeec--CcchHHH
Confidence 357899999999998888776643211 011223332 3667888
Q ss_pred HHHHHhCCCccEEEecc--ccccccCCC---cEEEEEeccceecCCCC---------------Cccc-------Cchhhh
Q 043190 160 TERLFSEGLLKVLVCTA--TLAWGVNLP---AHTVVIKGTQLYDPKAG---------------GWRD-------LGMLDI 212 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~--tla~Gvnlp---~~~vVI~~~~~~~~~~~---------------~~~~-------~~~~~~ 212 (1492)
+.+.|+++.-.||+|+. .++.|||+| ...|||-|...-.+..- .+.. ....|-
T Consensus 51 ~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa 130 (167)
T PF13307_consen 51 LLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQA 130 (167)
T ss_dssp HHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhh
Confidence 88999999999999999 999999999 56788877554333210 0111 113457
Q ss_pred hhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 213 FGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 213 ~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+||+=|...| .|..+++-..-....|.+
T Consensus 131 ~GR~iR~~~D-~g~i~llD~R~~~~~y~~ 158 (167)
T PF13307_consen 131 IGRLIRSEDD-YGVIILLDSRFLSKRYGK 158 (167)
T ss_dssp HHCC--STT--EEEEEEESGGGGGHHHHH
T ss_pred cCcceeccCC-cEEEEEEcCccccchhhh
Confidence 8999997654 576666644333334443
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.021 Score=68.15 Aligned_cols=124 Identities=22% Similarity=0.352 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHhhh-----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHH-H-HHHHHHhhh
Q 043190 688 HFNPIQTQIFHILY-----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER-M-NDWKDRLVS 760 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~-----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~-~-~~~~~~~~~ 760 (1492)
+||+-|++++..++ ..+.++.|.||-|+|||.++- .+...+.. .+..+++++||-..|..+ - ..+...|
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~hs~f-- 76 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTIHSFF-- 76 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc-ccceEEEecchHHHHHhccCCcchHHhc--
Confidence 47889999988772 367899999999999998753 34444443 467899999997755543 1 1111111
Q ss_pred ccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhh
Q 043190 761 QLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~ 840 (1492)
++.+.. . ..... .+++-. .....+..++++||||+=+++. ..++.+-.+++.+..
T Consensus 77 --~i~~~~-------~----~~~~~---~~~~~~------~~~~~l~~~~~lIiDEism~~~---~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 77 --GIPINN-------N----EKSQC---KISKNS------RLRERLRKADVLIIDEISMVSA---DMLDAIDRRLRDIRK 131 (364)
T ss_pred --Cccccc-------c----ccccc---cccccc------hhhhhhhhheeeecccccchhH---HHHHHHHHhhhhhhc
Confidence 221110 0 00000 221111 1234477899999999998843 355566566665543
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.025 Score=57.72 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=25.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
+..+++.||+|+|||..+.... ..+.. .+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~-~~~~~-~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA-NELFR-PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHhhc-CCCCeEEEehh
Confidence 6789999999999998654433 33322 24556665544
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0064 Score=51.06 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=45.5
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
.|.++||+|+..+++|.+.|+.|+++|...+.+++..+ +++...+.|...++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999999999999999998887 66777788877654
|
... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.14 Score=59.52 Aligned_cols=126 Identities=14% Similarity=0.247 Sum_probs=75.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCce-EEEEcc-cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMK-VVYIAP-LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~-~l~i~P-~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
++.+.+.||||.|||+...-...+.....+..+ .++..- .|.=|.++.+.+.+. +|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~i----m~vp~--------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADI----MGVPL--------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHH----hCCce---------------
Confidence 789999999999998865544444432222333 344444 455566666654443 35443
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHH
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDL 861 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~ 861 (1492)
.++-+|.-|...+.. +.+.++|.||=+- +++.=...++.|+.+.......-..+.+|||. ..+++
T Consensus 264 ---~vv~~~~el~~ai~~------l~~~d~ILVDTaG-----rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dl 328 (407)
T COG1419 264 ---EVVYSPKELAEAIEA------LRDCDVILVDTAG-----RSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDL 328 (407)
T ss_pred ---EEecCHHHHHHHHHH------hhcCCEEEEeCCC-----CCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHH
Confidence 244566666554443 5677899999875 33333345566665555444555677889996 55555
Q ss_pred HH
Q 043190 862 AD 863 (1492)
Q Consensus 862 ~~ 863 (1492)
.+
T Consensus 329 ke 330 (407)
T COG1419 329 KE 330 (407)
T ss_pred HH
Confidence 54
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.058 Score=60.38 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=26.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
..+.|++++||+|+|||..+.......... +.+++|+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~ 132 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFA 132 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhh
Confidence 467899999999999998776544444432 5566554
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.058 Score=71.48 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|++-|.+++..+..+++-++|.|+.|+|||++.- ++.+.+.. .+.+++-++||-.-|... .+ ..|+...
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~-~G~~V~g~ApTgkAA~~L----~e----~~Gi~a~ 450 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA-AGYRVVGGALAGKAAEGL----EK----EAGIQSR 450 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH-cCCeEEEEcCcHHHHHHH----HH----hhCCCee
Confidence 48999999999886567789999999999998643 34444433 478999999997765442 22 1143322
Q ss_pred EEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceE
Q 043190 768 EMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR 847 (1492)
Q Consensus 768 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 847 (1492)
|-.+|. ++-......+..-+++||||+.+++. ..+..++.... ....+
T Consensus 451 ---------------------TIas~l--l~~~~~~~~l~~~~vlVIDEAsMv~~---~~m~~Ll~~~~------~~gar 498 (1102)
T PRK13826 451 ---------------------TLSSWE--LRWNQGRDQLDNKTVFVLDEAGMVAS---RQMALFVEAVT------RAGAK 498 (1102)
T ss_pred ---------------------eHHHHH--hhhccCccCCCCCcEEEEECcccCCH---HHHHHHHHHHH------hcCCE
Confidence 222211 01001123356678999999999853 23444444332 23567
Q ss_pred EEEEc
Q 043190 848 FIGLS 852 (1492)
Q Consensus 848 ii~lS 852 (1492)
+|++-
T Consensus 499 vVLVG 503 (1102)
T PRK13826 499 LVLVG 503 (1102)
T ss_pred EEEEC
Confidence 77764
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.16 Score=59.03 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=62.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
.+.+.+.||||+|||+.+........ . .+.++.++. |.|.-+.++...+.+. .|+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~-~GkkVglI~aDt~RiaAvEQLk~yae~----lgipv~-------------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-G-KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI-------------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-H-cCCcEEEEecCCcchHHHHHHHHHhhh----cCCcEE--------------
Confidence 46889999999999987655444433 2 244554443 4454444444443332 133222
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...+|..+...+..... -.++++|+||-+=....+ ...+..+..+.....+...++.+|||...
T Consensus 301 ----v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 ----AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ----ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 12356555444433111 125789999988643211 12233333332222334445668998643
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=59.93 Aligned_cols=124 Identities=15% Similarity=0.234 Sum_probs=64.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
...+++.||+|+|||+.....+. .+.. .+.+++++.. .|.-+.++...+...+ |+.+.. +....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~-~l~~-~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~------ 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY-YLKK-NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA------ 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHHH-cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC------
Confidence 35688999999999986554333 3333 3556666653 3454554455444433 554432 11111
Q ss_pred CCcEEEECchh-hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEK-WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.|.. +...++.. .....++|+||.++.+..+ ..++..++.+.....+...++.++||..+
T Consensus 206 -------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 -------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTD-----ANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred -------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCc-----HHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1111 11111110 1235679999999976322 12233333333333456777888998754
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=69.92 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
+..+|..|++|+..++...+-.+|.|=+|+|||+.....+--... .++++|..+=|...+.-+.-.++. . |+.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~--~gkkVLLtsyThsAVDNILiKL~~----~-~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA--LGKKVLLTSYTHSAVDNILIKLKG----F-GIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH--cCCeEEEEehhhHHHHHHHHHHhc----c-Ccc
Confidence 457999999999998877778889999999999876544433333 389999999998877766655543 2 332
Q ss_pred EEEEcCCC--Ccc------------------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 766 MVEMTGDY--TPD------------------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 766 v~~~~g~~--~~~------------------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
+.-+..+. .++ ......+.|+.||-=-+...+ ...+.++++|||||-.+
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl------f~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL------FVNRQFDYCIIDEASQI 808 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh------hhccccCEEEEcccccc
Confidence 22221110 000 122346788888743221111 11346899999999865
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.052 Score=54.64 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=57.7
Q ss_pred EeecCCCCHHHHHHHHHHHhcCC-ceEEEeccccccccCCCCc---EEEEecceeeeCcc---------------C-ccc
Q 043190 979 GLHHAGLNDKDRSLVEELFANNK-IQVLVCTSTLAWGVNLPAH---LVIIKGTEYYDGKT---------------K-RYV 1038 (1492)
Q Consensus 979 ~~~h~~l~~~~R~~v~~~f~~g~-~~vLvaT~~l~~Gvdip~~---~~VI~~~~~~~~~~---------------~-~~~ 1038 (1492)
.++.-+.+..+...+++.|++.. ..||++|..+++|||+|+. .+||.|-++-.+.. . .+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 44455566666788999998754 3799999889999999974 45666655432221 0 011
Q ss_pred c--CC--HHHHHHhhcccCCCCCCCceEEEEE
Q 043190 1039 D--FP--ITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 1039 ~--~~--~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
. ++ ...+.|.+||+-|.. ++.|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 1 12 457899999999965 456765554
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.08 Score=56.74 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
|.-.++.||+|+|||+.+...+.+.... +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 3457899999999999887776665443 678888866
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.18 Score=62.54 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|+|+|.+.+..+. .++-.++..+=..|||.+....++......++..+++++|++.-|..+++.++..+..
T Consensus 60 L~p~Q~~i~~~~~-~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 60 MRDYQKDMLKIMH-KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CcHHHHHHHHHHh-cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 8899999988875 4555578888899999987754443332335679999999999999998888765543
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.025 Score=66.91 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=79.2
Q ss_pred EecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch-------hccC
Q 043190 709 LGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL-------MALL 781 (1492)
Q Consensus 709 i~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~-------~~~~ 781 (1492)
..+.||||||++..-.|+....+ +-...++.|..-.........+...+....-.+-.+..+|..... ....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 35789999999988888887665 346677777776666555444432221110000000111111111 0223
Q ss_pred CCcEEEECchhhhH-hhhcccCc---cccCcccE-EEEecccccCCC-C---------ccHHHHHHHHHHHhhhccCCce
Q 043190 782 SADIIISTPEKWDG-ISRNWHSR---NYVKKVGL-MILDEIHLLGAE-R---------GPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~-l~~~~~~~---~~l~~i~l-iViDEaH~l~~~-~---------g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
...|.++|.+.|-. +.+..... ..+.+.++ .+-||+|+++.. . -..|+..+.. .-...++-
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~l----a~~~nkd~ 156 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKL----ALEQNKDN 156 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHH----HHhcCCCc
Confidence 45899999998743 44432222 23445554 466999998531 1 1123322211 11224455
Q ss_pred EEEEEcCCCCChHHHHH
Q 043190 847 RFIGLSTALANAGDLAD 863 (1492)
Q Consensus 847 ~ii~lSATl~~~~~~~~ 863 (1492)
-++..|||++...++..
T Consensus 157 ~~lef~at~~k~k~v~~ 173 (812)
T COG3421 157 LLLEFSATIPKEKSVED 173 (812)
T ss_pred eeehhhhcCCccccHHH
Confidence 66778999886555544
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.12 Score=58.24 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
.+++.|..++.. ..+.++|+++.||+|+|||..+......... .+.+++|+. ...|..+
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeee-HHHHHHH
Confidence 355666666643 3457789999999999999876543333333 255666654 3445444
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=64.55 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=80.1
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+.+||||.+..+|+.++..+.+..++.+.. =+...- |=....+..|-
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~--------------------------------~a~~IT-~d~~~~q~~Id 473 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGR--------------------------------YAMKIT-GDAEQAQALID 473 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCc--------------------------------eEEEEe-ccchhhHHHHH
Confidence 579999999999999999887765431100 012222 22334445555
Q ss_pred HHHhCC-CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCcc-----ceEEEEeCCcc
Q 043190 162 RLFSEG-LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRS-----GEGIIITSHDK 235 (1492)
Q Consensus 162 ~~f~~g-~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~-----G~~i~~~~~~~ 235 (1492)
+.+.+. -=+|.++.+.|..|||+|-+..++ |+.. -.+..-|.||+||+-|.-.+-. -.-+.+.+--+
T Consensus 474 ~f~~ke~~P~IaitvdlL~TGiDvpev~nlV-----F~r~--VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 474 NFIDKEKYPRIAITVDLLTTGVDVPEVVNLV-----FDRK--VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHHhcCCCCceEEehhhhhcCCCchheeeee-----ehhh--hhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 555533 446778889999999998877666 3321 1245569999999999854433 23444444333
Q ss_pred HHHHHHHhcCCCccccchhHhHH
Q 043190 236 LAYYLRLLTSQLPIESQFISSLK 258 (1492)
Q Consensus 236 ~~~~~~~~~~~~~ies~l~~~l~ 258 (1492)
...|.+ ..+++.+......+.
T Consensus 547 ~~~~~~--~~~~~~e~~~~~~l~ 567 (875)
T COG4096 547 NTEYFE--MDPEMREGRVRVSLE 567 (875)
T ss_pred hhhhhc--cCcccccccccchHH
Confidence 333332 344454444444333
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.097 Score=63.61 Aligned_cols=136 Identities=14% Similarity=0.196 Sum_probs=82.7
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHH-HHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC-C
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKA-IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL-S 782 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~-La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~-~ 782 (1492)
-.++.|..|||||.+..+.++..+... ++.+++++-|+.. |-..++..+...+... |+....-..+......... +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCCC
Confidence 467899999999999888877766664 6789999999876 6667777777666554 5432111111110111112 3
Q ss_pred CcEEEECc-hhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 783 ADIIISTP-EKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tp-e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..|++..- +....+. ....+.++.+|||..+.. ..++.+..|++.- .....+.+|.++..
T Consensus 82 ~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~~-----~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLRET-----GGKKFIIFSSNPES 142 (396)
T ss_pred eEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhhcc-----CCccEEEEEcCcCC
Confidence 44555443 2221111 123468999999998742 3777888776531 12124778888765
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.35 Score=59.62 Aligned_cols=154 Identities=15% Similarity=0.249 Sum_probs=94.0
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHH-HhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH-LFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~-~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..++..|+...++.-= +. .+ ..+-.++..|=-.|||.+.. +++. .+...++.+++|++|.+..+...++++..
T Consensus 233 ~~lk~~Fdi~~~s~~~---~~-~f-kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 233 RFLRTVFNTPLFSDAA---VR-HF-RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred HHHHHHcCCccccHHH---HH-Hh-hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 4456666766665432 22 33 45677889999999999766 4444 34334689999999999999999999998
Q ss_pred HhhhccCCE-EEEEcCCCCcchhccCC--CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 757 RLVSQLGKE-MVEMTGDYTPDLMALLS--ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 757 ~~~~~~g~~-v~~~~g~~~~~~~~~~~--~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.+..+.+.. +....|+ .....-..+ ..|.+++. ++. +...=..++++|||||+.+.+ ..+..++-
T Consensus 307 ~le~~f~~~~v~~vkGe-~I~i~f~nG~kstI~FaSa-------rnt-NsiRGqtfDLLIVDEAqFIk~---~al~~ilp 374 (738)
T PHA03368 307 RLRQWFGASRVDHVKGE-TISFSFPDGSRSTIVFASS-------HNT-NGIRGQDFNLLFVDEANFIRP---DAVQTIMG 374 (738)
T ss_pred HHhhhcchhheeeecCc-EEEEEecCCCccEEEEEec-------cCC-CCccCCcccEEEEechhhCCH---HHHHHHHH
Confidence 877653222 2223342 110011111 24555532 110 101113789999999998843 34555554
Q ss_pred HHHHhhhccCCceEEEEEcCCC
Q 043190 834 RMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.+. ..+.++|.+|.|-
T Consensus 375 ~l~------~~n~k~I~ISS~N 390 (738)
T PHA03368 375 FLN------QTNCKIIFVSSTN 390 (738)
T ss_pred HHh------ccCccEEEEecCC
Confidence 332 3488899999884
|
|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.015 Score=48.87 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=46.0
Q ss_pred ccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 489 PLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.|.++| +||+..+++|.+.|+ |++++.+.+++++.++-| +++.++++.+.++
T Consensus 6 ~L~~I~-Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIP-GIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTST-TCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCC-CCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 467899 999999999999999 999999999999999866 6888888887764
|
... |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.23 Score=60.17 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=63.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.+++.||||+|||+.....+........+.++.++. |.|.-+.++...|.+.+ |+.+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM----GIPVE------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh----CCceE-------------
Confidence 356889999999999987664444332111244554443 34554555555555432 33221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
.+.+++.+...++. +.+.++|+||.+-....+ ...++.+...+.. .......++.+|||..
T Consensus 283 -----~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d-~~~~~~L~~ll~~---~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 283 -----VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRD-KRLIEELKALIEF---SGEPIDVYLVLSATTK 343 (424)
T ss_pred -----ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCC-HHHHHHHHHHHhc---cCCCCeEEEEEECCCC
Confidence 11244444444443 346799999999654211 1122222222220 1123345677899864
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.044 Score=71.80 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..|||-|.+++.. .+.+++|.|..|||||.+...-+...+... +..++++++.|+..|.++.+++.+.+ |.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~----~~ 75 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL----GT 75 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh----cc
Confidence 4599999999875 356899999999999998877776666432 45789999999999998877776643 21
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
. ...+.|+|...+ ..+++.......+. -.+-|+|+.+
T Consensus 76 ~----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 113 (715)
T TIGR01075 76 S----------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDD 113 (715)
T ss_pred c----------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 0 125788999886 34555422111111 1245677765
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.2 Score=54.98 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=58.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSAD 784 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~ 784 (1492)
.+++.||+|+|||-. +.++...+. ..++.+++|+... +........ +..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~----~~~------------------------ 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADA----LRD------------------------ 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHH----HHT------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHH----HHc------------------------
Confidence 589999999999984 445555443 3456788887653 322222211 110
Q ss_pred EEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 785 IIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 785 Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...+ .+... +...++++||.+|.+.... ..-+.+...+..+.. .+.++|+.|...|.
T Consensus 86 ---~~~~---~~~~~------~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~---~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 ---GEIE---EFKDR------LRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE---SGKQLILTSDRPPS 142 (219)
T ss_dssp ---TSHH---HHHHH------HCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH---TTSEEEEEESS-TT
T ss_pred ---ccch---hhhhh------hhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh---hCCeEEEEeCCCCc
Confidence 0111 22222 4578899999999986432 123444444443332 35678888766654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.41 Score=53.12 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhhh------cC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 689 FNPIQTQIFHILY------HT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 689 l~~~Q~~~i~~~~------~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.++.|.+++..+. .. ...+++.|++|+|||..+. ++...+.. .+..++|+
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~-aia~~l~~-~g~~v~~i 133 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAA-AICNELLL-RGKSVLII 133 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHh-cCCeEEEE
Confidence 3455666554432 11 2479999999999998765 34444433 25566665
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.023 Score=70.06 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=85.8
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+-++||.+.=.....+..++...-.-. .+-.+.+-..|.-+...+.+.|.
T Consensus 644 gailvflpgwa~i~~L~~~ll~~~~fg------------------------------~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 644 GAVLVFLPGWAEIMTLCNRLLEHQEFG------------------------------QANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred cceeeecCchHHhhhhhhhhhhhhhhc------------------------------cchhcccccchhhcccHhhhhcc
Confidence 458899888887777777665432110 01122355568889999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceec---CCCC--------CcccCchhhhhhccCCCCCCccceEEEE
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYD---PKAG--------GWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~---~~~~--------~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
+....|..++|++|.++...+.+.++..||...+.|- .+.. -.+..+..|+-|||||- +.|.|..+
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~l 770 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHL 770 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccc
Confidence 9999999999999999999999988666665332221 1111 12344567788888885 57999999
Q ss_pred eCCccHHHH
Q 043190 231 TSHDKLAYY 239 (1492)
Q Consensus 231 ~~~~~~~~~ 239 (1492)
|+.-..+.+
T Consensus 771 cs~arF~~l 779 (1282)
T KOG0921|consen 771 CSRARFEAL 779 (1282)
T ss_pred cHHHHHHHH
Confidence 975544433
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.19 Score=55.80 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~ 750 (1492)
..++++.||+|+|||..+.. +...+.. .+..++| ++..+|..++
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~-~g~~v~~-i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA-KGRSVIV-VTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH-cCCCeEE-EEHHHHHHHH
Confidence 46899999999999987654 4444333 2444544 4445555543
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.1 Score=66.96 Aligned_cols=113 Identities=22% Similarity=0.252 Sum_probs=80.1
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEE--EEcCCCChhhHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVG--VHHAGMLRSDRG 158 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~--~hhagl~~~~R~ 158 (1492)
++.+||||.-+....-+-+.|.+... ..|. -.-|..++.+|.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m------------------------------------psVtymRLDGSVpp~~R~ 1383 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM------------------------------------PSVTYMRLDGSVPPGDRQ 1383 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc------------------------------------CceeEEEecCCCCcHHHH
Confidence 46799999988877766666654311 1144 346999999999
Q ss_pred HHHHHHhCC-CccEE-EeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEG-LLKVL-VCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g-~i~vl-vaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+.+.|-++ .|.|| .+|-+-+.|+|| .|.+||+ ++ ..|.++.-+|-+-||-|-|.-+.=.++.+.+...
T Consensus 1384 kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF-----vE---HDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1384 KIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF-----VE---HDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred HHHHHhcCCCceeEEEEeeeccccccccCCCceEEE-----Ee---cCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 999999999 89987 566799999999 6777776 32 3344444577667777777555566776666555
Q ss_pred HH
Q 043190 236 LA 237 (1492)
Q Consensus 236 ~~ 237 (1492)
++
T Consensus 1456 LE 1457 (1549)
T KOG0392|consen 1456 LE 1457 (1549)
T ss_pred HH
Confidence 43
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.055 Score=62.31 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAI 746 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~L 746 (1492)
..+++.|.+.+..+...+.|++|+|+||||||+.. -+++..+.. .++.+++.+-.+.+|
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 34778899888888878889999999999999865 456665532 245688888877775
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.053 Score=70.04 Aligned_cols=90 Identities=23% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.||+-|.+++.. .+..++|.|..|||||.+...-+...+... +..++++++.|+..|.++.+++...+ |..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l----~~~ 74 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL----GRK 74 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh----Ccc
Confidence 489999999876 346788999999999999887777766432 35689999999999998777776543 210
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhh-hHhhhc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKW-DGISRN 799 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 799 (1492)
....+.|+|...| ..+++.
T Consensus 75 ---------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 75 ---------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred ---------------cccCcEEEcHHHHHHHHHHH
Confidence 0125789999886 344544
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=57.87 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=67.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
.++++.|+||.|||.+..-..-.+-.... -+-+++-+|...-....|..+-..+ |.... ..+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l----gaP~~--~~~------- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL----GAPYR--PRD------- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh----CcccC--CCC-------
Confidence 58999999999999976544333221111 1234555676665555555544444 22110 000
Q ss_pred cCCCcEEEECchh----hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 780 LLSADIIISTPEK----WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~----l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
+..+ ...+++. -.++++||||+|.+..+....-..++..+|.+...+ ...+|+.
T Consensus 129 ---------~~~~~~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v 186 (302)
T PF05621_consen 129 ---------RVAKLEQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV 186 (302)
T ss_pred ---------CHHHHHHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe
Confidence 1111 1234443 367899999999876666666777888888887655 4445544
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.075 Score=68.12 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..||+-|.+++.. ...+++|.|..|||||.+..--+...+... .+.++++++.++..|.++.+++...+ |
T Consensus 195 ~~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l----g- 266 (684)
T PRK11054 195 SPLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL----G- 266 (684)
T ss_pred CCCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc----C-
Confidence 3699999998874 345788999999999998776555444332 35699999999999998887776543 2
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhh-Hhhhc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWD-GISRN 799 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~-~l~~~ 799 (1492)
..+|-|+|-..|. .+++.
T Consensus 267 -----------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 267 -----------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred -----------------CCCcEEEeHHHHHHHHHHH
Confidence 0257889988873 44554
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=58.05 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHh------hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHI------LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~------~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.|......+..++.. .++.+.++++.||+|+|||..+.....+.+ . .+.-++.+++.+|+.++...
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEHHHHHHHHHHH
Confidence 344344455554443 235678999999999999998765544444 3 35556667777777765443
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.14 Score=64.88 Aligned_cols=65 Identities=28% Similarity=0.390 Sum_probs=48.3
Q ss_pred CCcEEEEEec---hHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 81 GHQAMVFVHS---RKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 81 ~~~~lVF~~s---r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
|.-.||||+. +..++.+++.|.++.. .+...|++ +
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi-------------------------------------~a~~~~a~-----~ 372 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGI-------------------------------------NAELIHAE-----K 372 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCc-------------------------------------eEEEeecc-----c
Confidence 4457999999 6667777776654321 25556663 3
Q ss_pred HHHHHHHhCCCccEEEec----cccccccCCCcE
Q 043190 158 GLTERLFSEGLLKVLVCT----ATLAWGVNLPAH 187 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT----~tla~Gvnlp~~ 187 (1492)
+...+.|..|+++|||.. .+|-||+|||.+
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 677889999999999875 579999999963
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.0098 Score=61.64 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=42.9
Q ss_pred EEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEE
Q 043190 708 LLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIII 787 (1492)
Q Consensus 708 li~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv 787 (1492)
++.|+=|-|||.+.-+++...+.. ...++++.+|+.+-+...++.....+... |.+............-...+..|-+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC---------------------------CCC--B
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccccccccccccceEEE
Confidence 578999999999877666555443 23689999999998877666554433222 2222000000000001112456777
Q ss_pred ECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 788 STPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 788 ~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
..|+.+. .. -...+++|||||=.+
T Consensus 79 ~~Pd~l~---~~------~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 79 VAPDELL---AE------KPQADLLIVDEAAAI 102 (177)
T ss_dssp --HHHHC---CT----------SCEEECTGGGS
T ss_pred ECCHHHH---hC------cCCCCEEEEechhcC
Confidence 7776432 11 123489999999876
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.27 Score=59.68 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=49.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.+.++||||+|||+.+...+......+.+.++.++. +.+..+.++... ++..+|+.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~----ya~iLgv~v~~------------ 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS----YGRQLGIAVHE------------ 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHH----hhcccCceeEe------------
Confidence 578999999999999987654444333332234454443 345444333332 22222332221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
..+++.+...+++ +.+.++|+||.+-..
T Consensus 413 ------a~d~~~L~~aL~~------l~~~DLVLIDTaG~s 440 (559)
T PRK12727 413 ------ADSAESLLDLLER------LRDYKLVLIDTAGMG 440 (559)
T ss_pred ------cCcHHHHHHHHHH------hccCCEEEecCCCcc
Confidence 1133445455543 346789999999754
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.072 Score=61.65 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~L 746 (1492)
..+++.|.+.+..+...+.+++++|+||||||+.. .+++..+. ..+..+++.+-.+.++
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34678899988887778899999999999999654 45554432 2245688888888775
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.2 Score=62.87 Aligned_cols=165 Identities=10% Similarity=0.111 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH-HHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN-DWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~-~~~~~~~~~~g~~ 765 (1492)
..+|+|.+....+-..+ +.++++.++-+|||.+.+..+...+.. ....++++.||..+|....+ ++...+.....++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~ 94 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR 94 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH
Confidence 57899999999875322 589999999999999766555544444 46889999999999987653 3333332211111
Q ss_pred --EEE---EcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC---CCCccHHHHHHHHHHH
Q 043190 766 --MVE---MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG---AERGPILEVIVSRMRY 837 (1492)
Q Consensus 766 --v~~---~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~---~~~g~~~~~i~~~l~~ 837 (1492)
+.. -.++.+...+...+..+.++....-..+ .-..++++++||++.+. ...|..++.+..|.+.
T Consensus 95 ~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l--------~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~t 166 (557)
T PF05876_consen 95 RKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL--------RSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKT 166 (557)
T ss_pred HHhCchhhcccCCchhheecCCCEEEEEeCCCCccc--------ccCCcCEEEEechhhccccCccCCCHHHHHHHHHhh
Confidence 000 0111122222333455665543322111 12367899999999884 3578888888888875
Q ss_pred hhhccCCceEEEEEc-CCCCChHHHHHHh
Q 043190 838 ISSQTERAVRFIGLS-TALANAGDLADWL 865 (1492)
Q Consensus 838 ~~~~~~~~~~ii~lS-ATl~~~~~~~~~l 865 (1492)
. ....+++..| .|......+...+
T Consensus 167 f----~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 167 F----GSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred h----ccCcEEEEeCCCCCCCCCHHHHHH
Confidence 4 1234444444 4444333444433
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.098 Score=52.26 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=14.3
Q ss_pred EEEecCCCCCchHHHHH
Q 043190 707 VLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l 723 (1492)
+++.||.|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999987643
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.099 Score=60.18 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La 747 (1492)
.+++-|.+.+..++..+.+++++||||||||+.. -+++..+.. .+..+++.+-...++.
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 4677788888877777889999999999999875 455666543 2367889988888763
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.034 Score=56.19 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
+..+++.||+|+|||+.+...+.. +.. ....++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~-~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGP-PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCC-CCCCEEEECCEEccc
Confidence 568999999999999986544333 222 123678888776543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.15 Score=58.51 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred HHhhhcCC--CcEEEecCCCCCchHHHHH
Q 043190 697 FHILYHTD--NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 697 i~~~~~~~--~~vli~apTGsGKT~~~~l 723 (1492)
+..+++++ .++|+-||+|+|||+.+.+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 34444333 4899999999999998754
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.37 Score=56.04 Aligned_cols=129 Identities=18% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE-c-ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI-A-PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i-~-P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.++++||||+|||+.+.-........ +.++.++ + |.|.-|.++.+.+.+ ..|+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae----~lgvpv~------------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYAD----KLDVELI------------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhh----cCCCCEE-------------
Confidence 46788999999999998765544443332 4444433 3 445544443333332 2233221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD 860 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~ 860 (1492)
...+|+.+...+.... ..++.++|+||=+-... .-...+..+..+.....+..-++.+||+. ...+
T Consensus 266 -----~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~-----~d~~~l~EL~~l~~~~~p~~~~LVLsag~-~~~d 331 (407)
T PRK12726 266 -----VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNY-----LAEESVSEISAYTDVVHPDLTCFTFSSGM-KSAD 331 (407)
T ss_pred -----ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCc-----cCHHHHHHHHHHhhccCCceEEEECCCcc-cHHH
Confidence 1235655544333211 12457899999885432 22233344443333333344456678875 3444
Q ss_pred HHHH
Q 043190 861 LADW 864 (1492)
Q Consensus 861 ~~~~ 864 (1492)
+.+.
T Consensus 332 ~~~i 335 (407)
T PRK12726 332 VMTI 335 (407)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.24 Score=55.23 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
.+..++|.||+|+|||+.+...+...+.. +.+++|++-. +-..++.+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~e-e~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALE-EHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEee-CCHHHHHHHHH
Confidence 57899999999999999988888877643 7888888743 34455555443
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.18 Score=55.96 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.4
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.++.++++||+|+|||..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999987653
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.22 Score=55.33 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
+.+++.||+|+|||..+... ...+.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~-~~~~~~-~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL-CAAAEQ-AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHH-cCCcEEEEe
Confidence 46999999999999765533 333322 255677764
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.65 Score=58.69 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=84.1
Q ss_pred CCHHHHH---HHHhhhcCCC-cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 689 FNPIQTQ---IFHILYHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 689 l~~~Q~~---~i~~~~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.+.-|.+ .+..+++.+. -+++.|.=|=|||.+.-+++...........+++.+|+.+-+...++-..+.+... |.
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~l-g~ 290 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFL-GY 290 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHh-CC
Confidence 4455555 4555664444 78899999999999888777433332224699999999998888777666555444 54
Q ss_pred EEEEEcCC-CCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGD-YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~-~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
+-...... ............|=+-+|.... ..-+++|||||=.+. -+.++.++.
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIp---lplL~~l~~---------- 345 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIP---LPLLHKLLR---------- 345 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchhc------------ccCCEEEEehhhcCC---hHHHHHHHh----------
Confidence 32211111 0000011112235566665211 115799999998663 223333333
Q ss_pred CceEEEEEcCCCCCh
Q 043190 844 RAVRFIGLSTALANA 858 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~ 858 (1492)
..+.++||.|+..+
T Consensus 346 -~~~rv~~sTTIhGY 359 (758)
T COG1444 346 -RFPRVLFSTTIHGY 359 (758)
T ss_pred -hcCceEEEeeeccc
Confidence 33458999999664
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.22 Score=60.06 Aligned_cols=87 Identities=24% Similarity=0.210 Sum_probs=69.5
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKI-QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~-~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
++.-.-+.|+....+|+.+...|....+ -.|++|.+.+-|||+.+.+.||- ||. |..+.-=.|...||.
T Consensus 1068 ~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF----YdS------DWNPT~D~QAMDRAH 1137 (1185)
T KOG0388|consen 1068 GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF----YDS------DWNPTADQQAMDRAH 1137 (1185)
T ss_pred ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE----ecC------CCCcchhhHHHHHHH
Confidence 5666778899999999999999998655 46789999999999999888884 663 333444468889999
Q ss_pred CCCCCCceEEEEEecCCc
Q 043190 1054 RPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~ 1071 (1492)
|.|..+.-++|.+.....
T Consensus 1138 RLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1138 RLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred hccCccceeeeeeccccc
Confidence 998888888888877654
|
|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.064 Score=50.79 Aligned_cols=66 Identities=23% Similarity=0.094 Sum_probs=42.3
Q ss_pred HHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCC
Q 043190 1152 NTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRH 1222 (1492)
Q Consensus 1152 ~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~ 1222 (1492)
++++.|...|+|+.++ .+|++|+.++.+|++|+-+++++.+....+ ...++.++|..++ .++..+.
T Consensus 1 ~A~~~L~~Lgald~~~---~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 1 KALELLKSLGALDENG---NLTPLGRKMSQLPLDPRLAKMLLYGIQFGC-LDEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp -HHHHHHHTTSB-TTS----B-HHHHHHTTSSS-HHHHHHHHHHHHCT--HHHHHHHHHHHTS-S--B---
T ss_pred CHHHHHHHCCCCCCCC---CcCHHHHHHHHCCCchHhHhHhhhcccccc-HHHHHHHHHHHcC-CCcccCc
Confidence 3788999999995443 679999999999999999999987765554 4555555554444 5555554
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.35 Score=59.12 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=30.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~ 751 (1492)
+.+++.|++|+|||... .++...+.. .++.+++|+.+ ..+..+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHH
Confidence 46899999999999765 455555443 34677887766 44444433
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.4 Score=53.18 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
..+++.||+|+|||..+....-..... +.+++|+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~ 74 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIP 74 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEee
Confidence 457999999999998654333332222 44555544
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.21 Score=51.90 Aligned_cols=39 Identities=38% Similarity=0.430 Sum_probs=28.0
Q ss_pred EEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 707 VLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
++|.||+|+|||..+...+..... .+..++|+.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 689999999999977655554433 367888887765543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.3 Score=54.97 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred CCHHHHHHHHhhhc--CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc-----
Q 043190 689 FNPIQTQIFHILYH--TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ----- 761 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~--~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~----- 761 (1492)
++|.=.+-++.+++ ..+-.++.+|=|.|||.+..+.+...+.. .+.+|+|.+|...-+.++++++...+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 44444444444321 44667888999999999877665544432 36899999999999999999988877632
Q ss_pred cC--CEEEEEcCCCCc------chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 762 LG--KEMVEMTGDYTP------DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 762 ~g--~~v~~~~g~~~~------~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.+ ..+....|+... .........|.+++-. .....-..++++|+|||+.+.. ..++.++-
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars---------~~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP 316 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS---------PNAARGQNPDLVIVDEAAFVNP---GALLSVLP 316 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc---------CCCcCCCCCCEEEEECcccCCH---HHHHHHHH
Confidence 11 112222222110 0000011233333221 0111112568999999998854 34444443
Q ss_pred HHHHhhhccCCceEEEEEcCCCCChHHHHHHh
Q 043190 834 RMRYISSQTERAVRFIGLSTALANAGDLADWL 865 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l 865 (1492)
-+. ..+.+++.+|.+- ..+....++
T Consensus 317 ~l~------~~~~k~IiISS~~-~~~s~tS~L 341 (752)
T PHA03333 317 LMA------VKGTKQIHISSPV-DADSWISRV 341 (752)
T ss_pred HHc------cCCCceEEEeCCC-CcchHHHHh
Confidence 332 2366777887774 234444444
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.27 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=19.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLH 727 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~ 727 (1492)
.+.++++.||+|+|||..+....-+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987554433
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.15 Score=66.67 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
|||-|.+++.. .+.+++|.|..|||||.+...-+...+... +..++++++.|+..|.++-+++.+.+ |..
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l----~~~- 73 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL----GKG- 73 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh----Ccc-
Confidence 78999998875 356899999999999999888777777532 45789999999999998877776544 210
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhh-Hhhhc
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWD-GISRN 799 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~-~l~~~ 799 (1492)
...++.|+|-.+|. .+++.
T Consensus 74 --------------~~~~v~v~TfHs~a~~il~~ 93 (664)
T TIGR01074 74 --------------EARGLTISTFHTLGLDIIKR 93 (664)
T ss_pred --------------ccCCeEEEeHHHHHHHHHHH
Confidence 12357899998873 34443
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.47 Score=57.29 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
...++++|++|+|||+.+...+.. +.. .+.+++++. +.|.-+.++...+...+ |+.+......
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~~-~g~kV~lV~~D~~R~aa~eQL~~la~~~----gvp~~~~~~~--------- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FKK-KGLKVGLVAADTYRPAAYDQLKQLAEKI----GVPFYGDPDN--------- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHH-cCCeEEEecCCCCCHHHHHHHHHHHHHc----CCcEEecCCc---------
Confidence 457889999999999877654433 333 244555443 33554555555544432 4332211000
Q ss_pred CCcEEEECchh-hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 782 SADIIISTPEK-WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 782 ~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..|.. +...++. ....++||||.+-... .-+.++..++.+.....+..-++.++||..
T Consensus 160 ------~d~~~i~~~al~~------~~~~DvVIIDTAGr~~-----~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 160 ------KDAVEIAKEGLEK------FKKADVIIVDTAGRHA-----LEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred ------cCHHHHHHHHHHH------hhcCCEEEEECCCccc-----chHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 01111 1222222 2234899999995432 222344444444333344566777788764
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.16 Score=57.44 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=47.5
Q ss_pred hhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
.+..|..+++-|...+..+.....|++++|.||||||+.. -+++..+. +..+++.+--+.+|.
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~--~~eRvItiEDtaELq 213 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFID--SDERVITIEDTAELQ 213 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCC--CcccEEEEeehhhhc
Confidence 4447889999999999988866679999999999999842 22222222 245999998887764
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.36 Score=66.35 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHH--HHHHHHhccCCCceEEEEcccHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAE--LAMLHLFNTQSDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~--l~il~~l~~~~~~~~l~i~P~r~La~q~ 750 (1492)
.|++-|.+++..++. .++.++|.|..|+|||+..- +.++..+....+..++.++||-.-+.++
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 589999999998874 35789999999999998742 2333333333467899999998766543
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.6 Score=49.52 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=26.6
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+++.|++|+|||..+. ++.+.+... +..++|+. ...+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-~~~v~~~~-~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-GVPVIFVN-FPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-CCeEEEEE-HHHHHH
Confidence 49999999999998765 455555443 45555554 444443
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.29 Score=52.45 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.3
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.++++.||+|+|||+.+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 479999999999999764
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.49 Score=60.41 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=63.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
++.+.+.||||+|||+.............++.++.++.- .|.=+.++.+.+.+.+ |+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~----gvpv~-------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL----GVPVH-------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC----CCCcc--------------
Confidence 457889999999998876544433322222235544432 3433444444444332 43221
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
.+.+|+.+...++. +.+.++|+||=+=+...+ ..+...+..+.....+.-.++.+|||..
T Consensus 247 ----~~~~~~~l~~al~~------~~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 247 ----AVKDAADLRFALAA------LGDKHLVLIDTVGMSQRD-----RNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred ----ccCCHHHHHHHHHH------hcCCCEEEEeCCCCCccC-----HHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 12256655444443 345678999988644221 2233333333333344556778888863
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.34 Score=55.00 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.6
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
..++++.||+|+|||..+-..
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 358999999999999987544
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.32 Score=60.07 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=27.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
+.+++.||+|+|||..+....-......++.+++|+.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 46999999999999876443333333333567777744 344443
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.14 Score=67.16 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..|||-|.+++.. ...+++|.|..|||||.+...-+...+.. -+..++++++-|+..|.++-+++.+.+ |.
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~----~~ 80 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL----GT 80 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh----cc
Confidence 3599999999875 34688999999999999887766666542 245789999999999998877776643 21
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
. ...+.|+|...| ..+++.......+ .-++-|+|+.+
T Consensus 81 ~----------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d 118 (721)
T PRK11773 81 S----------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDD 118 (721)
T ss_pred C----------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHH
Confidence 0 124678999886 3345542111111 11245677765
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.26 Score=56.34 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=47.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE--cccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI--APLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i--~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.++++||||+|||+.....+......+++.++.++ =|.|.-+.++...|.+.+ |+.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~----~~p~~~------------ 256 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKIL----GVPVKV------------ 256 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHh----CCceec------------
Confidence 35688999999999998765444333222112344333 233544555555554432 332211
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecc
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEI 817 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEa 817 (1492)
+.+++.+...+.. +.+.++|+||.+
T Consensus 257 ------~~~~~~l~~~l~~------~~~~d~vliDt~ 281 (282)
T TIGR03499 257 ------ARDPKELRKALDR------LRDKDLILIDTA 281 (282)
T ss_pred ------cCCHHHHHHHHHH------ccCCCEEEEeCC
Confidence 1244445444443 345789999975
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.78 Score=51.46 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcc-----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPD----- 776 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~----- 776 (1492)
.|+-++|+|++|+|||..+...+.+.... .+.+++|+..--. ..++..++.... .|.... ...+.....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~~-~~~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~ 86 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEMS-KEQLLQRLLASE---SGISLSKLRTGSLSDEDWERL 86 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCCC-HHHHHHHHHHHh---cCCCHHHHhcCCCCHHHHHHH
Confidence 67889999999999999877766666543 2678888874321 112222221111 121111 111111110
Q ss_pred ---hhccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCCC-----CccHHHHHHHHHHHhhhccC
Q 043190 777 ---LMALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-----RGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 777 ---~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-----~g~~~~~i~~~l~~~~~~~~ 843 (1492)
........+.+. |++.+...++.... -.++++||||=++.+... +...+..++..++.+....
T Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~- 162 (242)
T cd00984 87 AEAIGELKELPIYIDDSSSLTVSDIRSRARRLKK---EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKEL- 162 (242)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 001112234442 33434333333211 127899999999976322 2234556677777665533
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
+..++++|-.
T Consensus 163 -~~~ii~~~q~ 172 (242)
T cd00984 163 -NVPVIALSQL 172 (242)
T ss_pred -CCeEEEeccc
Confidence 6666776643
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.31 Score=63.31 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=94.0
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccC----------------CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----------------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----------------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+..|+.++.+-.-|.|||.+-+...+...... ..+-+|||+|. ++..|.+.++...... ++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~l 447 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LL 447 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cc
Confidence 34567888889999999987765554432111 24678999997 5667777777654332 46
Q ss_pred EEEEEcCCCC---cchhccCCCcEEEECchhhhHhhhcc---cCc-------------cccCcc--cEEEEecccccCCC
Q 043190 765 EMVEMTGDYT---PDLMALLSADIIISTPEKWDGISRNW---HSR-------------NYVKKV--GLMILDEIHLLGAE 823 (1492)
Q Consensus 765 ~v~~~~g~~~---~~~~~~~~~~Iiv~Tpe~l~~l~~~~---~~~-------------~~l~~i--~liViDEaH~l~~~ 823 (1492)
+|..+.|-.. .....+.++|||+||+..|..=+... ..+ ..|-.+ =-|++|||+++.+
T Consensus 448 Kv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves- 526 (1394)
T KOG0298|consen 448 KVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES- 526 (1394)
T ss_pred eEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-
Confidence 7887777322 12255668999999998763222111 000 011111 2489999999854
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCC----CChHHHHHHhcCCc
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTAL----ANAGDLADWLGVGE 869 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl----~~~~~~~~~l~~~~ 869 (1492)
........+.++. .....+.|+|+ .+.--+-.||+..+
T Consensus 527 ssS~~a~M~~rL~--------~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH--------AINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred hHHHHHHHHHHhh--------hhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 2233334444443 34568999994 33333555665544
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.27 Score=54.40 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred cccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 804 NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 804 ~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
...+.++.+|+||||.|..+- ...+++.........++++..--+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCChh
Confidence 345677999999999885432 1222222233455788888766553
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.33 Score=62.79 Aligned_cols=119 Identities=20% Similarity=0.229 Sum_probs=86.2
Q ss_pred HHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 73 KVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 73 ~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
+++--+ ..|+.||||..--+.-.-+|.+|..... ..--.-|+
T Consensus 690 KLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y-------------------------------------pfQRLDGs 732 (1373)
T KOG0384|consen 690 KLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY-------------------------------------PFQRLDGS 732 (1373)
T ss_pred HHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC-------------------------------------cceeccCC
Confidence 333333 4578999998777777777777754321 12223689
Q ss_pred CChhhHHHHHHHHhCC---CccEEEeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 152 MLRSDRGLTERLFSEG---LLKVLVCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g---~i~vlvaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
+..+.|+...+.|..- ..-.|.||-.-+.|||| .|.+||| ||. .|.+-.=+|-.-||-|-|.-..=.+
T Consensus 733 vrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII-----FDS---DWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 733 VRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII-----FDS---DWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE-----eCC---CCCcchHHHHHHHHHhhcccceEEE
Confidence 9999999999999864 35679999999999999 6777888 663 3555557886677777776566778
Q ss_pred EEEeCCccH
Q 043190 228 IIITSHDKL 236 (1492)
Q Consensus 228 i~~~~~~~~ 236 (1492)
|.+++.+..
T Consensus 805 YRLVTk~Tv 813 (1373)
T KOG0384|consen 805 YRLVTKNTV 813 (1373)
T ss_pred EEEecCCch
Confidence 888877654
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.35 Score=55.39 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=29.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+..+++.||||+|||..+...+...... .+.+++|+.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEc
Confidence 67899999999999998777665555432 2677888764
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.3 Score=53.87 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=33.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE--cccHHHHHHHHHHHHHHh
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI--APLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i--~P~r~La~q~~~~~~~~~ 758 (1492)
.+..+.+.||||+|||+......-......+..++.++ -+.|.-+.++...|.+.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh
Confidence 45688999999999998765544333222222344333 234555666666665543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.68 Score=52.52 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=34.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHh
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~ 758 (1492)
.+.++++||+|+|||+.+.-..... .. .+.+++++. +.|.-+.++...|.+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l-~~-~g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL-KK-QGKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hh-cCCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 4567888999999998665544433 22 356666654 45666666676666644
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.51 Score=51.87 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=68.6
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
..|.-++|.|++|+|||+.++..+...... +.+++|++---. ..|+.+++.. + |...... .
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes-~~~i~~R~~s-~----g~d~~~~-----------~ 122 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT-EQDVRDRLRA-L----GADRAQF-----------A 122 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC-HHHHHHHHHH-c----CCChHHh-----------c
Confidence 467899999999999999888877776653 677888864432 3455555443 2 2211000 0
Q ss_pred CCcEEEEC-chhhhHhhhcccCccccCcccEEEEecccccCCC-CccHHHHHHHHHHHhhhccCCceEEEEEcCC
Q 043190 782 SADIIIST-PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTA 854 (1492)
Q Consensus 782 ~~~Iiv~T-pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~~~~~i~~~l~~~~~~~~~~~~ii~lSAT 854 (1492)
..-++... +...+.++++... -.+.++||||=+..+... ..+.+..++..++.+... .+.-+|++|-.
T Consensus 123 ~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~--~gitvIl~sQl 192 (237)
T PRK05973 123 DLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE--RGLIIVFISQI 192 (237)
T ss_pred cceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--CCCeEEEEecC
Confidence 00011111 1111122222111 124589999999977422 223344444445555442 36666666544
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.69 Score=58.28 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 72 KKVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 72 ~~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
+.+...+ ..++.+||-+.|++..+.++..|.... .+.+-+. |
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l------------------------------------~~~~l~q-g 502 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGI------------------------------------PAEIVIQ-S 502 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhc------------------------------------CCCEEEe-C
Confidence 3344444 356789999999999999998775432 1113333 3
Q ss_pred CCChhhHHHHHHHHhC----CCccEEEeccccccccCC------C-----cEEEEEeccceecCCC-----------C--
Q 043190 151 GMLRSDRGLTERLFSE----GLLKVLVCTATLAWGVNL------P-----AHTVVIKGTQLYDPKA-----------G-- 202 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~----g~i~vlvaT~tla~Gvnl------p-----~~~vVI~~~~~~~~~~-----------~-- 202 (1492)
..+ .|....+.|++ |.-.||++|+.+-.|||+ | -..|||... +|.+.. |
T Consensus 503 ~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kL-PF~~~dp~a~~~~~~~~g~~ 579 (636)
T TIGR03117 503 EKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCA-PFGLNRSLSMLKRIRKTSVR 579 (636)
T ss_pred CCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeC-CCCcCChHHHHHHHHhcCCC
Confidence 322 34557778887 478999999999999999 2 355777532 233211 1
Q ss_pred CcccC-----chhhhhhccCCCCCC-ccceEEEEeCC
Q 043190 203 GWRDL-----GMLDIFGRAGRPQFD-RSGEGIIITSH 233 (1492)
Q Consensus 203 ~~~~~-----~~~~~~GRAGR~~~d-~~G~~i~~~~~ 233 (1492)
++... .+.|-+||-=|..-| ..|..+++-..
T Consensus 580 ~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 580 PWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred hHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 12222 234678999998766 25766666444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.2 Score=53.47 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEccc-HHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPL-KAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~-r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.+.+.||||+|||+......-...... .....++...+ |.-+.++...+.+ .+|+.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~----ilGvp~~~v----------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGK----LLGVSVRSI----------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHH----HcCCceecC-----------
Confidence 567899999999999987653332222221 12334444444 3334444443333 335443221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD 860 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~ 860 (1492)
.++..+...+.. +++.++++||.+- +......+...+..+.......-.++.+|||.. .++
T Consensus 255 -------~~~~dl~~al~~------l~~~d~VLIDTaG-----rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~-~~~ 315 (420)
T PRK14721 255 -------KDIADLQLMLHE------LRGKHMVLIDTVG-----MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS-GDT 315 (420)
T ss_pred -------CCHHHHHHHHHH------hcCCCEEEecCCC-----CCcchHHHHHHHHHHhccCCCceEEEEEcCCCC-HHH
Confidence 123333222222 4567889999863 222223344444444332233456778999963 344
Q ss_pred HHH
Q 043190 861 LAD 863 (1492)
Q Consensus 861 ~~~ 863 (1492)
+.+
T Consensus 316 ~~~ 318 (420)
T PRK14721 316 LDE 318 (420)
T ss_pred HHH
Confidence 433
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.37 Score=53.65 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+.+++++||+|+|||..+....-.. .. .+.+++|+.-
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~-~~-~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAEL-SQ-RGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-Hh-CCCeEEEEEH
Confidence 34689999999999998765333222 22 2556666543
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.69 Score=52.48 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=81.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE-cCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM-TGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~-~g~~~~~~---- 777 (1492)
.++-++|.|+||.|||..++..+......+ +..++|++.--. ..+++.++-.... ++....+ .|....+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~-~~~l~~R~la~~s---~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMS-EEELAARLLARLS---GVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCC-HHHHHHHHHHHhh---cchhhhhhccccCHHHHHHH
Confidence 567899999999999998887777766542 478888877422 2233333322221 2211111 12222111
Q ss_pred ----hccCCCcEEE-EC----chhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIII-ST----PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv-~T----pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..+....+.+ .+ ++.+...++..... ...+++||||=+|.+.. .+...+..+...++.+....
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~- 169 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL- 169 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--STTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--ccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-
Confidence 1112333443 33 33444444432222 26789999999998853 24455667788888777644
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.++++|..
T Consensus 170 -~i~vi~~sQl 179 (259)
T PF03796_consen 170 -NIPVIALSQL 179 (259)
T ss_dssp -TSEEEEEEEB
T ss_pred -CCeEEEcccc
Confidence 7778888765
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.55 Score=59.48 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=67.6
Q ss_pred HHHHhcccEEEEcCCCChhhHHHHHHHHhCCCc--cE-EEeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhh
Q 043190 137 LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLL--KV-LVCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDI 212 (1492)
Q Consensus 137 l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i--~v-lvaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~ 212 (1492)
+..+.++.+-..||.|+..+|..+.+.|-+-.- +| |.+|-.-+-|+|| .|.+||+ ||+. |.+..-.|-
T Consensus 614 ~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil-----~D~d---WNPa~d~QA 685 (776)
T KOG0390|consen 614 LCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL-----FDPD---WNPAVDQQA 685 (776)
T ss_pred HHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-----eCCC---CCchhHHHH
Confidence 334446668889999999999999999997443 44 5666677899999 7777887 6653 556667889
Q ss_pred hhccCCCCCCccceEEEEeCCc
Q 043190 213 FGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 213 ~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
++||=|+|.-+.-.+|.+....
T Consensus 686 maR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHhccCCCcceEEEEEeecCC
Confidence 9999999966556666665544
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.41 Score=58.24 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEE
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYI 740 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i 740 (1492)
..+++|.||+|+|||.+.-.. ++.+... ++..++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v-~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKV-FEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHHHhcCCcEEEEE
Confidence 368999999999999976543 3433322 23556666
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.28 Score=49.46 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCc---eEEEeccc--cccccCCCCc---EEEEecceeeeCcc----------------Ccccc--C
Q 043190 987 DKDRSLVEELFANNKI---QVLVCTST--LAWGVNLPAH---LVIIKGTEYYDGKT----------------KRYVD--F 1040 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~---~vLvaT~~--l~~Gvdip~~---~~VI~~~~~~~~~~----------------~~~~~--~ 1040 (1492)
..+...+++.|++..- .||+++.- +++|||+|+. .+||.|.++-.+.. ..+.+ .
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455788888987543 69998887 9999999984 46666665433221 00001 1
Q ss_pred C--HHHHHHhhcccCCCCCCCceEEEEE
Q 043190 1041 P--ITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 1041 ~--~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+ ...+.|.+||+-|.. ++.|..+++
T Consensus 110 ~~a~~~~~Qa~GR~iR~~-~D~g~i~l~ 136 (142)
T smart00491 110 FDAMRALAQAIGRAIRHK-NDYGVVVLL 136 (142)
T ss_pred HHHHHHHHHHhCccccCc-cceEEEEEE
Confidence 1 457899999999975 556765554
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.38 Score=60.14 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=74.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhcc-------CCEEEEEcCCCCc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQL-------GKEMVEMTGDYTP 775 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~-------g~~v~~~~g~~~~ 775 (1492)
--+|+.=-.|-|||+...-.+...+.+. +-.++||++|...+. .|.+.|.+++ .+.|..+..-...
T Consensus 697 sGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~-----NW~~EFekWm~~~e~~~~leV~eL~~vkr~ 771 (1567)
T KOG1015|consen 697 SGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL-----NWMNEFEKWMEGLEDDEKLEVSELATVKRP 771 (1567)
T ss_pred cchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHH-----HHHHHHHHhcccccccccceeehhhhccCh
Confidence 3456666679999997665544444332 357899999987644 3444454442 2333333222121
Q ss_pred ch------hccCCCcEEEECchhhhHhhhcccC--c---------cccCcccEEEEecccccCCCCccHHHHHHHHHHHh
Q 043190 776 DL------MALLSADIIISTPEKWDGISRNWHS--R---------NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI 838 (1492)
Q Consensus 776 ~~------~~~~~~~Iiv~Tpe~l~~l~~~~~~--~---------~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~ 838 (1492)
.. .+.....|.|.-++.+..|...... . ..-...++||.||+|.+-.+-. .+...+.+++
T Consensus 772 e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeks-a~Skam~~ir-- 848 (1567)
T KOG1015|consen 772 EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKS-AVSKAMNSIR-- 848 (1567)
T ss_pred HHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchH-HHHHHHHHHH--
Confidence 11 2233567888777776555432111 0 0112458999999999865432 3333444443
Q ss_pred hhccCCceEEEEEcCCC
Q 043190 839 SSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl 855 (1492)
..|-|+|++|+
T Consensus 849 ------tkRRI~LTGTP 859 (1567)
T KOG1015|consen 849 ------TKRRIILTGTP 859 (1567)
T ss_pred ------hheeEEeecCc
Confidence 22446667775
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.84 Score=56.60 Aligned_cols=123 Identities=21% Similarity=0.173 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+....++|..+|+|..||..-.-+-..|... . ++...-.-|
T Consensus 536 ~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~-~-----------------------------------~ysylRmDG 579 (923)
T KOG0387|consen 536 AKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA-K-----------------------------------GYSYLRMDG 579 (923)
T ss_pred HHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc-C-----------------------------------CceEEEecC
Confidence 3344455578889999999998766555544420 0 111233457
Q ss_pred CCChhhHHHHHHHHhCCCc-c-EEEeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 151 GMLRSDRGLTERLFSEGLL-K-VLVCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i-~-vlvaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
.-+...|....+.|.++.- . .|.+|-+-..|+|| .|.+||| |||. |.+..=.|-.-||-|.|.-+.=.+
T Consensus 580 tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----fDPd---WNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 580 TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----FDPD---WNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----ECCC---CCCccchHHHHHHHhhcCccceEE
Confidence 7788999999999998764 3 47899999999999 7888888 8875 566666776667777775444556
Q ss_pred EEEeCCccHH
Q 043190 228 IIITSHDKLA 237 (1492)
Q Consensus 228 i~~~~~~~~~ 237 (1492)
|.+.+...++
T Consensus 652 YRL~t~gTIE 661 (923)
T KOG0387|consen 652 YRLMTAGTIE 661 (923)
T ss_pred EEEecCCcHH
Confidence 6666655443
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.65 Score=56.79 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
.+..+++.|++|+|||+.....+..... .+.+++|+.-.- -..|+..+..+ + |... +
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ee-s~~qi~~ra~r-l----g~~~---------~------ 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEE-SASQIKLRAER-L----GLPS---------D------ 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccc-cHHHHHHHHHH-c----CCCh---------h------
Confidence 4678899999999999987776665543 267899988543 33444443322 2 3210 0
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C----Cc--cHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E----RG--PILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~----~g--~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
++.+.....+..+..... -.+.++||||+++.+.. + .| .++..++..+..+.+.. +..+++.+
T Consensus 136 -~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~--~itvilv~ 205 (446)
T PRK11823 136 -NLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQR--GIAVFLVG 205 (446)
T ss_pred -cEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEe
Confidence 133333333444433211 13578999999996532 1 12 23444555565554433 55555553
|
|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.14 Score=47.58 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCC
Q 043190 1153 TFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGA 1212 (1492)
Q Consensus 1153 ~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a 1212 (1492)
++..|...|+|+.++ .+|++|+.++.+|++|+.+++++.+.....+..+++.+++..
T Consensus 2 A~~~L~~LgAld~~~---~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~l 58 (92)
T smart00847 2 ALELLYELGALDDDG---RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAML 58 (92)
T ss_pred HHHHHHHCCCcCCCC---CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHh
Confidence 678899999996542 689999999999999999999987654214566777666543
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.2 Score=51.77 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc-c-cHHHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA-P-LKAIVRERMNDWKDR 757 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~-P-~r~La~q~~~~~~~~ 757 (1492)
.+..+.+.||+|+|||+.+...... +.. .+.+++++. . .|+.+.++...|...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~-l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~ 167 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK-YKA-QGKKVLLAAGDTFRAAAIEQLQVWGER 167 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh-cCCeEEEEecCccchhhHHHHHHHHHH
Confidence 4567889999999999865443322 222 255666554 3 466666666666554
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.71 Score=64.57 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHh---ccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLF---NTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l---~~~~~~~~l~i~P~r~La~q 749 (1492)
.|++.|.+++..++.+ ++.++|.|..|+|||+..- ++...+ ....+.+++.++||-.-|.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 5899999999998854 5689999999999998743 333332 23345678999999876654
|
|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.2 Score=53.30 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=48.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
..|.++||||+..+++|.++|+.|+.+|..++.+++..+ +++..+..|.+++.
T Consensus 3 ~~L~~IpGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 568899999999999999999999999999999999988 77888888988887
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.5 Score=57.53 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=25.6
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P 742 (1492)
+.+++.||+|+|||..+. ++...+.. .++.+++|+..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEH
Confidence 468999999999998764 44444433 33567788753
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.65 Score=55.14 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHhhhcCCC--cEEEecCCCCCchHHHHHHH
Q 043190 692 IQTQIFHILYHTDN--NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~--~vli~apTGsGKT~~~~l~i 725 (1492)
...+.+..++.+++ ++++.||+|+|||..+....
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34444555554555 79999999999999875443
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.93 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.7
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
+-++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999987654
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.76 Score=56.22 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=26.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P 742 (1492)
+.+++.||+|+|||..+. ++...+. ..++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 469999999999998764 4444433 334567888764
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.59 Score=51.92 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=23.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+.++++||+|+|||..+. ++...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~-~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ-RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh-CCCcEEEeeH
Confidence 578999999999998643 44433332 2566776553
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.92 Score=57.73 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.3
Q ss_pred EEEecCCCCCchHHHHHHH
Q 043190 707 VLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l~i 725 (1492)
++|.|+||+|||.+.-..+
T Consensus 784 LYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4599999999999876543
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.53 Score=67.66 Aligned_cols=62 Identities=29% Similarity=0.415 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHH---HHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAE---LAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~---l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
..|++.|.+++..++.+ ++.++|.|+.|+|||+... -++.+.+.. .+.+++.++||-.-+.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-EQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHH
Confidence 35899999999998743 4677889999999998762 234444433 46789999999776654
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.9 Score=51.41 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+.++++.||||+|||..+. +|...+....+..++|+.. ..+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~~g~~v~y~~~-~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRKKGVPVLYFPF-VEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhhcCceEEEEEH-HHHHH
Confidence 36789999999999998764 4555544322566666653 34433
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.69 Score=66.56 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~ 751 (1492)
.|++-|.+++..++.+ ++-.+|.|+.|+|||.+. -.+...+.. .+.+++.++|+-.-+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~-~G~~V~~lAPTgrAA~~L~ 491 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE-QGYEIQIITAGSLSAQELR 491 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh-cCCeEEEEeCCHHHHHHHH
Confidence 4889999999998844 478899999999999864 344444443 4789999999987665433
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.9 Score=48.61 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=60.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccH-HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLK-AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r-~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
.+..+.+.||+|+|||+.+......... .+.++.++. +.| +.+. +|+... ...+..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~----ql~~~~-~~~~~~~~~----------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQ----QLQDYV-KTIGFEVIA----------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHH----HHHHHh-hhcCceEEe-----------
Confidence 4578999999999999976654443322 234444443 333 2333 233322 111322211
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..+|+.+...++.... ..++++++||-+=.... ....++.+.. +.....+...++.+|||..
T Consensus 136 -------~~~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~-~~~~l~el~~----~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 136 -------VRDEAAMTRALTYFKE---EARVDYILIDTAGKNYR-ASETVEEMIE----TMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -------cCCHHHHHHHHHHHHh---cCCCCEEEEECCCCCcC-CHHHHHHHHH----HHhhhCCCeEEEEEcCccC
Confidence 1245444433332111 23678999999864421 1123333333 2222334455777899863
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.23 Score=53.02 Aligned_cols=54 Identities=28% Similarity=0.464 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
...+++-|.+.+...+..+.+++++||||||||+.. -+++..+. +..+++.+--
T Consensus 7 ~g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~--~~~~~i~ied 60 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIP--PDERIITIED 60 (186)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcC--CCCCEEEECC
Confidence 345788899999988888999999999999999865 33444443 2345555433
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.18 Score=58.94 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 692 IQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
-..+.+..+...+.|++|+||||||||+.. -+++..+.. ..+++.+-.+.+|.
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~--~~rivtiEd~~El~ 202 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAIPP--QERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHcccCC--CCCEEEECCCcccc
Confidence 344555666667899999999999999864 455555543 56788888887763
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.35 Score=63.70 Aligned_cols=90 Identities=29% Similarity=0.341 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..|||-|.+++.. ...+++|.|..|||||.+...-+...+... ...++++++-|+..|.++.+++.+.+ |.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~----~~ 75 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL----GP 75 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh----cc
Confidence 4599999999975 356899999999999998887777666432 34689999999999988777776543 21
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRN 799 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 799 (1492)
...++.|+|-..| ..+++.
T Consensus 76 ----------------~~~~~~i~TFHs~~~~iLr~ 95 (726)
T TIGR01073 76 ----------------VAEDIWISTFHSMCVRILRR 95 (726)
T ss_pred ----------------ccCCcEEEcHHHHHHHHHHH
Confidence 0135788998886 334443
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.71 Score=56.79 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=78.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcC-CCCcch--
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTG-DYTPDL-- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g-~~~~~~-- 777 (1492)
..|+-++|.|.||.|||..++-.+...... .+..++|.+.- --..|+..++-.... ++.... ..| ..+.+.
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLE-MPAEQIMMRMLASLS---RVDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHhhC---CCCHHHhccCCCCCHHHHH
Confidence 377889999999999998765444443322 25667776554 234555555443322 222111 123 222211
Q ss_pred ------hcc-CCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhh
Q 043190 778 ------MAL-LSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 778 ------~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~ 840 (1492)
... ...++.|- |+..+....++.... ...+++||||=.+++.. .+...+..+...++.+..
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 371 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRE--NGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAK 371 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 111 13345553 344443333332111 12578999999998742 233446677777777766
Q ss_pred ccCCceEEEEEcC
Q 043190 841 QTERAVRFIGLST 853 (1492)
Q Consensus 841 ~~~~~~~ii~lSA 853 (1492)
.. ++.+|++|-
T Consensus 372 el--~ipVi~lsQ 382 (472)
T PRK06904 372 EL--KVPVVALSQ 382 (472)
T ss_pred Hh--CCeEEEEEe
Confidence 43 777888874
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.3 Score=51.91 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=16.8
Q ss_pred CcEEEecCCCCCchHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~ 724 (1492)
.+++++||+|+|||..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999876543
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.92 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=19.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNT 731 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~ 731 (1492)
..|+++.||||+|||.+.-. +.+.+..
T Consensus 42 p~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 35799999999999987654 4444443
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.54 Score=59.82 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=65.2
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+....|+|+||-..|-...+.+.+.|.+.......+ -|-+|
T Consensus 421 ~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL---------------------------------NAk~h--- 464 (822)
T COG0653 421 DIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL---------------------------------NAKNH--- 464 (822)
T ss_pred HHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceee---------------------------------ccccH---
Confidence 344444789999999999999988888776432110000 12233
Q ss_pred ChhhHHHHHHHHhCCCc-cEEEeccccccccCC--CcE---------EEEEeccceecCCCCCcccCchh-hhhhccCCC
Q 043190 153 LRSDRGLTERLFSEGLL-KVLVCTATLAWGVNL--PAH---------TVVIKGTQLYDPKAGGWRDLGML-DIFGRAGRP 219 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i-~vlvaT~tla~Gvnl--p~~---------~vVI~~~~~~~~~~~~~~~~~~~-~~~GRAGR~ 219 (1492)
.|+.-+-+ ..|.. -|-+||+-+.||-|| +.. ..|| ||.+-.+.. +- |.-|||||-
T Consensus 465 ---~~EA~Iia-~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VI-gTERhESRR-------IDnQLRGRsGRQ 532 (822)
T COG0653 465 ---AREAEIIA-QAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVI-GTERHESRR-------IDNQLRGRAGRQ 532 (822)
T ss_pred ---HHHHHHHh-hcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEE-ecccchhhH-------HHHHhhcccccC
Confidence 22222222 23333 467999999999997 333 1233 343322211 22 577999998
Q ss_pred CCCccceEEEEeCC
Q 043190 220 QFDRSGEGIIITSH 233 (1492)
Q Consensus 220 ~~d~~G~~i~~~~~ 233 (1492)
| ..|.+-.+.+-
T Consensus 533 G--DpG~S~F~lSl 544 (822)
T COG0653 533 G--DPGSSRFYLSL 544 (822)
T ss_pred C--Ccchhhhhhhh
Confidence 8 46777666653
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.61 Score=56.42 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.5
Q ss_pred cEEEecCCCCCchHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~i 725 (1492)
.++++||.|+|||.++-..+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999876543
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.42 Score=48.17 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=55.2
Q ss_pred EEEcCCCChhhHHHHHHHHhCCC-ccEEEeccccccccCCCc---EEEEEeccceecCCC----------------CCcc
Q 043190 146 GVHHAGMLRSDRGLTERLFSEGL-LKVLVCTATLAWGVNLPA---HTVVIKGTQLYDPKA----------------GGWR 205 (1492)
Q Consensus 146 ~~hhagl~~~~R~~ve~~f~~g~-i~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~~~~----------------~~~~ 205 (1492)
.+..-+....+...+.+.|++.. -.||++|..++.|||+|. +.|||-|...-+|.. .++.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34445566666788888898754 379999988999999986 478887754332221 1122
Q ss_pred c-------CchhhhhhccCCCCCCccceEEEE
Q 043190 206 D-------LGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 206 ~-------~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
. ....|.+||+=|...| .|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1 1234578999997765 5765554
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.96 Score=50.83 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
.+..++|.||+|+|||..+...+.+.+.. +.+++|+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 57789999999999999888888776654 67788876
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.6 Score=57.63 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~---- 777 (1492)
.|.-++|.|+||.|||..++-.+..... .+.+++|++.- .-..|+..++..... |+.... ..|+.+.+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLE-MPAEQLMLRMLSAKT---SIPLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCc-CCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHHH
Confidence 6788999999999999988776666543 25677777554 234555555433221 222111 123333211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCCC-----CccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-----RGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-----~g~~~~~i~~~l~~~~~~~~ 843 (1492)
....+..+.|- |+..+....++.... ...+++||||=.+++... +...+..+...++.+...+
T Consensus 265 ~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~--~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel- 341 (472)
T PRK08506 265 SDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQ--HPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLAREL- 341 (472)
T ss_pred HHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 11223455553 333444444432211 235899999999988522 2233455666677666543
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 342 -~ipVi~lsQL 351 (472)
T PRK08506 342 -DIPIIALSQL 351 (472)
T ss_pred -CCcEEEEeec
Confidence 6777877754
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.6 Score=54.35 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhc----CC----CcEEEecCCCCCchHHHHHHHHHHh-cc-CCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 691 PIQTQIFHILYH----TD----NNVLLGAPTGSGKTISAELAMLHLF-NT-QSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 691 ~~Q~~~i~~~~~----~~----~~vli~apTGsGKT~~~~l~il~~l-~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|+|.-++..++. .+ +.+++.-|=|.|||.......+-.+ .. ..+..++++++++.-|...++.+...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567766666651 11 3578888999999986655444333 22 24678999999999999999988876654
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=1 Score=55.06 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.0
Q ss_pred CcEEEecCCCCCchHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~ 724 (1492)
+.++++||.|+|||+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 46999999999999987644
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.92 Score=56.52 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=27.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q 749 (1492)
+.++|.|++|+|||.... ++...+. ..++.+++|+.- ..++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~e 358 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNE 358 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHH
Confidence 348999999999998654 3444333 234567777654 344443
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.59 Score=57.62 Aligned_cols=143 Identities=18% Similarity=0.159 Sum_probs=79.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|.-++|.|+||.|||..++..+...... .+..++|++.- .-..|+..++....+ ++... ...|......
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 67889999999999999877666554332 25566666543 224455555433222 21111 1123333211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC------CCccHHHHHHHHHHHhhhcc
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA------ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~------~~g~~~~~i~~~l~~~~~~~ 842 (1492)
....+..+.|. |++.+....++.... ...+++||||=.|.+.. .+...+..+...++.+...+
T Consensus 277 ~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~--~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 277 TIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQE--HGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11224456554 333343333332211 12688999999998842 12234556777777776543
Q ss_pred CCceEEEEEcCC
Q 043190 843 ERAVRFIGLSTA 854 (1492)
Q Consensus 843 ~~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 355 --~i~vi~lsQl 364 (448)
T PRK05748 355 --KVPVIALSQL 364 (448)
T ss_pred --CCeEEEeccc
Confidence 7778888765
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.1 Score=53.35 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
.+.-+++.|++|+|||+.....+..... .+.+++|+.-... ..|+..+..+ + |...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs-~~qi~~Ra~r-l----g~~~---------------- 136 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEES-PEQIKLRADR-L----GIST---------------- 136 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcC-HHHHHHHHHH-c----CCCc----------------
Confidence 4678999999999999987766555433 2578999876433 3343333222 2 2211
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C----Cc--cHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E----RG--PILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~----~g--~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
.++.+.....+..+..... -.+.++||||+++.+.. + .| .++..++..+..+.+.. +.-+++.+
T Consensus 137 ~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~--~itvilvg 207 (372)
T cd01121 137 ENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER--NIPIFIVG 207 (372)
T ss_pred ccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 0122222222333333211 13578999999996621 1 11 23455556666555433 45555543
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.9 Score=51.70 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=62.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
..+.++|++|+|||+.+.-.... +.. .+.++++++ |.|.-|.++.+.+.+. .++.+....+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~-l~~-~G~kV~lV~~D~~R~aA~eQLk~~a~~----~~vp~~~~~~~~--------- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYY-YQR-KGFKPCLVCADTFRAGAFDQLKQNATK----ARIPFYGSYTES--------- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH-CCCCEEEEcCcccchhHHHHHHHHhhc----cCCeEEeecCCC---------
Confidence 46789999999998765543332 222 245555543 3566666555554443 244443222111
Q ss_pred CcEEEECchhh-hHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 783 ADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.|..+ ...+.... -..+++||||=+-.+. .-+.++..+..+.....+.-.++.++||...
T Consensus 166 ------dp~~i~~~~l~~~~----~~~~DvViIDTaGr~~-----~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 166 ------DPVKIASEGVEKFK----KENFDIIIVDTSGRHK-----QEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred ------CHHHHHHHHHHHHH----hCCCCEEEEECCCCCc-----chHHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 11110 00111100 1356788888886432 2233445555444444455667778888764
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.4 Score=66.45 Aligned_cols=123 Identities=19% Similarity=0.128 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
++|+-|.+++.. .++|++|+|.-|||||.+..--+++.+..+ ...++++++=|++.|.++-.++.+.+.+......
T Consensus 1 ~~t~~Q~~ai~~---~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p 77 (1232)
T TIGR02785 1 QWTDEQWQAIYT---RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEP 77 (1232)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 368999999984 688999999999999999887777766543 2257999999999999999998887765421100
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
...........-...-|+|-..+ ..++++......+ +.++=|.||..
T Consensus 78 ----~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e 125 (1232)
T TIGR02785 78 ----NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTE 125 (1232)
T ss_pred ----hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHH
Confidence 00000011111235578888886 4555553221111 12344578776
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.2 Score=51.20 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+.++++.||+|+|||+++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34899999999999998743
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.76 Score=57.38 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.8
Q ss_pred CcEEEecCCCCCchHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~i 725 (1492)
..+|++||.|+|||.++....
T Consensus 38 HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356999999999999875443
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.2 Score=46.85 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=26.5
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMN 752 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~ 752 (1492)
.+++.||+|+|||+.....+... .. .+.+++++. +.+.-..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~-~~-~g~~v~~i~~D~~~~~~~~~l~ 48 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL-KK-KGKKVLLVAADTYRPAAIEQLR 48 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCCcEEEEEcCCCChHHHHHHH
Confidence 36789999999999865544433 22 245665544 44433333333
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.1 Score=55.16 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=17.4
Q ss_pred CcEEEecCCCCCchHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~i 725 (1492)
+.++++||.|+|||+++-+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 379999999999999876543
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.52 Score=53.88 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCHHHHHHHHhhh---cC-CCcEEEecCCCCCchHHHHHHHHHHh
Q 043190 689 FNPIQTQIFHILY---HT-DNNVLLGAPTGSGKTISAELAMLHLF 729 (1492)
Q Consensus 689 l~~~Q~~~i~~~~---~~-~~~vli~apTGsGKT~~~~l~il~~l 729 (1492)
+++.+.+++..+- .. ...+++.||+|+|||+.+-.. ...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l-~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL-LKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH-HHhc
Confidence 4556666665442 23 347899999999999876543 3433
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.1 Score=55.23 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE-cCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM-TGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~-~g~~~~~~---- 777 (1492)
.|+-++|.|.+|.|||..++-.+...... .+..++|.+.-- -..|+..++-.... ++....+ .|..+.+.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM-~~~ql~~Rlla~~~---~v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEM-PGEQIMMRMLASLS---RVDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccC-CHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 67889999999999998877655554332 256677775542 24455555443222 2221111 23332211
Q ss_pred ----hcc-CCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhcc
Q 043190 778 ----MAL-LSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 778 ----~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~ 842 (1492)
... .+..+.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.+...+
T Consensus 298 ~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 298 SGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFRE--HGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 011 34455554 333343334332111 13589999999998742 23344667777788777644
Q ss_pred CCceEEEEEcCC
Q 043190 843 ERAVRFIGLSTA 854 (1492)
Q Consensus 843 ~~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 376 --~ipVi~LsQL 385 (471)
T PRK08006 376 --QVPVVALSQL 385 (471)
T ss_pred --CCeEEEEEec
Confidence 7788888743
|
|
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=2.4 Score=51.87 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=95.2
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.++.+|++..+..-=.+. + ..+-.+.--|=-.|||-.. .||+..+. .-.+-++.|++.-|-.++-+++++..
T Consensus 181 ~~lk~~Fdi~~~s~~~l~~----F-KQkaTVFLVPRRHGKTWf~-VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~ 254 (668)
T PHA03372 181 EYLLHVFDIEFLSESSLNI----F-KQKATVFLVPRRHGKTWFI-IPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEF 254 (668)
T ss_pred HHHHHHcCCcccCHHHHHH----h-hccceEEEecccCCceehH-HHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHH
Confidence 4556667777666433332 3 3455667779999999743 34444333 34588999999999998888888887
Q ss_pred HhhhccCCE-EEEEcCCCCcchhccCCCcEEEECchhhh---HhhhcccCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 757 RLVSQLGKE-MVEMTGDYTPDLMALLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 757 ~~~~~~g~~-v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
++.++.+-+ +.... +..|.+.-|+.=. -......+...=++++++++||||.+. ...+..++
T Consensus 255 ~lrrwF~~~~vi~~k-----------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~---~~a~~til 320 (668)
T PHA03372 255 RCRRMFPRKHTIENK-----------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK---KDAFNTIL 320 (668)
T ss_pred HHhhhcCccceeeec-----------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC---HHHHHHhh
Confidence 777665533 21111 1233333333210 000000111112478899999999883 34566666
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCChHHHHHHh
Q 043190 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWL 865 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l 865 (1492)
..|. +.+.++|..|.|= ..++-..|+
T Consensus 321 gfm~------q~~~KiIfISS~N-sg~~sTSfL 346 (668)
T PHA03372 321 GFLA------QNTTKIIFISSTN-TTNDATCFL 346 (668)
T ss_pred hhhc------ccCceEEEEeCCC-CCCccchHH
Confidence 6553 5688999999883 223334455
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.78 Score=56.35 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|+-++|.|.||+|||..++-.+...... .+..+++.+.-- -..|++.++-.... ++... ...|....+.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM-~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e~~~~ 286 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEM-PGTQLAMRMLGSVG---RLDQHRMRTGRLTDEDWPKL 286 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCC-CHHHHHHHHHHhhc---CCCHHHHhcCCCCHHHHHHH
Confidence 67889999999999998776555544322 255666664432 23444444432221 11111 1123333211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..+.+..+.|. |+..+....++.... ...+++||||=.+.+.. .+...+..+...++.+...+
T Consensus 287 ~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~--~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel- 363 (460)
T PRK07004 287 THAVQKMSEAQLFIDETGGLNPMELRSRARRLARQ--CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL- 363 (460)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh-
Confidence 12234566664 333333333332111 23578999999998852 13334567777777776543
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.+|++|--
T Consensus 364 -~ipVi~lsQL 373 (460)
T PRK07004 364 -DVPVIALSQL 373 (460)
T ss_pred -CCeEEEEecc
Confidence 7778888754
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.1 Score=57.61 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=61.4
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNK--IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGR 1051 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GR 1051 (1492)
.++-..-+.|...-++|...++.|.... .-.|++|..-+.|||+-+.+.||- ||..-+..+|--..+--||+|+
T Consensus 1299 HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF----YDsDwNPtMDaQAQDrChRIGq 1374 (1958)
T KOG0391|consen 1299 HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF----YDSDWNPTMDAQAQDRCHRIGQ 1374 (1958)
T ss_pred cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE----ecCCCCchhhhHHHHHHHhhcC
Confidence 3445556678899999999999998654 356789999999999998888774 7754432233223344444444
Q ss_pred cCCCCCCCceEEEEEecCCc
Q 043190 1052 AGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1052 agR~g~~~~G~~i~l~~~~~ 1071 (1492)
+ +.-..|.|+++..
T Consensus 1375 t------RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1375 T------RDVHIYRLISERT 1388 (1958)
T ss_pred c------cceEEEEeeccch
Confidence 4 5678888887654
|
|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.2 Score=47.36 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccc
Q 043190 319 DAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR 390 (1492)
Q Consensus 319 ~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R 390 (1492)
+|++.|...|+|+.+ + .+|++|+.|+.++++|.-++++......++ ...++.+.|...+ .++..+
T Consensus 1 ~A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~-~~~f~~ 65 (102)
T PF04408_consen 1 KALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGC-LDEALIIAAILSV-RSPFIN 65 (102)
T ss_dssp -HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT--HHHHHHHHHHHTS-S--B--
T ss_pred CHHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhcccccc-HHHHHHHHHHHcC-CCcccC
Confidence 368899999999533 2 799999999999999999999998766554 4455555555544 555444
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.78 Score=56.55 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=79.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|.-++|.|+||.|||..++-.+...... .+..++|.+.--. ..|+..++..... ++... ...|......
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs-~~ql~~Rl~a~~s---~i~~~~i~~g~l~~~e~~~~ 302 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMS-ASQLAMRLISSNG---RINAQRLRTGALEDEDWARV 302 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCC-HHHHHHHHHHhhC---CCcHHHHhcCCCCHHHHHHH
Confidence 67889999999999999877665554332 2456766654322 3455555433221 11111 1123322211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..+.+..+.|. |++.+....++... -..+++||||=.+.+.. .+...+..+...++.+...+
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~---~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel- 378 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR---EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL- 378 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-
Confidence 12223455554 33444333443221 23588999999998741 23344667777788776644
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 379 -~ipVi~lsQL 388 (476)
T PRK08760 379 -NVPVIALSQL 388 (476)
T ss_pred -CCEEEEeecc
Confidence 7778888744
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=4 Score=48.65 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
+..++++||||+|||+.+...+...... .+.++.++. +.|..+.++...+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHH
Confidence 4568899999999998877655443222 244443332 446666665555443
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.4 Score=54.59 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=62.4
Q ss_pred cEEEEcCCCChhhHHHHHHHHhCCC---ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCC
Q 043190 144 AVGVHHAGMLRSDRGLTERLFSEGL---LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 144 gv~~hhagl~~~~R~~ve~~f~~g~---i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~ 220 (1492)
...-.-|..+-++|....+.|-.-. .-.|++|-..+.||||-+.++||- ||.. |.+-.-+|-.-||-|-|
T Consensus 513 ~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl----yDSD---WNPQ~DLQAmDRaHRIG 585 (971)
T KOG0385|consen 513 EYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL----YDSD---WNPQVDLQAMDRAHRIG 585 (971)
T ss_pred eeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE----ecCC---CCchhhhHHHHHHHhhC
Confidence 3555679999999999999998654 456899999999999977777664 6643 33333455555555555
Q ss_pred CCccceEEEEeCCccHH
Q 043190 221 FDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 221 ~d~~G~~i~~~~~~~~~ 237 (1492)
.-..=.++.+++.+..+
T Consensus 586 Q~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 586 QKKPVVVYRLITENTVE 602 (971)
T ss_pred CcCceEEEEEeccchHH
Confidence 54667888888776644
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.81 E-value=1 Score=56.77 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.0
Q ss_pred CcEEEecCCCCCchHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~i 725 (1492)
..+|++||.|+|||+++....
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999876433
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.3 Score=46.15 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=51.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
+.-.+++||-.||||.-.+..+-+.-. .+.++++..|... .+++.. .|..-.|-. ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp~iD----------~R~~~~---~V~Sr~G~~--------~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKPAID----------TRYGVG---KVSSRIGLS--------SE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEecccc----------cccccc---eeeeccCCc--------cc
Confidence 445689999999999965554444333 3778888888632 122111 122222211 11
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
-+.|-.+..+...+..... ...+++|.||||+.++.+
T Consensus 61 A~~i~~~~~i~~~i~~~~~---~~~~~~v~IDEaQF~~~~ 97 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHE---KPPVDCVLIDEAQFFDEE 97 (201)
T ss_pred ceecCChHHHHHHHHhccc---CCCcCEEEEehhHhCCHH
Confidence 2344444443333332111 122789999999988643
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.64 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.8
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHh
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLF 729 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l 729 (1492)
..+++|+||+|+|||.++-. +++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 36899999999999987643 44433
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.6 Score=53.53 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch---
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL--- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~--- 777 (1492)
..|+-++|.|.||.|||..++-.+...... .+..++|.+.--. ..|+..++-.... ++.... ..|....+.
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs-~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~ 289 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMP-AEQLMMRMLASLS---RVDQTKIRTGQLDDEDWAR 289 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCC-HHHHHHHHHHhhC---CCCHHHHhcCCCCHHHHHH
Confidence 367889999999999998775544444322 2566777755422 4455555433222 221111 123222111
Q ss_pred -----hcc-CCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhc
Q 043190 778 -----MAL-LSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 778 -----~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~ 841 (1492)
..+ ....+.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.+...
T Consensus 290 ~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~--~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke 367 (464)
T PRK08840 290 ISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIARE--HGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE 367 (464)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 111 23455553 233333333332111 12588999999998841 2333456677777777664
Q ss_pred cCCceEEEEEcC
Q 043190 842 TERAVRFIGLST 853 (1492)
Q Consensus 842 ~~~~~~ii~lSA 853 (1492)
+ ++.+|++|-
T Consensus 368 l--~ipVi~LsQ 377 (464)
T PRK08840 368 L--NVPVVALSQ 377 (464)
T ss_pred h--CCeEEEEEe
Confidence 4 777888874
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.33 Score=56.66 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 695 QIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 695 ~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
+.+..+...+.|++|+|+||||||+.. -+++..+.. ..+++.+--+.+|.
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll-~aL~~~ip~--~~ri~tiEd~~El~ 200 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFT-NAALREIPA--IERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhCCC--CCeEEEecCCCccc
Confidence 445555567899999999999999864 456666543 56777776666653
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.8 Score=52.30 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=31.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE--cccHHHHHHHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI--APLKAIVRERMNDWKDR 757 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i--~P~r~La~q~~~~~~~~ 757 (1492)
..++++||+|+|||+.+.-.+...... .+.+++++ =+.|+.+.++.+.|.+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQ 154 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhh
Confidence 467899999999998766544433222 24444443 34666666666655543
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.5 Score=51.22 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCHHHHHHHHhhhcCCC---cEEEecCCCCCchHHHHHH
Q 043190 689 FNPIQTQIFHILYHTDN---NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~---~vli~apTGsGKT~~~~l~ 724 (1492)
.+|+|...+..++..++ -.+++||.|.|||..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 57999999999886553 5889999999999877543
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=90.40 E-value=3.8 Score=42.53 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=30.4
Q ss_pred HhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 795 GISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 795 ~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.+.........-...+++||||||.|..+ ....++..| ...+....+|++|..+
T Consensus 89 ~i~~~~~~~~~~~~~KviiI~~ad~l~~~---a~NaLLK~L----Eepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 89 EIIEFLSLSPSEGKYKVIIIDEADKLTEE---AQNALLKTL----EEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHCTSS-TTSSSEEEEEETGGGS-HH---HHHHHHHHH----HSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHHhcCCceEEEeehHhhhhHH---HHHHHHHHh----cCCCCCEEEEEEECCh
Confidence 33333333333467899999999988432 223333333 3445678888887654
|
... |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.29 Score=55.93 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHH
Q 043190 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 691 ~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~L 746 (1492)
+...+.+......+.+++++||||||||+.. .+++..+... ..+++.+....++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~-~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE-DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-TSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc-ccceEEeccccce
Confidence 3444555555556889999999999999876 5556655542 4788888777663
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.98 Score=57.71 Aligned_cols=72 Identities=26% Similarity=0.252 Sum_probs=59.5
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+.+..|+|+||-++....+..+.+.+.+.... ..|+..|++|
T Consensus 180 ~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~-----------------------------------~~v~~lhS~l 224 (665)
T PRK14873 180 AAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA-----------------------------------GDVAVLSAGL 224 (665)
T ss_pred HHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC-----------------------------------CcEEEECCCC
Confidence 44555678999999999999999888888754320 2389999999
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccc
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLA 179 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla 179 (1492)
++.+|.......++|+.+|+|-|-.+.
T Consensus 225 ~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 225 GPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 999999999999999999999996543
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.48 Score=50.02 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=28.4
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
++.++++++.||+|+|||..+...+-..+. .+..++|+ +..+|..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEe-ecCceecc
Confidence 356789999999999999987655444444 35666664 44455544
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.93 Score=55.83 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~---- 777 (1492)
.|.-++|.|+||+|||..+...+...... .+..++|++.-- -..|+..++..... ++.... ..|......
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm-~~~~i~~R~~~~~~---~v~~~~~~~g~l~~~~~~~~ 268 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEM-SAEQLAMRMLSSES---RVDSQKLRTGKLSDEDWEKL 268 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcC-CHHHHHHHHHHHhc---CCCHHHhccCCCCHHHHHHH
Confidence 67889999999999998877666654432 256677775532 23444444433221 222111 123332211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
....+..+.|. |++.+...+++.... ..+++||||=.+.+.. .+...+..+...++.+...+
T Consensus 269 ~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~---~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~- 344 (434)
T TIGR00665 269 TSAAGKLSEAPLYIDDTPGLTITELRAKARRLKRE---HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL- 344 (434)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 11223345542 333333333332211 2478999999998742 12233556667777666543
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.++++|-.
T Consensus 345 -~i~vi~lsql 354 (434)
T TIGR00665 345 -NVPVIALSQL 354 (434)
T ss_pred -CCeEEEEecc
Confidence 6777777754
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.8 Score=52.95 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=25.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+.+++.||+|+|||..+. ++...+.. .+.+++|+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~-~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE-SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH-cCCCEEEeeH
Confidence 468999999999998654 44444433 2677888764
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.87 Score=55.50 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.3
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||+.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987654
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.35 Score=53.36 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
..=++|.||||||||+. +.+|+..+.++....++=|---.+
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~~~~~HIlTIEDPIE 165 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINKHKAKHILTIEDPIE 165 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhccCCcceEEecCchH
Confidence 45788999999999876 457888888776666665544433
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.3 Score=53.94 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=24.6
Q ss_pred CcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcC
Q 043190 807 KKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLST 853 (1492)
Q Consensus 807 ~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSA 853 (1492)
.+.+++||||+|+|... ....++..|. ......++|+.+-
T Consensus 118 gr~KVIIIDEah~LT~~---A~NALLKtLE----EPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH---AFNAMLKTLE----EPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHH---HHHHHHHHHH----hcCCCeEEEEEEC
Confidence 46789999999998532 3344444443 2234566666553
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.2 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.0
Q ss_pred HHhhhcCC---CcEEEecCCCCCchHHHHHH
Q 043190 697 FHILYHTD---NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 697 i~~~~~~~---~~vli~apTGsGKT~~~~l~ 724 (1492)
+...+.++ ..+|++||.|+|||+++...
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 44444444 24889999999999987654
|
|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.53 Score=50.25 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=48.4
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.+|.++| +||+..+++|.++|+ |++++..++.++|..+-| ++..+..|++.++
T Consensus 3 ~~L~~Ip-GIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDIS-GVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred cccccCC-CcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 4688999 999999999999999 999999999999999966 6788999999887
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.1 Score=54.86 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=77.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~---- 777 (1492)
.|.-++|.|+||+|||..++..+...... .+..++|+..- .-..|+..++.... .|+.... ..|......
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-m~~~~l~~Rl~~~~---~~v~~~~~~~~~l~~~~~~~~ 267 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLE-MSAEQLGERLLASK---SGINTGNIRTGRFNDSDFNRL 267 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC-CCHHHHHHHHHHHH---cCCCHHHHhcCCCCHHHHHHH
Confidence 68899999999999998877665554322 25677777632 22334444432211 1222211 123332111
Q ss_pred ----hccCCCcEEEECc-----hhhhHhhhcccCccccCcccEEEEecccccCC----CCccHHHHHHHHHHHhhhccCC
Q 043190 778 ----MALLSADIIISTP-----EKWDGISRNWHSRNYVKKVGLMILDEIHLLGA----ERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 778 ----~~~~~~~Iiv~Tp-----e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~----~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
....+.++.|.-. +.+....++.... ...+++||||=.|.+.. .+...+..+...++.+...+
T Consensus 268 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~-- 343 (421)
T TIGR03600 268 LNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRK--KGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL-- 343 (421)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh--
Confidence 1122345555433 2233333322111 12588999999998753 23334456666777766543
Q ss_pred ceEEEEEcCC
Q 043190 845 AVRFIGLSTA 854 (1492)
Q Consensus 845 ~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 344 ~i~Vi~lsQl 353 (421)
T TIGR03600 344 DVPVVLLAQL 353 (421)
T ss_pred CCcEEEeccc
Confidence 6778888754
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.54 Score=54.13 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+.-+.|.||+|||||+.++..+...... +.+++|+..-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH
Confidence 56789999999999999988777766543 788889877655544
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.9 Score=51.09 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=27.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.+.+++.||+|+|||-.....--......+..+++|+...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4679999999999998654444444444455677776653
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.79 E-value=1 Score=57.16 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=69.7
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM 778 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~ 778 (1492)
-.|+.-.-|-|||......++..-... ..+..++++|+ ++..|...++ ....+.....+..++| ...+..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~g-r~kd~~ 230 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHG-RTKDKS 230 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEecc-cccccc
Confidence 457888899999998776665432221 34567888887 4455544444 2233333456777888 555666
Q ss_pred ccCCCcEEEECchhhhH-hhhcccCccccCcccEEEEecccccCCC
Q 043190 779 ALLSADIIISTPEKWDG-ISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 779 ~~~~~~Iiv~Tpe~l~~-l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
.+.+.+|+++||+.+.. -+. --..-.+|+||+|.+...
T Consensus 231 el~~~dVVltTy~il~~~~l~-------~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 231 ELNSYDVVLTTYDILKNSPLV-------KIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred hhcCCceEEeeHHHhhccccc-------ceeEEEEEeccccccCCc
Confidence 77788999999987652 111 123346999999988543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.2 Score=55.46 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=25.7
Q ss_pred cCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCC
Q 043190 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTA 854 (1492)
Q Consensus 806 l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSAT 854 (1492)
..+.+++||||+|+|+.. ..+.+++-|. ..+...++|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~---AaNALLKTLE----EPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH---AFNAMLKTLE----EPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHH---HHHHHHHhhc----cCCCCceEEEEeCC
Confidence 456889999999998532 3344443332 23446677776543
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.64 Score=49.98 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=24.3
Q ss_pred cccEEEEecccccCCCCcc---HHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 808 KVGLMILDEIHLLGAERGP---ILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 808 ~i~liViDEaH~l~~~~g~---~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.-+++||||||..-..+.. .....+..+ ..+...+..++++|-.+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l---~~hRh~g~diiliTQ~~~~ 128 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFL---AQHRHYGWDIILITQSPSQ 128 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGG---GGCCCTT-EEEEEES-GGG
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHH---HHhCcCCcEEEEEeCCHHH
Confidence 5579999999977543332 222333333 2333457788888877654
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.63 Score=51.02 Aligned_cols=18 Identities=50% Similarity=0.643 Sum_probs=15.7
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
+++++.||+|-|||+.+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 589999999999998653
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.5 Score=46.95 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+..+++.||+|+|||..+...+.+.+.. +..++|+.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEc
Confidence 57899999999999999877666555543 667788764
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.62 E-value=5.3 Score=45.49 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=70.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
..+++.|-.|+|||+...-....... .+.++++.+- .||-|.++.+.|.+++ |..+..-. ...+ .
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~--~G~D-----p 206 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGK--EGAD-----P 206 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccC--CCCC-----c
Confidence 46788999999999875543333322 3666666653 6899999999998875 65554321 1111 1
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc-C--CceEEEEEcCCCCC
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT-E--RAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~-~--~~~~ii~lSATl~~ 857 (1492)
+.|++ +.+ .. ..-+++++|++|=|-++... ..+..=+.++.++.... . +.--++.+-||.++
T Consensus 207 AaVaf------DAi-~~----Akar~~DvvliDTAGRLhnk--~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 207 AAVAF------DAI-QA----AKARGIDVVLIDTAGRLHNK--KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred HHHHH------HHH-HH----HHHcCCCEEEEeCcccccCc--hhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 11222 111 11 12357889999999877432 22333333333333211 1 11244555788876
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.64 Score=55.65 Aligned_cols=42 Identities=36% Similarity=0.460 Sum_probs=30.9
Q ss_pred CCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhcc
Q 043190 689 FNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFNT 731 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~~ 731 (1492)
+++.|.+.+..+++.. .=+++.||||||||+. +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4688888888877443 4678899999999986 3456665554
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.5 Score=53.29 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=88.7
Q ss_pred ecCCcccccceEEEEEeeCCc-hhH---HHHHhhHHHHHHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCcc
Q 043190 38 FDSSYRPIPLAQQYIGISEPN-FAA---RNELLSEICYKKVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLE 112 (1492)
Q Consensus 38 ~~~~~rpv~l~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~ 112 (1492)
++.+.++.||...+. +++.+ +.. +... .+.++.-+ .+|+.+|+|..--+....+-.+|...
T Consensus 1002 Id~E~~~~pLn~~i~-~Ppm~~FitdSgKL~~-----LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr-------- 1067 (1185)
T KOG0388|consen 1002 IDLENRHIPLNTTIY-VPPMNTFITDSGKLVV-----LDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR-------- 1067 (1185)
T ss_pred CCccccCccccccee-cCcHHhhhccccceee-----HHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh--------
Confidence 556678889877665 33221 111 1111 12222222 46889999987666554444444321
Q ss_pred ccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCcc-EEEeccccccccCCCcEEEEE
Q 043190 113 VFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLK-VLVCTATLAWGVNLPAHTVVI 191 (1492)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~-vlvaT~tla~Gvnlp~~~vVI 191 (1492)
++.---.-|...-.+|+.+...|....+- .|.+|-.-+.||||.|.+.||
T Consensus 1068 -----------------------------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTVi 1118 (1185)
T KOG0388|consen 1068 -----------------------------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVI 1118 (1185)
T ss_pred -----------------------------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEE
Confidence 11122345888889999999999987664 579999999999996655555
Q ss_pred eccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 192 KGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
- ||.. |.+---.|-+.||-|-|.-+.-.++.+.....
T Consensus 1119 F----YdSD---WNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1119 F----YDSD---WNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred E----ecCC---CCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 2 6643 33333455556666666545556666655444
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.4 Score=55.69 Aligned_cols=39 Identities=15% Similarity=0.418 Sum_probs=24.4
Q ss_pred cCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 806 l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
....+++||||+|+|.. ...+.++.-+. ..+...++|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~---~a~NALLKtLE----EPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR---HSFNALLKTLE----EPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH---HHHHHHHHHHH----cCCCCeEEEEe
Confidence 35788999999999853 23445554443 23345566665
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=89.45 E-value=2 Score=44.60 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=26.0
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCc---eEEEEcccHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDM---KVVYIAPLKAIVR 748 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~---~~l~i~P~r~La~ 748 (1492)
-++|.|+.|+|||......+.......... .+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 578999999999997654444433332212 3455555555444
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.4 Score=54.66 Aligned_cols=39 Identities=18% Similarity=0.475 Sum_probs=24.3
Q ss_pred CcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 807 KKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 807 ~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
.+.+++||||+|++... ....++..+. ..+....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~---a~naLLk~LE----epp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH---SFNALLKTLE----EPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH---HHHHHHHHHh----ccCCCeEEEEEE
Confidence 46789999999998532 3344444333 334566666654
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.54 Score=54.21 Aligned_cols=44 Identities=23% Similarity=0.176 Sum_probs=35.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.++-+.|.||+|||||+.++..+...... +.+++|+.+-.++-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH
Confidence 46788999999999999888777766543 788999988766554
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=2 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=17.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
.++++||.|+|||+++.. +.+.+.
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHh
Confidence 359999999999998754 444443
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.9 Score=48.71 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+.-++|+||+|+|||..+...+.+.+.. +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 56789999999999999888877776553 678888874
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=1 Score=58.18 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=23.8
Q ss_pred CcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 807 KKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 807 ~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
.+.+++||||||+|.. ...+.++.-|. ..+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~---eAqNALLKtLE----EPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR---SSFNALLKTLE----EPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH---HHHHHHHHHHh----ccCCCeEEEEE
Confidence 4678999999999842 23444444333 23445677665
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.2 Score=49.65 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=35.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
.+..+++.|++|+|||..+...+...+.+ +.+++|+.=... ..+..+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~-~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT-SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC-HHHHHHHH
Confidence 56789999999999999888777776553 778888876433 23444443
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.67 Score=53.86 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+.-+.|.||+|||||+.++..+...... +.+++|+..-.++-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH
Confidence 46788999999999999988887776553 789999988776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1492 | ||||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 0.0 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 1e-111 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 0.0 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 1e-110 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 3e-50 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 4e-50 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 3e-47 | ||
| 2q0z_X | 339 | Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. | 1e-40 | ||
| 3im1_A | 328 | Structure Of The C-Terminal Sec63 Unit Of Yeast Brr | 4e-30 | ||
| 3hib_A | 318 | Crystal Structure Of The Second Sec63 Domain Of Yea | 2e-27 | ||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 2e-19 | ||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 2e-19 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 3e-12 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 3e-11 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 7e-06 | ||
| 1gm5_A | 780 | Structure Of Recg Bound To Three-Way Dna Junction L | 2e-04 |
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 | Back alignment and structure |
|
| >pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 | Back alignment and structure |
|
| >pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 | Back alignment and structure |
|
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
|
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 678 bits (1752), Expect = 0.0
Identities = 184/758 (24%), Positives = 309/758 (40%), Gaps = 77/758 (10%)
Query: 661 HTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTIS 720
+ L + + L F P Q + N L+ PT SGKT+
Sbjct: 2 RVDELRVDERIKSTLKER------GIESFYPPQAEALKSGILEGKNALISIPTASGKTLI 55
Query: 721 AELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780
AE+AM+H K VYI PLKA+ E+ +++D ++G + TGDY L
Sbjct: 56 AEIAMVHRIL-TQGGKAVYIVPLKALAEEKFQEFQDW--EKIGLRVAMATGDYDSKDEWL 112
Query: 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYIS 839
DIII+T EK+D + R+ +++K V +++ DEIHL+G +RG LEVI++ M
Sbjct: 113 GKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML--- 167
Query: 840 SQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLE--VHIQGYPG--KF 895
+ IGLS + N +LA+WL RPV L V QG+
Sbjct: 168 ----GKAQIIGLSATIGNPEELAEWLNA-----ELIVSDWRPVKLRRGVFYQGFVTWEDG 218
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
R +S + Y AI K LIFV+ RR+ AL+L + S T + +
Sbjct: 219 SIDRFSSWEELVYDAIRKK---KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRAL-N 274
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
E + T++ L + ++ G+ HHAGL +R LVEE F I+ +V T TL+ G+
Sbjct: 275 ELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGI 334
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV--HEPKKS 1073
N PA VII+ Y PI ++ QM+GRAGRP+YD+ G+ +I+ +P++
Sbjct: 335 NTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV 392
Query: 1074 FYKKFLYEPFPVESSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAY 1131
+P + S L ++ L A I + E+ + ++S T+ +
Sbjct: 393 MNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ---RKDT 449
Query: 1132 YGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT-VEPTMLGTIASQYYLSYVTVS 1190
Y LE+ ++N L ++ ++++ + + P LG ++ Y+ T
Sbjct: 450 YSLEE------------KIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAK 497
Query: 1191 MFGSNIGP---DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNNRL- 1244
MF + D + H++S + E E R D+ +
Sbjct: 498 MFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYIS 557
Query: 1245 ---------DDPHVKANLLFQAHFSRLDLPI-----SDYVTDLKSVLDQSIRIIQAMIDI 1290
K L+ A + + S D+ +++ + ++ ++ +I
Sbjct: 558 GYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEI 617
Query: 1291 CANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDI 1350
G L V G+ E L P + L G +++ +
Sbjct: 618 AKVLGAYEIVDYLETLRVRVKYGIREE-LIPLMQLPLVGRRRARALYNSGFRSIEDISQA 676
Query: 1351 PKENLQTVIGNFPVSRLHQDLQRFPRIQVKLRLQRRDI 1388
E L + G + + + +F VK+ + R
Sbjct: 677 RPEELLKIEG-IG-VKTVEAIFKFLGKNVKISEKPRKS 712
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 429 bits (1104), Expect = e-133
Identities = 104/586 (17%), Positives = 209/586 (35%), Gaps = 61/586 (10%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+ +I+GLSAT+ N E+A++L S +RP+ L + +
Sbjct: 163 LAHMLGKAQIIGLSATIGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVTWE 216
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + V D++R+ A++FV+ R+ + A +L + +
Sbjct: 217 DGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLT----KPEIRA 272
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
L N+ L + V HHAG+ R +R L E F +G++K +V T TL+
Sbjct: 273 LNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSA 332
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHD--K 235
G+N PA V+I+ Y G + ++++ GRAGRP++D GEGII+++ D +
Sbjct: 333 GINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390
Query: 236 LAYYLRLLTSQLPIESQFI--SSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNP 293
+ + SQ S+L+ + A +A + V+E ++ T+ + +
Sbjct: 391 EVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ---RK 447
Query: 294 LAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYI 353
Y + + + L + + + LG + YI
Sbjct: 448 DTYSL---------------EEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYI 491
Query: 354 QYSSVETYNEMLRRHM---NDSEVIEMVSHSSEFENIVVRDEEQNELETLVQ-------- 402
+ + + + + + N + ++S + + E LE
Sbjct: 492 DPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYF 551
Query: 403 ----TLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFS-----LVSDAAYISASLARIM 453
+ K ++++ +I+ D I + ++
Sbjct: 552 DDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLV 611
Query: 454 RALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLD 513
+L E G E+ ++ V I PL Q + R L G
Sbjct: 612 YSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPL-VGRRRARALYNSG--FR 668
Query: 514 RLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITRTV 559
++++ + L++ G + + F + + P T+
Sbjct: 669 SIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVKISEKPRKSTL 714
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 668 bits (1726), Expect = 0.0
Identities = 176/709 (24%), Positives = 302/709 (42%), Gaps = 73/709 (10%)
Query: 666 DLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAM 725
+ V L P Q + ++ + N+LL PT +GKT+ AE+AM
Sbjct: 9 SISSYAVGILKEE------GIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAM 61
Query: 726 LHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADI 785
+ K +Y+ PL+A+ E+ +K ++G + TGDY L DI
Sbjct: 62 VREA--IKGGKSLYVVPLRALAGEKYESFKKW--EKIGLRIGISTGDYESRDEHLGDCDI 117
Query: 786 IISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTER 844
I++T EK D + RN +++K V +++DEIHLL +E RG LE++V++MR ++
Sbjct: 118 IVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA--- 172
Query: 845 AVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPG-KFYCPRMNSM 903
+R IGLS N ++A+WL + RPVPL + + + ++
Sbjct: 173 -LRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTS 226
Query: 904 NKPAYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961
+ + + + VL+F S+RR TA+ L A E+ +
Sbjct: 227 RRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENE-- 284
Query: 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL 1021
+ L + ++ G HHAGL + R +VE+ F I+V+V T TLA GVNLPA
Sbjct: 285 --GEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARR 342
Query: 1022 VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-YKKFLY 1080
VI++ +DG +KR +++ QM GRAGRP D+ G+A+I+V + + K++++
Sbjct: 343 VIVRSLYRFDGYSKRI---KVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIF 399
Query: 1081 -EPFPVESSL--RDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT 1137
EP + S L L H + I G E+ + + T+ F++ I+ +Y
Sbjct: 400 GEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYE----- 454
Query: 1138 EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNI- 1196
++ LE+ G V + PT LG++ S+ Y+ +T +F +
Sbjct: 455 ------------LERVVRQLENWGMVVEAAH-LAPTKLGSLVSRLYIDPLTGFIFHDVLS 501
Query: 1197 GPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQ----RVRFAVDNN---RLDDPHV 1249
+ S LH++ + + L VR + E + + D + V
Sbjct: 502 RMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEV 561
Query: 1250 KANLLFQAHFSRLDLP-ISD----YVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCM 1304
K L + D I DL+ +++ + + AM I G S S
Sbjct: 562 KTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVS---- 617
Query: 1305 HLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE 1353
L + + G+ E L + L GI + ++ ++
Sbjct: 618 GLTERIKHGVKEE-LLELVRIRHIGRVRARKLYNAGIRNAEDIVRHREK 665
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 412 bits (1060), Expect = e-127
Identities = 112/561 (19%), Positives = 217/561 (38%), Gaps = 72/561 (12%)
Query: 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-FAA 61
+ +R++GLSAT PN E+A++L + ++ S +RP+PL + + F
Sbjct: 168 RMNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDG 221
Query: 62 RNELLSEICYKKVV-DSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ ++++V + + + +VF +R+ KTA KL + +Y + E
Sbjct: 222 AFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKA--- 278
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
I ++ ++ L E HHAG+L R + E F G +KV+V T TLA
Sbjct: 279 ----ILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAA 334
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIIT-SHDKL 236
GVNLPA V+++ +D G + + + + GRAGRP D GE III D+
Sbjct: 335 GVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391
Query: 237 AYYLRLLTSQ-LPIESQF--ISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNP 293
R + + I S+ + L+ + + + G ++E + T+ + +++
Sbjct: 392 IAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL 451
Query: 294 LAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYI 353
+ R L+ M+ ++ + T+LG + S YI
Sbjct: 452 --------------------SYELERVVRQLENWGMV---VEAAHLAPTKLGSLVSRLYI 488
Query: 354 QYSSVETYNEMLRR-HMNDSEVIEMVSHSSEFENIVVRDEEQNELET-------LVQTLC 405
+ ++++L R ++D + ++ + + E + VR + E L
Sbjct: 489 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPS 548
Query: 406 PVEVKGGPSNKHGKISILIQLYISRGWIDTFSLV-----SDAAYISASLARIMRALFETC 460
V+ K ++ ++ +I D D I + + A+
Sbjct: 549 DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIA 608
Query: 461 LRRGWCEMSLF--MLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERG-ADLDRLQE 517
G +S +++ + L + + RKL G + + +
Sbjct: 609 EEVGNTSVSGLTERIKHG------VKEELLELVRIRH-IGRVRARKLYNAGIRNAEDIVR 661
Query: 518 MEEKDIGALIRYTPGGRLVKQ 538
EK + R R+V+
Sbjct: 662 HREKVASLIGRGI-AERVVEG 681
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 664 bits (1716), Expect = 0.0
Identities = 168/732 (22%), Positives = 298/732 (40%), Gaps = 87/732 (11%)
Query: 665 LDLKPLPVTALGN--NIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTIS 720
L+L+ +P+ L N+ E + NP QT+ N +LL +PTGSGKT+
Sbjct: 3 LELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLI 62
Query: 721 AELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780
AE+ ++ ++ K +Y+ PL+A+ E+ +KD +G ++ +GDY D L
Sbjct: 63 AEMGIISFLL-KNGGKAIYVTPLRALTNEKYLTFKDW--ELIGFKVAMTSGDYDTDDAWL 119
Query: 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYIS 839
+ DIII+T EK D + R+ ++ +V +LDE+H L ERGP++E + R +
Sbjct: 120 KNYDIIITTYEKLDSLWRHR--PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRR- 176
Query: 840 SQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK----- 894
+ LS ++N +A WLG + RPVPL + K
Sbjct: 177 -------NLLALSATISNYKQIAKWLGA-----EPVATNWRPVPLIEGVIYPERKKKEYN 224
Query: 895 -----FYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ 949
+++ + + + S VL+F +SR+ TAL + +
Sbjct: 225 VIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEN 284
Query: 950 FLGMPEEDLQMVLS--QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVC 1007
L + L + + L+ + G+ HHAGL+ R L+EE F KI+V+V
Sbjct: 285 ALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVA 344
Query: 1008 TSTLAWGVNLPAHLVIIKGTEYYDGKTKR-YVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066
T TLA GVNLPA VII ++ K Y + PI + QM GRAGRP +DQ G+++++
Sbjct: 345 TPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404
Query: 1067 VH---EPKKSFYKKFLYEPFPVESSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYL 1121
V + + F K L + P+ES L + + + + ++ ++ + L
Sbjct: 405 VRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLL 464
Query: 1122 FRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQ 1181
++L + L + +K +T T G +
Sbjct: 465 AKQL--------------------VDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVAD 504
Query: 1182 YYLSYVTVSMFGSNIGPDTSLEV--FLHILSGASEYDELPVRHNEDNHNEALSQRVR--- 1236
Y++ T + + + +LH+L+ + + V NE+ L + +
Sbjct: 505 LYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCEL 564
Query: 1237 -----FAVDNNRLDDPHVKANLLFQAHFSRLDLP-ISD----YVTDLKSVLDQSIRIIQA 1286
+ D L +K L+ + +D I DL+++++ + +
Sbjct: 565 LIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYS 624
Query: 1287 MIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRAR-----GI 1341
+ + L V G+ E + + +G RAR GI
Sbjct: 625 AYHLSRELKLNEHADKLRILNLRVRDGIKEE------LLELVQISGVGRKRARLLYNNGI 678
Query: 1342 STVQQLLDIPKE 1353
+ ++ P +
Sbjct: 679 KELGDVVMNPDK 690
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-118
Identities = 111/540 (20%), Positives = 205/540 (37%), Gaps = 66/540 (12%)
Query: 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE------ 56
+ ++ LSAT+ NY ++A++L P +++RP+PL + I
Sbjct: 171 IRAKRRNLLALSATISNYKQIAKWLGAEP------VATNWRPVPLIEGVIYPERKKKEYN 224
Query: 57 ---PNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEV 113
+ + + +DSL + Q +VF +SRK TA K+ + E
Sbjct: 225 VIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEN 284
Query: 114 FNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLV 173
++ QL I+ + + L L V HHAG+ ++ R L E F + +KV+V
Sbjct: 285 ALSEILKQLDDIE-EGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIV 343
Query: 174 CTATLAWGVNLPAHTVVIKGTQLYDPKA-GGWRDLGMLDI---FGRAGRPQFDRSGEGII 229
T TLA GVNLPA TV+I ++ K G + ++ +++ GRAGRP FD+ GE I+
Sbjct: 344 ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIV 403
Query: 230 ITSHDKLA---YYLRLLTSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTY 284
+ + + +L+ PIES+ S + L ++ + K+ + +
Sbjct: 404 VVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESL 463
Query: 285 LSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTEL 344
L+ ++ A R L + ++ + F T
Sbjct: 464 LAKQLV-----------------------DVYFDRAIRWLLEHSFIKEE--GNTFALTNF 498
Query: 345 GRIASHFYIQYSSVETYNEMLRRHMNDSE--VIEMVSHSSEFENIVVRDEEQNELETLVQ 402
G+ + YI + + + L H E + +++ + + + V E+ EL L++
Sbjct: 499 GKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLE 558
Query: 403 TL---CPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVS----------DAAYISASL 449
L +E I+ L I + W+D + D + ++
Sbjct: 559 DLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETM 618
Query: 450 ARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERG 509
+ + + E + + V I L Q + + R L G
Sbjct: 619 DWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISG-VGRKRARLLYNNG 677
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 236 bits (602), Expect = 2e-69
Identities = 92/326 (28%), Positives = 179/326 (54%), Gaps = 5/326 (1%)
Query: 1167 EDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226
V P LG IA+ YY++Y T+ +F ++ T + + I+S A+EY+ +P+RH+EDN
Sbjct: 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDN 69
Query: 1227 HNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQA 1286
L+Q+V ++N + +DPHVK NLL QAH SR+ L ++ +D + +L ++IR+IQA
Sbjct: 70 LLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQA 128
Query: 1287 MIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQ 1346
+D+ +++GWLS ++ M L QMV Q +W +DS L P ++ + +G+ +V
Sbjct: 129 CVDVLSSNGWLSPALAAMELAQMVTQAMW-SKDSYLKQLPHFTSEHIKRCTDKGVESVFD 187
Query: 1347 LLDIPKENLQTVIGNFP--VSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMN 1404
++++ E ++ ++ + + R+P I++ + +D + + +
Sbjct: 188 IMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGP-VVVLVQLER 246
Query: 1405 SWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTHMELPSGITTFQG 1464
+ T A FP+ ++E WW+V+G+ ++ L ++KR++ + ++ + T
Sbjct: 247 EEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHN 306
Query: 1465 MKLVVVSDCYLGFEQEHSIEALVEQS 1490
L +SD Y+G +QE+ V+++
Sbjct: 307 YTLYFMSDAYMGCDQEYKFSVDVKEA 332
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 191 bits (485), Expect = 8e-54
Identities = 74/333 (22%), Positives = 146/333 (43%), Gaps = 20/333 (6%)
Query: 329 MMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIV 388
+ LG IA+++YI Y+++E ++ L +IE++S+++E+ENI
Sbjct: 3 HHHHHHSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIP 62
Query: 389 VRDEEQNELETLVQTLCPVEVKGGPSNK-HGKISILIQLYISRGWIDTFSLVSDAAYISA 447
+R E N L L Q P ++ N H K ++L+Q ++SR + L SD I +
Sbjct: 63 IRHHEDNLLRQLAQ-KVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILS 120
Query: 448 SLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEE 507
R+++A + GW +L +E + V + +W L+Q I R ++
Sbjct: 121 KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK 180
Query: 508 RGADLDRLQEMEEKDIGALIRYTPG-GRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAI 566
+ + EME+++ AL++ T V ++ +P+I+LS V + +
Sbjct: 181 GVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVV 240
Query: 567 TPEFTWKDHFHGA----------AQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLS 616
+ ++ G + WW+++ D++S+ + + TL ++ KL
Sbjct: 241 LVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK----AKVKLD 296
Query: 617 FTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISF 649
F P Y + +SD+++ + Y S
Sbjct: 297 FVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 327
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 222 bits (566), Expect = 8e-65
Identities = 89/333 (26%), Positives = 174/333 (52%), Gaps = 10/333 (3%)
Query: 1161 GCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPV 1220
G ++ TE + G IAS Y +S+ T+ F S++ ++L+ L++LS A E++ +P+
Sbjct: 1 GAMEATEI-ISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPL 59
Query: 1221 RHNEDNHNEALSQRVRFAVDNN-RLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQ 1279
R + LS+R+ + K LL QA+FSRL+LP+ D+ DLK +L++
Sbjct: 60 RKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEK 118
Query: 1280 SIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRAR 1339
+ +I ++DI + +G+L ++ T M L QM++QG+W + D+ L P NN +L +
Sbjct: 119 VVPLINVVVDILSANGYL-NATTAMDLAQMLIQGVW-DVDNPLRQIPHFNNKILEKCKEI 176
Query: 1340 GISTVQQLLDIPKENLQTVIGNFP--VSRLHQDLQRFPRIQVKLRLQRRD-IDGENSLTL 1396
+ TV ++ + E ++ ++++ + +P +++ L D + +
Sbjct: 177 NVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKI 236
Query: 1397 NIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTH-MEL 1455
I++ + +N + + ++P K E+WWLVLG + ELYA+K+++ + + +E
Sbjct: 237 TIQLTRDVEPEN-LQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEF 295
Query: 1456 PSGITTFQGMKLVVVSDCYLGFEQEHSIEALVE 1488
+ + + + V D YL ++E S E V+
Sbjct: 296 DTPTSGKHNLTIWCVCDSYLDADKELSFEINVK 328
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 169 bits (428), Expect = 2e-46
Identities = 56/330 (16%), Positives = 129/330 (39%), Gaps = 22/330 (6%)
Query: 334 EKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393
E + G IASH+ + + +++++ L ++ ++S + EFE++ +R +
Sbjct: 4 EATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGD 63
Query: 394 QNELETLVQTL-CPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARI 452
+ L L + L + K+ +L+Q Y SR + +D I + +
Sbjct: 64 RALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPL 122
Query: 453 MRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERG-AD 511
+ + + G+ + M + + + + +W +PLRQ +IL K +E
Sbjct: 123 INVVVDILSANGYLNATTAM-DLAQMLIQGVWDVDNPLRQIPH-FNNKILEKCKEINVET 180
Query: 512 LDRLQEMEEKDIGALIRYTPG-GRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEF 570
+ + +E+++ ++ T V ++ +P+++L+ +++ + + IT +
Sbjct: 181 VYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQL 240
Query: 571 TWKDHFHGAA-----------QRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTV 619
T + WW+++ + +Y + TL + +L F
Sbjct: 241 TRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTL---NKETQQYELEFDT 297
Query: 620 PIFEPHPPQYYIRAVSDSWLHAEAFYCISF 649
P I V DS+L A+
Sbjct: 298 P--TSGKHNLTIWCVCDSYLDADKELSFEI 325
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 8e-45
Identities = 107/488 (21%), Positives = 193/488 (39%), Gaps = 94/488 (19%)
Query: 666 DLKPLPVTALGNNIYEALYNFSHFNPIQTQ-IFHILYHTDNNVLLGAPTGSGKTISAELA 724
+ P+ Y F+ +P Q I I +VL+ A T +GKT+ AE A
Sbjct: 65 NYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYA 121
Query: 725 MLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSAD 784
+ + +V+Y +P+KA+ ++ + +G MTGD T + A
Sbjct: 122 IAQSLK--NKQRVIYTSPIKALSNQKYRELLAEF-GDVGL----MTGDITINP----DAG 170
Query: 785 IIISTPEKWDGISRN--WHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQ 841
++ T E R+ + +++V +I DE+H + ERG + E + +
Sbjct: 171 CLVMTTEIL----RSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP----- 221
Query: 842 TERAVRFIGLSTALANAGDLADWLG-VGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900
VR++ LS + NA + A+W+ + + RP PL+ ++ G +
Sbjct: 222 --DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVV 279
Query: 901 NSMN-------KPAYAAI--------------------CTHSPTK--------------- 918
+ + + A A+I K
Sbjct: 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW 339
Query: 919 -----PVLIFVSSRRQTRLTALDL--IQFAASDETP-------RQFLGMPEEDLQMVLSQ 964
PV++F S+R AL + + F + DE +PE D + L Q
Sbjct: 340 KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE--LPQ 397
Query: 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVII 1024
+ +++ L+ GIG+HH+GL + ++E LF ++VL T T + G+N+PA V+
Sbjct: 398 I--KHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455
Query: 1025 KGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE--PKKSFYKKFLYEP 1082
+DG+ R + +QM GRAGR D G ++++ E + +
Sbjct: 456 TSVRKWDGQQFR--WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQA 513
Query: 1083 FPVESSLR 1090
++S+
Sbjct: 514 DRLDSAFH 521
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 4e-17
Identities = 69/279 (24%), Positives = 112/279 (40%), Gaps = 55/279 (19%)
Query: 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYI------------- 52
+R V LSAT+PN +E A+++ +++RP PL
Sbjct: 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 281
Query: 53 --GISEPNFAARNELLSE-----------------------------ICYKKVVDSL--R 79
E NF +S K+V + +
Sbjct: 282 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK 341
Query: 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDL-----EVFNNDTHPQLSLIKKDVMKSRN 134
+ + +VF S++D + A K+ L +D ++FNN L + D +
Sbjct: 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA---LLPETDRELPQI 398
Query: 135 KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT 194
K ++ L +G+HH+G+L + + E LF EG LKVL T T + G+N+PA TVV
Sbjct: 399 KHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 458
Query: 195 QLYDPKAGGWRDLG-MLDIFGRAGRPQFDRSGEGIIITS 232
+ +D + W G + + GRAGR D G I++
Sbjct: 459 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-44
Identities = 107/488 (21%), Positives = 193/488 (39%), Gaps = 94/488 (19%)
Query: 666 DLKPLPVTALGNNIYEALYNFSHFNPIQTQ-IFHILYHTDNNVLLGAPTGSGKTISAELA 724
+ P+ Y F+ +P Q I I +VL+ A T +GKT+ AE A
Sbjct: 163 NYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYA 219
Query: 725 MLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSAD 784
+ + +V+Y +P+KA+ ++ + +G MTGD T + A
Sbjct: 220 IAQSLK--NKQRVIYTSPIKALSNQKYRELLAEF-GDVGL----MTGDITINP----DAG 268
Query: 785 IIISTPEKWDGISRN--WHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQ 841
++ T E R+ + +++V +I DE+H + ERG + E + +
Sbjct: 269 CLVMTTEIL----RSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP----- 319
Query: 842 TERAVRFIGLSTALANAGDLADWLG-VGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900
VR++ LS + NA + A+W+ + + RP PL+ ++ G +
Sbjct: 320 --DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVV 377
Query: 901 NSMN-------KPAYAAI--------------------CTHSPTK--------------- 918
+ + + A A+I K
Sbjct: 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW 437
Query: 919 -----PVLIFVSSRRQTRLTALDL--IQFAASDETP-------RQFLGMPEEDLQMVLSQ 964
PV++F S+R AL + + F + DE +PE D + L Q
Sbjct: 438 KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE--LPQ 495
Query: 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVII 1024
+ +++ L+ GIG+HH+GL + ++E LF ++VL T T + G+N+PA V+
Sbjct: 496 I--KHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 553
Query: 1025 KGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE--PKKSFYKKFLYEP 1082
+DG+ R + +QM GRAGR D G ++++ E + +
Sbjct: 554 TSVRKWDGQQFR--WVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQA 611
Query: 1083 FPVESSLR 1090
++S+
Sbjct: 612 DRLDSAFH 619
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 3e-17
Identities = 69/279 (24%), Positives = 112/279 (40%), Gaps = 55/279 (19%)
Query: 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYI------------- 52
+R V LSAT+PN +E A+++ +++RP PL
Sbjct: 320 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 379
Query: 53 --GISEPNFAARNELLSE-----------------------------ICYKKVVDSL--R 79
E NF +S K+V + +
Sbjct: 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK 439
Query: 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDL-----EVFNNDTHPQLSLIKKDVMKSRN 134
+ + +VF S++D + A K+ L +D ++FNN L + D +
Sbjct: 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA---LLPETDRELPQI 496
Query: 135 KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT 194
K ++ L +G+HH+G+L + + E LF EG LKVL T T + G+N+PA TVV
Sbjct: 497 KHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 556
Query: 195 QLYDPKAGGWRDLG-MLDIFGRAGRPQFDRSGEGIIITS 232
+ +D + W G + + GRAGR D G I++
Sbjct: 557 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 7e-23
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFL---------GMPEEDLQMVLSQVTDQN 969
P+++FV S+++ A L + + + + +ED L Q+
Sbjct: 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRD--LPQI--LK 393
Query: 970 LRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029
R L+ GI +HH GL + L+E LF+ I+VL T T A G+NLP VI
Sbjct: 394 TRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRK 453
Query: 1030 YDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK---KSFYKKFLYEPFPVE 1086
+DG R + QM GRAGR D G +++ + +F + + P ++
Sbjct: 454 HDGNGLRE--LTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQ 511
Query: 1087 SSLR 1090
S R
Sbjct: 512 SQFR 515
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 3e-20
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 14/194 (7%)
Query: 71 YKKVVDSLRQGHQ--AMVFVHSRKDTVKTAQKL-----VDLARRYEDLEVFNNDTHPQLS 123
+ ++V+ LR+ +VFV S+K + A L + + +
Sbjct: 324 WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSIT---R 380
Query: 124 LIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVN 183
L K+D + L + VHH G+L + L E LFS+G +KVL T T A G+N
Sbjct: 381 LKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLN 440
Query: 184 LPAHTVVIKGTQLYDPKAGGWRDLG-MLDIFGRAGRPQFDRSGEGIIITSHDKL--AYYL 240
LP TV+ + +D G + GRAGR D +G I++ + L A +
Sbjct: 441 LPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500
Query: 241 RLLTSQL-PIESQF 253
+ ++SQF
Sbjct: 501 EVTMGVPTRLQSQF 514
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 4e-14
Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 35/223 (15%)
Query: 691 PIQTQ-IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749
Q + ++H+ ++V + A T +GKT+ AE A+ ++ K +Y +P+KA+ +
Sbjct: 42 TFQKEAVYHLEQG--DSVFVAAHTSAGKTVVAEYAIAMAH--RNMTKTIYTSPIKALSNQ 97
Query: 750 RMNDWKDRLVSQLGKEMVE-MTGDYT--PDLMALLSADIIISTPEKWDGISRNWHSRN-- 804
+ D+K+ + +TGD PD A+ +I T E I R+ R
Sbjct: 98 KFRDFKET----FDDVNIGLITGDVQINPD------ANCLIMTTE----ILRSMLYRGAD 143
Query: 805 YVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLAD 863
++ V +I DE+H + +RG + E ++ + + V+FI LS + N + A+
Sbjct: 144 LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP-------QHVKFILLSATVPNTYEFAN 196
Query: 864 WLGVGEIGLFN-FKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905
W+G + RPVPLE++I + K P +N ++
Sbjct: 197 WIGRTKQKNIYVISTPKRPVPLEINI--WAKKELIPVINQNSE 237
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 5e-16
Identities = 89/616 (14%), Positives = 183/616 (29%), Gaps = 166/616 (26%)
Query: 586 IVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSD------SWL 639
I+ E DHI S + + + V + +L
Sbjct: 45 ILSKEEIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 640 HAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYN----FSHFN-PIQT 694
TE P +T + + LYN F+ +N
Sbjct: 95 -MSPI----------------KTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 695 QIFHI------LYHTDNNVLLGAPTGSGKTI-SAELAMLHLFNTQSDMKVVYIAPLKAIV 747
+ L N ++ G GSGKT + ++ + + + D K+ ++ +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLN-----L 189
Query: 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVK 807
+ + + ++ L K + ++ ++T + S++I + + R S+ Y
Sbjct: 190 KNCNSP--ETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 808 KVGLMILDEIHLLGAERGPILE--------VIVSR----MRYISSQTERAVRFIGLSTAL 855
L++L + + ++ +R ++S+ T + S L
Sbjct: 246 --CLLVLLNV-----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 856 ANA---GDLADWLGVGEIGLFNFKPSVRPV-PLEV------------HIQGYPGKFYCPR 899
L +L L V P + + C +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDK 354
Query: 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG-----MP 954
+ ++ + + + +P R+ L F S P L +
Sbjct: 355 LTTIIESSLNVL------EPAEY----RKMFD----RLSVFPPSAHIPTILLSLIWFDVI 400
Query: 955 EEDLQMVLSQVTDQNL--RQTLQFGIGLHHAGL-----NDKDRSLVEELFANNKIQVLVC 1007
+ D+ +V++++ +L +Q + I + L + + +L + + I
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 1008 TSTLA-------WGVNLPAHLVIIKGTEYYDGKTKRYVDF------------------PI 1042
+ L + ++ HL I+ E ++DF I
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 1043 TDILQMMGRAGRPQYDQHGKAVILVHEPKKSF----YKKFL--YEPFPVESSLRDQLHDH 1096
+ LQ + Y + I ++PK FL E + S D L
Sbjct: 521 LNTLQQLKF-----YKPY----ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 1097 FNAEIVSGTIFHKEDA 1112
AE IF E+A
Sbjct: 572 LMAE--DEAIF--EEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-05
Identities = 44/273 (16%), Positives = 84/273 (30%), Gaps = 89/273 (32%)
Query: 1256 QAHFSRLD-LPI--SDYVTDL--KSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQM- 1309
+ + D L + +V + K V D I+ S H++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--------------SKEEIDHIIMSK 58
Query: 1310 -VMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLD-------------IPKENL 1355
+ G L TL ++ VQ+ ++ I E
Sbjct: 59 DAVSGTLR---------------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 1356 Q----TVIGNFPVSRLHQDLQRF-----PRIQVKLRLQR--RDIDGENSLTLNIRMDKMN 1404
Q T + RL+ D Q F R+Q L+L++ ++ ++ + D +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DGVL 159
Query: 1405 -SWKNTSRAFALRFPKIK----DEAWWLVLGNTNTSE--------LYALKRISFSDRLNT 1451
S K K++ + +WL L N N+ E L +++ R +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 1452 HMELPSGITTFQGMK------------LVVVSD 1472
+ I + Q L+V+ +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-05
Identities = 73/492 (14%), Positives = 124/492 (25%), Gaps = 147/492 (29%)
Query: 1056 QYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHY 1115
++ K ++ V E F F + V+ + L I+
Sbjct: 13 EHQYQYKDILSVFEDA--FVDNF--DCKDVQDMPKSILSKEEIDHIIMSK--DAVSGTLR 66
Query: 1116 LSWTYL---------FRRLAINPAY------YGLEDTEAEGL----SSYLSRLVQNT--- 1153
L WT L F + Y E + + RL N
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQV 125
Query: 1154 -----------FEDLEDSGCVKMTEDTVEPT-----MLG----TIASQYYLSYVTVSMFG 1193
+ L + E +LG +A LSY
Sbjct: 126 FAKYNVSRLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 1194 SNI-----GPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPH 1248
I S E L +L Y P + +H+ + R+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSI---------- 230
Query: 1249 VKANLLFQAHFSRLDLPISDYVTDLKSVLD--QSIRIIQAMIDI-C---------ANSGW 1296
QA RL L Y L VL Q+ + A ++ C + +
Sbjct: 231 -------QAELRRL-LKSKPYENCL-LVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDF 280
Query: 1297 LSSSITCMHLLQMVMQGLWFEQDSALWMF-----------P---CMNN----DLLGTLRA 1338
LS++ T L D + P N ++
Sbjct: 281 LSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 1339 RGISTVQQLLDIPKENLQTVIGNF-----P--VSRLHQDLQRFP---RIQVKLRLQR--R 1386
G++T + + L T+I + P ++ L FP I L L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWF 397
Query: 1387 DIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYAL---KRI 1443
D+ + M +N S E +T + ++ ++
Sbjct: 398 DVIKSDV------MVVVNKLHKYSLV----------EKQP----KESTISIPSIYLELKV 437
Query: 1444 SFSDRLNTHMEL 1455
+ H +
Sbjct: 438 KLENEYALHRSI 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-04
Identities = 46/329 (13%), Positives = 93/329 (28%), Gaps = 114/329 (34%)
Query: 46 PLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLA 105
P I S + A + + K+ + ++ + +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLT-------------TIIESSLN-VLEPAEYR 372
Query: 106 RRYEDLEVFNNDTH-PQ--LSL-----IKKDVM----KSRNKDLIE--LFGLAVGVH--- 148
+ ++ L VF H P LSL IK DVM K L+E + +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 149 -------------HAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVN-----LPAHTVV 190
H ++ + + S+ L+ + + H
Sbjct: 433 LELKVKLENEYALHRSIVDHYN-IPKTFDSDDLIPP--------YLDQYFYSHIGHH--- 480
Query: 191 IKGTQLYDPKAGGWRDLGMLDIFG------RAGRPQFDRSGEGIIITSHDKLAYYLRLLT 244
+K + + + +R + LD F R ++ SG I+ T L +Y +
Sbjct: 481 LKNIEHPE-RMTLFRMV-FLD-FRFLEQKIRHDSTAWNASG-SILNTLQQ-LKFYKPYIC 535
Query: 245 SQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVI 304
P + ++++ D L K+ +I
Sbjct: 536 DNDPKYERLVNAILDFL---------------------------PKIEE--------NLI 560
Query: 305 ADPSLSLKQRALVT-------DAARALDK 326
L + AL+ +A + + +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 8e-15
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 705 NNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVRERMNDWKDRLVS 760
N+++ PTGSGKT A + + KV+ + +V + +
Sbjct: 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108
Query: 761 QLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKW----DGISRNWHSRNYVKKVGLMI 813
+ + ++ ++GD + + S DIIIST + + + + L+I
Sbjct: 109 KWYR-VIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLII 167
Query: 814 LDEIH 818
+DE H
Sbjct: 168 IDECH 172
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-12
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 706 NVLLGAPTGSGKTISAELAM---LHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762
N ++ APTG GKT + L L F KVV+ A + ++ + +L
Sbjct: 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYF-ERL 79
Query: 763 GKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819
G + ++G + + + DIII TP+ N + + LMI DE H
Sbjct: 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN-GAIPSLSVFTLMIFDECHN 138
Query: 820 LGAERGPILEVIVSRMRYISSQTERA--VRFIGLSTALAN 857
+ I+ R R + +GL+ ++
Sbjct: 139 --TSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 66/392 (16%), Positives = 127/392 (32%), Gaps = 57/392 (14%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
Q + ++ PTGSGKT A A+ L + + P A+ +
Sbjct: 96 DYQEKALERWLVDKRGCIV-LPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQ- 148
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
WK+RL + + E +G + +ST +D ++ +
Sbjct: 149 ---WKERLGIFGEEYVGEFSGRIKE------LKPLTVST---YDSAYV--NAEKLGNRFM 194
Query: 811 LMILDEIHLLGAER-GPILEVIVSRMRYISSQT-ERA-------------VRFIGLSTAL 855
L+I DE+H L AE I ++ ++ R + T ER F +L
Sbjct: 195 LLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSL 254
Query: 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHS 915
A LA + V E + + + + +
Sbjct: 255 AG-KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYD 313
Query: 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQ 975
+ + R+ L +D ++ ++ + R +
Sbjct: 314 ERAYEALRAWEEARRIAFNSKNKIRKL-----REILERHRKDKIIIFTRHNELVYRISKV 368
Query: 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA--HLVIIKGTEYYDGK 1033
F I + ++R + E F + + +V + L G+++P VI+ G+
Sbjct: 369 FLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS-----G 423
Query: 1034 TKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065
+ R + +Q +GR RP +AV+
Sbjct: 424 SAR-------EYIQRLGRILRP-SKGKKEAVL 447
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 63.4 bits (153), Expect = 3e-10
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQ---SDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762
N L+ APTGSGKT + L H F KVV++A + ++ N +K +
Sbjct: 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF-ERQ 82
Query: 763 GKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819
G + ++G+ ++ + +DII+ TP+ S + + LMI DE H
Sbjct: 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILV-NSFEDGTLTSLSIFTLMIFDECHN 141
Query: 820 LGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA 858
P ++ + + + + +GL+ ++
Sbjct: 142 TTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 179
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 62.3 bits (150), Expect = 1e-09
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 8/160 (5%)
Query: 706 NVLLGAPTGSGKTISAELAM---LHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762
N ++ APTG GKT + L L F KVV+ A + + + + +
Sbjct: 30 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF-ERH 88
Query: 763 GKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819
G + ++G ++ + + DIII TP+ + + + LMI DE H
Sbjct: 89 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDECHN 147
Query: 820 LGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAG 859
+ + + + + + + IGL+ ++
Sbjct: 148 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 61.9 bits (149), Expect = 1e-09
Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%)
Query: 684 YNFSHFNPIQTQIF-HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---SDMKVVY 739
Y Q ++ + N L+ APTGSGKT + L H F KVV+
Sbjct: 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVF 301
Query: 740 IAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGI 796
+A + ++ N +K + G + ++G+ ++ + +DII+ TP+
Sbjct: 302 LATKVPVYEQQKNVFKHHF-ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILV-N 359
Query: 797 SRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856
S + + LMI DE H P ++ + + + + +GL+ ++
Sbjct: 360 SFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVG 418
Query: 857 NAGD 860
Sbjct: 419 VGNA 422
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 58.1 bits (139), Expect = 2e-08
Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%)
Query: 684 YNFSHFNPIQTQIF-HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---SDMKVVY 739
Y Q ++ + N L+ APTGSGKT + L H F KVV+
Sbjct: 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVF 301
Query: 740 IAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGI 796
+A + ++ N +K + G + ++G+ ++ + +DII+ TP+
Sbjct: 302 LATKVPVYEQQKNVFKHHF-ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILV-N 359
Query: 797 SRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856
S + + LMI DE H P ++ + + + + +GL+ ++
Sbjct: 360 SFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVG 418
Query: 857 NAGD 860
Sbjct: 419 VGNA 422
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 2e-08
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 691 PIQTQIF-HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749
Q I+ N L+ PTG GKT+ A + + + KV+ +AP K +V
Sbjct: 12 IYQEVIYAKCKET---NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLV-- 65
Query: 750 RMNDWKDRLVSQLG---KEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRN 804
+ +++V +TG+ +P+ A A +I++TP+ N
Sbjct: 66 --LQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQ----TIENDLLAG 119
Query: 805 YV--KKVGLMILDEIH 818
+ + V L++ DE H
Sbjct: 120 RISLEDVSLIVFDEAH 135
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 9e-05
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 977 GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP-AHLVIIKGTEYYDGKTK 1035
+ GL+ +++ L+ + FA + VLV TS G+++P LV+
Sbjct: 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV------------ 442
Query: 1036 RYVDFPITDI--LQMMGRAGRPQYDQHGKAVILVHE 1069
Y + + I +Q GR GR G+ +IL+ +
Sbjct: 443 FY-EPVPSAIRSIQRRGRTGR---HMPGRVIILMAK 474
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 24/147 (16%)
Query: 693 QTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752
Q + ++ PTGSGKT A A+ L + + P A+ +
Sbjct: 98 QEKALERWLVDKRGCIV-LPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQ--- 148
Query: 753 DWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLM 812
WK+RL + + E +G + +ST +D ++ + L+
Sbjct: 149 -WKERLGIFGEEYVGEFSGRIKEL------KPLTVST---YDSAYV--NAEKLGNRFMLL 196
Query: 813 ILDEIHLLGAE--RGPILEVIVSRMRY 837
I DE+H L AE I ++ ++ R
Sbjct: 197 IFDEVHHLPAESYVQ-IAQMSIAPFRL 222
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 5e-06
Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 11/175 (6%)
Query: 99 QKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158
++L ++ LE +N + IE+ GL V + + +
Sbjct: 301 KRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKL 360
Query: 159 LTERLFSE--GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD----- 211
+ F++ K+LV T + G+NL ++ G R+L +
Sbjct: 361 AQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQAL 420
Query: 212 -IFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQ--LPIESQFISSLKDNLNA 263
I GRAGR EG + T + + L+ + + PI + + + +
Sbjct: 421 QIAGRAGRFSSRFK-EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEM 474
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 5e-06
Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 12/168 (7%)
Query: 903 MNKPAYAAICTHSPTKPVLIFV----SSRRQTRLTALDLIQFAASDETPRQFLGMPEEDL 958
+ A P L+ + L + D + D
Sbjct: 265 LGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDC 324
Query: 959 QMVLSQVTDQNLRQTLQ---FGIGLHHAGLNDKDRSLVEELF--ANNKIQVLVCTSTLAW 1013
+ S+ ++ + ++ + + L + + F N+ ++LV T +
Sbjct: 325 IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384
Query: 1014 GVNLPAHLVIIKGTEYYDG---KTKRYVDFPITDILQMMGRAGRPQYD 1058
G+NL +I + + LQ+ GRAGR
Sbjct: 385 GLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1492 | |||
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.98 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.98 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.97 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.97 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.97 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.97 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.96 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.96 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.96 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.96 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.95 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.93 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.92 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.91 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.91 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.9 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.9 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.89 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.89 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.88 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.88 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.88 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.87 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.87 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.87 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.87 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.86 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.86 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.86 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.86 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.86 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.86 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.86 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.85 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.85 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.85 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.84 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.81 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.8 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.78 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.78 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.76 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.76 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.76 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.75 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.75 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.75 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.75 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.74 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.74 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.74 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.74 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.73 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.73 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.73 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.73 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.72 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.72 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.72 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.72 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.72 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.72 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.71 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.71 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.71 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.7 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.7 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.69 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.69 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.69 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.68 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.68 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.68 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.67 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.66 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.65 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.64 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.43 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.61 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.39 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.59 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.58 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.56 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.56 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.55 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.55 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.54 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.51 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.51 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.5 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.5 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.48 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.47 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.45 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.45 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.44 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.43 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.42 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.39 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.38 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.38 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.36 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.36 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.35 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.33 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.33 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.3 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.25 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.21 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.15 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.12 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.11 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.01 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 98.75 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 98.67 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 98.41 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.16 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.78 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.6 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.54 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 97.53 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.53 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.41 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.39 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 96.94 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 96.85 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 96.71 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 96.49 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.93 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.68 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.53 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.49 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 95.05 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 95.03 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.85 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.71 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.61 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 94.33 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 94.27 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 94.17 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 93.95 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 93.93 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.57 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 93.54 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 93.45 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 93.41 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 93.29 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 93.15 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.04 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.02 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 92.99 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.84 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 92.7 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 92.67 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 92.66 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.63 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 92.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 92.44 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 92.42 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.41 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 92.36 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 92.26 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 91.68 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 91.58 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.49 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 91.47 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 91.44 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 91.27 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 91.27 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 90.92 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 90.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 90.87 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 90.27 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 90.23 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 90.05 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 89.71 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.68 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 89.66 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 89.61 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 89.52 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 89.49 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 89.02 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 88.68 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 88.64 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 88.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 88.29 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 88.02 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 88.01 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 87.94 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 87.72 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 87.38 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 87.27 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 87.26 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 87.24 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 87.16 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 86.72 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 86.63 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 86.52 | |
| 1u9l_A | 70 | Transcription elongation protein NUSA; escherichia | 86.33 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 86.26 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 86.15 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 85.95 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 85.71 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 85.59 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 85.42 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 85.25 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 85.14 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 85.07 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 84.53 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 84.29 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 84.2 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 83.7 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 82.81 | |
| 2kz3_A | 83 | Putative uncharacterized protein RAD51L3; RAD51D, | 82.64 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 82.6 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 82.54 | |
| 2kz3_A | 83 | Putative uncharacterized protein RAD51L3; RAD51D, | 82.5 | |
| 1z3e_B | 73 | DNA-directed RNA polymerase alpha chain; bacterial | 82.4 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 82.36 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 82.31 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 82.2 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 82.17 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 81.11 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 80.5 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 80.39 | |
| 3k4g_A | 86 | DNA-directed RNA polymerase subunit alpha; bacteri | 80.26 |
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-234 Score=2374.19 Aligned_cols=1473 Identities=44% Similarity=0.821 Sum_probs=1399.1
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++++|+||||||+||++++|+||++.++.++++|++++|||||+++++++...........+++.+++.+.+. ..++
T Consensus 240 ~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ 318 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH-AGKN 318 (1724)
T ss_dssp HHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC-CSSC
T ss_pred hCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH-hcCC
Confidence 357789999999999999999999998877788999999999999999999888777777777777777766554 3568
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|+||||+||++|+.+|+.|.+...+.+....+........+.+..+.....+..|.+++.+|||+|||||++++|..||+
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999988877777677666666666677777777889999999999999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCc---ccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGW---RDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~---~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+|++|.++|||||+|||||||+|+++|||+|+++|||..+.+ +..+|+||+|||||+|+|..|.+|+++++++..+|
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 999999999999999999999999999999999999987754 45569999999999999999999999999999999
Q ss_pred HHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHH
Q 043190 240 LRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTD 319 (1492)
Q Consensus 240 ~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~ 319 (1492)
.++++++.|+||++...+.+++|+||++|++.+.+++++|+++||+|+|+.+||.+||++.++...|+.+..++.++|..
T Consensus 479 ~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~ 558 (1724)
T 4f92_B 479 LSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHT 558 (1724)
T ss_dssp HHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877889999999999999
Q ss_pred HHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHH
Q 043190 320 AARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELET 399 (1492)
Q Consensus 320 ~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~ 399 (1492)
+++.|.++|||+++++++.+.+|++||+||+|||++.|+..|.+.+++.+++.++|.++|.++||+++++|.+|+.+|++
T Consensus 559 ~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~ 638 (1724)
T 4f92_B 559 AALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQK 638 (1724)
T ss_dssp HHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHH
T ss_pred HHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 043190 400 LVQTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAV 479 (1492)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i 479 (1492)
++++ +|+++++.+..++.|+++|||+||++.++++++|.+|+.+|.++|.||++|++|||..+||+..+.++++|||||
T Consensus 639 l~~~-~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i 717 (1724)
T 4f92_B 639 LLER-VPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMI 717 (1724)
T ss_dssp HHHH-SSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhc-CCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEEEEEeecccce
Q 043190 480 DRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITRTV 559 (1492)
Q Consensus 480 ~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~ 559 (1492)
++|+|++.+||+||| ++|++.+++|+++|+|+++|.++++.+++++++++++|+.|++.+++||+++++++++|+++++
T Consensus 718 ~~~~w~~~~~L~q~~-~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~ 796 (1724)
T 4f92_B 718 DKRMWQSMCPLRQFR-KLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRST 796 (1724)
T ss_dssp HHTSCTTSCGGGGST-TSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSE
T ss_pred HhCCCCCCCceecCC-CCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCce
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCccc
Q 043190 560 LKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWL 639 (1492)
Q Consensus 560 ~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl 639 (1492)
++|+++++|+|.|+.++||..|.||+||+|.+++.|+|+++|.++++..++ .+.++|++|+.+|+||+|+++++||+|+
T Consensus 797 ~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~p~~~~i~~~sd~w~ 875 (1724)
T 4f92_B 797 LKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQD-EHLITFFVPVFEPLPPQYFIRVVSDRWL 875 (1724)
T ss_dssp EEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTS-CEEEEEEEECCSSCCSEEEEEEEESSST
T ss_pred EEEEEEEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCC-ceEEEEEEECCCCCCCeEEEEEEEcccc
Confidence 999999999999999999999999999999999999999999999998877 8999999999999999999999999999
Q ss_pred ccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCc
Q 043190 640 HAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717 (1492)
Q Consensus 640 ~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGK 717 (1492)
+++...+++|+++.+|.+.+++|+++|++|+|+++|+++.++++| +|++|||+|+++++.++++++|++++|||||||
T Consensus 876 ~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGK 955 (1724)
T 4f92_B 876 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 955 (1724)
T ss_dssp TCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCC
T ss_pred CCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCc
Confidence 999999999999999999999999999999999999999999999 799999999999999998999999999999999
Q ss_pred hHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhh
Q 043190 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGIS 797 (1492)
Q Consensus 718 T~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~ 797 (1492)
|++|++||++.+...+++++||++|+|+||.|++++|.+.|++.+|.+|+.++|+...+.+...+++|+|||||+|+.++
T Consensus 956 Tliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~ll 1035 (1724)
T 4f92_B 956 TICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS 1035 (1724)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHH
Confidence 99999999999988778899999999999999999999999887799999999998877666778999999999999999
Q ss_pred hcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCC
Q 043190 798 RNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 798 ~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~ 877 (1492)
+++.....++++++||+||+|++++++|+.++.++++++.+..+.+.+.|+|+||||++|++++++|+++.....++|.+
T Consensus 1036 r~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~ 1115 (1724)
T 4f92_B 1036 RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHP 1115 (1724)
T ss_dssp TTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCG
T ss_pred hCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCC
Confidence 99888778999999999999999989999999999999999888888999999999999999999999999989999999
Q ss_pred CccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 878 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
.+||++++.++.+++..........+.++.+..+....+++++||||+||+.|+.+|..|...+........+.....++
T Consensus 1116 ~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 1195 (1724)
T 4f92_B 1116 NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD 1195 (1724)
T ss_dssp GGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHH
T ss_pred CCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHH
Confidence 99999999999988887777777777888888888889999999999999999999999999988888888888888899
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCcc
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~ 1037 (1492)
+......+.+..|.+++..||++|||||++++|..+++.|++|.++|||||+++++|||+|+++|||.++++|+++.+++
T Consensus 1196 l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~ 1275 (1724)
T 4f92_B 1196 LIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAY 1275 (1724)
T ss_dssp HHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEE
T ss_pred HHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHh
Q 043190 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLS 1117 (1492)
Q Consensus 1038 ~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~ 1117 (1492)
.+++..+|+||+|||||+|+|..|.|++++.+.+...|++++.++.|+||+|...+.++++++|+.|.+.+.+|+++|++
T Consensus 1276 ~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~ 1355 (1724)
T 4f92_B 1276 VDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLT 1355 (1724)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHT
T ss_pred CCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCc-cccccchhhhhhccccHHHHHHHHhcc
Q 043190 1118 WTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT-VEPTMLGTIASQYYLSYVTVSMFGSNI 1196 (1492)
Q Consensus 1118 ~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~-~~~T~lG~~~s~~~i~~~T~~~f~~~l 1196 (1492)
+||||+|+.+||.||++++.+...++++++++|+++++.|++.|||+.++++ +.||++|++||+|||+|.|++.|..++
T Consensus 1356 ~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l 1435 (1724)
T 4f92_B 1356 WTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSL 1435 (1724)
T ss_dssp TSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred hhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999987765 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHH
Q 043190 1197 GPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSV 1276 (1492)
Q Consensus 1197 ~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~i 1276 (1492)
++..++.++|++||.|+||.++|+|++|+..+++|++.+|++.+...+++|+.|+++||||||+|+++| .+|.+|+..|
T Consensus 1436 ~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i 1514 (1724)
T 4f92_B 1436 NAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEI 1514 (1724)
T ss_dssp CTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHH
T ss_pred cccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888889999999999999999999999 8999999999
Q ss_pred HHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHh
Q 043190 1277 LDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQ 1356 (1492)
Q Consensus 1277 l~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~ 1356 (1492)
++++.||++||+|+|...||+.++.++|+|+|||.||+|++ .++|+|||||++.++++|.++||+|+.||++++++++.
T Consensus 1515 ~~~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~-~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~ 1593 (1724)
T 4f92_B 1515 LSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK-DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERN 1593 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTT-SCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcC-CcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhhC--CchHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCC
Q 043190 1357 TVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTN 1433 (1492)
Q Consensus 1357 ~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~ 1433 (1492)
.+++ +.++++|.+++++||++++++++.+.+. ..+..++++|++++.+. ....++||+||+.|.|+||++|||.+
T Consensus 1594 ~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~p~~k~e~w~~vvg~~~ 1671 (1724)
T 4f92_B 1594 ALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEE--VTGPVIAPLFPQKREEGWWVVIGDAK 1671 (1724)
T ss_dssp TSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSC--CCSCCCCTTSCSCCCCCEEEEEEETT
T ss_pred HHHCCChHHHHHHHHHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCC--CCCeeecCCCCCCCccCEEEEEEECC
Confidence 9875 5678999999999999999999987665 57888999999999863 44579999999999999999999999
Q ss_pred CCeEEEEEEeecCCcceEE--EEecCCCCCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1434 TSELYALKRISFSDRLNTH--MELPSGITTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1434 ~~~l~~~~r~~~~~~~~~~--~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
+|+|+++||+++++...++ |.+|. +|.+++++|+|||+|+|+|||++|.+
T Consensus 1672 ~~~l~~~kr~~~~~~~~~~l~f~~p~--~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1672 SNSLISIKRLTLQQKAKVKLDFVAPA--TGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp TTEEEEEEEECCSSEEEEEEEEECCS--SSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred CCeEEEEEEEecCCCceEEEEEEeCC--CCceeEEEEEEecCccccceeEEEec
Confidence 9999999999998876654 44674 59999999999999999999999986
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-105 Score=1097.82 Aligned_cols=801 Identities=33% Similarity=0.540 Sum_probs=713.7
Q ss_pred CccccccCchhHhhhc-CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC---------CCceEE
Q 043190 669 PLPVTALGNNIYEALY-NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---------SDMKVV 738 (1492)
Q Consensus 669 ~~~~~~l~~~~~~~~~-~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~---------~~~~~l 738 (1492)
..|++.|+.+ .+..| ||++||++|+++++.++++++|++++||||||||++|+++|++.+.+. .+.++|
T Consensus 60 l~~i~~Lp~~-~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~l 138 (1724)
T 4f92_B 60 LLPVEKLPKY-AQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKII 138 (1724)
T ss_dssp CCBTTTSCGG-GSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEE
T ss_pred ccchHhcCHH-HHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEE
Confidence 3456667644 44555 899999999999999998999999999999999999999999988642 367999
Q ss_pred EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccc
Q 043190 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 739 ~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
|++|+||||.|++++|.+.++.. |++|..++||...+.+....++|+|||||+|+.+++++.....++++++|||||+|
T Consensus 139 yiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH 217 (1724)
T 4f92_B 139 YIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH 217 (1724)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG
T ss_pred EECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecch
Confidence 99999999999999999988876 99999999999877777778999999999999999987666778999999999999
Q ss_pred ccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCcccc
Q 043190 819 LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 819 ~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 897 (1492)
+++++||+.+|.+++|+.+.....+.++|+|+||||++|++++++||+... ..++.+..++||+|++..+.+.......
T Consensus 218 ~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 218 LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAI 297 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHH
T ss_pred hcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchh
Confidence 999899999999999998776667789999999999999999999999853 4577889999999999887766555444
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC---ChHHHHHHHhhcCcHHHHHHh
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM---PEEDLQMVLSQVTDQNLRQTL 974 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~ 974 (1492)
.....++..++..+.....++++||||+||+.|+.+|..|.+.+........+... ..+.+........+..+.+++
T Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (1724)
T 4f92_B 298 KRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL 377 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh
Confidence 44444455566777777778899999999999999999999877655444333332 223444455556788999999
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
..||++|||||++++|..+++.|++|.++|||||+++++|||+|++++||+|++.|+++.+++.+++..+|+||+|||||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCC
Q 043190 1055 PQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL 1134 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~ 1134 (1492)
+|+|..|.+++++++++...|..++..+.|+||++...+.+++++||+.|++.+.+++++|+.+||+|.|+.+||.+|++
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~ 537 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI 537 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTC
T ss_pred CCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC---cccHHHHHHHHHHHHHHHhHHCCCceecCCc--cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHH
Q 043190 1135 EDTE---AEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHIL 1209 (1492)
Q Consensus 1135 ~~~~---~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~--~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~il 1209 (1492)
...+ .+.+++.+.++|++++..|.++|+|..++++ +.+|++|++||+|||++.|+..|.+.+++.++..++|+++
T Consensus 538 ~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~i 617 (1724)
T 4f92_B 538 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVF 617 (1724)
T ss_dssp CHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 7542 3456788889999999999999999987654 9999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHH
Q 043190 1210 SGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMID 1289 (1492)
Q Consensus 1210 s~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~ 1289 (1492)
|.++||..+++|++|...+++|.+.+|+++. ..+++++.|+++|||+||++++++..++.+|+.+|.+++.||++|++|
T Consensus 618 s~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~-~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~e 696 (1724)
T 4f92_B 618 SLSSEFKNITVREEEKLELQKLLERVPIPVK-ESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFE 696 (1724)
T ss_dssp HTCGGGTTCCCCGGGHHHHHHHHHHSSSCCC-SCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCChhhccCCcCHHHHHHHHHHHhcCCCCcC-CCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875 457789999999999999999998889999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC-CchHHHHH
Q 043190 1290 ICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG-NFPVSRLH 1368 (1492)
Q Consensus 1290 i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~-~~~~~~i~ 1368 (1492)
++..+||...+.++++|++||.+|+|++ .+||+|+|++|++.+++|.++|+ |+++|.++++.++..+++ +..+..|.
T Consensus 697 i~~~~~~~~~~~~~l~l~k~i~~~~w~~-~~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~~~~~~~~g~~i~ 774 (1724)
T 4f92_B 697 IVLNRGWAQLTDKTLNLCKMIDKRMWQS-MCPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGELIRMPKMGKTIH 774 (1724)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHHTSCTT-SCGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHHHHTCSTTHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhCCCCC-CCceecCCCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHHHHCCchHHHHHH
Confidence 9999999999999999999999999998 89999999999999999999999 899999999999998876 44689999
Q ss_pred HHhcCCCceEEEEEEEeccCCCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCc
Q 043190 1369 QDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDR 1448 (1492)
Q Consensus 1369 ~~~~~~P~i~i~~~~~~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~ 1448 (1492)
+.+++||.+++++.+++ .+.+.+.+.++++... .|.+++|. +.|.||++|+|.+++.|+.++++.+++.
T Consensus 775 ~~~~~~P~~~~~~~~~p---~~~~~~~~~~~~~~~~-------~w~~~~h~-~~~~~~~~v~d~~~~~i~~~~~~~~~~~ 843 (1724)
T 4f92_B 775 KYVHLFPKLELSVHLQP---ITRSTLKVELTITPDF-------QWDEKVHG-SSEAFWILVEDVDSEVILHHEYFLLKAK 843 (1724)
T ss_dssp HHHTTSCCEEEEEEEEE---SSSSEEEEEEEEEECS-------CCCTTTTT-TEEEEEEEEECTTSCBEEEEEEEEEEGG
T ss_pred HHHHHCCCceEEEEEEe---cCCceEEEEEEEeecc-------ccchhhcC-CceeEEEEEEecCCCeEEEEEEEEeeee
Confidence 99999999999999998 3456666777776543 45566664 6899999999999999999988876554
Q ss_pred -----ceEEEEecCCCCCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1449 -----LNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1449 -----~~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
..+.|.+|...|...+|.|.++||.|+|++.++++.+
T Consensus 844 ~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~ 885 (1724)
T 4f92_B 844 YAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 885 (1724)
T ss_dssp GTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEEC
T ss_pred ccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeecc
Confidence 3478889987777889999999999999999999976
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-78 Score=786.86 Aligned_cols=648 Identities=27% Similarity=0.375 Sum_probs=525.8
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||.+|+|+|.++++.+. +++|++++||||||||+++++++++.+.. +++++|++|+++||.|++++|+ .+... |
T Consensus 21 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~-~~~~~-g 95 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFK-KWEKI-G 95 (702)
T ss_dssp C---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-TTTTT-T
T ss_pred CCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHH-HHHhc-C
Confidence 489999999999999976 78999999999999999999999988764 6899999999999999999994 46555 8
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+++.++|+.........+++|+|+|||+|+.++++ ...+++++++||+||+|++++ .|+..++.++.+++..
T Consensus 96 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---- 169 (702)
T 2p6r_A 96 LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---- 169 (702)
T ss_dssp CCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH----
T ss_pred CEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc----
Confidence 999999999877666666899999999999998887 344588999999999999875 6999999999998754
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc----cccChhHHHHH-hhcCCC
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM----NSMNKPAYAAI-CTHSPT 917 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~ 917 (1492)
.++.|+|+||||++|.+++++|++.+. +....||+++...+.......+.... .... ....+ ....++
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 242 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK--FEELVEECVAEN 242 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEECC--HHHHHHHHHHTT
T ss_pred CcCceEEEECCCcCCHHHHHHHhCCCc-----ccCCCCCccceEEEeeCCeeeccCcchhhhhhhh--HHHHHHHHHhcC
Confidence 457999999999999999999998543 45677888887665422111111100 0111 11111 112467
Q ss_pred CCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHH
Q 043190 918 KPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELF 997 (1492)
Q Consensus 918 ~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 997 (1492)
+++||||+++++++.++..|.+.....-.... ..+.+........+..+.++++.++++|||+|++++|..+++.|
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEG----LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS----HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHH----HHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 89999999999999999999876532110000 00011000111224567788889999999999999999999999
Q ss_pred hcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH-HH
Q 043190 998 ANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-YK 1076 (1492)
Q Consensus 998 ~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~-~~ 1076 (1492)
++|+++|||||+++++|||+|++++||++++.||+. ..++|..+|.||+|||||+|+|..|.|++++++.+... ++
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 395 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 395 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHH
T ss_pred HCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHH
Confidence 999999999999999999999999999999999932 47889999999999999999999999999999887544 44
Q ss_pred Hhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHH
Q 043190 1077 KFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNT 1153 (1492)
Q Consensus 1077 ~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~ 1153 (1492)
+++ ..+.|++|.+.. .|.++++++++.|.+.+.+|+.+|+++||+|+++. . ++.+.++++
T Consensus 396 ~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~----------------~~~~~~~~a 458 (702)
T 2p6r_A 396 RYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I----------------SLSYELERV 458 (702)
T ss_dssp TTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C----------------CCHHHHHHH
T ss_pred HHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H----------------HHHHHHHHH
Confidence 565 578899999987 68999999999999999999999999999998643 1 124678899
Q ss_pred HHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCC-CCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhh
Q 043190 1154 FEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPD-TSLEVFLHILSGASEYDELPVRHNEDNHNEALS 1232 (1492)
Q Consensus 1154 l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~-~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~ 1232 (1492)
++.|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|..++... .+..+++.++|.++||..+++|++|+...+.+.
T Consensus 459 l~~L~~~g~i~~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~ 537 (702)
T 2p6r_A 459 VRQLENWGMVVEA-AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAF 537 (702)
T ss_dssp HHHHHHTTSEEES-SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHH
T ss_pred HHHHHHCcCeeEC-CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHHHHHHHH
Confidence 9999999999876 55899999999999999999999999988875 677799999999999999999999944444443
Q ss_pred c-ccceeecCCCCCC-------hhHHHHHHHHHHhcCCCCCC-c-c---hHhhHHHHHHhHHHHHHHHHHHHHhcCCHHH
Q 043190 1233 Q-RVRFAVDNNRLDD-------PHVKANLLFQAHFSRLDLPI-S-D---YVTDLKSVLDQSIRIIQAMIDICANSGWLSS 1299 (1492)
Q Consensus 1233 ~-~~~~~~~~~~~~~-------~~~K~~lLlqa~l~r~~l~~-~-~---l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~ 1299 (1492)
+ ..++ .+.+.++. ++.|+++|||+|++|.+++. . . +.+|+.+++++|.||++||++||...||.
T Consensus 538 ~~~~~~-~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~-- 614 (702)
T 2p6r_A 538 RLRKEL-SYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT-- 614 (702)
T ss_dssp HHGGGS-SCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred hccccc-cCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH--
Confidence 3 1222 11111333 88999999999999998752 1 1 58999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCceEE
Q 043190 1300 SITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRIQV 1379 (1492)
Q Consensus 1300 ~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~i~i 1379 (1492)
.+++|+|||.||+|++ .+||+|+|||++.++++|+++|++|+.||++++ +++..+++++.++.+.+.+. +|.+++
T Consensus 615 --~l~~l~~ri~~gv~~~-~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~-~p~~~~ 689 (702)
T 2p6r_A 615 --SVSGLTERIKHGVKEE-LLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS-VKSLNP 689 (702)
T ss_dssp --SSTTHHHHHHHTCCGG-GHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH-HHC---
T ss_pred --HHHHHHHHHHcCCCcc-hHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC-CCccCc
Confidence 7778999999999998 899999999999999999999999999999999 99999888778999999999 999998
Q ss_pred EEE
Q 043190 1380 KLR 1382 (1492)
Q Consensus 1380 ~~~ 1382 (1492)
++.
T Consensus 690 ~~~ 692 (702)
T 2p6r_A 690 ESA 692 (702)
T ss_dssp ---
T ss_pred chh
Confidence 643
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-77 Score=775.21 Aligned_cols=651 Identities=26% Similarity=0.347 Sum_probs=528.6
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||..|+|+|.++++.++.+++|++++||||||||+++++++++.+.. .+++++|++|+++||.|++++|+ .+... |
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~-~l~~~-g 95 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQ-DWEKI-G 95 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTG-GGGGG-T
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHH-HHHhc-C
Confidence 499999999999999844478999999999999999999999987763 26899999999999999999995 46655 8
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+++.++|+...+.+...+++|+|+|||+|+.++++ ...+++++++|||||+|++++ +||..++.++.+++
T Consensus 96 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------ 167 (720)
T 2zj8_A 96 LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------ 167 (720)
T ss_dssp CCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------
T ss_pred CEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------
Confidence 999999999887766667899999999999988887 344588999999999999976 79999999998885
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH-hhcCCCCCee
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI-CTHSPTKPVL 921 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L 921 (1492)
.+.|+|+||||++|++++++|++... +....||+++...+.......+..............+ ....+++++|
T Consensus 168 -~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 241 (720)
T 2zj8_A 168 -GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGAL 241 (720)
T ss_dssp -TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEE
T ss_pred -cCCeEEEEcCCcCCHHHHHHHhCCcc-----cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEE
Confidence 27899999999999999999997542 4567788887765432111111110000011111111 1124568999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCCC-ChHHHHHHHhhc----CcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLGM-PEEDLQMVLSQV----TDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
|||++++.|+.++..|.+..... ... ....+......+ .+..+.+.+..++++|||+|++++|..+++.
T Consensus 242 VF~~sr~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 242 IFVNMRRKAERVALELSKKVKSL------LTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp EECSCHHHHHHHHHHHHHHHGGG------SCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHHHHh------cChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 99999999999999998764320 000 001111122221 2345778888999999999999999999999
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH-H
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-Y 1075 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~-~ 1075 (1492)
|++|.++|||||+++++|||+|++++||+++++|++. ++.++|..+|.||+|||||+|+|..|.|++++++.+... +
T Consensus 316 f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~--g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~ 393 (720)
T 2zj8_A 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF--GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVM 393 (720)
T ss_dssp HHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS--SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHH
T ss_pred HHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC--CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHH
Confidence 9999999999999999999999999999999999932 246889999999999999999999999999999887543 5
Q ss_pred HHhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHH
Q 043190 1076 KKFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQN 1152 (1492)
Q Consensus 1076 ~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~ 1152 (1492)
++++ .++.|+++.+.. .|.++++++++.|.+.+.+|+.+|+.+||+|+++.. ..++.+.+++
T Consensus 394 ~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~---------------~~~~~~~~~~ 458 (720)
T 2zj8_A 394 NHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD---------------TYSLEEKIRN 458 (720)
T ss_dssp HHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccc---------------hHHHHHHHHH
Confidence 5566 567889999876 589999999999999999999999999999987531 1456788999
Q ss_pred HHHHhHHCCCce-ecCCccccccchhhhhhccccHHHHHHHHhccCCC---CCHHHHHHHHhCCCCCCCCcCCCChhHHH
Q 043190 1153 TFEDLEDSGCVK-MTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPD---TSLEVFLHILSGASEYDELPVRHNEDNHN 1228 (1492)
Q Consensus 1153 ~l~~L~~~~~i~-~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~---~~~~~ll~ils~a~Ef~~i~~R~~e~~~l 1228 (1492)
+++.|.+.|+|. .+++.+.+|++|+++|+||++|.|+++|..++... .+..++|.++|.++||..+++|++|...+
T Consensus 459 ~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l 538 (720)
T 2zj8_A 459 ILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERL 538 (720)
T ss_dssp HHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHH
T ss_pred HHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHH
Confidence 999999999998 55556999999999999999999999999887763 67889999999999999999999998888
Q ss_pred HHhhcc------cceeecCCC----CC--ChhHHHHHHHHHHhcCCCCCC-c-c---hHhhHHHHHHhHHHHHHHHHHHH
Q 043190 1229 EALSQR------VRFAVDNNR----LD--DPHVKANLLFQAHFSRLDLPI-S-D---YVTDLKSVLDQSIRIIQAMIDIC 1291 (1492)
Q Consensus 1229 ~~l~~~------~~~~~~~~~----~~--~~~~K~~lLlqa~l~r~~l~~-~-~---l~~D~~~il~~~~rl~~a~~~i~ 1291 (1492)
.++... .+.+++... +. .++.|+++|||+|++|.+++. . . +.+|+.+++++|.||++||+++|
T Consensus 539 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~ 618 (720)
T 2zj8_A 539 EEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIA 618 (720)
T ss_dssp HHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHH
Confidence 776421 222222110 11 178999999999999998762 1 1 58999999999999999999999
Q ss_pred HhcCCHHHHHHHHH-HHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHH
Q 043190 1292 ANSGWLSSSITCMH-LLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLH 1368 (1492)
Q Consensus 1292 ~~~~~~~~~~~~l~-l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~ 1368 (1492)
...||... .++|. |+|||.||+|++ .+||+|||||++.++++|+++|++|+.||++++++++..+ +++...+++.
T Consensus 619 ~~~g~~~~-~~~l~~l~~rl~~gv~~e-~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~ 696 (720)
T 2zj8_A 619 KVLGAYEI-VDYLETLRVRVKYGIREE-LIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIF 696 (720)
T ss_dssp HHHTCGGG-HHHHHHHHHHHHHTCCGG-GGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHH
T ss_pred HHcCcHHH-HHHHHHHHHHHHcCCCcc-chhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHH
Confidence 99999764 45665 999999999998 8999999999999999999999999999999999999887 5667788899
Q ss_pred HHhcCCCc
Q 043190 1369 QDLQRFPR 1376 (1492)
Q Consensus 1369 ~~~~~~P~ 1376 (1492)
.++.++|.
T Consensus 697 ~~~~~~~~ 704 (720)
T 2zj8_A 697 KFLGKNVK 704 (720)
T ss_dssp HHHC----
T ss_pred Hhcccccc
Confidence 99999997
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-75 Score=762.45 Aligned_cols=649 Identities=25% Similarity=0.362 Sum_probs=522.2
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||.+|+|+|.++++.++.++++++++||||||||+++++++++.+.. .+++++|++|+|+||.|++++|+ .+... |
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~-~~~~~-g 102 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFK-DWELI-G 102 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHG-GGGGG-T
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHH-HhhcC-C
Confidence 489999999999999955589999999999999999999999988764 26899999999999999999994 46555 8
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+++..+|+.........+++|+|+|||+|+.++++ ...+++++++|||||+|++++ .+|..++.++.+++
T Consensus 103 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------ 174 (715)
T 2va8_A 103 FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------ 174 (715)
T ss_dssp CCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH------
T ss_pred CEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc------
Confidence 999999999877665566899999999999998887 344588999999999999875 78999999998876
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCc------cccc---cccccChhHHHHHh-
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK------FYCP---RMNSMNKPAYAAIC- 912 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~------~~~~---~~~~~~~~~~~~l~- 912 (1492)
+.|+|+||||++|.+++++|++... +....||+++...+...... .+.. ............+.
T Consensus 175 --~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (715)
T 2va8_A 175 --RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLD 247 (715)
T ss_dssp --TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHH
T ss_pred --cCcEEEEcCCCCCHHHHHHHhCCCc-----cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHH
Confidence 6899999999999999999998543 35677888877654321100 0110 00000122222222
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC-ChHHHHHHHhhc------CcHHHHHHhccceEeecCCC
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM-PEEDLQMVLSQV------TDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~l~~~~~~~v~~~h~~l 985 (1492)
...+++++||||+++++++.++..|.+..... ++.. ...++......+ .+..+.++++.++++|||+|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l 322 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGL 322 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCC
Confidence 23567899999999999999999997643220 1110 011222222222 23567788889999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCc-cccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKR-YVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~-~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
+.++|..+++.|++|.++|||||+++++|||+|++++||++++.|+++.+. +.++|.++|.||+|||||+|+|..|.|+
T Consensus 323 ~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 402 (715)
T 2va8_A 323 SKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESI 402 (715)
T ss_dssp CHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred CHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999954321 4678899999999999999999999999
Q ss_pred EEecCCcH--HHHHHhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCc
Q 043190 1065 ILVHEPKK--SFYKKFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEA 1139 (1492)
Q Consensus 1065 ~l~~~~~~--~~~~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~ 1139 (1492)
+++++.+. ..+++++ .++.++++.+.. .|.++++++++.|.+.+.+|+.+|+++||+|++..
T Consensus 403 ~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~------------- 469 (715)
T 2va8_A 403 VVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLV------------- 469 (715)
T ss_dssp EECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHH-------------
T ss_pred EEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcc-------------
Confidence 99987763 4566676 578899999977 68899999999999999999999999999987532
Q ss_pred ccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCC--CCCHHHHHHHHhCCCCCCC
Q 043190 1140 EGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGP--DTSLEVFLHILSGASEYDE 1217 (1492)
Q Consensus 1140 ~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~--~~~~~~ll~ils~a~Ef~~ 1217 (1492)
...++++++.|.+.|+|..+++.+.+|++|+++|+||++|.++++|..++.. ..+..+++.++|.++||..
T Consensus 470 -------~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~ 542 (715)
T 2va8_A 470 -------DVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542 (715)
T ss_dssp -------HHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCC
T ss_pred -------hHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCccccc
Confidence 1237899999999999998776799999999999999999999999988776 4788899999999999999
Q ss_pred CcCCCChhHHHHHhhc-ccceeecCCCCC-------ChhHHHHHHHHHHhcCCCCCC--cch---HhhHHHHHHhHHHHH
Q 043190 1218 LPVRHNEDNHNEALSQ-RVRFAVDNNRLD-------DPHVKANLLFQAHFSRLDLPI--SDY---VTDLKSVLDQSIRII 1284 (1492)
Q Consensus 1218 i~~R~~e~~~l~~l~~-~~~~~~~~~~~~-------~~~~K~~lLlqa~l~r~~l~~--~~l---~~D~~~il~~~~rl~ 1284 (1492)
+++|++|...+.++.. ..+.......+. .++.|+++|||+|++|.++.. ..| .+|+.+++++|.|++
T Consensus 543 ~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~ 622 (715)
T 2va8_A 543 VSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLT 622 (715)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 9999999998888743 222111111122 178999999999999998752 123 899999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchH
Q 043190 1285 QAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPV 1364 (1492)
Q Consensus 1285 ~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~ 1364 (1492)
+|+.+||...||...+..+.+|++||.+|+|++ ..||+|+||+++.++++|+++|++|++||+ ++++++..+++++.+
T Consensus 623 ~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e-~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~~~~~ 700 (715)
T 2va8_A 623 YSAYHLSRELKLNEHADKLRILNLRVRDGIKEE-LLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLGQKLG 700 (715)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGG-GHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChh-hcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhChhHH
Confidence 999999999999998888899999999999998 999999999999999999999999999999 999999999887777
Q ss_pred HHHHH-HhcCCCce
Q 043190 1365 SRLHQ-DLQRFPRI 1377 (1492)
Q Consensus 1365 ~~i~~-~~~~~P~i 1377 (1492)
+.+.+ ....+|.+
T Consensus 701 ~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 701 EKVVQEAARLLNRF 714 (715)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhccC
Confidence 88877 44556643
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-60 Score=615.49 Aligned_cols=500 Identities=21% Similarity=0.283 Sum_probs=406.1
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHH----HHhhHHHHHHHHHHHhc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARN----ELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (1492)
++++|+|+||||++|++++++|+++. .+..++||+|+..++............ ..+. ....+.+.+.+
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 241 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK--FEELVEECVAE 241 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECC--HHHHHHHHHHT
T ss_pred CcCceEEEECCCcCCHHHHHHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchhhhhhhh--HHHHHHHHHhc
Confidence 45799999999999999999999865 478899999998765421100000000 0000 23344455578
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+||++|+.+|+.|.+..... ..... ..+.+........++.|.+++..||++|||||++++|..+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKY------VENEG-LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTT------CCCSS-HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhh------cChHH-HHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 8999999999999999999998765421 11111 0011111111223467889999999999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|.++|||||+++++|||+|+++|||++++.||+...+++..+|.||+|||||+|+|..|.|++++++.+.+.+.
T Consensus 315 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~ 394 (702)
T 2p6r_A 315 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 394 (702)
T ss_dssp HHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHH
T ss_pred HHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHH
Confidence 99999999999999999999999999999999999998322235667799999999999999999999999988866544
Q ss_pred H-Hh-cCCCccccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHH
Q 043190 241 R-LL-TSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRAL 316 (1492)
Q Consensus 241 ~-~~-~~~~~ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~ 316 (1492)
+ ++ +.++|++|.+.. .|.++++++++.|++.+.+++.+|+.+||+|+++. .| ..+.
T Consensus 395 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~~-------------------~~~~ 454 (702)
T 2p6r_A 395 KRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-IS-------------------LSYE 454 (702)
T ss_dssp HTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-CC-------------------CHHH
T ss_pred HHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-HH-------------------HHHH
Confidence 3 44 578899999986 79999999999999999999999999999999865 11 1478
Q ss_pred HHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcC-CCHHHHHHHhcCCccCCCCccchhHHH
Q 043190 317 VTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRH-MNDSEVIEMVSHSSEFENIVVRDEEQN 395 (1492)
Q Consensus 317 ~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~-~~~~~ll~ils~s~Ef~~i~~R~~e~~ 395 (1492)
++++++.|.+.|+|+.+ +.+.+|++|++||+||++|.|++.|...++.. .+..++|.++|.++||.++++|+.| .
T Consensus 455 ~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~ 530 (702)
T 2p6r_A 455 LERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-S 530 (702)
T ss_dssp HHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-H
T ss_pred HHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-H
Confidence 89999999999999865 56899999999999999999999999998875 6788999999999999999999999 6
Q ss_pred HHHHHHhc-CCcc---c-ccCC---CCChhHHHHHHHHHHHcCCCCCC----chh-HhhHHHHHHhHHHHHHHHHHHHHh
Q 043190 396 ELETLVQT-LCPV---E-VKGG---PSNKHGKISILIQLYISRGWIDT----FSL-VSDAAYISASLARIMRALFETCLR 462 (1492)
Q Consensus 396 ~l~~l~~~-~~~~---~-~~~~---~~~~~~K~~~Llqa~i~~~~~~~----~~l-~~d~~~i~~~~~rl~~al~ei~~~ 462 (1492)
++.++..+ ..++ | +++. ...++.|+++|||+|++|.+++. |++ .+|+++++++|.|+++|+++||..
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~ 610 (702)
T 2p6r_A 531 WVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEE 610 (702)
T ss_dssp HHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666533 1222 2 1110 01278999999999999998763 666 699999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhc
Q 043190 463 RGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLG 541 (1492)
Q Consensus 463 ~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~ 541 (1492)
.||. .+++|++||.||+|++.+||+|+| ++++.++++|+++|+ |+.+|.+++ +++..+++ +++|++|.+.++
T Consensus 611 ~g~~----~l~~l~~ri~~gv~~~~~~L~qlp-~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~-~~~~~~i~~~~~ 683 (702)
T 2p6r_A 611 VGNT----SVSGLTERIKHGVKEELLELVRIR-HIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG-RGIAERVVEGIS 683 (702)
T ss_dssp TTCC----SSTTHHHHHHHTCCGGGHHHHTST-TCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC-HHHHHHHHHHHH
T ss_pred cCHH----HHHHHHHHHHcCCCcchHhhhcCC-CCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC-hhHHHHHHHhcC
Confidence 9997 778899999999999999999999 999999999999999 999999999 99999998 999999999999
Q ss_pred cCCceeEEEE
Q 043190 542 YFPSIQLSAT 551 (1492)
Q Consensus 542 ~~P~~~i~~~ 551 (1492)
+|.+++++.
T Consensus 684 -~p~~~~~~~ 692 (702)
T 2p6r_A 684 -VKSLNPESA 692 (702)
T ss_dssp -HHC------
T ss_pred -CCccCcchh
Confidence 999998643
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-59 Score=607.23 Aligned_cols=505 Identities=20% Similarity=0.262 Sum_probs=404.9
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMV 86 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 86 (1492)
++|+|+||||+||++++++|++.. .+..++||+|+...+..-...................+.+.+.+++++||
T Consensus 169 ~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LV 242 (720)
T 2zj8_A 169 KAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALI 242 (720)
T ss_dssp TBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEE
T ss_pred CCeEEEEcCCcCCHHHHHHHhCCc------ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEE
Confidence 789999999999999999999765 47789999999876542110000000000001112344445577899999
Q ss_pred EEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhh----cCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 87 FVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMK----SRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 87 F~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
||+||++|+.+|+.|.+.....- .......+...... ..+..|.+++..||++|||||++++|..+++
T Consensus 243 F~~sr~~~~~~a~~L~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 243 FVNMRRKAERVALELSKKVKSLL--------TKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp ECSCHHHHHHHHHHHHHHHGGGS--------CHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHHHhc--------ChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 99999999999999987643210 00111111111111 1244588999999999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCC-CCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH-HH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKA-GGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY-YL 240 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~-~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~-~~ 240 (1492)
.|++|.++|||||+++++|||+|+++|||++++.||+.. .+++..+|+||+|||||+|+|..|.|++++++.+... +.
T Consensus 315 ~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 394 (720)
T 2zj8_A 315 NFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMN 394 (720)
T ss_dssp HHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHH
T ss_pred HHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHH
Confidence 999999999999999999999999999999999998321 1356667999999999999999999999999887654 33
Q ss_pred HHh-cCCCccccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 241 RLL-TSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 241 ~~~-~~~~~ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
+++ +.+.|++|++.. .+.++++++++.|.+.+.+++.+|+.+||+|.++..+ .++.+.+
T Consensus 395 ~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~------------------~~~~~~~ 456 (720)
T 2zj8_A 395 HYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDT------------------YSLEEKI 456 (720)
T ss_dssp HHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCC------------------HHHHHHH
T ss_pred HHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccch------------------HHHHHHH
Confidence 455 567899999876 7999999999999999999999999999999986422 1335789
Q ss_pred HHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcC---CCHHHHHHHhcCCccCCCCccchhHH
Q 043190 318 TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRH---MNDSEVIEMVSHSSEFENIVVRDEEQ 394 (1492)
Q Consensus 318 ~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~---~~~~~ll~ils~s~Ef~~i~~R~~e~ 394 (1492)
+++++.|.+.|+|+.+. ++.+.+|++|++||+||++|.|++.|...++.. .+..++|.++|+++||+++++|++|+
T Consensus 457 ~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 457 RNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREF 535 (720)
T ss_dssp HHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHH
T ss_pred HHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHH
Confidence 99999999999998322 467999999999999999999999999998874 78899999999999999999999999
Q ss_pred HHHHHHHhc-----CCcccccCCCCC-------hhHHHHHHHHHHHcCCCCC----Cchh-HhhHHHHHHhHHHHHHHHH
Q 043190 395 NELETLVQT-----LCPVEVKGGPSN-------KHGKISILIQLYISRGWID----TFSL-VSDAAYISASLARIMRALF 457 (1492)
Q Consensus 395 ~~l~~l~~~-----~~~~~~~~~~~~-------~~~K~~~Llqa~i~~~~~~----~~~l-~~d~~~i~~~~~rl~~al~ 457 (1492)
.++.++..+ ..+.|++..... ++.|+++|||+|++|.+++ .|++ .+|+++++++|.|+++|++
T Consensus 536 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~ 615 (720)
T 2zj8_A 536 ERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLK 615 (720)
T ss_dssp HHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHH
Confidence 999988532 234445442222 7899999999999999876 3555 6999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHH
Q 043190 458 ETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRL 535 (1492)
Q Consensus 458 ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~ 535 (1492)
+||...||...+..+.+|++||.||+|++.+||+||| +|++.++++|+++|+ |+.+|.+++++++..+-+ .++..+.
T Consensus 616 ~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp-~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~ 694 (720)
T 2zj8_A 616 EIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLP-LVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEA 694 (720)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTST-TCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHH
Confidence 9999999986666666699999999999999999999 999999999999999 999999999999998822 4566677
Q ss_pred HHHHhccCCc
Q 043190 536 VKQYLGYFPS 545 (1492)
Q Consensus 536 i~~~~~~~P~ 545 (1492)
+..++.++|.
T Consensus 695 ~~~~~~~~~~ 704 (720)
T 2zj8_A 695 IFKFLGKNVK 704 (720)
T ss_dssp HHHHHC----
T ss_pred HHHhcccccc
Confidence 7777777776
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=603.01 Aligned_cols=499 Identities=22% Similarity=0.276 Sum_probs=403.6
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc------hhH-HHHHh--hHHHHHHHHHH
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN------FAA-RNELL--SEICYKKVVDS 77 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~------~~~-~~~~~--~~~~~~~~~~~ 77 (1492)
++|+|+||||++|++++++|+++. .+..++||+|+..++....... +.. ....+ ....+..+.+.
T Consensus 175 ~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
T 2va8_A 175 RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDS 248 (715)
T ss_dssp TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHH
T ss_pred cCcEEEEcCCCCCHHHHHHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHH
Confidence 689999999999999999999865 4778999999987664322100 000 00000 12234455566
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhh------cCchHHHHHhcccEEEEcCC
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMK------SRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~gv~~hhag 151 (1492)
+.+++++||||+||++|+.+|+.|.+..... .+ ...+...+...... ..++.|.+++..||++||||
T Consensus 249 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~----~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~ 321 (715)
T 2va8_A 249 LSKNGQVLVFRNSRKMAESTALKIANYMNFV----SL---DENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG 321 (715)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTTSS----CC---CHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT
T ss_pred HhcCCCEEEEECCHHHHHHHHHHHHHHHhhc----cC---ChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC
Confidence 6788999999999999999999998643210 00 11111122222211 12467889999999999999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCC----CCcccCchhhhhhccCCCCCCccceE
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKA----GGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~----~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
|++++|..+++.|++|.++|||||+++++|||+|+++|||++++.||+.. .+++..+|.||+|||||+|+|..|.|
T Consensus 322 l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 401 (715)
T 2va8_A 322 LSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGES 401 (715)
T ss_dssp SCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999433 23566779999999999999999999
Q ss_pred EEEeCCcc-HH-HHHHHh-cCCCccccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCccc
Q 043190 228 IIITSHDK-LA-YYLRLL-TSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDE 302 (1492)
Q Consensus 228 i~~~~~~~-~~-~~~~~~-~~~~~ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~ 302 (1492)
++++++.+ .. .+.+++ ..+++++|++.. .|.++++++++.|.+.+.+++.+|+.+||+|++...
T Consensus 402 ~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~----------- 470 (715)
T 2va8_A 402 IVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVD----------- 470 (715)
T ss_dssp EEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHH-----------
T ss_pred EEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcch-----------
Confidence 99998776 33 344444 567899999976 799999999999999999999999999999987431
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhc--CCCHHHHHHHhcC
Q 043190 303 VIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRR--HMNDSEVIEMVSH 380 (1492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~--~~~~~~ll~ils~ 380 (1492)
..++++++.|.+.|+|+.+ ++.+.+|++|++||+||++|.+++.|...++. ..+..++|.++|.
T Consensus 471 ------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 536 (715)
T 2va8_A 471 ------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAF 536 (715)
T ss_dssp ------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhc
Confidence 2377999999999999865 46789999999999999999999999999887 4789999999999
Q ss_pred CccCCCCccchhHHHHHHHHHhcC-----CcccccCC---CCChhHHHHHHHHHHHcCCCCCC----chh-HhhHHHHHH
Q 043190 381 SSEFENIVVRDEEQNELETLVQTL-----CPVEVKGG---PSNKHGKISILIQLYISRGWIDT----FSL-VSDAAYISA 447 (1492)
Q Consensus 381 s~Ef~~i~~R~~e~~~l~~l~~~~-----~~~~~~~~---~~~~~~K~~~Llqa~i~~~~~~~----~~l-~~d~~~i~~ 447 (1492)
++||.++++|++|+.++.++..+. .+.+++.. ...++.|+++|||+|++|.++.. |++ .+|++++.+
T Consensus 537 ~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~ 616 (715)
T 2va8_A 537 TPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVE 616 (715)
T ss_dssp STTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHH
Confidence 999999999999999999986531 11222210 11278899999999999999874 777 699999999
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHH
Q 043190 448 SLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGAL 526 (1492)
Q Consensus 448 ~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l 526 (1492)
+|.|+++|+.+||...||...+..+.+|++||.+|+|++..||+||| +||+.++++|+++|+ |+++|+ ++++++.++
T Consensus 617 ~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp-~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~ 694 (715)
T 2va8_A 617 TMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQIS-GVGRKRARLLYNNGIKELGDVV-MNPDKVKNL 694 (715)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTST-TCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCC-CCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999 999999 999999999
Q ss_pred hcCCchHHHHHH-HhccCCce
Q 043190 527 IRYTPGGRLVKQ-YLGYFPSI 546 (1492)
Q Consensus 527 ~~~~~~~~~i~~-~~~~~P~~ 546 (1492)
++ +++|++|.+ ..+++|.+
T Consensus 695 l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 695 LG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HC-HHHHHHHHHHHHHHHC--
T ss_pred hC-hhHHHHHHHHHHHhhccC
Confidence 98 899999999 55677765
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-56 Score=517.20 Aligned_cols=315 Identities=27% Similarity=0.503 Sum_probs=290.2
Q ss_pred CccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceee-cCCCCCC
Q 043190 1168 DTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAV-DNNRLDD 1246 (1492)
Q Consensus 1168 ~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~-~~~~~~~ 1246 (1492)
+.+.||++|++||+|||++.|++.|...+++.++..++|+++|.|.||.++++|++|+..+++|++.+|+++ ++..+++
T Consensus 7 ~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~ 86 (328)
T 3im1_A 7 EIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGS 86 (328)
T ss_dssp CCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSSS
T ss_pred CCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCCC
Confidence 449999999999999999999999999999999999999999999999999999999999999999999885 3456788
Q ss_pred hhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccC
Q 043190 1247 PHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFP 1326 (1492)
Q Consensus 1247 ~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp 1326 (1492)
|+.|+++||||||+|+++|. +|.+|+.+|+++|.||++||+||+..+||++ +.++|+|+|||+||+|++ .+||+|||
T Consensus 87 ~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~-~~pL~Qlp 163 (328)
T 3im1_A 87 VSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDV-DNPLRQIP 163 (328)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTT-SCGGGGST
T ss_pred HHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCC-CCceeCCC
Confidence 99999999999999999995 9999999999999999999999999999999 999999999999999998 89999999
Q ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEec
Q 043190 1327 CMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKM 1403 (1492)
Q Consensus 1327 ~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~ 1403 (1492)
||+++.+++|.++|++|++||++++++++..+++ +.+++++.+++++||.++|++++++++. .+++.++++|++++.
T Consensus 164 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 243 (328)
T 3im1_A 164 HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243 (328)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEES
T ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEEC
Confidence 9999999999999999999999999999998765 4568999999999999999999977554 478999999999998
Q ss_pred cCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCC-cceE--EEEecCCCCCcceEEEEEEeCCCCCccEE
Q 043190 1404 NSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSD-RLNT--HMELPSGITTFQGMKLVVVSDCYLGFEQE 1480 (1492)
Q Consensus 1404 ~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~-~~~~--~~~~p~~~~~~~~~~v~~~sd~y~G~D~~ 1480 (1492)
+.+ ....+|||+||+.|.|+||++|||.++|+++++||+++.+ ..++ +|.+|. +|.++|++++|||+|+|+|++
T Consensus 244 ~~~-~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~--~g~~~~~v~~vsD~ylG~d~~ 320 (328)
T 3im1_A 244 VEP-ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT--SGKHNLTIWCVCDSYLDADKE 320 (328)
T ss_dssp SCC-SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCC--SEEEEEEEEEEESSCSSCCEE
T ss_pred CCC-CCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCC--CCcEEEEEEEEecCCcceeEE
Confidence 743 4467999999999999999999999999999999999875 3344 444665 589999999999999999999
Q ss_pred EEEEEEEe
Q 043190 1481 HSIEALVE 1488 (1492)
Q Consensus 1481 ~~i~~~v~ 1488 (1492)
++|+++|.
T Consensus 321 ~~~~l~V~ 328 (328)
T 3im1_A 321 LSFEINVK 328 (328)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999984
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=512.99 Aligned_cols=315 Identities=30% Similarity=0.622 Sum_probs=264.4
Q ss_pred cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhH
Q 043190 1170 VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHV 1249 (1492)
Q Consensus 1170 ~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 1249 (1492)
+.||++|++||+|||++.|++.|...+++.++..++|++||.|.||.++++|++|+..+++|++.+|++++...+++|+.
T Consensus 13 l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~ 92 (339)
T 2q0z_X 13 VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 92 (339)
T ss_dssp ------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHH
T ss_pred eccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999887667889999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCC
Q 043190 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMN 1329 (1492)
Q Consensus 1250 K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~ 1329 (1492)
|+++||||||+|+++| .+|.+|+.+|+++|.||++||+||+..+||++++.++|+|+|||+||+|++ .+||+|||||+
T Consensus 93 K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~-~~pL~Qlp~i~ 170 (339)
T 2q0z_X 93 KTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK-DSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTT-SCGGGGSTTCC
T ss_pred HHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-CCceecCCCCC
Confidence 9999999999999999 799999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEeccCC
Q 043190 1330 NDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKMNSW 1406 (1492)
Q Consensus 1330 ~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~ 1406 (1492)
++.+++|+++|++|+++|.+++++++..+++ +.+++++.+++++||.++|++++++++. ..++.++++|++++.+
T Consensus 171 ~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~-- 248 (339)
T 2q0z_X 171 SEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE-- 248 (339)
T ss_dssp HHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS--
T ss_pred HHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECC--
Confidence 9999999999999999999999999998876 4468999999999999999999887654 4688999999999975
Q ss_pred CCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCcce--EEEEecCCCCCcceEEEEEEeCCCCCccEEEEEE
Q 043190 1407 KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLN--THMELPSGITTFQGMKLVVVSDCYLGFEQEHSIE 1484 (1492)
Q Consensus 1407 ~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~~~--~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~ 1484 (1492)
+....+|||+||+.|.|+||++|||.++|+|+.++|+++.+... .+|.+| . +|.++|+|++|||+|+|+|++++|.
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~-~g~~~~~v~~vSD~ylG~D~~~~i~ 326 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-A-TGAHNYTLYFMSDAYMGCDQEYKFS 326 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-S-SEEEEEEEEEEESSCSSCCEEEEEE
T ss_pred CCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccceEEEEEEECC-C-CCCeeEEEEEEcccccCcceEEEEE
Confidence 34567999999999999999999999999999999999877644 566688 3 6999999999999999999999999
Q ss_pred EEEecc
Q 043190 1485 ALVEQS 1490 (1492)
Q Consensus 1485 ~~v~~~ 1490 (1492)
++|++.
T Consensus 327 ~~v~~~ 332 (339)
T 2q0z_X 327 VDVKEA 332 (339)
T ss_dssp EEEBCC
T ss_pred EEEecC
Confidence 999754
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=452.69 Aligned_cols=306 Identities=17% Similarity=0.338 Sum_probs=280.2
Q ss_pred CCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccc--cCCC
Q 043190 336 SGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEV--KGGP 413 (1492)
Q Consensus 336 ~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~--~~~~ 413 (1492)
++.+.||++|++||+|||++.|+..|.+.+++.++..++|+++|.|+||+++++|++|+.++.+|+.+ +|+++ ++..
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~-~~~~~~~~~~~ 84 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKR-LPLRFPEHTSS 84 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTT-SSSCCCTTSCS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHh-CCCcccccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 88876 5566
Q ss_pred CChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 043190 414 SNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQF 493 (1492)
Q Consensus 414 ~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql 493 (1492)
..++.|+++||||||+|++++. ++.+|+.+|+++|.||++||+|||..+||+. +.++++|+|||.||+|++++||+||
T Consensus 85 ~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 85 GSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCC
Confidence 7899999999999999999987 8999999999999999999999999999999 9999999999999999999999999
Q ss_pred cccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEee---c-ccceEEEEEEEe
Q 043190 494 DKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSP---I-TRTVLKIGLAIT 567 (1492)
Q Consensus 494 ~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~---~-~~~~~~i~~~~~ 567 (1492)
| |||++.+++|+++|+ |+++|.++++++++++++ ++++++++.+++++||++++++.+++ + +++.+++.|+++
T Consensus 163 p-~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~ 241 (328)
T 3im1_A 163 P-HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLT 241 (328)
T ss_dssp T-TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEE
T ss_pred C-CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEE
Confidence 9 999999999999999 999999999999999998 77899999999999999999999975 6 578999999999
Q ss_pred cCCcccC------Cc-CCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcccc
Q 043190 568 PEFTWKD------HF-HGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLH 640 (1492)
Q Consensus 568 ~~f~~~~------~~-h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl~ 640 (1492)
++|.|+. ++ |++.|+||+||+|.+++++++.+++++.+. .+.+.+.++...|.+++|.++++||+|+|
T Consensus 242 ~~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~-----~~~~~~~f~~p~~g~~~~~v~~vsD~ylG 316 (328)
T 3im1_A 242 RDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE-----TQQYELEFDTPTSGKHNLTIWCVCDSYLD 316 (328)
T ss_dssp ESSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS-----EEEEEEEEECCCSEEEEEEEEEEESSCSS
T ss_pred ECCCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc-----ceEEEEEEEcCCCCcEEEEEEEEecCCcc
Confidence 9998853 44 688999999999999999999999888642 33444444444467789999999999999
Q ss_pred cceeEEeccc
Q 043190 641 AEAFYCISFH 650 (1492)
Q Consensus 641 ~~~~~~i~~~ 650 (1492)
++...++.+.
T Consensus 317 ~d~~~~~~l~ 326 (328)
T 3im1_A 317 ADKELSFEIN 326 (328)
T ss_dssp CCEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9998887653
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=453.27 Aligned_cols=307 Identities=24% Similarity=0.414 Sum_probs=253.9
Q ss_pred CceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCccccc-CCCCC
Q 043190 337 GNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK-GGPSN 415 (1492)
Q Consensus 337 ~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~-~~~~~ 415 (1492)
|.+.||++|+|||+|||++.|+..|.+.+++.++..++|+++|.|+||+++++|.+|+.++.+|++. +|++++ ...+.
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~-~~~~~~~~~~~~ 89 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK-VPHKLNNPKFND 89 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHH-SSSCCSSCCTTC
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHh-CCCccccCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 888885 35778
Q ss_pred hhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccc
Q 043190 416 KHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDK 495 (1492)
Q Consensus 416 ~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~ 495 (1492)
++.|+++||||||+|++++ .+|.+|+.+|+++|.||++||+||+..+||+.++.++++|+|||.||+|++++||+|||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp- 167 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLP- 167 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGST-
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCC-
Confidence 9999999999999999998 58999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEee---c-ccceEEEEEEEecC
Q 043190 496 ELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSP---I-TRTVLKIGLAITPE 569 (1492)
Q Consensus 496 ~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~---~-~~~~~~i~~~~~~~ 569 (1492)
+||++.+++|+++|+ |+++|.++++++++.+++ ++++++++.+++++||++++++.++| + +++.++++|+++++
T Consensus 168 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 168 HFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEEC
T ss_pred CCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEEC
Confidence 999999999999998 999999999999999999 67789999999999999999999986 5 47899999999998
Q ss_pred CcccCCcC------CcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcccccce
Q 043190 570 FTWKDHFH------GAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEA 643 (1492)
Q Consensus 570 f~~~~~~h------~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl~~~~ 643 (1492)
+.|+...| ++.|+||+||+|.++++|++++++++.++ ....++|++| .|.+++|.++++||+|+|++.
T Consensus 248 ~~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~----~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~ 321 (339)
T 2q0z_X 248 EEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK----AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQ 321 (339)
T ss_dssp SSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE----EEEEEEEECC--SSEEEEEEEEEEESSCSSCCE
T ss_pred CCCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccc----eEEEEEEECC--CCCCeeEEEEEEcccccCcce
Confidence 77765544 46899999999999999999999988754 2567889998 578899999999999999999
Q ss_pred eEEeccccc
Q 043190 644 FYCISFHNL 652 (1492)
Q Consensus 644 ~~~i~~~~~ 652 (1492)
..++++.-.
T Consensus 322 ~~~i~~~v~ 330 (339)
T 2q0z_X 322 EYKFSVDVK 330 (339)
T ss_dssp EEEEEEEEB
T ss_pred EEEEEEEEe
Confidence 999987643
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=447.29 Aligned_cols=387 Identities=24% Similarity=0.382 Sum_probs=284.0
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
++| .|+|+|.++++.+. .+++++++||||||||++|++|++..+.. +++++|++|+++|+.|+++++.+.++
T Consensus 181 ~~f-~ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~---- 252 (1108)
T 3l9o_A 181 YPF-TLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG---- 252 (1108)
T ss_dssp CSS-CCCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS----
T ss_pred CCC-CCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC----
Confidence 344 49999999999987 78999999999999999999999998864 78999999999999999999988763
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.++.++|+.... .+++|+|+|||+|..++.+. ...++++++|||||||++.+ +++..++.++..+
T Consensus 253 -~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~~--~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l------- 318 (1108)
T 3l9o_A 253 -DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL------- 318 (1108)
T ss_dssp -SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHHC--SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-------
T ss_pred -CccEEeCccccC----CCCCEEEeChHHHHHHHHcC--ccccccCCEEEEhhhhhccccchHHHHHHHHHhc-------
Confidence 578899987643 46899999999998877763 33478999999999999876 6788887776543
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCccccccc---------------ccc---
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCPRM---------------NSM--- 903 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~---------------~~~--- 903 (1492)
+...++|+||||+++..+++.|++.... ....+....+++++...+............ ..+
T Consensus 319 ~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~ 398 (1108)
T 3l9o_A 319 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 398 (1108)
T ss_dssp CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh
Confidence 4689999999999999999999875321 233345567778876655322111100000 000
Q ss_pred ---------------------------ChhHHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcc----c
Q 043190 904 ---------------------------NKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ----F 950 (1492)
Q Consensus 904 ---------------------------~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~----~ 950 (1492)
.......+ ......+++||||++++.|+.++..|............ +
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 478 (1108)
T 3l9o_A 399 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 478 (1108)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred hcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 00111111 12245679999999999999999887543222111000 0
Q ss_pred CCCChHHHHHHHhhc-CcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEeccee
Q 043190 951 LGMPEEDLQMVLSQV-TDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029 (1492)
Q Consensus 951 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~ 1029 (1492)
.......+...-..+ ....+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+....
T Consensus 479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~ 558 (1108)
T 3l9o_A 479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 558 (1108)
T ss_dssp GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE
T ss_pred HHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcc
Confidence 000000000000000 1134556778899999999999999999999999999999999999999999999999998888
Q ss_pred eeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC-cHHHHHHhh-cCCCceeecccccch
Q 043190 1030 YDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP-KKSFYKKFL-YEPFPVESSLRDQLH 1094 (1492)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~-~~~~~~~~l-~~~~pies~l~~~l~ 1094 (1492)
|++... .+++..+|+||+|||||.|.|..|.|++++.+. ....+.+++ ..+.|+.|.+.....
T Consensus 559 ~d~~~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~ 623 (1108)
T 3l9o_A 559 WDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 623 (1108)
T ss_dssp ESSSCE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHH
T ss_pred cCcccc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHH
Confidence 887654 467899999999999999999999999999876 445566666 456788888866433
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=435.71 Aligned_cols=380 Identities=26% Similarity=0.412 Sum_probs=283.7
Q ss_pred hhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 682 ALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
..++|. |+|+|.++++.+. .+++++++||||||||++|+++++..+.. +.+++|++|+++|+.|+++++.+.++
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~-~g~~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHH-HTCEEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCCC-CCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 345776 9999999999987 68899999999999999999999988764 78999999999999999999988763
Q ss_pred cCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhh
Q 043190 762 LGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~ 840 (1492)
+++.++|+.... .+++|+|+|||+|..++.++ ...++++++|||||||.+.+ ++|..++.++..+
T Consensus 155 ---~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l----- 220 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL----- 220 (1010)
T ss_dssp ---CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-----
T ss_pred ---CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhcccchhHHHHHHHHhc-----
Confidence 688899987644 36799999999998877653 34588999999999999865 5888888776543
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCc-ccc--cc------------cccc-
Q 043190 841 QTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGK-FYC--PR------------MNSM- 903 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~-~~~--~~------------~~~~- 903 (1492)
+...++|+||||++|..++++|++... .....+....+|+++...+...... .+. .. ...+
T Consensus 221 --~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 221 --PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred --CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 458999999999999999999986321 1223334456777776655432100 000 00 0000
Q ss_pred -----------------------------ChhHHHHHh--hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC
Q 043190 904 -----------------------------NKPAYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952 (1492)
Q Consensus 904 -----------------------------~~~~~~~l~--~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 952 (1492)
.......+. ......++||||++++.|+.++..|.... +..
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~--------~~~ 370 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD--------FNS 370 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSC--------CCC
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC--------CCC
Confidence 000111111 12245689999999999999998773310 000
Q ss_pred CC-hHHHH----HHHhhcC--------cHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCC
Q 043190 953 MP-EEDLQ----MVLSQVT--------DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA 1019 (1492)
Q Consensus 953 ~~-~~~~~----~~~~~~~--------~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~ 1019 (1492)
.. ...+. .....+. ...+...+..+|++|||+|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 371 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~ 450 (1010)
T 2xgj_A 371 DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPA 450 (1010)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCB
T ss_pred hHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCC
Confidence 00 00011 1111111 13455677889999999999999999999999999999999999999999999
Q ss_pred cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC-cHHHHHHhh-cCCCceeecccccc
Q 043190 1020 HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP-KKSFYKKFL-YEPFPVESSLRDQL 1093 (1492)
Q Consensus 1020 ~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~-~~~~~~~~l-~~~~pies~l~~~l 1093 (1492)
+++||++...||+... .+.+..+|.||+|||||.|.|..|.|++++++. +...+.+++ ..+.|++|.+....
T Consensus 451 ~~vVI~~~~kfd~~~~--rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~ 524 (1010)
T 2xgj_A 451 KTVVFTSVRKWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 524 (1010)
T ss_dssp SEEEESCSEEECSSCE--EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCH
T ss_pred ceEEEeCCcccCCcCC--ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcH
Confidence 9999999988987543 467899999999999999988899999999876 556667765 45667888876543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=416.50 Aligned_cols=359 Identities=18% Similarity=0.259 Sum_probs=265.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~L 746 (1492)
|+.+..+.+. ||..|+|+|.++++.++. .+++++++||||||||++|++|+++.+...+ +.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 4455555543 899999999999999985 3689999999999999999999999876532 3589999999999
Q ss_pred HHHHHHHHHHHhhhc---cCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc
Q 043190 747 VRERMNDWKDRLVSQ---LGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~---~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~ 819 (1492)
|.|+++.+.+.+... .+..+..+.|+....... ..+++|+|+||+++..++.+. ....++++++|||||||+
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHHH
Confidence 999999998865432 245577777776533211 237899999999998777653 223578899999999998
Q ss_pred cCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeE-ecCCCcccc---CcEEEEeccCC
Q 043190 820 LGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLF-NFKPSVRPV---PLEVHIQGYPG 893 (1492)
Q Consensus 820 l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~-~~~~~~r~~---~l~~~~~~~~~ 893 (1492)
+.+ .+++.++.++..+.........+.|++++|||+++. ..+..++...+..++ .......+. .+.........
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 764 588899999998887665556688999999999883 555555544332222 111111111 11111110000
Q ss_pred ccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 894 KFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 894 ~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
...........+...+.....++++||||+|++.|+.++..|.+...
T Consensus 318 --~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------------------------------- 364 (563)
T 3i5x_A 318 --FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------- 364 (563)
T ss_dssp --TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------------------------------
T ss_pred --hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------------------------------
Confidence 00000011111223334446778999999999999999988865421
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+||||
T Consensus 365 ~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~------p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 365 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV------PSELANYIHRIGRTA 434 (563)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC------CSSTTHHHHHHTTSS
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECC------CCchhhhhhhcCccc
Confidence 1467899999999999999999999999999999999999999999999998 543 235889999999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhh
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
|.| ..|.|++++.+.+...+..+.
T Consensus 435 R~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 435 RSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp CTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred cCC--CCceEEEEEchhHHHHHHHHH
Confidence 987 889999999998888777765
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=395.50 Aligned_cols=330 Identities=17% Similarity=0.217 Sum_probs=242.9
Q ss_pred cCchhHhhh--cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHH
Q 043190 675 LGNNIYEAL--YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~L 746 (1492)
|+....+.+ .||..|+|+|.++++.++ ++++++++||||||||++|++|++..+... .+.++||++|||+|
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreL 141 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTREL 141 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHH
Confidence 444445544 399999999999999998 789999999999999999999999887543 25699999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~- 822 (1492)
|.|+++++.+. ....+.++..++|+...... ...+++|+|+||+++..++.+.. ..+++++++|+||||++.+
T Consensus 142 a~Q~~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~--~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 142 AIQIFNEARKF-AFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--ITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp HHHHHHHHHHH-TTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS--CCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHH-hccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC--cccccCCeEEEccHhhhhcc
Confidence 99999999874 44447888888888764322 23578999999999988877633 3478999999999998754
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHH-HhcCCcceeEecCCC-ccccCcEEEEeccCCcccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLAD-WLGVGEIGLFNFKPS-VRPVPLEVHIQGYPGKFYCPR 899 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~-~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~ 899 (1492)
.++..+..++..+. .....|++++|||+++. ..++. ++. ... .+..... .....+...+.....
T Consensus 219 gf~~~~~~i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~-~i~~~~~~~~~~~i~~~~~~~~~------ 285 (434)
T 2db3_A 219 GFSEDMRRIMTHVT-----MRPEHQTLMFSATFPEEIQRMAGEFLK-NYV-FVAIGIVGGACSDVKQTIYEVNK------ 285 (434)
T ss_dssp TTHHHHHHHHHCTT-----SCSSCEEEEEESCCCHHHHHHHHTTCS-SCE-EEEESSTTCCCTTEEEEEEECCG------
T ss_pred CcHHHHHHHHHhcC-----CCCCceEEEEeccCCHHHHHHHHHhcc-CCE-EEEeccccccccccceEEEEeCc------
Confidence 45555555554321 24578999999999752 33332 332 111 1111111 111112222111110
Q ss_pred ccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
......+...+... ..++||||++++.|+.++..|.+ .++.+.
T Consensus 286 -~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~----------------------------------~~~~~~ 328 (434)
T 2db3_A 286 -YAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSE----------------------------------KEFPTT 328 (434)
T ss_dssp -GGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEE
T ss_pred -HHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHh----------------------------------CCCCEE
Confidence 00011122333332 23499999999999999987743 256789
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ 1059 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~ 1059 (1492)
.+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| .
T Consensus 329 ~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~------p~~~~~y~qriGR~gR~g--~ 396 (434)
T 2db3_A 329 SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDM------PSKIDDYVHRIGRTGRVG--N 396 (434)
T ss_dssp EESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSC------CSSHHHHHHHHTTSSCTT--C
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECC------CCCHHHHHHHhcccccCC--C
Confidence 9999999999999999999999999999999999999999999998 443 336899999999999998 8
Q ss_pred ceEEEEEecCC
Q 043190 1060 HGKAVILVHEP 1070 (1492)
Q Consensus 1060 ~G~~i~l~~~~ 1070 (1492)
.|.|++|+.+.
T Consensus 397 ~G~a~~~~~~~ 407 (434)
T 2db3_A 397 NGRATSFFDPE 407 (434)
T ss_dssp CEEEEEEECTT
T ss_pred CCEEEEEEecc
Confidence 99999999854
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=422.17 Aligned_cols=379 Identities=26% Similarity=0.425 Sum_probs=285.5
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
.|+|+ |+|+|.++++.++ .+++++++||||||||++|++++...+.. +.+++|++|+++|+.|+++++.+.+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~--- 107 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFD--- 107 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCCC-CCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcC---
Confidence 34666 8999999999998 78999999999999999999999887654 78999999999999999999887543
Q ss_pred CCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhc
Q 043190 763 GKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~ 841 (1492)
+.+++.++|+...+ ..++|+|+|||++...+.. ....++++++|||||||++.+ +++..++.++..+
T Consensus 108 ~~~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l------ 175 (997)
T 4a4z_A 108 DVNIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML------ 175 (997)
T ss_dssp -CCEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS------
T ss_pred CCeEEEEeCCCccC----CCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHhc------
Confidence 67899999987543 4589999999999777765 334578999999999998865 6899888877643
Q ss_pred cCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCcc--------ccc--------------
Q 043190 842 TERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKF--------YCP-------------- 898 (1492)
Q Consensus 842 ~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~--------~~~-------------- 898 (1492)
+...++|++|||++|..++++|++... ..++.+....+++|+...+....... +..
T Consensus 176 -~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 176 -PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp -CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred -ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 457999999999999999999998543 45566677888888876553211000 000
Q ss_pred --------------------------cc----------------------------------cccChhHHHH---HhhcC
Q 043190 899 --------------------------RM----------------------------------NSMNKPAYAA---ICTHS 915 (1492)
Q Consensus 899 --------------------------~~----------------------------------~~~~~~~~~~---l~~~~ 915 (1492)
+. ....+..+.. .....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 00 0001111111 12234
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC-ChHHH----HHHHhhcC--------cHHHHHHhccceEeec
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM-PEEDL----QMVLSQVT--------DQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~--------~~~l~~~~~~~v~~~h 982 (1492)
...++||||+|++.|+.++..|.... +... ....+ .+....+. ...+...+..++++||
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~--------~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGIN--------FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCC--------CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 56799999999999999988773210 0000 00111 11111121 1346677888999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceE
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGK 1062 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~ 1062 (1492)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|+.+...||+... .+++..+|.||+|||||.|.+..|.
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~--~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGL--RELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEE--EECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccC--CCCCHHHHhHHhcccccCCCCcceE
Confidence 99999999999999999999999999999999999999999988888887643 6789999999999999999999999
Q ss_pred EEEEec--CCcHHHHHHhh-cCCCceeecccc
Q 043190 1063 AVILVH--EPKKSFYKKFL-YEPFPVESSLRD 1091 (1492)
Q Consensus 1063 ~i~l~~--~~~~~~~~~~l-~~~~pies~l~~ 1091 (1492)
|++++. ..+...+.+++ ..+.+++|.+..
T Consensus 485 vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 485 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp EEEECCSSCCCHHHHHHHHHSCCCCCCCCCCC
T ss_pred EEEecCCCcchHHHHHHHhcCCCccccccccc
Confidence 999994 34556666665 456677776543
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=386.64 Aligned_cols=356 Identities=18% Similarity=0.203 Sum_probs=252.8
Q ss_pred ccCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEE
Q 043190 663 ELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVV 738 (1492)
Q Consensus 663 ~l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l 738 (1492)
++.++..+....++....+.+. ||..|+|+|.++++.++.+ +++++++||||||||++|++|++..+... .+++++
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3444455544456666666655 9999999999999999843 48999999999999999999999987653 345899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccc
Q 043190 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 739 ~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
|++|+++|+.|+++.+.+......+..+....|+..........++|+|+||+++..++.+. ....+.+++++|+||||
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHH
Confidence 99999999999999888755444467888888876655555567899999999998777552 22346899999999999
Q ss_pred ccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccc
Q 043190 819 LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFY 896 (1492)
Q Consensus 819 ~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~ 896 (1492)
++.+..+.. ..+..+ ....+.+.+++++|||+++. ..+........ ..+....... ...+.........
T Consensus 179 ~~~~~~~~~--~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--- 249 (412)
T 3fht_A 179 VMIATQGHQ--DQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYVLCSS--- 249 (412)
T ss_dssp HHHSTTTTH--HHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC-EEECCCGGGSSCTTEEEEEEECSS---
T ss_pred HHhhcCCcH--HHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHhcCCC-eEEeeccccccccCceEEEEEcCC---
Confidence 875422211 111111 22345688999999999763 23333322222 1221111111 1111111111100
Q ss_pred cccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhcc
Q 043190 897 CPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQF 976 (1492)
Q Consensus 897 ~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 976 (1492)
..........+.....++++||||++++.++.++..|.+ .+.
T Consensus 250 ----~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~----------------------------------~~~ 291 (412)
T 3fht_A 250 ----RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK----------------------------------EGH 291 (412)
T ss_dssp ----HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHH----------------------------------TTC
T ss_pred ----hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHh----------------------------------CCC
Confidence 000111122223334567999999999999999987743 256
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCC
Q 043190 977 GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ 1056 (1492)
Q Consensus 977 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g 1056 (1492)
++..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+.+.....+.+..+|+||+|||||.|
T Consensus 292 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g 367 (412)
T 3fht_A 292 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG 367 (412)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE----SSCCBCSSSSBCHHHHHHHHTTSSCTT
T ss_pred eEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE----ECCCCCCCCCcchheeecccCcccCCC
Confidence 7899999999999999999999999999999999999999999999997 554433223357899999999999987
Q ss_pred CCCceEEEEEecCCcH
Q 043190 1057 YDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1057 ~~~~G~~i~l~~~~~~ 1072 (1492)
..|.|++++.+.+.
T Consensus 368 --~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 368 --KRGLAVNMVDSKHS 381 (412)
T ss_dssp --CCEEEEEEECSHHH
T ss_pred --CCceEEEEEcChhh
Confidence 88999999987653
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=400.58 Aligned_cols=359 Identities=18% Similarity=0.255 Sum_probs=261.4
Q ss_pred cCchhHhhh--cCCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHH
Q 043190 675 LGNNIYEAL--YNFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~L 746 (1492)
|+.+..+.+ +||..|+|+|.++++.++.+ +++++++||||||||++|++|+++.+.... +.++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 344444444 39999999999999998853 689999999999999999999999876532 4589999999999
Q ss_pred HHHHHHHHHHHhhh---ccCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc
Q 043190 747 VRERMNDWKDRLVS---QLGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 747 a~q~~~~~~~~~~~---~~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~ 819 (1492)
|.|+++.+.+.+.. .....+..+.|+....... ..+++|+|+||+++..++.+. ....++.+++|||||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChHH
Confidence 99999999886532 1245677777765533211 236899999999998777653 123578899999999998
Q ss_pred cCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEe-cCCCccc---cCcEEEEeccCC
Q 043190 820 LGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFN-FKPSVRP---VPLEVHIQGYPG 893 (1492)
Q Consensus 820 l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~-~~~~~r~---~~l~~~~~~~~~ 893 (1492)
+.+ .+++.++.++..+...........+++++|||+++. ..+..++...+..++. ......+ ..+.........
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 864 578888888888877655555688999999999873 5555554433322221 1111111 111111110000
Q ss_pred ccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 894 KFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 894 ~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
...........+...+....+++++||||+|++.|+.++..|.+...
T Consensus 267 --~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------------- 313 (579)
T 3sqw_A 267 --FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------- 313 (579)
T ss_dssp --TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------------------------------
T ss_pred --hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------------------------------
Confidence 00000011111222333346678999999999999999988865421
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
.+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||||
T Consensus 314 ~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~~------p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV------PSELANYIHRIGRTA 383 (579)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC------CSSTTHHHHHHTTSS
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE----cCC------CCCHHHhhhhccccc
Confidence 1467899999999999999999999999999999999999999999999998 543 235889999999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhh
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
|.| ..|.|++++.+.+...+..+.
T Consensus 384 R~g--~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 384 RSG--KEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp CTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred cCC--CCceEEEEEcccHHHHHHHHH
Confidence 988 899999999998877766654
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=404.84 Aligned_cols=359 Identities=18% Similarity=0.207 Sum_probs=145.9
Q ss_pred cCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEE
Q 043190 664 LLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVY 739 (1492)
Q Consensus 664 l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~ 739 (1492)
+.+..+++...|....++.+. ||..|+|+|.++++.++.+ +++++++||||||||++|++|++..+... .++++||
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li 167 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE
T ss_pred ccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE
Confidence 344455555556667666665 9999999999999999843 48999999999999999999999887653 2458999
Q ss_pred EcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc
Q 043190 740 IAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 740 i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~ 819 (1492)
++|+++|+.|+++.+.+......+..+....|+..........++|+|+||+++..++.+.. ...++++++|||||+|.
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADV 246 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEEEECCHHH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEEEEECHHH
Confidence 99999999999998887544334667777777665554445577999999999988776532 23468999999999998
Q ss_pred cCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCcccc
Q 043190 820 LGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 820 l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~ 897 (1492)
+.+..+ +.... ..+....+...+++++|||+++. ..++..+.... ..+....... ...+...+. ..
T Consensus 247 ~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~------~~ 314 (479)
T 3fmp_B 247 MIATQG--HQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYV------LC 314 (479)
T ss_dssp HHTSTT--HHHHH---HHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC----------------------
T ss_pred HhhcCC--cHHHH---HHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEEeccccccCcCCceEEEE------Ee
Confidence 754322 11111 12223345689999999999873 23333332221 1221111111 001110000 00
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
.. ..........+......+++||||++++.|+.++..|.. .+.+
T Consensus 315 ~~-~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~----------------------------------~~~~ 359 (479)
T 3fmp_B 315 SS-RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK----------------------------------EGHQ 359 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHh----------------------------------CCcc
Confidence 00 000111112222334567899999999999998877733 2567
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+.++||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+ |+.+.....+.+..+|+||+|||||.|
T Consensus 360 v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~----~d~p~~~~~~~s~~~~~Qr~GRagR~g- 434 (479)
T 3fmp_B 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG- 434 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE----ecCCCCCccCCCHHHHHHHhcccccCC-
Confidence 899999999999999999999999999999999999999999999997 554432222245789999999999987
Q ss_pred CCceEEEEEecCCcHHHHH
Q 043190 1058 DQHGKAVILVHEPKKSFYK 1076 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~ 1076 (1492)
..|.|++++.+.+...+.
T Consensus 435 -~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 435 -KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp -------------------
T ss_pred -CCceEEEEEcCcchHHHH
Confidence 889999999876644333
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=402.18 Aligned_cols=457 Identities=16% Similarity=0.182 Sum_probs=305.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
..|++.|.+++..++.++++++++||||||||++..+.++..... ..+.++++++|+++|+.|+++++...++...+..
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~ 171 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE 171 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhe
Confidence 678999999999988788899999999999999544443332222 1256799999999999999988877664433444
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
++... ..+......++|+++|||++...+.. ...+.++++||+||+|. |+...+.++..++.+... .++
T Consensus 172 vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~----R~ld~d~~~~~l~~l~~~-~~~ 240 (773)
T 2xau_A 172 VGYSI---RFENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHE----RTLATDILMGLLKQVVKR-RPD 240 (773)
T ss_dssp EEEEE---TTEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGG----CCHHHHHHHHHHHHHHHH-CTT
T ss_pred eccee---ccccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccc----cccchHHHHHHHHHHHHh-CCC
Confidence 43211 11222235789999999988655543 34588999999999994 333333444444444332 347
Q ss_pred eEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEec
Q 043190 846 VRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVS 925 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~ 925 (1492)
.++|+||||+ +.+++++|++... ++. ...+..++...+...+...+. .... .....+....+++++||||+
T Consensus 241 ~~iIl~SAT~-~~~~l~~~~~~~~--vi~--v~gr~~pv~~~~~~~~~~~~~---~~~l-~~l~~~~~~~~~g~iLVF~~ 311 (773)
T 2xau_A 241 LKIIIMSATL-DAEKFQRYFNDAP--LLA--VPGRTYPVELYYTPEFQRDYL---DSAI-RTVLQIHATEEAGDILLFLT 311 (773)
T ss_dssp CEEEEEESCS-CCHHHHHHTTSCC--EEE--CCCCCCCEEEECCSSCCSCHH---HHHH-HHHHHHHHHSCSCEEEEECS
T ss_pred ceEEEEeccc-cHHHHHHHhcCCC--ccc--ccCcccceEEEEecCCchhHH---HHHH-HHHHHHHHhcCCCCEEEECC
Confidence 8999999999 6788999997433 222 233445555443322211110 0000 11112222346789999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh-----cC
Q 043190 926 SRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA-----NN 1000 (1492)
Q Consensus 926 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~-----~g 1000 (1492)
++++++.++..|.+.... + . ......+..+.++||+|++++|..+++.|+ +|
T Consensus 312 ~~~~i~~l~~~L~~~~~~--------------l---~------~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 312 GEDEIEDAVRKISLEGDQ--------------L---V------REEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------H---H------HHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred CHHHHHHHHHHHHHHHHh--------------h---c------ccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 999999999888653210 0 0 000113567999999999999999999999 99
Q ss_pred CceEEEeccccccccCCCCcEEEEec----ceeeeCccCccc----cCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1001 KIQVLVCTSTLAWGVNLPAHLVIIKG----TEYYDGKTKRYV----DFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1001 ~~~vLvaT~~l~~Gvdip~~~~VI~~----~~~~~~~~~~~~----~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
.++|||||+++++|||+|++++||+. .+.||+..+... +.|.++|.||+|||||. ..|.||.++++.+.
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999999999999983 356888765322 77899999999999997 58999999965432
Q ss_pred HHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHH
Q 043190 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQN 1152 (1492)
Q Consensus 1073 ~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~ 1152 (1492)
...+.....| ..+...|...++.....| +.+..+ ..| +.+ + ..+.+++
T Consensus 446 --~~~l~~~~~p--Ei~r~~L~~~~L~l~~~g-i~~~~~------f~~-------------~~~---p-----~~~~i~~ 493 (773)
T 2xau_A 446 --QKELIEQSYP--EILRSNLSSTVLELKKLG-IDDLVH------FDF-------------MDP---P-----APETMMR 493 (773)
T ss_dssp --HHTSCSSCCC--GGGGSCCHHHHHHHHHTT-CCCGGG------CCC-------------SSC---C-----CHHHHHH
T ss_pred --cccccccCCC--ccccCcHHHHHHHHHHcC-CCChhh------ccc-------------cCC---C-----cHHHHHH
Confidence 1223222222 223334444444433333 222111 000 011 1 1356788
Q ss_pred HHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhH
Q 043190 1153 TFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226 (1492)
Q Consensus 1153 ~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~ 1226 (1492)
+++.|.+.|+|+.++ .+|++|+.+|.+|++|.++++++.+.... +...++.++|..+ +.++.+|..+..
T Consensus 494 a~~~L~~lgald~~~---~lT~lG~~~a~~pl~p~~~~~l~~~~~~~-c~~~~l~i~a~ls-~~~~f~~~~~~~ 562 (773)
T 2xau_A 494 ALEELNYLACLDDEG---NLTPLGRLASQFPLDPMLAVMLIGSFEFQ-CSQEILTIVAMLS-VPNVFIRPTKDK 562 (773)
T ss_dssp HHHHHHHTTSBCTTS---CBCHHHHHHTTSSSCHHHHHHHHHGGGGT-CHHHHHHHHHHHT-SCCCBCCCTTCH
T ss_pred HHHHHHHcCCcccCC---CcChhhhhhccccCCHHHHHHHHhhcccC-chhHHHHHHHhcc-cCCcccCChHHH
Confidence 999999999996443 47999999999999999999999876543 4566666665544 356666665543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=396.39 Aligned_cols=335 Identities=19% Similarity=0.282 Sum_probs=251.7
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++..|||..|+|+|.++++.++ .++++++.+|||+|||++|++|++.. .+++||++|+++|+.|+++.+.+.
T Consensus 34 ~~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 34 DILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp HHHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHhc
Confidence 556777899999999999999998 68999999999999999999999763 679999999999999999988763
Q ss_pred hhhccCCEEEEEcCCCCcchh---------ccCCCcEEEECchhhh---HhhhcccCccccCcccEEEEecccccCC---
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM---------ALLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILDEIHLLGA--- 822 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViDEaH~l~~--- 822 (1492)
|+++..++|+...... .....+|+|+|||++. .++........+.+++++||||||++.+
T Consensus 108 -----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 108 -----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp -----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 7889999998765422 2347899999999873 2333222223367899999999999853
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
++.+.+..+ ..++.. .++.+++++|||+++. +++..+++......+.. ......+...+..... ..
T Consensus 183 dfr~~~~~l-~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~--~~~r~nl~~~v~~~~~-----~~ 250 (591)
T 2v1x_A 183 DFRPDYKAL-GILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA--SFNRPNLYYEVRQKPS-----NT 250 (591)
T ss_dssp TCCGGGGGG-GHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC--CCCCTTEEEEEEECCS-----SH
T ss_pred ccHHHHHHH-HHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec--CCCCcccEEEEEeCCC-----cH
Confidence 244555432 122221 2468899999999873 67888888765443332 2222222222221110 00
Q ss_pred cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 901 NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 901 ~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
......+...+....+++++||||+|++.++.++..|.. .+..+..
T Consensus 251 ~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~----------------------------------~g~~~~~ 296 (591)
T 2v1x_A 251 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN----------------------------------LGIHAGA 296 (591)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEE
T ss_pred HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH----------------------------------CCCCEEE
Confidence 011112233333344678999999999999999988743 2678999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| .+
T Consensus 297 ~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~------p~s~~~y~Qr~GRaGR~G--~~ 364 (591)
T 2v1x_A 297 YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSM------SKSMENYYQESGRAGRDD--MK 364 (591)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSC------CSSHHHHHHHHTTSCTTS--SC
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCC------CCCHHHHHHHhccCCcCC--CC
Confidence 999999999999999999999999999999999999999999998 443 336999999999999987 79
Q ss_pred eEEEEEecCCcHHHHHHhhcC
Q 043190 1061 GKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
|.|++++...+......++..
T Consensus 365 g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 365 ADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp EEEEEEECHHHHHHHHHHTTT
T ss_pred ceEEEEEChHHHHHHHHHHhh
Confidence 999999988887777666643
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=385.80 Aligned_cols=343 Identities=17% Similarity=0.188 Sum_probs=244.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-------------------
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS------------------- 733 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~------------------- 733 (1492)
++....+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|++..+...+
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 3334444443 99999999999999988 7899999999999999999999998764321
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCccc
Q 043190 734 DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810 (1492)
Q Consensus 734 ~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~ 810 (1492)
+++++|++|+++|+.|+++.+.+... ..+.++..++|+...... ...+++|+|+||+++..++... ...+++++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--KIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--CcChhhCc
Confidence 26799999999999999999987543 348889999988764321 2346899999999998877753 33478899
Q ss_pred EEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHH-HHhcCCcceeEecCCCccccCcEEE
Q 043190 811 LMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLA-DWLGVGEIGLFNFKPSVRPVPLEVH 887 (1492)
Q Consensus 811 liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~ 887 (1492)
+||+||||++.+ .++..+..++.... .......+++++|||+++. ..+. .|++.. ..+........+..+...
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 253 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQK 253 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCHHHHHHHHHHCSSC-EEEEEC----CCSSEEEE
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC-EEEEeCCCCCCccCceEE
Confidence 999999998753 34444444433110 0112368999999999762 3333 344322 111111111111112221
Q ss_pred EeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCc
Q 043190 888 IQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTD 967 (1492)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1492)
+..... ......+...+.....++++||||++++.++.++..|.+
T Consensus 254 ~~~~~~-------~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------------------------- 298 (417)
T 2i4i_A 254 VVWVEE-------SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH---------------------------- 298 (417)
T ss_dssp EEECCG-------GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH----------------------------
T ss_pred EEEecc-------HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH----------------------------
Confidence 111110 011112333444445678999999999999999887743
Q ss_pred HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHH
Q 043190 968 QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQ 1047 (1492)
Q Consensus 968 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Q 1047 (1492)
.+..+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+|
T Consensus 299 ------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~------p~s~~~~~Q 362 (417)
T 2i4i_A 299 ------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDL------PSDIEEYVH 362 (417)
T ss_dssp ------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSC------CSSHHHHHH
T ss_pred ------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcC------CCCHHHHHH
Confidence 2567999999999999999999999999999999999999999999999997 443 336899999
Q ss_pred hhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1048 MMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1048 r~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
|+|||||.| ..|.|++++++.+...+.++
T Consensus 363 r~GR~gR~g--~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 363 RIGRTGRVG--NLGLATSFFNERNINITKDL 391 (417)
T ss_dssp HHTTBCC----CCEEEEEEECGGGGGGHHHH
T ss_pred hcCccccCC--CCceEEEEEccccHHHHHHH
Confidence 999999988 78999999988775544433
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=376.25 Aligned_cols=345 Identities=19% Similarity=0.272 Sum_probs=248.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~ 750 (1492)
++....+.+. ||..|+|+|.++++.++.+ +++++++||||||||++|+++++..+... .+++++|++|+++|+.|+
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 91 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQT 91 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHH
Confidence 3445555554 8999999999999999843 28999999999999999999999987643 467999999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
++.+.+ +....+..+....|+.... ....+++|+|+||+++..++.+. ...+.++++||+||||.+.+..+ +..
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~~~~--~~~ 165 (395)
T 3pey_A 92 LEVVQE-MGKFTKITSQLIVPDSFEK-NKQINAQVIVGTPGTVLDLMRRK--LMQLQKIKIFVLDEADNMLDQQG--LGD 165 (395)
T ss_dssp HHHHHH-HTTTSCCCEEEESTTSSCT-TSCBCCSEEEECHHHHHHHHHTT--CBCCTTCCEEEEETHHHHHHSTT--HHH
T ss_pred HHHHHH-HhcccCeeEEEEecCchhh-hccCCCCEEEEcHHHHHHHHHcC--CcccccCCEEEEEChhhhcCccc--cHH
Confidence 999887 4444477788777765433 23347899999999998777653 33478899999999998754322 222
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYA 909 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1492)
.+.++ ....+...+++++|||+++. ..+..++......+...........+......... .........
T Consensus 166 ~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~ 235 (395)
T 3pey_A 166 QCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN-------EADKFDVLT 235 (395)
T ss_dssp HHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS-------HHHHHHHHH
T ss_pred HHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc-------hHHHHHHHH
Confidence 22222 22345678999999999763 44444443332221111111111112221111100 000112233
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+.....++++||||++++.++.++..|.+ .+..+..+||+++..+
T Consensus 236 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----------------------------------~~~~~~~~~~~~~~~~ 281 (395)
T 3pey_A 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKS----------------------------------EGHEVSILHGDLQTQE 281 (395)
T ss_dssp HHHTTTTSSEEEEECSCHHHHHHHHHHHHH----------------------------------TTCCCEEECTTSCHHH
T ss_pred HHHHhccCCCEEEEeCCHHHHHHHHHHHHh----------------------------------cCCcEEEeCCCCCHHH
Confidence 334445678999999999999999887743 2567899999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..+++.|++|+.+|||||+++++|+|+|++++||+ |+.+.......+..+|+||+|||||.| ..|.|++++.+
T Consensus 282 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~ 355 (395)
T 3pey_A 282 RDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHD 355 (395)
T ss_dssp HHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECS
T ss_pred HHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEec
Confidence 999999999999999999999999999999999997 554432223347899999999999987 78999999987
Q ss_pred CcHHHH
Q 043190 1070 PKKSFY 1075 (1492)
Q Consensus 1070 ~~~~~~ 1075 (1492)
.+...+
T Consensus 356 ~~~~~~ 361 (395)
T 3pey_A 356 KNSFNI 361 (395)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 654433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=377.65 Aligned_cols=339 Identities=15% Similarity=0.247 Sum_probs=245.3
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+. ||..|+|+|.++++.++ .++++++++|||||||++|++|+++.+.. ..+.+++|++|+++|+.|++
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~ 122 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQ 122 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHH
Confidence 4445555554 99999999999999998 67899999999999999999999998753 24689999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+.+ +....+..+..+.|+...... ...+++|+|+||+++..++++. ...+.+++++|+||||.+.+ .+...
T Consensus 123 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~~~~~~~~ 199 (410)
T 2j0s_A 123 KGLLA-LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEMLNKGFKEQ 199 (410)
T ss_dssp HHHHH-HTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHH-HhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHHhhhhHHH
Confidence 99987 444558888888887654322 1236799999999998887763 33467899999999998754 33222
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHH-HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLA-DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
+.. +....+...+++++|||+++. .++. .++. .+..+...........+...+...... ....
T Consensus 200 ~~~-------i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~ 264 (410)
T 2j0s_A 200 IYD-------VYRYLPPATQVVLISATLPHEILEMTNKFMT-DPIRILVKRDELTLEGIKQFFVAVERE-------EWKF 264 (410)
T ss_dssp HHH-------HHTTSCTTCEEEEEESCCCHHHHTTGGGTCS-SCEEECCCGGGCSCTTEEEEEEEESST-------THHH
T ss_pred HHH-------HHHhCccCceEEEEEcCCCHHHHHHHHHHcC-CCEEEEecCccccCCCceEEEEEeCcH-------HhHH
Confidence 222 222345678999999999752 1222 2222 111111100111111122211111100 0011
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
..+..+......+++||||++++.++.++..|.+ .+..+..+||++
T Consensus 265 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~h~~~ 310 (410)
T 2j0s_A 265 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE----------------------------------ANFTVSSMHGDM 310 (410)
T ss_dssp HHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCCEEECTTS
T ss_pred HHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHh----------------------------------CCCceEEeeCCC
Confidence 1222222333456899999999999999887743 256789999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|++
T Consensus 311 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~ 378 (410)
T 2j0s_A 311 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDL------PNNRELYIHRIGRSGRYG--RKGVAIN 378 (410)
T ss_dssp CHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSC------CSSHHHHHHHHTTSSGGG--CCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECC------CCCHHHHHHhcccccCCC--CceEEEE
Confidence 9999999999999999999999999999999999999998 443 235899999999999987 8899999
Q ss_pred EecCCcHHHHHHh
Q 043190 1066 LVHEPKKSFYKKF 1078 (1492)
Q Consensus 1066 l~~~~~~~~~~~~ 1078 (1492)
++.+.+...+.++
T Consensus 379 ~~~~~~~~~~~~i 391 (410)
T 2j0s_A 379 FVKNDDIRILRDI 391 (410)
T ss_dssp EEEGGGHHHHHHH
T ss_pred EecHHHHHHHHHH
Confidence 9998886665443
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=381.58 Aligned_cols=340 Identities=16% Similarity=0.247 Sum_probs=233.3
Q ss_pred cCchhHhhh--cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEAL--YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+ +||..|+|+|.++++.++ .+++++++||||||||++|++++++.+... .+.+++|++|+++|+.|++
T Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 125 (414)
T 3eiq_A 47 LSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ 125 (414)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHH
Confidence 444444444 399999999999999998 688999999999999999999999987653 4678999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh----ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM----ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~----~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.+. ....+..+....|+...... ....++|+|+||+++...+.+. ...+.++++||+||||++.+ .++.
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~~~vViDEah~~~~~~~~~ 202 (414)
T 3eiq_A 126 KVVMAL-GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR--YLSPKYIKMFVLDEADEMLSRGFKD 202 (414)
T ss_dssp HHHHHH-GGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT--SSCSTTCCEEEECSHHHHHHTTTHH
T ss_pred HHHHHH-hcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcccccCcEEEEECHHHhhccCcHH
Confidence 999884 44448888888887654322 1256899999999987777652 23467899999999997643 3333
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
.+..++ .....+.+++++|||+++ ...+...+......+...........+......... .....
T Consensus 203 ~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 268 (414)
T 3eiq_A 203 QIYDIF-------QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER-------EEWKL 268 (414)
T ss_dssp HHHHHH-------TTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS-------STTHH
T ss_pred HHHHHH-------HhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh-------HHhHH
Confidence 333332 234568999999999875 222333222222111111111111111111111110 01111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
..+..+......+++||||++++.++.++..|.+ .+..+..+||++
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----------------------------------~~~~~~~~h~~~ 314 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA----------------------------------RDFTVSAMHGDM 314 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHT----------------------------------TTCCCEEC---C
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHh----------------------------------cCCeEEEecCCC
Confidence 2333344455678999999999999999887732 256789999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++
T Consensus 315 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~ 382 (414)
T 3eiq_A 315 DQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTNRENYIHRIGRGGRFG--RKGVAIN 382 (414)
T ss_dssp HHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSC------CSSTHHHHHHSCCC---------CEEE
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCC------CCCHHHhhhhcCcccCCC--CCceEEE
Confidence 9999999999999999999999999999999999999997 442 335889999999999987 7899999
Q ss_pred EecCCcHHHHHHh
Q 043190 1066 LVHEPKKSFYKKF 1078 (1492)
Q Consensus 1066 l~~~~~~~~~~~~ 1078 (1492)
++++.+...+.++
T Consensus 383 ~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 383 MVTEEDKRTLRDI 395 (414)
T ss_dssp EECSTHHHHHHHH
T ss_pred EEcHHHHHHHHHH
Confidence 9999887766554
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=370.26 Aligned_cols=339 Identities=18% Similarity=0.232 Sum_probs=248.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
++....+.+. ||..|+|+|.++++.++ .++++++++|||||||++|++|++..+... .+.+++|++|+++|+.|++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 106 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 106 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHH
Confidence 4445555554 89999999999999998 678999999999999999999999987643 3568999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
+.+.+.... .+.++...+|+...... ....++|+|+||+++..++.+. ...+.+++++|+||||++.+. .+
T Consensus 107 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~---~~ 180 (400)
T 1s2m_A 107 QVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK--VADLSDCSLFIMDEADKMLSR---DF 180 (400)
T ss_dssp HHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEESHHHHSSH---HH
T ss_pred HHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC--CcccccCCEEEEeCchHhhhh---ch
Confidence 999875444 48889989888764321 2357899999999987776653 234788999999999977542 22
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
...+.. +....+...+++++|||++.. +.+..+++.+. ............+........ ......
T Consensus 181 ~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~k~~ 247 (400)
T 1s2m_A 181 KTIIEQ---ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY--EINLMEELTLKGITQYYAFVE--------ERQKLH 247 (400)
T ss_dssp HHHHHH---HHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE--EESCCSSCBCTTEEEEEEECC--------GGGHHH
T ss_pred HHHHHH---HHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe--EEEeccccccCCceeEEEEec--------hhhHHH
Confidence 222322 223345678999999998752 22333333221 111111111112222111110 001112
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
....+......+++||||++++.++.++..|.+ .+.++..+||+++
T Consensus 248 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~ 293 (400)
T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITD----------------------------------LGYSCYYSHARMK 293 (400)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH----------------------------------HTCCEEEECTTSC
T ss_pred HHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHh----------------------------------cCCCeEEecCCCC
Confidence 223333445667999999999999999887743 2567899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|+++
T Consensus 294 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~l 361 (400)
T 1s2m_A 294 QQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDF------PKTAETYLHRIGRSGRFG--HLGLAINL 361 (400)
T ss_dssp HHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSC------CSSHHHHHHHHCBSSCTT--CCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCC------CCCHHHHHHhcchhcCCC--CCceEEEE
Confidence 999999999999999999999999999999999999997 442 346889999999999988 78999999
Q ss_pred ecCCcHHHHHHhh
Q 043190 1067 VHEPKKSFYKKFL 1079 (1492)
Q Consensus 1067 ~~~~~~~~~~~~l 1079 (1492)
+++.+...+.++.
T Consensus 362 ~~~~~~~~~~~i~ 374 (400)
T 1s2m_A 362 INWNDRFNLYKIE 374 (400)
T ss_dssp ECGGGHHHHHHHH
T ss_pred eccchHHHHHHHH
Confidence 9998876665554
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=370.29 Aligned_cols=326 Identities=17% Similarity=0.189 Sum_probs=240.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+... .+.+++|++|+++|+.|+++.+.+......+
T Consensus 27 g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 27 GFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998 678999999999999999999999887653 3569999999999999999998875544447
Q ss_pred CEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~ 839 (1492)
.++..++|+....... ...++|+|+||+++..++++. ...+.+++++|+||||++.+.. .+.. .+..+.
T Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~~~~--~~~~---~~~~~~ 178 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQL--DMRR---DVQEIF 178 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHTSSH--HHHH---HHHHHH
T ss_pred eEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHhhcc--chHH---HHHHHH
Confidence 8899999987643221 234799999999998877763 2347899999999999885431 1212 222223
Q ss_pred hccCCceEEEEEcCCCCCh-HH-HHHHhcCCcceeEecCCCc--cccCcEEEEeccCCccccccccccChhHHHHHhhcC
Q 043190 840 SQTERAVRFIGLSTALANA-GD-LADWLGVGEIGLFNFKPSV--RPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHS 915 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~~-~~-~~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 915 (1492)
...+...+++++|||+++. .. +..+++... .+. ..... ....+......... .........+....
T Consensus 179 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~ 248 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-EIF-VDDETKLTLHGLQQYYVKLKD--------NEKNRKLFDLLDVL 248 (391)
T ss_dssp HTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-EEE-CCCCCCCCCTTCEEEEEECCG--------GGHHHHHHHHHHHS
T ss_pred hhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-EEE-ecCccccCcccceEEEEEcCc--------hhHHHHHHHHHHhc
Confidence 3345688999999999873 33 334443221 111 11111 11122222211110 00111222233334
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++||||++++.++.++..|.+ .+..+..+||+++.++|..+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~ 294 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVE----------------------------------QNFPAIAIHRGMPQEERLSRYQ 294 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----------------------------------CCCcEEEEeCCCCHHHHHHHHH
Confidence 678999999999999999887743 2567899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++++.+.+...
T Consensus 295 ~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~------p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 295 QFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM------PEDSDTYLHRVARAGRFG--TKGLAITFVSDENDAK 361 (391)
T ss_dssp HHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSC------CSSHHHHHHHHCBCSSSC--CCCEEEEEECSHHHHH
T ss_pred HHhcCCCcEEEECChhhcCCCcccCCEEEE----eCC------CCCHHHHHHhcccccCCC--CceEEEEEEcccchHH
Confidence 999999999999999999999999999997 442 336899999999999987 8999999998775543
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=385.80 Aligned_cols=328 Identities=20% Similarity=0.301 Sum_probs=246.9
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++..|||..|+|+|.++++.++ .++++++++|||+|||++|.+|++.. .++++|++|+++|+.|+++.+..
T Consensus 15 ~~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL~~q~~~~l~~- 87 (523)
T 1oyw_A 15 QVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQA- 87 (523)
T ss_dssp HHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHHH-
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHHHHHHHHHHHH-
Confidence 456677899999999999999998 77899999999999999999998853 57899999999999999988765
Q ss_pred hhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC---CCccH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA---ERGPI 827 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~---~~g~~ 827 (1492)
+ |+.+..++|+...... .....+|+++|||++..... .......++++|||||||++.+ ++.+.
T Consensus 88 ~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~--~~~l~~~~~~~vViDEaH~i~~~g~~fr~~ 161 (523)
T 1oyw_A 88 N----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF--LEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161 (523)
T ss_dssp T----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTH--HHHHTTSCEEEEEESSGGGGCTTSSCCCHH
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHH--HHHHhhCCCCEEEEeCccccCcCCCccHHH
Confidence 2 7888888887664321 12468999999998742211 0111236889999999999853 23344
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
+..+. +++ ... ++.+++++|||+++. .++..+++.....++. ....++ .+...+... .....
T Consensus 162 ~~~l~-~l~---~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-~l~~~v~~~---------~~~~~ 225 (523)
T 1oyw_A 162 YAALG-QLR---QRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYMLMEK---------FKPLD 225 (523)
T ss_dssp HHGGG-GHH---HHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCT-TEEEEEEEC---------SSHHH
T ss_pred HHHHH-HHH---HhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCC-ceEEEEEeC---------CCHHH
Confidence 44332 222 112 357899999999874 6788899876654443 222222 222222111 00011
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.+...+.. .+++++||||+|++.++.++..|.+ .+..+..|||+|
T Consensus 226 ~l~~~l~~-~~~~~~IVf~~sr~~~e~l~~~L~~----------------------------------~g~~~~~~h~~l 270 (523)
T 1oyw_A 226 QLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQS----------------------------------KGISAAAYHAGL 270 (523)
T ss_dssp HHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTS
T ss_pred HHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHH----------------------------------CCCCEEEecCCC
Confidence 22233332 3677999999999999999988743 256799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|.||+|||||.| .+|.|++
T Consensus 271 ~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~------p~s~~~y~Qr~GRaGR~g--~~~~~~l 338 (523)
T 1oyw_A 271 ENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI------PRNIESYYQETGRAGRDG--LPAEAML 338 (523)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSC------CSSHHHHHHHHTTSCTTS--SCEEEEE
T ss_pred CHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECC------CCCHHHHHHHhccccCCC--CCceEEE
Confidence 9999999999999999999999999999999999999998 442 336999999999999987 7899999
Q ss_pred EecCCcHHHHHHhhcC
Q 043190 1066 LVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1066 l~~~~~~~~~~~~l~~ 1081 (1492)
++.+.+....+.++.+
T Consensus 339 ~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 339 FYDPADMAWLRRCLEE 354 (523)
T ss_dssp EECHHHHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHhc
Confidence 9998888777777765
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=363.45 Aligned_cols=324 Identities=20% Similarity=0.285 Sum_probs=242.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||..|+|+|.++++.++++++++++++|||||||++++++++..+...++.+++|++|+++|+.|+++++.+.+... +.
T Consensus 25 g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 103 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK-NL 103 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CC
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 99999999999999998666899999999999999999999998876667899999999999999999998866544 77
Q ss_pred EEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhc
Q 043190 765 EMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 765 ~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~ 841 (1492)
++....|+..... ....+++|+|+||+++...+... ...+.+++++|+||||.+.+ .+...+.. +...
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~~~~~~~~~~-------~~~~ 174 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLNMGFIKDVEK-------ILNA 174 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHTTTTHHHHHH-------HHHT
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhhhhchHHHHHH-------HHHh
Confidence 8888888765432 23347899999999987777652 33478899999999998743 22222222 2223
Q ss_pred cCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCC
Q 043190 842 TERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKP 919 (1492)
Q Consensus 842 ~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 919 (1492)
.+...+++++|||+++. +.+..+++... ..... ....+......... ......+...+. ..+++
T Consensus 175 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~-------~~~~~~l~~~l~--~~~~~ 240 (367)
T 1hv8_A 175 CNKDKRILLFSATMPREILNLAKKYMGDYS--FIKAK---INANIEQSYVEVNE-------NERFEALCRLLK--NKEFY 240 (367)
T ss_dssp SCSSCEEEEECSSCCHHHHHHHHHHCCSEE--EEECC---SSSSSEEEEEECCG-------GGHHHHHHHHHC--STTCC
T ss_pred CCCCceEEEEeeccCHHHHHHHHHHcCCCe--EEEec---CCCCceEEEEEeCh-------HHHHHHHHHHHh--cCCCc
Confidence 45688999999999763 33344443221 11111 11122222111110 000011112222 46778
Q ss_pred eeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc
Q 043190 920 VLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN 999 (1492)
Q Consensus 920 ~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 999 (1492)
+||||++++.++.++..|.+ .+.++..+||+++..+|..+++.|++
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRD----------------------------------IGFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHh----------------------------------cCCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 99999999999999887743 25678999999999999999999999
Q ss_pred CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1000 NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1000 g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
|+.+|||||+++++|+|+|++++||+ |+ .+.+..+|.||+|||||.| ..|.+++++.+.+...+..+
T Consensus 287 ~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~------~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 287 KKIRILIATDVMSRGIDVNDLNCVIN----YH------LPQNPESYMHRIGRTGRAG--KKGKAISIINRREYKKLRYI 353 (367)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEE----SS------CCSCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHHHH
T ss_pred CCCeEEEECChhhcCCCcccCCEEEE----ec------CCCCHHHhhhcccccccCC--CccEEEEEEcHHHHHHHHHH
Confidence 99999999999999999999999997 33 2346899999999999987 78999999998887665544
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=350.09 Aligned_cols=314 Identities=19% Similarity=0.272 Sum_probs=234.2
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||..|+|+|.++++.++ +++++++++|||+|||+++++++++. +.+++|++|+++|+.|+++.+.+. ....+
T Consensus 12 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-~~~~~ 84 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDI-GRYMD 84 (337)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHH-TTTSC
T ss_pred cCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHH-hhhcC
Confidence 399999999999999998 67899999999999999999999875 689999999999999999999874 34447
Q ss_pred CEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhh
Q 043190 764 KEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~ 840 (1492)
.++..++|+..... ....+++|+|+||+++..++.+. ...+.+++++|+||||++.+ .+...+..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~------- 155 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVIIDEADLMFEMGFIDDIKIILA------- 155 (337)
T ss_dssp CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH-------
T ss_pred CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC--CcchhhCcEEEEEChHHhhccccHHHHHHHHh-------
Confidence 88999988766432 23456899999999998776652 23467899999999998743 33333333322
Q ss_pred ccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCC
Q 043190 841 QTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTK 918 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 918 (1492)
..+...+++++|||+++. +.+..+++... . .. .......+...+..... ........+ ....++
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~ 221 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFITNYE-E-IE--ACIGLANVEHKFVHVKD---------DWRSKVQAL-RENKDK 221 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSCSCE-E-EE--CSGGGGGEEEEEEECSS---------SSHHHHHHH-HTCCCS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcCCce-e-ee--cccccCCceEEEEEeCh---------HHHHHHHHH-HhCCCC
Confidence 344578899999999763 33455554321 1 11 11111222222221111 111122222 335678
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA 998 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 998 (1492)
++||||++++.++.++..| ..+..+||+++..+|..+++.|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l--------------------------------------~~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLF--------------------------------------DNAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp SEEEECSCHHHHHHHHTTC--------------------------------------TTEEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCHHHHHHHHHHh--------------------------------------hhhhhhcCCCCHHHHHHHHHHHH
Confidence 9999999999998877544 14788999999999999999999
Q ss_pred cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 999 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 999 ~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
+|+.+|||||+++++|+|+|++++||+ |++ +.+..+|+||+|||||.| ..|.|++++. .+....+++
T Consensus 264 ~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~------~~s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 264 EGEYDMLITTDVASRGLDIPLVEKVIN----FDA------PQDLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp TTSCSEEEECHHHHTTCCCCCBSEEEE----SSC------CSSHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHHHH
T ss_pred cCCCcEEEEcCccccCCCccCCCEEEE----ecC------CCCHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHHHH
Confidence 999999999999999999999999997 443 336899999999999987 7899999998 665555443
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=373.96 Aligned_cols=339 Identities=17% Similarity=0.230 Sum_probs=138.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
++....+.+. ||..|+|+|.++++.++ .++++++++|||+|||++|.+|++..+... .+++++|++|+++|+.|++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~ 106 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 106 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHH
Confidence 3444444444 99999999999999998 678999999999999999999999987653 3679999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
+.+.+.+... +.++..++|+..... ....+++|+|+||+++...+.+. ...+.+++++|+||||++.+ .+...+
T Consensus 107 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~vIiDEah~~~~~~~~~~~ 183 (394)
T 1fuu_A 107 KVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLSSGFKEQI 183 (394)
T ss_dssp HHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHhccC-CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhC--CcchhhCcEEEEEChHHhhCCCcHHHH
Confidence 9998755443 888999998876432 22336899999999987776652 33467899999999998743 343333
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
..++. ..+...+++++|||+++. +....+++.+. .+........+..+......... ......
T Consensus 184 ~~~~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 248 (394)
T 1fuu_A 184 YQIFT-------LLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKDELTLEGIKQFYVNVEE-------EEYKYE 248 (394)
T ss_dssp HHHHH-------HSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC------------------------------
T ss_pred HHHHH-------hCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCccccCCCceEEEEEcCc-------hhhHHH
Confidence 33332 234678999999999863 23334443221 11111111111111111100000 000111
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
....+......+++||||++++.++.++..|.+ .+..+..+||+++
T Consensus 249 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~ 294 (394)
T 1fuu_A 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN----------------------------------DKFTVSAIYSDLP 294 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHH----------------------------------cCCeEEEeeCCCC
Confidence 122222334567999999999999988877633 1456889999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|+++
T Consensus 295 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~------p~s~~~~~Qr~GR~~R~g--~~g~~~~~ 362 (394)
T 1fuu_A 295 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL------PANKENYIHRIGRGGRFG--RKGVAINF 362 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCC------CCCHHHHHHHcCcccCCC--CCceEEEE
Confidence 999999999999999999999999999999999999997 432 335789999999999987 78999999
Q ss_pred ecCCcHHHHHHh
Q 043190 1067 VHEPKKSFYKKF 1078 (1492)
Q Consensus 1067 ~~~~~~~~~~~~ 1078 (1492)
+.+.+...+..+
T Consensus 363 ~~~~~~~~~~~l 374 (394)
T 1fuu_A 363 VTNEDVGAMREL 374 (394)
T ss_dssp ------------
T ss_pred EchhHHHHHHHH
Confidence 988776554433
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=358.59 Aligned_cols=327 Identities=15% Similarity=0.150 Sum_probs=229.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.++..++| .|+|+|.++++.++ .+++++++||||||||++|+++++.... ++++++|++|+++|+.|+++.+.+ +
T Consensus 13 ~l~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~-~ 87 (414)
T 3oiy_A 13 FFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQK-L 87 (414)
T ss_dssp HHHHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHH-H
T ss_pred HHHHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHH-H
Confidence 34555688 59999999999998 6789999999999999999999888764 478999999999999999999988 4
Q ss_pred hhccCCEEEEEcCCCCcchh-----c--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC----------
Q 043190 759 VSQLGKEMVEMTGDYTPDLM-----A--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG---------- 821 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~-----~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~---------- 821 (1492)
.. .|+++..++|+.....+ . ...++|+|+||+++...+.. ..+.++++||+||||++.
T Consensus 88 ~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 88 AD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp CC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred cc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchhhhHH
Confidence 44 58899999998875221 1 12489999999998776654 335689999999999764
Q ss_pred --CCCccH-HHHHHHHHHH--hhhccC--CceEEEEEcCC-CCCh---HHHHHHhcCCcceeEecCCCccccCcEEEEec
Q 043190 822 --AERGPI-LEVIVSRMRY--ISSQTE--RAVRFIGLSTA-LANA---GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG 890 (1492)
Q Consensus 822 --~~~g~~-~~~i~~~l~~--~~~~~~--~~~~ii~lSAT-l~~~---~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~ 890 (1492)
..+.+. +..++..++. .....+ ...+++++||| .+.. .....+++..... .......+...+..
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRIS 237 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEES
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeec
Confidence 223333 4444444420 001111 57899999999 4432 2233444322211 11111122222211
Q ss_pred cCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHH
Q 043190 891 YPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNL 970 (1492)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 970 (1492)
. .....+...+.. .++++||||++++.|+.++..|..
T Consensus 238 ~----------~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~------------------------------- 274 (414)
T 3oiy_A 238 S----------RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR------------------------------- 274 (414)
T ss_dssp S----------CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH-------------------------------
T ss_pred c----------CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence 1 011122333333 348999999999999999987743
Q ss_pred HHHhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecceeeeCccCccccCCHHH
Q 043190 971 RQTLQFGIG-LHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTEYYDGKTKRYVDFPITD 1044 (1492)
Q Consensus 971 ~~~~~~~v~-~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~~~~~~~~~~~~~~~~~ 1044 (1492)
.+..+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ +++||+ |+.+. ..+..+
T Consensus 275 ---~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~~p~----~~~~~~ 337 (414)
T 3oiy_A 275 ---FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPS----GPDVYT 337 (414)
T ss_dssp ---TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ESCCT----TTCHHH
T ss_pred ---cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE----ECCCC----CCCHHH
Confidence 256677 88884 444 99999999999999 999999999999 999997 55331 046899
Q ss_pred HHHhhcccCCCCCC--CceEEEEEecCCcH-HHHHHhhc
Q 043190 1045 ILQMMGRAGRPQYD--QHGKAVILVHEPKK-SFYKKFLY 1080 (1492)
Q Consensus 1045 ~~Qr~GRagR~g~~--~~G~~i~l~~~~~~-~~~~~~l~ 1080 (1492)
|+||+|||||.|.+ ..|.+++++.+... ..+++++.
T Consensus 338 y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 338 YIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp HHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 99999999999866 58999999943221 33444455
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=359.01 Aligned_cols=343 Identities=19% Similarity=0.272 Sum_probs=187.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|+|.++++.++ .++++++++|||||||++|.+|+++.+...+ ++++||++|+++|+.|+++.+.+.+... +.
T Consensus 7 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 84 (556)
T 4a2p_A 7 KARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GY 84 (556)
T ss_dssp -CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TC
T ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-Cc
Confidence 59999999999998 6789999999999999999999999887655 7899999999999999999999866555 88
Q ss_pred EEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHH-hhh
Q 043190 765 EMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY-ISS 840 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~-~~~ 840 (1492)
++..++|+...... ...+++|+|+||+++...+.... ...+.++++||+||||++.+. ++ +..++.++.. ...
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~-~~-~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGN-HP-YNVLMTRYLEQKFN 161 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS-CCCSTTCSEEEEETGGGCSTT-SH-HHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc-ccccccCCEEEEECCcccCCc-ch-HHHHHHHHHHhhhc
Confidence 99999998754321 22468999999999987776522 125789999999999998643 33 5554433321 111
Q ss_pred ccCCceEEEEEcCCCCC--hHHHHHH----------hcCCcceeEecCCC--------ccccCcEEEEec-cC-------
Q 043190 841 QTERAVRFIGLSTALAN--AGDLADW----------LGVGEIGLFNFKPS--------VRPVPLEVHIQG-YP------- 892 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~--~~~~~~~----------l~~~~~~~~~~~~~--------~r~~~l~~~~~~-~~------- 892 (1492)
...+..++++||||++. ..++.+| ++.... ...... .++......... ..
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI--STVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEE--ECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEe--cchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 12456899999999943 3333333 332110 000000 000000000000 00
Q ss_pred ------------------------Cccccc-----cc-------------------------------------------
Q 043190 893 ------------------------GKFYCP-----RM------------------------------------------- 900 (1492)
Q Consensus 893 ------------------------~~~~~~-----~~------------------------------------------- 900 (1492)
...+.. ..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 00
Q ss_pred ---------------------------------------------------cccChhHHHHHhhc---CCCCCeeEEecC
Q 043190 901 ---------------------------------------------------NSMNKPAYAAICTH---SPTKPVLIFVSS 926 (1492)
Q Consensus 901 ---------------------------------------------------~~~~~~~~~~l~~~---~~~~~~LIF~~s 926 (1492)
......+...+... .+++++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 00000011111111 567899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCceEE
Q 043190 927 RRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NKIQVL 1005 (1492)
Q Consensus 927 ~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~~vL 1005 (1492)
+..+..++..|.+..... .. .. ....+.+...+||+|++++|..+++.|++ |+++||
T Consensus 400 ~~~~~~l~~~L~~~~~~~-----~~--~~---------------~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 457 (556)
T 4a2p_A 400 RALVSALKKCMEENPILN-----YI--KP---------------GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLL 457 (556)
T ss_dssp HHHHHHHHHHHTTCSGGG-----SC--CE---------------EC------------------------------CCEE
T ss_pred HHHHHHHHHHHHhCCCcc-----ee--ee---------------eEEEccCCcccccccCHHHHHHHHHHhcccCceEEE
Confidence 999999998774320000 00 00 01124556678999999999999999999 999999
Q ss_pred EeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1006 vaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|||+++++|+|+|++++||+ ||++ .++.+|+||+|| ||. ..|.+++++.+.+..
T Consensus 458 vaT~~~~~GiDip~v~~VI~----~d~p------~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 458 IATSVADEGIDIVQCNLVVL----YEYS------GNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp EEEC-----------CEEEE----ETCC------SCHHHHHHC------------CCEEEEESCHHHH
T ss_pred EEcCchhcCCCchhCCEEEE----eCCC------CCHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99999999999999999998 6643 368999999999 996 589999999876643
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=350.47 Aligned_cols=345 Identities=18% Similarity=0.214 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|+|.++++.++ .++++++++|||||||++|.+|+++.+...+ ++++||++|+++|+.|+++.+.+.+... +.
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GY 81 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TC
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-Cc
Confidence 49999999999998 6889999999999999999999999887655 7899999999999999999999866555 88
Q ss_pred EEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHh--h
Q 043190 765 EMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI--S 839 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~--~ 839 (1492)
++..++|+...... ...+++|+|+||+++...+.... ...+.++++||+||||++.+.. .+..++.++... .
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhhc
Confidence 99999998754432 22368999999999987776522 1257889999999999986532 255554433221 1
Q ss_pred hccCCceEEEEEcCCCCCh---------H---HHHHHhcCCcceeEe-----c-CCCccccCcEEEEeccC---------
Q 043190 840 SQTERAVRFIGLSTALANA---------G---DLADWLGVGEIGLFN-----F-KPSVRPVPLEVHIQGYP--------- 892 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~~---------~---~~~~~l~~~~~~~~~-----~-~~~~r~~~l~~~~~~~~--------- 892 (1492)
.......+++++|||+++. + .+..+++........ + ....++...........
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 1123568999999999652 1 233444432110000 0 00001110000000000
Q ss_pred ------------------------Cccccc-----ccc------------------------------------------
Q 043190 893 ------------------------GKFYCP-----RMN------------------------------------------ 901 (1492)
Q Consensus 893 ------------------------~~~~~~-----~~~------------------------------------------ 901 (1492)
...+.. ...
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000000 000
Q ss_pred -------------------------------------------------ccCh---hHHHHHh---hcCCCCCeeEEecC
Q 043190 902 -------------------------------------------------SMNK---PAYAAIC---THSPTKPVLIFVSS 926 (1492)
Q Consensus 902 -------------------------------------------------~~~~---~~~~~l~---~~~~~~~~LIF~~s 926 (1492)
.... .+...+. ...+++++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0000 0011111 12456899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCceEE
Q 043190 927 RRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NKIQVL 1005 (1492)
Q Consensus 927 ~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~~vL 1005 (1492)
+..++.++..|............ ...+.+...+||+|++++|..+++.|++ |+++||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 456 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPG----------------------ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNIL 456 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEE----------------------ECCC--------------------------CCSEE
T ss_pred HHHHHHHHHHHhhCcCcCceeee----------------------EEEecCCcccccccCHHHHHHHHHHHhcCCCeeEE
Confidence 99999999888653110000000 1123456677899999999999999999 999999
Q ss_pred EeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1006 vaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|||+++++|+|+|++++||+ ||.+ .++.+|+||+|| ||. ..|.+++++.+.+..
T Consensus 457 vaT~~~~~GlDlp~v~~VI~----~d~p------~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 457 IATSVADEGIDIAECNLVIL----YEYV------GNVIKMIQTRGR-GRA---RDSKCFLLTSSADVI 510 (555)
T ss_dssp EECCCTTCCEETTSCSEEEE----ESCC------SSCCCEECSSCC-CTT---TSCEEEEEESCHHHH
T ss_pred EEcchhhcCCccccCCEEEE----eCCC------CCHHHHHHhcCc-CcC---CCceEEEEEcCCCHH
Confidence 99999999999999999998 6643 357789999999 885 689999999876654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=352.85 Aligned_cols=319 Identities=18% Similarity=0.279 Sum_probs=217.1
Q ss_pred cCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 684 YNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
++| .|+++|.++++.++.. ..+++++||||||||++|++|++..+.. +.+++|++||++||.|+++.+.+.+
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 488 7999999999988732 2599999999999999999999998765 7899999999999999999999877
Q ss_pred hhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVI 831 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i 831 (1492)
... |+++..++|+.....+. ...++|+|+||+.+.. ...+.+++++|+||+|.++.....
T Consensus 442 ~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~qr~----- 508 (780)
T 1gm5_A 442 SKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQRE----- 508 (780)
T ss_dssp TCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC-----C-----
T ss_pred hhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHHHH-----
Confidence 654 89999999988654321 2358999999986632 234789999999999987532110
Q ss_pred HHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 832 VSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 832 ~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
.........++++||||+.....-..+++.....+....+..+ .++...+.. .......+..+
T Consensus 509 ------~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~----------~~~~~~l~~~i 571 (780)
T 1gm5_A 509 ------ALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGR-KEVQTMLVP----------MDRVNEVYEFV 571 (780)
T ss_dssp ------CCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSC-CCCEECCCC----------SSTHHHHHHHH
T ss_pred ------HHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCC-cceEEEEec----------cchHHHHHHHH
Confidence 0111234688999999975432222333333322222111111 122211110 00111233333
Q ss_pred h-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH-H-hccceEeecCCCCHH
Q 043190 912 C-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ-T-LQFGIGLHHAGLNDK 988 (1492)
Q Consensus 912 ~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~v~~~h~~l~~~ 988 (1492)
. ....+++++|||++...++.+...- .+++... |.. . .+.++..+||+|+++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~-----------------a~~l~~~--------L~~~~~~~~~v~~lHG~m~~~ 626 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKS-----------------AVEMYEY--------LSKEVFPEFKLGLMHGRLSQE 626 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CH-----------------HHHHHHS--------GGGSCC---CBCCCCSSSCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHH-----------------HHHHHHH--------HHhhhcCCCcEEEEeCCCCHH
Confidence 3 2356789999999876543221000 0011111 111 1 146799999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+++|||||+++++|+|+|++++||. |+++. ++.+.+.||+||+||.| ..|.|++++.
T Consensus 627 eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r-----~~l~~l~Qr~GRaGR~g--~~g~~ill~~ 695 (780)
T 1gm5_A 627 EKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRGG--QEAYCFLVVG 695 (780)
T ss_dssp CSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCSS--TTCEEECCCC
T ss_pred HHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC-----CCHHHHHHHhcccCcCC--CCCEEEEEEC
Confidence 9999999999999999999999999999999999997 44331 25788999999999987 8899999987
Q ss_pred CCc
Q 043190 1069 EPK 1071 (1492)
Q Consensus 1069 ~~~ 1071 (1492)
+..
T Consensus 696 ~~~ 698 (780)
T 1gm5_A 696 DVG 698 (780)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=356.68 Aligned_cols=349 Identities=16% Similarity=0.181 Sum_probs=195.4
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
+|+..|+|+|.++++.++ .++|+++++|||||||++|.+++++.+...+ +++++|++|+++|+.|+++.+.+.+..
T Consensus 9 ~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred cCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 488899999999999998 6899999999999999999999998776532 279999999999999999999886644
Q ss_pred ccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~ 837 (1492)
.|+++..++|+..... ....+++|+|+||+++...+..... ..+.++++|||||||++.... .+..++.++..
T Consensus 88 -~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~-~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 -HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI-PSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLD 163 (696)
T ss_dssp -TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS-CCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred -CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc-cccccccEEEEeCCCcccCcc--cHHHHHHHHHH
Confidence 3889999999865432 1124689999999999777765221 147889999999999986432 34444433321
Q ss_pred --hhhccCCceEEEEEcCCCCC---------hHHHHHHhcCCcceeEecCCC---------ccccCcEEEEec-------
Q 043190 838 --ISSQTERAVRFIGLSTALAN---------AGDLADWLGVGEIGLFNFKPS---------VRPVPLEVHIQG------- 890 (1492)
Q Consensus 838 --~~~~~~~~~~ii~lSATl~~---------~~~~~~~l~~~~~~~~~~~~~---------~r~~~l~~~~~~------- 890 (1492)
+.......+++++||||+.+ .+.+...+.......+..... ..|.........
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 12223467899999999873 122222211100000000000 000000000000
Q ss_pred ----------------cCC----------cc-----c-------------------------------------------
Q 043190 891 ----------------YPG----------KF-----Y------------------------------------------- 896 (1492)
Q Consensus 891 ----------------~~~----------~~-----~------------------------------------------- 896 (1492)
+.. .. +
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 000 00 0
Q ss_pred ---------------------------cc------------------------cccccChhHHHHHhhc---CCCCCeeE
Q 043190 897 ---------------------------CP------------------------RMNSMNKPAYAAICTH---SPTKPVLI 922 (1492)
Q Consensus 897 ---------------------------~~------------------------~~~~~~~~~~~~l~~~---~~~~~~LI 922 (1492)
.. ........+...+... .+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00 0000000011112221 35689999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CC
Q 043190 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NK 1001 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~ 1001 (1492)
||+++..++.++..|......... .. ....+.+...+||+|++++|..+++.|++ |+
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~-------~~---------------~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~ 461 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFL-------KP---------------GILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSC-------CE---------------EC-----------------------------C
T ss_pred EeCcHHHHHHHHHHHHhCCCcccc-------ce---------------eEEEccCCCccccCCCHHHHHHHHHHHHhcCC
Confidence 999999999999888552100000 00 00112334444889999999999999998 99
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++|||||+++++|||+|++++||+ ||.+ .+..+|+||+|| ||. ..|.|+++++..+..
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~----~d~p------~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVIL----YEYV------GNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEE----ESCC--------CCCC-------------CCCEEEEEESCHHHH
T ss_pred ccEEEEechhhcCCcCccCCEEEE----eCCC------CCHHHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 999999999999999999999998 6543 246689999999 996 589999999876653
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=355.45 Aligned_cols=349 Identities=19% Similarity=0.255 Sum_probs=196.6
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
.+|+..|+|+|.++++.++ .++++++++|||||||++|.+|++..+...+ ++++||++|+++|+.|+++.|.+.+.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3478889999999999998 6789999999999999999999999887654 78999999999999999999998766
Q ss_pred hccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMR 836 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~ 836 (1492)
.. ++++..++|+..... ....+++|+|+||+++...++... ...+.++++|||||||++.... .+..++.++.
T Consensus 322 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYL 397 (797)
T ss_dssp GG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS-CCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHH
T ss_pred cC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc-ccccccCCEEEEECccccCCCc--cHHHHHHHHH
Confidence 55 899999999875432 223478999999999987776522 1257889999999999986532 3555554443
Q ss_pred Hh-hhccCCceEEEEEcCCCCC------------hHHHHHHhcCCcceeEecC------CCccccCcEEEEec-------
Q 043190 837 YI-SSQTERAVRFIGLSTALAN------------AGDLADWLGVGEIGLFNFK------PSVRPVPLEVHIQG------- 890 (1492)
Q Consensus 837 ~~-~~~~~~~~~ii~lSATl~~------------~~~~~~~l~~~~~~~~~~~------~~~r~~~l~~~~~~------- 890 (1492)
.. ........++++||||++. ...+...++.......... ...++.........
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 22 1222456899999999953 1223333433211000000 00001000000000
Q ss_pred -------------------------cCCccccc-----cccc--------------------------------------
Q 043190 891 -------------------------YPGKFYCP-----RMNS-------------------------------------- 902 (1492)
Q Consensus 891 -------------------------~~~~~~~~-----~~~~-------------------------------------- 902 (1492)
.+...+.. ....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00000000 0000
Q ss_pred -----------------------------------------------------cCh---hHHHHHhh---cCCCCCeeEE
Q 043190 903 -----------------------------------------------------MNK---PAYAAICT---HSPTKPVLIF 923 (1492)
Q Consensus 903 -----------------------------------------------------~~~---~~~~~l~~---~~~~~~~LIF 923 (1492)
... .+...+.. ..+++++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 000 01111111 2567899999
Q ss_pred ecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCc
Q 043190 924 VSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NKI 1002 (1492)
Q Consensus 924 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~ 1002 (1492)
|++++.+..++..|.+..... .+.. ....+.+...+||+|++.+|..+++.|++ |++
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~-----~~~~-----------------~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~ 695 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILN-----YIKP-----------------GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTC-----SCCC-----------------EEC----------------------------CC
T ss_pred ECcHHHHHHHHHHHHhCcccc-----cccc-----------------eEEEecCCcccCCCCCHHHHHHHHHHhhccCCc
Confidence 999999999998875420000 0000 01124566778999999999999999999 999
Q ss_pred eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1003 QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1003 ~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+|||||+++++|||+|++++||+ ||.+ .++..|+||+|| ||. ..|.|++|++..+.
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~----yd~p------~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVL----YEYS------GNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (797)
T ss_dssp SEEEEECC-------CCCSEEEE----ESCC------SCHHHHHTC-----------CCCEEEEECCHHH
T ss_pred eEEEEcCchhcCCCchhCCEEEE----eCCC------CCHHHHHHhcCC-CCC---CCceEEEEEeCCcH
Confidence 99999999999999999999998 6643 368999999999 996 68999999987654
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=365.08 Aligned_cols=280 Identities=15% Similarity=0.128 Sum_probs=195.4
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+...+||. | |+|.++++.++ .++|++++||||||||+ +.+|++..+.. .+.+++|++||++||.|+++.+.+.+.
T Consensus 50 ~~~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 50 FRKCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHTTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 33445999 9 99999999998 78999999999999998 78888876654 478999999999999999999988554
Q ss_pred hccCC----EEEEEcCCCCcch-----hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 760 SQLGK----EMVEMTGDYTPDL-----MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 760 ~~~g~----~v~~~~g~~~~~~-----~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
.. ++ ++..++|+..... ..+.+++|+|+||+++..++.+ +++++++||||||++.+ ++..++.
T Consensus 125 ~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~ 196 (1054)
T 1gku_B 125 KA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDK 196 (1054)
T ss_dssp TT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHH
T ss_pred hc-CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHH
Confidence 44 77 8999999876543 2223499999999998877664 66899999999998865 7888888
Q ss_pred HHHHHHHhh----hccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCC-ccccCcEEEEeccCCccccccccccCh
Q 043190 831 IVSRMRYIS----SQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPS-VRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 831 i~~~l~~~~----~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
++.++.... .......+++++|||+++..++..++...... +..... .....+...... .....
T Consensus 197 i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~----------~~k~~ 265 (1054)
T 1gku_B 197 LLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVN----------DESIS 265 (1054)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEES----------CCCTT
T ss_pred HHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEec----------hhHHH
Confidence 887663211 11234567899999987753222222111100 000111 111112222110 01111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.+...+... ++++||||++++.|+.++..|.+ . +.+..+||++
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~----------------------------------~-~~v~~lhg~~ 308 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKN----------------------------------K-FRIGIVTATK 308 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTT----------------------------------S-SCEEECTTSS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhh----------------------------------c-cCeeEEeccH
Confidence 122233222 57899999999999988866621 1 5689999998
Q ss_pred CHHHHHHHHHHHhcCCceEEEe----ccccccccCCCCc-EEEEe
Q 043190 986 NDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPAH-LVIIK 1025 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~~-~~VI~ 1025 (1492)
..+++.|++|+++|||| |+++++|+|+|++ ++||+
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 37889999999999999 9999999999995 99997
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-32 Score=353.55 Aligned_cols=339 Identities=17% Similarity=0.203 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC----CceEEEEcccHHHHHHH-HHHHHHHhhhcc
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVRER-MNDWKDRLVSQL 762 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~----~~~~l~i~P~r~La~q~-~~~~~~~~~~~~ 762 (1492)
.|+|+|.++++.++ .++++++++|||+|||++|.+|++..+...+ ++++||++|+++|+.|+ ++++.+.+..
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 49999999999998 5889999999999999999999998766532 38999999999999999 8988886543
Q ss_pred CCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCC--CCccHHHHHHH
Q 043190 763 GKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGA--ERGPILEVIVS 833 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~--~~g~~~~~i~~ 833 (1492)
+.++..++|+..... .....++|+|+||++|...+... .....+.++++|||||||++.. .....+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 478999999876442 22357899999999997766321 1233578899999999998742 12222222211
Q ss_pred -HHHHhh-----hccCCceEEEEEcCCCCCh------------HHHHHHhcCCcceeEecC-----C-CccccCcEEEEe
Q 043190 834 -RMRYIS-----SQTERAVRFIGLSTALANA------------GDLADWLGVGEIGLFNFK-----P-SVRPVPLEVHIQ 889 (1492)
Q Consensus 834 -~l~~~~-----~~~~~~~~ii~lSATl~~~------------~~~~~~l~~~~~~~~~~~-----~-~~r~~~l~~~~~ 889 (1492)
+++... ....+.+++++||||+.+. .++..+++.......... . ..+|........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 111110 0011467999999999862 223344443111000000 0 000000000000
Q ss_pred cc-----------------------CCcccc-----cc------------------------------------------
Q 043190 890 GY-----------------------PGKFYC-----PR------------------------------------------ 899 (1492)
Q Consensus 890 ~~-----------------------~~~~~~-----~~------------------------------------------ 899 (1492)
.. +...+. ..
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 00
Q ss_pred -------------------------------------------------------ccccChhHHHHHhh---cCC-CCCe
Q 043190 900 -------------------------------------------------------MNSMNKPAYAAICT---HSP-TKPV 920 (1492)
Q Consensus 900 -------------------------------------------------------~~~~~~~~~~~l~~---~~~-~~~~ 920 (1492)
.......+...+.. ..+ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00000011111111 123 7899
Q ss_pred eEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC--------CCHHHHHH
Q 043190 921 LIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG--------LNDKDRSL 992 (1492)
Q Consensus 921 LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~--------l~~~~R~~ 992 (1492)
||||++++.++.++..|.+... + ...+..+..+||+ |++.+|..
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~-------l---------------------~~~g~~~~~lhg~~~~~~~~~~~~~eR~~ 455 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEK-------F---------------------AEVGVKAHHLIGAGHSSEFKPMTQNEQKE 455 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCS-------C---------------------C-----CEECCCSCCCTTCCCCCHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHhCcc-------c---------------------cccCcceEEEECCCCccCCCCCCHHHHHH
Confidence 9999999999999988743200 0 0124678899999 99999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+++.|++|+++|||||+++++|||+|++++||+ ||.+ .+..+|+||+|||||.| +.+++++....
T Consensus 456 ~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p------~s~~~~~Qr~GRArr~g----~~~~l~~~~~~ 520 (699)
T 4gl2_A 456 VISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLV------TNEIAMVQARGRARADE----STYVLVAHSGS 520 (699)
T ss_dssp HHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCC------CCHHHHHHHHTTSCSSS----CEEEEEEESSS
T ss_pred HHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCC------CCHHHHHHHcCCCCCCC----ceEEEEEeCCc
Confidence 999999999999999999999999999999997 6643 36899999999988743 45555554443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=349.78 Aligned_cols=315 Identities=19% Similarity=0.284 Sum_probs=229.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhc---CCC--cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYH---TDN--NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~---~~~--~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.+...|+|+ ++|+|.++++.++. +++ +++++||||+|||++|+.+++..+.. +.+++|++||++||.|.+++
T Consensus 595 ~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--g~~vlvlvPt~~La~Q~~~~ 671 (1151)
T 2eyq_A 595 LFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLVPTTLLAQQHYDN 671 (1151)
T ss_dssp HHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHH
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--CCeEEEEechHHHHHHHHHH
Confidence 344556887 79999999999874 244 99999999999999999999887664 67999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCcc
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~ 826 (1492)
+.+.+... ++++..++|....... ....++|+|+||+.+. + ...+++++++||||+|+++ .
T Consensus 672 ~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~---~~~~~~l~lvIiDEaH~~g----~ 739 (1151)
T 2eyq_A 672 FRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S---DVKFKDLGLLIVDEEHRFG----V 739 (1151)
T ss_dssp HHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S---CCCCSSEEEEEEESGGGSC----H
T ss_pred HHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C---CccccccceEEEechHhcC----h
Confidence 99888765 7889999887654321 1235899999997552 2 2347899999999999863 3
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
.....+..+ ..+.++++||||+.....-..+.+.....++... .....++...+..... ..
T Consensus 740 ~~~~~l~~l-------~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~-~~~r~~i~~~~~~~~~-----------~~ 800 (1151)
T 2eyq_A 740 RHKERIKAM-------RANVDILTLTATPIPRTLNMAMSGMRDLSIIATP-PARRLAVKTFVREYDS-----------MV 800 (1151)
T ss_dssp HHHHHHHHH-------HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC-CCBCBCEEEEEEECCH-----------HH
T ss_pred HHHHHHHHh-------cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC-CCCccccEEEEecCCH-----------HH
Confidence 333333332 2468999999998543222222333322222211 1222233322221110 11
Q ss_pred HH-HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 907 AY-AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 907 ~~-~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.. ..+.....+++++|||++++.++.++..|.+.. .+.++..+||+|
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~--------------------------------p~~~v~~lhg~~ 848 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELV--------------------------------PEARIAIGHGQM 848 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC--------------------------------TTSCEEECCSSC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC--------------------------------CCCeEEEEeCCC
Confidence 11 222334567899999999999999998875432 146799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
+..+|..+++.|++|+++|||||+++++|+|+|++++||. +++ ..++..+|.||+||+||.| ..|.|++
T Consensus 849 ~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~-----~~~~l~~l~Qr~GRvgR~g--~~g~~~l 917 (1151)
T 2eyq_A 849 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERA-----DHFGLAQLHQLRGRVGRSH--HQAYAWL 917 (1151)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTT-----TSSCHHHHHHHHTTCCBTT--BCEEEEE
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE----eCC-----CCCCHHHHHHHHhccCcCC--CceEEEE
Confidence 9999999999999999999999999999999999998885 221 1347889999999999987 7899999
Q ss_pred EecCC
Q 043190 1066 LVHEP 1070 (1492)
Q Consensus 1066 l~~~~ 1070 (1492)
++.+.
T Consensus 918 l~~~~ 922 (1151)
T 2eyq_A 918 LTPHP 922 (1151)
T ss_dssp EECCG
T ss_pred EECCc
Confidence 98764
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=351.46 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=198.9
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+...+|| .|+|+|.++++.++ .++|++++||||||||++++.+++..+. .+.+++|++||++||.|+++++.+ +.
T Consensus 71 ~~~~~gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~~-l~ 145 (1104)
T 4ddu_A 71 FKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQK-LA 145 (1104)
T ss_dssp HHHHSSS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHT-TS
T ss_pred HHHhcCC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHHH-hh
Confidence 3344588 49999999999998 6889999999999999999888888774 478999999999999999999988 65
Q ss_pred hccCCEEEEEcCCCCcchh-----c--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC---------
Q 043190 760 SQLGKEMVEMTGDYTPDLM-----A--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--------- 823 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~-----~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--------- 823 (1492)
..++++..++|+.....+ . ...++|+|+||+++..++.. ..++++++|||||||++...
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccchhhhH
Confidence 448899999998765221 1 12489999999998766653 33678999999999976531
Q ss_pred ---CccH-HHHHHHHHHH--hhhccC--CceEEEEEcCCC-CCh---HHHHHHhcCCcceeEecCCCccccCcEEEEecc
Q 043190 824 ---RGPI-LEVIVSRMRY--ISSQTE--RAVRFIGLSTAL-ANA---GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGY 891 (1492)
Q Consensus 824 ---~g~~-~~~i~~~l~~--~~~~~~--~~~~ii~lSATl-~~~---~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~ 891 (1492)
+... +..++..++. .....+ ...|++++|||+ +.. ..+..+++..... ....+..+...+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec
Confidence 1112 3333333320 000111 578999999994 431 2233444322110 011111122222111
Q ss_pred CCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHH
Q 043190 892 PGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLR 971 (1492)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 971 (1492)
.....+...+.. .++++||||++++.++.++..|..
T Consensus 296 ----------~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~-------------------------------- 331 (1104)
T 4ddu_A 296 ----------RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR-------------------------------- 331 (1104)
T ss_dssp ----------CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHH--------------------------------
T ss_pred ----------CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHh--------------------------------
Confidence 011122333333 348999999999999999987743
Q ss_pred HHhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecceeeeCcc
Q 043190 972 QTLQFGIG-LHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTEYYDGKT 1034 (1492)
Q Consensus 972 ~~~~~~v~-~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~~~~~~~ 1034 (1492)
.+..+. .+|| +|+. ++.|++|+++|||| |+++++|+|+|+ +++||+ ||.+.
T Consensus 332 --~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~----~d~P~ 388 (1104)
T 4ddu_A 332 --FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPS 388 (1104)
T ss_dssp --TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE----ESCCE
T ss_pred --CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE----ECCCC
Confidence 256777 8898 3555 99999999999999 999999999999 999998 66554
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=352.54 Aligned_cols=347 Identities=19% Similarity=0.262 Sum_probs=196.7
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
+|+..|+|+|.++++.++ .++++++++|||||||++|.+|++..+...+ ++++||++|+++|+.|+++++.+.+..
T Consensus 244 ~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 367789999999999998 6899999999999999999999999887654 789999999999999999999986655
Q ss_pred ccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~ 837 (1492)
. ++++..++|+..... ....+++|+|+||+++...+.... ...+.++++|||||||++.... .+..++.++..
T Consensus 323 ~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~-~~~l~~~~liViDEaH~~~~~~--~~~~i~~~~~~ 398 (936)
T 4a2w_A 323 Q-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (936)
T ss_dssp T-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS-CCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred c-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc-cccccCCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 4 889999999875432 222468999999999987776522 1247889999999999986532 25555544432
Q ss_pred h-hhccCCceEEEEEcCCCCC--h----------HHHHHHhcCCcceeEecCCC--------ccccCcEEEEec------
Q 043190 838 I-SSQTERAVRFIGLSTALAN--A----------GDLADWLGVGEIGLFNFKPS--------VRPVPLEVHIQG------ 890 (1492)
Q Consensus 838 ~-~~~~~~~~~ii~lSATl~~--~----------~~~~~~l~~~~~~~~~~~~~--------~r~~~l~~~~~~------ 890 (1492)
. ........++++||||++. . ..+...++..... ..... .++.........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~--~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIS--TVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEE--CCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceee--cccccHHHHHHhccCCcceEEecccccCcHH
Confidence 2 2222456899999999953 1 1222333321100 00000 000000000000
Q ss_pred --------------------------cCCccccc-----ccc--------------------------------------
Q 043190 891 --------------------------YPGKFYCP-----RMN-------------------------------------- 901 (1492)
Q Consensus 891 --------------------------~~~~~~~~-----~~~-------------------------------------- 901 (1492)
.+...+.. ...
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000
Q ss_pred -----------------------------------------------------ccCh---hHHHHHhh---cCCCCCeeE
Q 043190 902 -----------------------------------------------------SMNK---PAYAAICT---HSPTKPVLI 922 (1492)
Q Consensus 902 -----------------------------------------------------~~~~---~~~~~l~~---~~~~~~~LI 922 (1492)
.... .+...+.. ..+++++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 0000 01111222 145789999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CC
Q 043190 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NK 1001 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~ 1001 (1492)
||++++.++.++..|.+.......... ...+.+...+||+|+..+|..+++.|++ |+
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~----------------------~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~ 694 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPG----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCE----------------------EC----------------------------C
T ss_pred EeCCHHHHHHHHHHHhhCcccccccee----------------------EEecCCCcccCCCCCHHHHHHHHHHhhccCC
Confidence 999999999999888652100000000 1124556678999999999999999999 99
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++|||||+++++|||+|++++||+ ||.+ .+..+|+||+|| ||. ..|.+++++...+.+
T Consensus 695 ~~VLVaT~~~~eGIDlp~v~~VI~----yD~p------~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 695 NRLLIATSVADEGIDIVQCNLVVL----YEYS------GNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 752 (936)
T ss_dssp CSEEEEECC------CCCCSEEEE----ESCC------SCSHHHHCC-----------CCCEEEEESCHHHH
T ss_pred eeEEEEeCchhcCCcchhCCEEEE----eCCC------CCHHHHHHhcCC-CCC---CCCEEEEEEeCCCHH
Confidence 999999999999999999999998 6643 368899999999 996 589999998776543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=324.33 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=202.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+.+++|+|. +++.++.++++++++||||||||++|++|++..+.. .+.+++|++||++||.|+++.+. |.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cc
Confidence 6778999985 799998666666999999999999999999876554 36899999999999999988753 44
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.+....+.... ....+..|.++|++.+...+.+ ...++++++|||||||+++.........+..+. ...
T Consensus 72 ~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~------~~~ 140 (451)
T 2jlq_A 72 PIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTDPCSVAARGYISTRV------EMG 140 (451)
T ss_dssp CEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHH---CSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH------HTT
T ss_pred eeeeeeccccc--cCCCCceEEEEChHHHHHHhhC---cccccCCCEEEEeCCccCCcchHHHHHHHHHhh------cCC
Confidence 44433332211 2234568999999987655543 245789999999999977322222222222111 235
Q ss_pred ceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEe
Q 043190 845 AVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFV 924 (1492)
Q Consensus 845 ~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~ 924 (1492)
+.++++||||++. ....++... .+........+...+.. ....+.. ..+++||||
T Consensus 141 ~~~~i~~SAT~~~--~~~~~~~~~-------------~~~~~~~~~~p~~~~~~--------~~~~l~~--~~~~~lVF~ 195 (451)
T 2jlq_A 141 EAAAIFMTATPPG--STDPFPQSN-------------SPIEDIEREIPERSWNT--------GFDWITD--YQGKTVWFV 195 (451)
T ss_dssp SCEEEEECSSCTT--CCCSSCCCS-------------SCEEEEECCCCSSCCSS--------SCHHHHH--CCSCEEEEC
T ss_pred CceEEEEccCCCc--cchhhhcCC-------------CceEecCccCCchhhHH--------HHHHHHh--CCCCEEEEc
Confidence 7899999999965 111111100 01011111111111110 1122222 256999999
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 043190 925 SSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQV 1004 (1492)
Q Consensus 925 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 1004 (1492)
+|++.|+.++..|.+ .+..+..+|+++ +..+++.|++|+++|
T Consensus 196 ~s~~~a~~l~~~L~~----------------------------------~g~~~~~lh~~~----~~~~~~~f~~g~~~v 237 (451)
T 2jlq_A 196 PSIKAGNDIANCLRK----------------------------------SGKRVIQLSRKT----FDTEYPKTKLTDWDF 237 (451)
T ss_dssp SSHHHHHHHHHHHHT----------------------------------TTCCEEEECTTT----HHHHGGGGGSSCCSE
T ss_pred CCHHHHHHHHHHHHH----------------------------------cCCeEEECCHHH----HHHHHHhhccCCceE
Confidence 999999999887732 145678889865 467999999999999
Q ss_pred EEeccccccccCCCCcEEEEecce----eee--CccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 1005 LVCTSTLAWGVNLPAHLVIIKGTE----YYD--GKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 1005 LvaT~~l~~Gvdip~~~~VI~~~~----~~~--~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
||||+++++|+|+|+ ++||+... .|+ +.... ..+.+..+|+||+|||||.|. ..|.|++++..
T Consensus 238 LVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~-~~g~~~~~~~~ 310 (451)
T 2jlq_A 238 VVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFSGD 310 (451)
T ss_dssp EEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECSC
T ss_pred EEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC-CCccEEEEeCC
Confidence 999999999999999 88886331 121 11110 045679999999999999882 27888888754
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=327.38 Aligned_cols=326 Identities=21% Similarity=0.300 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|+|+|.+++..++. + ++++++|||+|||++++++++..+. .++.++||++|+++|+.|.++++.+.++.. +.++.
T Consensus 9 ~l~~~Q~~~i~~~~~-~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE-T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGG-S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEE
T ss_pred CccHHHHHHHHHHhh-C-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcc-hhheE
Confidence 499999999999984 4 9999999999999999999988776 347899999999999999999988765321 34888
Q ss_pred EEcCCCCcchh--ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 768 EMTGDYTPDLM--ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 768 ~~~g~~~~~~~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
.++|+...... ...+++|+|+||+.+...+... ...+.++++||+||||.+.+. ..+..+...+.. ....
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~--~~~~~~~~~~~~----~~~~ 156 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGN--YAYVFIAREYKR----QAKN 156 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTT--CHHHHHHHHHHH----HCSS
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC--CcchhhceEEEEECCcccCCC--CcHHHHHHHHHh----cCCC
Confidence 99998765432 1236899999999987766642 234778999999999988543 234444444432 2357
Q ss_pred eEEEEEcCCCCC-h---HHHHHHhcCCcceeEec-CCCcc----ccCcEEEEeccCCcc---------------------
Q 043190 846 VRFIGLSTALAN-A---GDLADWLGVGEIGLFNF-KPSVR----PVPLEVHIQGYPGKF--------------------- 895 (1492)
Q Consensus 846 ~~ii~lSATl~~-~---~~~~~~l~~~~~~~~~~-~~~~r----~~~l~~~~~~~~~~~--------------------- 895 (1492)
.++++||||+.+ . .++..+++......... ..... +..........+...
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999974 2 33445554432211110 00000 000000000000000
Q ss_pred ---------------------------------ccc---------------------------ccc--------------
Q 043190 896 ---------------------------------YCP---------------------------RMN-------------- 901 (1492)
Q Consensus 896 ---------------------------------~~~---------------------------~~~-------------- 901 (1492)
+.. ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence 000 000
Q ss_pred -----------------------ccC---hhHHHHHhhc---CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC
Q 043190 902 -----------------------SMN---KPAYAAICTH---SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952 (1492)
Q Consensus 902 -----------------------~~~---~~~~~~l~~~---~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 952 (1492)
... ..+...+... .+++++||||+++..+..++..|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~------------- 383 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK------------- 383 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH-------------
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH-------------
Confidence 000 0011112221 5688999999999999998877743
Q ss_pred CChHHHHHHHhhcCcHHHHHHhccceEeecC--------CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEE
Q 043190 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA--------GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVII 1024 (1492)
Q Consensus 953 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~--------~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI 1024 (1492)
.+..+..+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 384 ---------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi 442 (494)
T 1wp9_A 384 ---------------------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442 (494)
T ss_dssp ---------------------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE
T ss_pred ---------------------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEE
Confidence 2567888999 99999999999999999999999999999999999999999
Q ss_pred ecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1025 KGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
. |+++ .++..|.||+|||||.| . |.++.++.++..
T Consensus 443 ~----~d~~------~~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 443 F----YEPV------PSAIRSIQRRGRTGRHM--P-GRVIILMAKGTR 477 (494)
T ss_dssp E----SSCC------HHHHHHHHHHTTSCSCC--C-SEEEEEEETTSH
T ss_pred E----eCCC------CCHHHHHHHHhhccCCC--C-ceEEEEEecCCH
Confidence 7 4322 24779999999999988 3 999999987753
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=326.18 Aligned_cols=332 Identities=14% Similarity=0.104 Sum_probs=215.8
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.|| .|+|+|.++++.++ .|+ |..++||+|||++|.+|++..... +..+++++||++||.|.++.+.. +...+|
T Consensus 80 lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL~--g~~vlVltptreLA~qd~e~~~~-l~~~lg 152 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNALT--GKGVHVVTVNEYLASRDAEQMGK-IFEFLG 152 (844)
T ss_dssp HSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHH-HHHHTT
T ss_pred cCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHH-HHhhcC
Confidence 499 89999999999998 566 999999999999999999854332 67899999999999999888776 555569
Q ss_pred CEEEEEcCCCCcchhcc-CCCcEEEECchhh-hHhhhccc----CccccCcccEEEEecccccC-C-CCccHH-------
Q 043190 764 KEMVEMTGDYTPDLMAL-LSADIIISTPEKW-DGISRNWH----SRNYVKKVGLMILDEIHLLG-A-ERGPIL------- 828 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~-~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~i~liViDEaH~l~-~-~~g~~~------- 828 (1492)
++++++.|+.+.+.+.. .+++|+|+||++| .++++... ....++.+.++|+||||.+. + .+.+.+
T Consensus 153 l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~ 232 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAK 232 (844)
T ss_dssp CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCccc
Confidence 99999999877553332 3689999999998 34443321 23457899999999999753 3 232200
Q ss_pred -HHHHHHHHHhhhccC---------CceEEE-----------------EEcCCCCC-hHHH-----HHHh-cCCcceeE-
Q 043190 829 -EVIVSRMRYISSQTE---------RAVRFI-----------------GLSTALAN-AGDL-----ADWL-GVGEIGLF- 873 (1492)
Q Consensus 829 -~~i~~~l~~~~~~~~---------~~~~ii-----------------~lSATl~~-~~~~-----~~~l-~~~~~~~~- 873 (1492)
..+...+..+...++ ...++. ++|||.+. ...+ +..+ ..+...++
T Consensus 233 ~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~ 312 (844)
T 1tf5_A 233 STKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVE 312 (844)
T ss_dssp CCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEE
T ss_pred chhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEe
Confidence 011112222222222 234444 66777542 1111 1111 10000000
Q ss_pred ----------------------------------ecCCC------------ccccC---------------------cEE
Q 043190 874 ----------------------------------NFKPS------------VRPVP---------------------LEV 886 (1492)
Q Consensus 874 ----------------------------------~~~~~------------~r~~~---------------------l~~ 886 (1492)
...+. ++.++ +.+
T Consensus 313 dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~v 392 (844)
T 1tf5_A 313 DGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQV 392 (844)
T ss_dssp TTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCE
T ss_pred cCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCce
Confidence 00000 00000 000
Q ss_pred EEeccC---------CccccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 887 HIQGYP---------GKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 887 ~~~~~~---------~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
...... ...+... ......+...+.. +..+.++||||+|+..++.++..|..
T Consensus 393 v~IPtn~p~~r~d~~d~v~~~~-~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------------- 454 (844)
T 1tf5_A 393 VTIPTNRPVVRDDRPDLIYRTM-EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------------- 454 (844)
T ss_dssp EECCCSSCCCCEECCCEEESSH-HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT-----------------
T ss_pred EEecCCCCcccccCCcEEEeCH-HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------------
Confidence 000000 0001100 0000112222322 24567899999999999999987743
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC--------CcEEEEecce
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP--------AHLVIIKGTE 1028 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip--------~~~~VI~~~~ 1028 (1492)
.++.+..+||++++.+|..+.++|+.| .|+|||++++||+|++ ++.+||+
T Consensus 455 -----------------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn--- 512 (844)
T 1tf5_A 455 -----------------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--- 512 (844)
T ss_dssp -----------------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE---
T ss_pred -----------------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE---
Confidence 256788999999999988787777766 6999999999999999 8899998
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|+ .+-+...|.||+||+||.| ++|.++.|++..+
T Consensus 513 -~d------~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 513 -TE------RHESRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp -SS------CCSSHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred -ec------CCCCHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 33 2335889999999999988 9999999987654
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=321.69 Aligned_cols=299 Identities=20% Similarity=0.204 Sum_probs=207.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh-ccC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM-ALL 781 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~-~~~ 781 (1492)
.+++++++||||||||+.++..+.. .+..+|++|+|+||.|+++++.+. |.++..++|+...-.. ...
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~------~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFS------AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH------SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCSTTCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHh------cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEecCCCc
Confidence 6789999999999999954444433 244599999999999999998662 7889999997654211 112
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD 860 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~ 860 (1492)
..+++++|++.+. ....++++||||+|++.+ ++|..++.++.+++ ....+++++|||.+....
T Consensus 223 ~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~i~~ 286 (677)
T 3rc3_A 223 QASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDLVME 286 (677)
T ss_dssp CCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHHHHH
T ss_pred ccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHHHHH
Confidence 3678888887543 246789999999998864 68888877766542 257899999999766666
Q ss_pred HHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHH
Q 043190 861 LADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQF 940 (1492)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~ 940 (1492)
+..+.+.... +. ...+..++..... ....+... .+..+|||+++++++.++..|.+
T Consensus 287 l~~~~~~~~~-v~---~~~r~~~l~~~~~-----------------~l~~l~~~--~~g~iIf~~s~~~ie~la~~L~~- 342 (677)
T 3rc3_A 287 LMYTTGEEVE-VR---DYKRLTPISVLDH-----------------ALESLDNL--RPGDCIVCFSKNDIYSVSRQIEI- 342 (677)
T ss_dssp HHHHHTCCEE-EE---ECCCSSCEEECSS-----------------CCCSGGGC--CTTEEEECSSHHHHHHHHHHHHH-
T ss_pred HHHhcCCceE-EE---EeeecchHHHHHH-----------------HHHHHHhc--CCCCEEEEcCHHHHHHHHHHHHh-
Confidence 6666543221 11 1122222221100 00011111 24458999999999999887743
Q ss_pred HhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEeccccccccCCC
Q 043190 941 AASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN--NKIQVLVCTSTLAWGVNLP 1018 (1492)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vLvaT~~l~~Gvdip 1018 (1492)
.+.++.++||+|++++|..+++.|++ |.++|||||+++++|||+
T Consensus 343 ---------------------------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi- 388 (677)
T 3rc3_A 343 ---------------------------------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL- 388 (677)
T ss_dssp ---------------------------------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-
T ss_pred ---------------------------------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-
Confidence 25789999999999999999999999 899999999999999999
Q ss_pred CcEEEEe-ccee--eeCccC-ccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCcHHHHHHhh-cCCCceee
Q 043190 1019 AHLVIIK-GTEY--YDGKTK-RYVDFPITDILQMMGRAGRPQYD-QHGKAVILVHEPKKSFYKKFL-YEPFPVES 1087 (1492)
Q Consensus 1019 ~~~~VI~-~~~~--~~~~~~-~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l~~~~~~~~~~~~l-~~~~pies 1087 (1492)
++++||+ +... |++..+ .+.+++.++|+||+|||||.|.+ ..|.|+.++.++ ...+.+++ ....++++
T Consensus 389 ~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d-~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 389 SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED-LSLLKEILKRPVDPIRA 462 (677)
T ss_dssp CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH-HHHHHHHHHSCCCCCCC
T ss_pred CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch-HHHHHHHHhcCcchhhh
Confidence 5665554 4433 232211 23578899999999999999855 458888776554 34555555 44455665
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=323.00 Aligned_cols=298 Identities=12% Similarity=0.040 Sum_probs=204.3
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
...++|+|+++++.+. ++++++++||||||||++|++|+++.+.. .+.+++|++|||+||.|+++.+. +..
T Consensus 169 ~~~~lpiq~~~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~~ 239 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GLP 239 (618)
T ss_dssp CCCCCCCCCCCGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSC
T ss_pred cccCCCccccCHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CCc
Confidence 4678899888877766 88999999999999999999999987765 46799999999999999987654 334
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
+. +.+... ......+..+.++|.+.+...+.. ...++++++||+||||+++..+...+..+..++. ..+
T Consensus 240 v~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~------~~~ 308 (618)
T 2whx_A 240 IR-YQTPAV-KSDHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE------MGE 308 (618)
T ss_dssp EE-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHHH---CSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH------HTS
T ss_pred ee-Eecccc-eeccCCCceEEEEChHHHHHHHhc---cccccCCeEEEEECCCCCCccHHHHHHHHHHHhc------ccC
Confidence 44 222211 111223445667777766543332 2447899999999999884344444555554442 147
Q ss_pred eEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEec
Q 043190 846 VRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVS 925 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~ 925 (1492)
.|+++||||+++. +..+.... +..+.+.. .++... ....+..+.. .++++||||+
T Consensus 309 ~q~il~SAT~~~~--~~~~~~~~------------~~~~~v~~-~~~~~~--------~~~ll~~l~~--~~~~~LVF~~ 363 (618)
T 2whx_A 309 AAAIFMTATPPGS--TDPFPQSN------------SPIEDIER-EIPERS--------WNTGFDWITD--YQGKTVWFVP 363 (618)
T ss_dssp CEEEEECSSCTTC--CCSSCCCS------------SCEEEEEC-CCCSSC--------CSSSCHHHHH--CCSCEEEECS
T ss_pred ccEEEEECCCchh--hhhhhccC------------Cceeeecc-cCCHHH--------HHHHHHHHHh--CCCCEEEEEC
Confidence 8999999999752 11111100 00011110 011100 0112222332 3679999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEE
Q 043190 926 SRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVL 1005 (1492)
Q Consensus 926 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vL 1005 (1492)
|++.|+.++..|.+ .+..+..+||+ +|..+++.|++|+++||
T Consensus 364 s~~~a~~l~~~L~~----------------------------------~g~~v~~lhg~----~R~~~l~~F~~g~~~VL 405 (618)
T 2whx_A 364 SIKAGNDIANCLRK----------------------------------SGKRVIQLSRK----TFDTEYPKTKLTDWDFV 405 (618)
T ss_dssp SHHHHHHHHHHHHH----------------------------------TTCCEEEECTT----THHHHTTHHHHSCCSEE
T ss_pred ChhHHHHHHHHHHH----------------------------------cCCcEEEEChH----HHHHHHHhhcCCCcEEE
Confidence 99999999988743 25678889984 78889999999999999
Q ss_pred EeccccccccCCCCcEEEEecceeeeCc----------cCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGK----------TKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 1006 vaT~~l~~Gvdip~~~~VI~~~~~~~~~----------~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
|||+++++|+|+| +++||+....+++. .....+.+.++|+||+|||||.| ...|.|++++.
T Consensus 406 VaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 406 VTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp EECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred EECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 9999999999998 78777644333321 01113467999999999999986 24899999986
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=317.66 Aligned_cols=286 Identities=20% Similarity=0.111 Sum_probs=192.5
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM 769 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~ 769 (1492)
++.|.+ +..++.++++++++||||||||.++.+++++. +.+++|++|+|+||.|+++++.+.+ +..+...
T Consensus 219 ~~~q~~-i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~ 288 (666)
T 3o8b_A 219 FTDNSS-PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAH----GIDPNIR 288 (666)
T ss_dssp CCCCCS-CCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHH----SCCCEEE
T ss_pred HHHHHH-HHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHh----CCCeeEE
Confidence 344444 44444478899999999999999999998873 6799999999999999998876655 5566677
Q ss_pred cCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEE
Q 043190 770 TGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFI 849 (1492)
Q Consensus 770 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii 849 (1492)
.|+.. ...+++|+|+||++| +++ ....+++++++||||||+++..+...+..++..+. . .....++
T Consensus 289 vG~~~----~~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~----~-~~~~lli 354 (666)
T 3o8b_A 289 TGVRT----ITTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAE----T-AGARLVV 354 (666)
T ss_dssp CSSCE----ECCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTT----T-TTCSEEE
T ss_pred ECcEe----ccCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhh----h-cCCceEE
Confidence 77643 235789999999987 232 23347789999999999875443333433333321 1 2234478
Q ss_pred EEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHH
Q 043190 850 GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ 929 (1492)
Q Consensus 850 ~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~ 929 (1492)
++|||+++. +.... +....... .+... ... ...... .....++++||||++++.
T Consensus 355 l~SAT~~~~------i~~~~-----------p~i~~v~~-~~~~~--i~~---~~~~~~---l~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 355 LATATPPGS------VTVPH-----------PNIEEVAL-SNTGE--IPF---YGKAIP---IEAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp EEESSCTTC------CCCCC-----------TTEEEEEC-BSCSS--EEE---TTEEEC---GGGSSSSEEEEECSCHHH
T ss_pred EECCCCCcc------cccCC-----------cceEEEee-cccch--hHH---HHhhhh---hhhccCCcEEEEeCCHHH
Confidence 889999862 11100 00000000 00000 000 000000 112357899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecc
Q 043190 930 TRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009 (1492)
Q Consensus 930 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~ 1009 (1492)
++.++..|.+ .+..+..+||+|++++ |+++..+|||||+
T Consensus 409 ae~la~~L~~----------------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVATd 447 (666)
T 3o8b_A 409 CDELAAKLSG----------------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVATD 447 (666)
T ss_dssp HHHHHHHHHT----------------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEECT
T ss_pred HHHHHHHHHh----------------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEECC
Confidence 9999987743 2567899999999886 4566679999999
Q ss_pred ccccccCCCCcEEEEecc----e--e--eeCccC---ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1010 TLAWGVNLPAHLVIIKGT----E--Y--YDGKTK---RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1010 ~l~~Gvdip~~~~VI~~~----~--~--~~~~~~---~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++++|||+| +++||+.. . . ||+..+ ...+.+.++|+||+||+|| | ..|. +.|+++.+
T Consensus 448 VaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 448 ALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp THHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred hHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecch
Confidence 999999998 88888522 1 1 233211 0135568999999999999 6 7899 88887655
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=311.81 Aligned_cols=329 Identities=16% Similarity=0.128 Sum_probs=204.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+ .|+|+|..+++.++ .|+ +..++||+|||++|.+|++..... +..+++++||++||.|.++.+.. +...+|+
T Consensus 72 g~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l~--g~~vlVltPTreLA~Q~~e~~~~-l~~~lgl 144 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNALT--GKGVHVVTVNDYLAQRDAENNRP-LFEFLGL 144 (853)
T ss_dssp SC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHTT--SSCCEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred CC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHHc--CCcEEEEcCCHHHHHHHHHHHHH-HHHhcCC
Confidence 65 69999999999988 565 999999999999999999865433 67899999999999999988877 4555699
Q ss_pred EEEEEcCCCCcchhcc-CCCcEEEECchhh-hHhhhccc----CccccCcccEEEEecccccC-CC-C------------
Q 043190 765 EMVEMTGDYTPDLMAL-LSADIIISTPEKW-DGISRNWH----SRNYVKKVGLMILDEIHLLG-AE-R------------ 824 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~-~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~i~liViDEaH~l~-~~-~------------ 824 (1492)
+++.+.|+.+.+.+.. .+++|+|+||+++ .++++... ....+++++++|+||||.+. ++ +
T Consensus 145 ~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccc
Confidence 9999999877543332 3689999999997 45555422 13456899999999999664 32 2
Q ss_pred ---ccHHHHHHHHHHHhh----------hcc---CCceEEE------------------------EEcCCCCC-hHHHH-
Q 043190 825 ---GPILEVIVSRMRYIS----------SQT---ERAVRFI------------------------GLSTALAN-AGDLA- 862 (1492)
Q Consensus 825 ---g~~~~~i~~~l~~~~----------~~~---~~~~~ii------------------------~lSATl~~-~~~~~- 862 (1492)
...+..++..+..-. ... .+..++. ++|||.+. ...+.
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 123344444443100 000 0122222 67887542 11110
Q ss_pred ----HH-hcCCcc--------------------------e---------eEecCCC------------ccc---------
Q 043190 863 ----DW-LGVGEI--------------------------G---------LFNFKPS------------VRP--------- 881 (1492)
Q Consensus 863 ----~~-l~~~~~--------------------------~---------~~~~~~~------------~r~--------- 881 (1492)
.. +..+.. + -+...+. ++.
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 000000 0 0000000 000
Q ss_pred ------------cCcEEEEeccCCcc-----------ccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHH
Q 043190 882 ------------VPLEVHIQGYPGKF-----------YCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDL 937 (1492)
Q Consensus 882 ------------~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L 937 (1492)
+.+.+.. +|... +... ......+...+.. +..+.|+||||+|+..++.++..|
T Consensus 385 Ta~te~~ef~~iY~l~vv~--IPtn~p~~R~d~~d~v~~~~-~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTVV--VPTNRPMIRKDLPDLVYMTE-AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp TTCCCHHHHHHHHCCEEEE--CCCSSCCCCEECCCEEESSH-HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred CchhHHHHHHHHhCCcEEE--cCCCCCceeecCCcEEEeCH-HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 0011111 11110 1110 0001112223322 356789999999999999999888
Q ss_pred HHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC
Q 043190 938 IQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017 (1492)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi 1017 (1492)
.+ .++.+..+||+....+|..+.++|+.| .|+|||++++||+||
T Consensus 462 ~~----------------------------------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI 505 (853)
T 2fsf_A 462 TK----------------------------------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDI 505 (853)
T ss_dssp HH----------------------------------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCC
T ss_pred HH----------------------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCc
Confidence 44 266788999999999999999999998 699999999999999
Q ss_pred CCc-------------------------------------EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 1018 PAH-------------------------------------LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 1018 p~~-------------------------------------~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+.. .+||+ |+ .+-+...|.||+||+||.| ++
T Consensus 506 ~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te------~pes~riy~qr~GRTGRqG--d~ 573 (853)
T 2fsf_A 506 VLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TE------RHESRRIDNQLRGRSGRQG--DA 573 (853)
T ss_dssp CTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SS------CCSSHHHHHHHHTTSSGGG--CC
T ss_pred cCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----cc------CCCCHHHHHhhccccccCC--CC
Confidence 973 68997 32 2335889999999999988 99
Q ss_pred eEEEEEecCCc
Q 043190 1061 GKAVILVHEPK 1071 (1492)
Q Consensus 1061 G~~i~l~~~~~ 1071 (1492)
|.++.+++..+
T Consensus 574 G~s~~fls~eD 584 (853)
T 2fsf_A 574 GSSRFYLSMED 584 (853)
T ss_dssp EEEEEEEETTS
T ss_pred eeEEEEecccH
Confidence 99999987665
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=323.36 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
..|+|+|.++++.++ .++++++++|||+|||++++.++...+.. ++++++|++|+++|+.|.++++.+ +....+.++
T Consensus 112 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVD-YRLFSHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGE
T ss_pred CCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHH-hhcCCccce
Confidence 369999999999998 56899999999999999999999887754 345999999999999999999965 444435678
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..++|+..........++|+|+||+.+. +. ....++++++|||||+|.+.. ..+.. +........
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~---~~--~~~~~~~~~liIiDE~H~~~~---~~~~~-------il~~~~~~~ 253 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---KSISS-------IISGLNNCM 253 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---HHHHH-------HGGGCTTCC
T ss_pred EEEecCCccccccccCCcEEEEeHHHHh---hc--hhhhhhcCCEEEEECCcCCCc---ccHHH-------HHHhcccCc
Confidence 8888876655444567899999999653 22 224577899999999998853 22222 223344577
Q ss_pred EEEEEcCCCCChH----HHHHHhcCCcceeEecCCC-------ccccCcEEEEeccCC--------ccccccccc-----
Q 043190 847 RFIGLSTALANAG----DLADWLGVGEIGLFNFKPS-------VRPVPLEVHIQGYPG--------KFYCPRMNS----- 902 (1492)
Q Consensus 847 ~ii~lSATl~~~~----~~~~~l~~~~~~~~~~~~~-------~r~~~l~~~~~~~~~--------~~~~~~~~~----- 902 (1492)
++++||||+++.. .+..+++.. ++..... ..+..+.......+. ..+......
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEI---FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS 330 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSE---ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCe---EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH
Confidence 9999999996531 223334321 1111111 000011111111110 001100000
Q ss_pred -cChhHHHHHhhc-C-CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 903 -MNKPAYAAICTH-S-PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 903 -~~~~~~~~l~~~-~-~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
....+...+... . .+++++||++ .+.+..++..|.+ .+..+.
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~----------------------------------~~~~v~ 375 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN----------------------------------EYDKVY 375 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT----------------------------------TCSSEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH----------------------------------cCCCeE
Confidence 000111112111 2 3445566665 7777777666532 123789
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEec-cccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCT-STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD 1058 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT-~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~ 1058 (1492)
.+||+++..+|..+++.|++|+.+||||| +++++|+|+|++++||. +++ +.+..+|.||+||+||.|
T Consensus 376 ~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~------~~s~~~~~Q~~GR~gR~g-- 443 (510)
T 2oca_A 376 YVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHG------VKSKIIVLQTIGRVLRKH-- 443 (510)
T ss_dssp EESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSC------CCSCCHHHHHHHHHHTTT--
T ss_pred EEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCC------CCCHHHHHHHHhcccccC--
Confidence 99999999999999999999999999999 99999999999999997 443 235789999999999988
Q ss_pred CceEEEEE
Q 043190 1059 QHGKAVIL 1066 (1492)
Q Consensus 1059 ~~G~~i~l 1066 (1492)
..|.++++
T Consensus 444 ~~~~~v~i 451 (510)
T 2oca_A 444 GSKTIATV 451 (510)
T ss_dssp CCCCCCEE
T ss_pred CCCceEEE
Confidence 44433333
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-30 Score=312.82 Aligned_cols=289 Identities=15% Similarity=0.118 Sum_probs=187.4
Q ss_pred HhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch
Q 043190 698 HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777 (1492)
Q Consensus 698 ~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~ 777 (1492)
+.++.++++++++||||||||++|++|+++.+.. .+.+++|++|+|+||.|+++.+. |..+....+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC-
Confidence 5556688999999999999999999999987654 36899999999999999988764 44444433332211
Q ss_pred hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 778 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
......+.++|.+.+...+. ....++++++|||||||.++......+ ..+.... ...+.++++||||++.
T Consensus 86 -~t~~~~i~~~~~~~l~~~l~---~~~~l~~~~~iViDEaH~~~~~~~~~~----~~~~~~~--~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 86 -HQGNEIVDVMCHATLTHRLM---SPNRVPNYNLFVMDEAHFTDPASIAAR----GYIATKV--ELGEAAAIFMTATPPG 155 (459)
T ss_dssp ---CCCSEEEEEHHHHHHHHH---SCC-CCCCSEEEESSTTCCSHHHHHHH----HHHHHHH--HTTSCEEEEECSSCTT
T ss_pred -CCCCcEEEEEchHHHHHHhh---ccccccCCcEEEEECCccCCchhhHHH----HHHHHHh--ccCCccEEEEEcCCCc
Confidence 12234567788776543333 234578999999999997522111122 2222221 1357899999999974
Q ss_pred hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHH
Q 043190 858 AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDL 937 (1492)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L 937 (1492)
. +. .+... ..++.......+...+. ..+..+.. .++++||||++++.++.++..|
T Consensus 156 ~--~~-----------~~~~~--~~pi~~~~~~~~~~~~~--------~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 156 T--TD-----------PFPDS--NAPIHDLQDEIPDRAWS--------SGYEWITE--YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp C--CC-----------SSCCC--SSCEEEEECCCCSSCCS--------SCCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred c--hh-----------hhccC--CCCeEEecccCCcchhH--------HHHHHHHh--cCCCEEEEeCChHHHHHHHHHH
Confidence 2 11 11111 11221111111111111 11222222 2679999999999999999877
Q ss_pred HHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC
Q 043190 938 IQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017 (1492)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi 1017 (1492)
.. .+..+..+|+. +|..+++.|++|+++|||||+++++|+|+
T Consensus 211 ~~----------------------------------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDi 252 (459)
T 2z83_A 211 QR----------------------------------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANF 252 (459)
T ss_dssp HH----------------------------------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCC
T ss_pred Hh----------------------------------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeec
Confidence 43 25678889984 78889999999999999999999999999
Q ss_pred CCcEEEEeccee------eeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 1018 PAHLVIIKGTEY------YDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 1018 p~~~~VI~~~~~------~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
|+ .+||+.... |++..+. -.+.+..+|+||+|||||.| ...|.|++++...
T Consensus 253 p~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 253 GA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp SC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred CC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 99 888863211 1211110 14457999999999999987 1289999998775
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-30 Score=318.77 Aligned_cols=302 Identities=18% Similarity=0.182 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE-E
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE-M 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~-v 766 (1492)
.|+|+|.++++.++ .++++++++|||+|||++++.++... +.+++|++|+++|+.|.++++.+ | |.+ +
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-G----CGGGE
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-C----CCcce
Confidence 59999999999998 56789999999999999999998875 68999999999999998877655 3 778 9
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..++|+... ..+|+|+||+.+...... ..+++++||+||+|.+.+.. +..++.. -...
T Consensus 162 ~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~~~---~~~~~~~--------~~~~ 219 (472)
T 2fwr_A 162 GEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIAQM--------SIAP 219 (472)
T ss_dssp EEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTSTT---THHHHHT--------CCCS
T ss_pred EEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCChH---HHHHHHh--------cCCC
Confidence 999887643 478999999987554432 12468999999999886432 2222221 1357
Q ss_pred EEEEEcCCCCChH----HHHHHhcCCcce--eEec----CCCccccCcEEEEecc------------------------C
Q 043190 847 RFIGLSTALANAG----DLADWLGVGEIG--LFNF----KPSVRPVPLEVHIQGY------------------------P 892 (1492)
Q Consensus 847 ~ii~lSATl~~~~----~~~~~l~~~~~~--~~~~----~~~~r~~~l~~~~~~~------------------------~ 892 (1492)
+++++|||+.+.+ .+..+++..... ...+ ........+....... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 8899999997532 234444321000 0000 0001111111100000 0
Q ss_pred Cccccccc-------------------------cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCC
Q 043190 893 GKFYCPRM-------------------------NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETP 947 (1492)
Q Consensus 893 ~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~ 947 (1492)
...+.... ...+......+.....++++||||++++.++.++..|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l---------- 369 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF---------- 369 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT----------
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh----------
Confidence 00000000 0000011122223356789999999999888777544
Q ss_pred cccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecc
Q 043190 948 RQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGT 1027 (1492)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~ 1027 (1492)
++..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||.
T Consensus 370 -----------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~-- 418 (472)
T 2fwr_A 370 -----------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI-- 418 (472)
T ss_dssp -----------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--
T ss_pred -----------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--
Confidence 3567899999999999999999999999999999999999999999997
Q ss_pred eeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCc
Q 043190 1028 EYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVILVHEPK 1071 (1492)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l~~~~~ 1071 (1492)
|+++ .+...|.||+|||||.|.+ ....+|.++..+.
T Consensus 419 --~~~~------~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 419 --MSGS------GSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp --ECCS------SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred --ECCC------CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 5533 3678999999999999855 4566666776543
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=308.62 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=176.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
.++++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+. +..+....+...
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~------- 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS------- 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC-------
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHh-------cCCeEEecccce-------
Confidence 478999999999999999999999987655 36799999999999999988764 223333332211
Q ss_pred CCcEEEECchhhhHhhhc------ccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 782 SADIIISTPEKWDGISRN------WHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~------~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.++||+++..++.. ......+++++++|+||+|+++.. ....+..+..... ..+.++++||||+
T Consensus 71 ----~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~~~~~~--~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ----AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPA----SIAARGWAAHRAR--ANESATILMTATP 140 (440)
T ss_dssp ----CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHH----HHHHHHHHHHHHH--TTSCEEEEECSSC
T ss_pred ----eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcc----hHHHHHHHHHHhc--cCCceEEEEeCCC
Confidence 37788776443332 112234789999999999988222 2222222222221 3578999999998
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
+.. +..+. .. ..++.......+... ....+..+.. .++++||||++++.++.++.
T Consensus 141 ~~~--~~~~~-----------~~--~~~~~~~~~~~~~~~--------~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 141 PGT--SDEFP-----------HS--NGEIEDVQTDIPSEP--------WNTGHDWILA--DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp TTC--CCSSC-----------CC--SSCEEEEECCCCSSC--------CSSSCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred Cch--hhhhh-----------hc--CCCeeEeeeccChHH--------HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHH
Confidence 642 11111 01 111111111111100 0112222332 26799999999999999998
Q ss_pred HHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 043190 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015 (1492)
Q Consensus 936 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gv 1015 (1492)
.|.+ .+..+..+|| ++|..+++.|++|+++|||||+++++|+
T Consensus 196 ~L~~----------------------------------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~Gi 237 (440)
T 1yks_A 196 SLRK----------------------------------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGA 237 (440)
T ss_dssp HHHH----------------------------------TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCT
T ss_pred HHHH----------------------------------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheee
Confidence 7743 2567899999 5788999999999999999999999999
Q ss_pred CCCCcEEEEecce----eeeCccC-----ccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 1016 NLPAHLVIIKGTE----YYDGKTK-----RYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 1016 dip~~~~VI~~~~----~~~~~~~-----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
|+| +++||+... .|..... ...+.+.++|+||+||+||.| +..|.|++++
T Consensus 238 Dip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 238 NLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp TCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred ccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 999 888885221 1100000 113567999999999999973 2689999996
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-30 Score=323.36 Aligned_cols=290 Identities=14% Similarity=0.098 Sum_probs=191.9
Q ss_pred CCCHHHH-----HHHHhhh-----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 688 HFNPIQT-----QIFHILY-----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 688 ~l~~~Q~-----~~i~~~~-----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+|+++|. ++++.++ ..+++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~- 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRG- 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhc-
Confidence 8999999 8998765 368999999999999999999999987655 368999999999999999887642
Q ss_pred hhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhh------cccCccccCcccEEEEecccccCCCCccHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISR------NWHSRNYVKKVGLMILDEIHLLGAERGPILEVI 831 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~------~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i 831 (1492)
. ++ ....+... .++||+++..++. .......+++++++||||+|+++ ......
T Consensus 293 ---~-~i--~~~~~~l~-----------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~----~~~~~~ 351 (673)
T 2wv9_A 293 ---L-PV--RYLTPAVQ-----------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD----PASIAA 351 (673)
T ss_dssp ---S-CC--EECCC--------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC----HHHHHH
T ss_pred ---C-Ce--eeeccccc-----------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC----ccHHHH
Confidence 1 22 22211111 1556655432222 11122357899999999999872 222222
Q ss_pred HHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 832 VSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 832 ~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
...+..... ....++++||||++.. +..+... ..++......++... ....+..+
T Consensus 352 ~~~l~~~~~--~~~~~vl~~SAT~~~~-------------i~~~~~~--~~~i~~v~~~~~~~~--------~~~~l~~l 406 (673)
T 2wv9_A 352 RGYIATRVE--AGEAAAIFMTATPPGT-------------SDPFPDT--NSPVHDVSSEIPDRA--------WSSGFEWI 406 (673)
T ss_dssp HHHHHHHHH--TTSCEEEEECSSCTTC-------------CCSSCCC--SSCEEEEECCCCSSC--------CSSCCHHH
T ss_pred HHHHHHhcc--ccCCcEEEEcCCCChh-------------hhhhccc--CCceEEEeeecCHHH--------HHHHHHHH
Confidence 333333221 2578999999999641 1111111 112211111111110 11122223
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
.. .++++||||++++.++.++..|.+ .+..+..+|| ++|.
T Consensus 407 ~~--~~~~~lVF~~s~~~~e~la~~L~~----------------------------------~g~~v~~lHg----~eR~ 446 (673)
T 2wv9_A 407 TD--YAGKTVWFVASVKMSNEIAQCLQR----------------------------------AGKRVIQLNR----KSYD 446 (673)
T ss_dssp HS--CCSCEEEECSSHHHHHHHHHHHHT----------------------------------TTCCEEEECS----SSHH
T ss_pred Hh--CCCCEEEEECCHHHHHHHHHHHHh----------------------------------CCCeEEEeCh----HHHH
Confidence 32 478999999999999999887732 2567899999 4899
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEeccee------eeCccC----ccccCCHHHHHHhhcccCCCCCCCce
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY------YDGKTK----RYVDFPITDILQMMGRAGRPQYDQHG 1061 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~------~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G 1061 (1492)
.+++.|++|+++|||||+++++|||+| +.+||+.... |+...+ ...+.+.++|+||+||+||.+ +..|
T Consensus 447 ~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G 524 (673)
T 2wv9_A 447 TEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIG 524 (673)
T ss_dssp HHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCC
T ss_pred HHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCC
Confidence 999999999999999999999999999 8888863211 222100 013456899999999999973 3789
Q ss_pred EEEEEe
Q 043190 1062 KAVILV 1067 (1492)
Q Consensus 1062 ~~i~l~ 1067 (1492)
.|++++
T Consensus 525 ~ai~l~ 530 (673)
T 2wv9_A 525 DEYHYG 530 (673)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999996
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=300.28 Aligned_cols=335 Identities=15% Similarity=0.119 Sum_probs=220.9
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
..|+ .|+|+|..+++.++ .|+ |..++||+|||++|.+|++..... +..+++++||+.||.|.++.+.. +...+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~~-l~~~l 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMGR-VHRFL 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHHH-HHHHT
T ss_pred HcCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHHH-HHhhc
Confidence 3488 79999999999987 555 999999999999999999754333 67899999999999999988776 55566
Q ss_pred CCEEEEEcCCCCcchhcc-CCCcEEEECchhh-hHhhhccc----CccccCcccEEEEecccccC-C-CCccH-------
Q 043190 763 GKEMVEMTGDYTPDLMAL-LSADIIISTPEKW-DGISRNWH----SRNYVKKVGLMILDEIHLLG-A-ERGPI------- 827 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~-~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~i~liViDEaH~l~-~-~~g~~------- 827 (1492)
|++|+++.|+.+.+.+.. ..++|+|+||++| .++++... ....++.+.++||||||.+. + .+.|.
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 999999999877543322 3689999999997 34444321 23456789999999999653 3 22210
Q ss_pred -HHHHHHHHHHhhhccC---------CceEEE-----------------EEcCCCCC-hHHHHH------HhcCCcceeE
Q 043190 828 -LEVIVSRMRYISSQTE---------RAVRFI-----------------GLSTALAN-AGDLAD------WLGVGEIGLF 873 (1492)
Q Consensus 828 -~~~i~~~l~~~~~~~~---------~~~~ii-----------------~lSATl~~-~~~~~~------~l~~~~~~~~ 873 (1492)
...+...+..+...++ +..++. ++|||.+. ...+.. ++..+...++
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 0111222222222233 466777 78999765 222221 1111111110
Q ss_pred e------cC-CCccc-------------------cCc---EEEEecc---------------------------------
Q 043190 874 N------FK-PSVRP-------------------VPL---EVHIQGY--------------------------------- 891 (1492)
Q Consensus 874 ~------~~-~~~r~-------------------~~l---~~~~~~~--------------------------------- 891 (1492)
. .. ...|. +.+ ......+
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 0 00 00000 000 0000000
Q ss_pred ----CCccccccc----------cccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 892 ----PGKFYCPRM----------NSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 892 ----~~~~~~~~~----------~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
|......+. ......+...+.. +..+.|+||||+|+..++.++..|.+
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~----------------- 482 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK----------------- 482 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH-----------------
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------------
Confidence 000000000 0000011222322 34567999999999999999988744
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCc----------------
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH---------------- 1020 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~---------------- 1020 (1492)
.+..+..+||+....++..+.++|+.| .|+|||++++||+||+..
T Consensus 483 -----------------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~ 543 (922)
T 1nkt_A 483 -----------------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGL 543 (922)
T ss_dssp -----------------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTC
T ss_pred -----------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccc
Confidence 266788999999888888888999888 699999999999999964
Q ss_pred ------------------------------------EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 1021 ------------------------------------LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 1021 ------------------------------------~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
.+||+ |+ .+-+...|.||+||+||.| ++|.++
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~----te------~pes~riy~qr~GRTGRqG--dpG~s~ 611 (922)
T 1nkt_A 544 DPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG----TE------RHESRRIDNQLRGRSGRQG--DPGESR 611 (922)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE----CS------CCSSHHHHHHHHHTSSGGG--CCEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe----cc------CCCCHHHHHHHhcccccCC--CCeeEE
Confidence 58887 32 2335889999999999988 999999
Q ss_pred EEecCCcH
Q 043190 1065 ILVHEPKK 1072 (1492)
Q Consensus 1065 ~l~~~~~~ 1072 (1492)
.+++..+.
T Consensus 612 fflSleD~ 619 (922)
T 1nkt_A 612 FYLSLGDE 619 (922)
T ss_dssp EEEETTSH
T ss_pred EEechhHH
Confidence 99887653
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=292.92 Aligned_cols=280 Identities=16% Similarity=0.106 Sum_probs=181.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
+++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+. |..+...+|.... ....+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--~~~~~~ 71 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--ERTGNE 71 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc--cCCCCc
Confidence 6899999999999999999999965544 36799999999999999887653 4566666665321 112244
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHH
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLAD 863 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~ 863 (1492)
.+.++|.+.+...+.. ...++++++|||||+|+++ .........++... .....++++||||+++.
T Consensus 72 ~~~~~~~~~l~~~l~~---~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~----- 137 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQ---GVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT----- 137 (431)
T ss_dssp SEEEEEHHHHHHHHHH---TCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC-----
T ss_pred eEEEEchHHHHHHHhc---CccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc-----
Confidence 5667787766433332 2347899999999999763 22333344444332 13579999999999751
Q ss_pred HhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhc
Q 043190 864 WLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAS 943 (1492)
Q Consensus 864 ~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~ 943 (1492)
+..+..... ++......++... ....+..+.. .++++||||++++.++.++..|.+.
T Consensus 138 --------~~~~~~~~~--~i~~~~~~~~~~~--------~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~--- 194 (431)
T 2v6i_A 138 --------TEAFPPSNS--PIIDEETRIPDKA--------WNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKA--- 194 (431)
T ss_dssp --------CCSSCCCSS--CCEEEECCCCSSC--------CSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred --------hhhhcCCCC--ceeeccccCCHHH--------HHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHc---
Confidence 111111111 1111111111111 0112223333 3578999999999999998877431
Q ss_pred CCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEE
Q 043190 944 DETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVI 1023 (1492)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~V 1023 (1492)
+..+..+||+ +|..+++.|++|+++|||||+++++|+|+| +..|
T Consensus 195 -------------------------------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~V 238 (431)
T 2v6i_A 195 -------------------------------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRV 238 (431)
T ss_dssp -------------------------------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEE
T ss_pred -------------------------------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEE
Confidence 5678999987 688899999999999999999999999999 5554
Q ss_pred Eecceee----eC---ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 1024 IKGTEYY----DG---KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 1024 I~~~~~~----~~---~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
|.....+ +. -.....+.+.++|+||+||+||.|. ..|.++++.
T Consensus 239 I~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~ 288 (431)
T 2v6i_A 239 IDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIYAYS 288 (431)
T ss_dssp EECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEEEEC
T ss_pred EecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEEEEc
Confidence 4321111 10 0001145579999999999999862 345566665
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=310.83 Aligned_cols=323 Identities=15% Similarity=0.148 Sum_probs=189.6
Q ss_pred CCCHHHHHHHHhhhc----CCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHH-HHHH
Q 043190 688 HFNPIQTQIFHILYH----TDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERM-NDWK 755 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~----~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~-~~~~ 755 (1492)
.|+|+|.++++.+++ +++++++++|||||||++++..+...+... .++++||++|+++|+.|.+ +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998774 457899999999999999877776666544 5789999999999999987 4433
Q ss_pred HHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc--cCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 756 DRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW--HSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~--~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.+ +..+..+.++. ...+.+|+|+||+++....+.. ........+++||+||||++....+..+..++.
T Consensus 258 ----~~-~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~ 327 (590)
T 3h1t_A 258 ----PF-GDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILE 327 (590)
T ss_dssp ----TT-CSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHH
T ss_pred ----hc-chhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHH
Confidence 32 45555554432 2246799999999986654321 112234678999999999886433345555554
Q ss_pred HHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCc---cccCcEEEEecc--C--------------
Q 043190 834 RMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSV---RPVPLEVHIQGY--P-------------- 892 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~---r~~~l~~~~~~~--~-------------- 892 (1492)
.+ ...++++||||+... .+...+++.... .+.+.... ...+........ .
T Consensus 328 ~~--------~~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 328 YF--------EPAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp HS--------TTSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred hC--------CcceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 33 246799999998753 345556653211 11000000 000111100000 0
Q ss_pred -----Ccccccc-c----------cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 893 -----GKFYCPR-M----------NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 893 -----~~~~~~~-~----------~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
...+... . ..+...+...+....+.+++||||++++.|+.++..|.+....
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~------------- 465 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD------------- 465 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH-------------
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh-------------
Confidence 0000000 0 0000011112233356689999999999999999988654221
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEeccccccccCCCCcEEEEecceeeeCc
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQ---VLVCTSTLAWGVNLPAHLVIIKGTEYYDGK 1033 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~ 1033 (1492)
.....+..+..+||+++ ++|..+++.|++|+.+ |||||+++++|+|+|++++||. |++.
T Consensus 466 -------------~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~~~ 527 (590)
T 3h1t_A 466 -------------LSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----ARVV 527 (590)
T ss_dssp -------------HHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ESCC
T ss_pred -------------hhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE----EecC
Confidence 00111234778888875 4799999999998876 8999999999999999999997 4432
Q ss_pred cCccccCCHHHHHHhhcccCCCCCC-CceEEEEE
Q 043190 1034 TKRYVDFPITDILQMMGRAGRPQYD-QHGKAVIL 1066 (1492)
Q Consensus 1034 ~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l 1066 (1492)
.+...|+||+||+||.+.+ .+..++++
T Consensus 528 ------~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 528 ------NSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp ------CCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred ------CChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 3689999999999998743 23344444
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=290.78 Aligned_cols=329 Identities=16% Similarity=0.173 Sum_probs=210.1
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.|+|+|.+++..++.. +.+++++++||+|||.++...+...+..+...+++|++|+ +|+.|...++.+.+ |.++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF----NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS----CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh----CCCE
Confidence 5999999999887743 4689999999999999998888887766556799999999 99999888876655 6677
Q ss_pred EEEcCCCCcc-----hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCc--cHHHHHHHHHHHhh
Q 043190 767 VEMTGDYTPD-----LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERG--PILEVIVSRMRYIS 839 (1492)
Q Consensus 767 ~~~~g~~~~~-----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g--~~~~~i~~~l~~~~ 839 (1492)
..++|+.... .......+|+|+|++.+..-... .......++++||+||||++..... ......+..+.
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~--- 303 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA--- 303 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH---
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh---
Confidence 7776543211 12234679999999876322111 0112235789999999999854221 12222233222
Q ss_pred hccCCceEEEEEcCCCCC--hHH---HHHHhcCCcce-----------------------------------eEecC--C
Q 043190 840 SQTERAVRFIGLSTALAN--AGD---LADWLGVGEIG-----------------------------------LFNFK--P 877 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~--~~~---~~~~l~~~~~~-----------------------------------~~~~~--~ 877 (1492)
....++++||||+.. ..+ +..++...... +...- .
T Consensus 304 ---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 304 ---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp ---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred ---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 124568999999842 221 11111110000 00000 0
Q ss_pred Ccccc-----------------------------CcEE-----EEeccCCccccc-------------------------
Q 043190 878 SVRPV-----------------------------PLEV-----HIQGYPGKFYCP------------------------- 898 (1492)
Q Consensus 878 ~~r~~-----------------------------~l~~-----~~~~~~~~~~~~------------------------- 898 (1492)
...+. .+.. .+.+++......
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000 0000 000010000000
Q ss_pred -----------------------cc-cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 043190 899 -----------------------RM-NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 899 -----------------------~~-~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
.. ...+......+....+++++||||+++..++.++..|.+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~--------------- 525 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRE--------------- 525 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHT---------------
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHH---------------
Confidence 00 000011122222335688999999999999988877732
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccCCCCcEEEEecceeeeC
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNK--IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~ 1032 (1492)
..+..+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++++||+ |++
T Consensus 526 ------------------~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~----~d~ 583 (968)
T 3dmq_A 526 ------------------REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM----FDL 583 (968)
T ss_dssp ------------------TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC----SSC
T ss_pred ------------------HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE----ecC
Confidence 12677999999999999999999999998 999999999999999999999997 553
Q ss_pred ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.++..|.||+||+||.|......++.+.....
T Consensus 584 ------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 584 ------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp ------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred ------CCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 346899999999999998544445555555443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=265.76 Aligned_cols=321 Identities=15% Similarity=0.150 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|+|.+++..+. ..+.++++++|||+|||++++..+.......+..++||++| .+|+.|..+++.+.+. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~---~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAP---HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT---TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC---Cc
Confidence 59999999987653 46789999999999999998776666555445679999999 4688887777766432 45
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
++..++|+... ......+|+|+||+.+..... .....+++||+||||.+.+... .....+.. . .
T Consensus 113 ~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~-~~~~~l~~-------l-~ 176 (500)
T 1z63_A 113 RFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQT-KIFKAVKE-------L-K 176 (500)
T ss_dssp CEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTS-HHHHHHHT-------S-C
T ss_pred eEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhH-HHHHHHHh-------h-c
Confidence 77777776532 233467999999998743322 1123678999999999864322 22222221 1 2
Q ss_pred ceEEEEEcCCCCC--hHHHH---HHhcCCcc-------------------------------eeEec-CCC---ccccCc
Q 043190 845 AVRFIGLSTALAN--AGDLA---DWLGVGEI-------------------------------GLFNF-KPS---VRPVPL 884 (1492)
Q Consensus 845 ~~~ii~lSATl~~--~~~~~---~~l~~~~~-------------------------------~~~~~-~~~---~r~~~l 884 (1492)
..+.+++|||+.. ..++. .|+..... .+... ... ....|-
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 4577999999843 33322 22221100 00000 000 000110
Q ss_pred E--EEE-eccCCc---cccccc-------c-------------------------------------ccC-hhHHHHHhh
Q 043190 885 E--VHI-QGYPGK---FYCPRM-------N-------------------------------------SMN-KPAYAAICT 913 (1492)
Q Consensus 885 ~--~~~-~~~~~~---~~~~~~-------~-------------------------------------~~~-~~~~~~l~~ 913 (1492)
. ..+ ...... .|.... . ..+ ..+...+..
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 0 000 000000 000000 0 000 001111222
Q ss_pred -cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 914 -HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 914 -~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
..++.++||||+++..+..++..|... .+..+..+||+++..+|..
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~g~~~~~~R~~ 383 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKE---------------------------------LNTEVPFLYGELSKKERDD 383 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHH---------------------------------HTCCCCEEETTSCHHHHHH
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHh---------------------------------hCCCeEEEECCCCHHHHHH
Confidence 246789999999999888877666331 2567889999999999999
Q ss_pred HHHHHhcC-Cce-EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 993 VEELFANN-KIQ-VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 993 v~~~f~~g-~~~-vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
+++.|++| ..+ +|+||+++++|+|+|++++||. |++ +.++..+.||+||++|.|..+...++.++..+
T Consensus 384 ~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d~------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 384 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp HHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SSC------CSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE----eCC------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999998 555 7999999999999999999997 443 23577899999999999987777778787766
Q ss_pred c
Q 043190 1071 K 1071 (1492)
Q Consensus 1071 ~ 1071 (1492)
.
T Consensus 454 t 454 (500)
T 1z63_A 454 T 454 (500)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=281.87 Aligned_cols=249 Identities=26% Similarity=0.376 Sum_probs=174.8
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEee---------CCc------hhHHHHHhh-
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGIS---------EPN------FAARNELLS- 67 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~---------~~~------~~~~~~~~~- 67 (1492)
.+.++|+|+||||+||..++++|++......+.++..++||+|+.++++... ... +......+.
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 3568999999999999999999997432334666778899999987765321 000 000000000
Q ss_pred ----------------------------HHHHHHHHHHH--hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCC
Q 043190 68 ----------------------------EICYKKVVDSL--RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNND 117 (1492)
Q Consensus 68 ----------------------------~~~~~~~~~~~--~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 117 (1492)
......+.+.+ .++.++||||+||+.|+.+++.|.... + .
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~--------~--~ 369 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD--------F--N 369 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSC--------C--C
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC--------C--C
Confidence 01111233332 234599999999999999998875310 0 0
Q ss_pred CchhhHHHH----HHHhhc--------CchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCC
Q 043190 118 THPQLSLIK----KDVMKS--------RNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLP 185 (1492)
Q Consensus 118 ~~~~~~~~~----~~~~~~--------~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp 185 (1492)
...+...+. +..... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 370 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP 449 (1010)
T 2xgj_A 370 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 449 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCC
T ss_pred ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCC
Confidence 001111111 111100 12457788899999999999999999999999999999999999999999999
Q ss_pred cEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCc-cHHHHHHHh-cCCCccccchhHhHHHHHH
Q 043190 186 AHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD-KLAYYLRLL-TSQLPIESQFISSLKDNLN 262 (1492)
Q Consensus 186 ~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~-~~~~~~~~~-~~~~~ies~l~~~l~~~l~ 262 (1492)
+++|||++...||+... +++..+|.||+|||||.|.|..|.||+++++. +...+.+++ +...|++|.+.......+|
T Consensus 450 ~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~iln 529 (1010)
T 2xgj_A 450 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 529 (1010)
T ss_dssp BSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHHH
T ss_pred CceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHHHHHH
Confidence 99999999988986432 45677899999999999999899999999865 455555554 4456899998765444444
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=278.60 Aligned_cols=306 Identities=16% Similarity=0.211 Sum_probs=210.9
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 83 (1492)
++.|+|+||||+ |.+++++|++..+ ++....|+.|++.+|.......+.. .....+.+.. ..+++
T Consensus 239 ~~~~iIl~SAT~-~~~~l~~~~~~~~-----vi~v~gr~~pv~~~~~~~~~~~~~~-------~~l~~l~~~~~~~~~g~ 305 (773)
T 2xau_A 239 PDLKIIIMSATL-DAEKFQRYFNDAP-----LLAVPGRTYPVELYYTPEFQRDYLD-------SAIRTVLQIHATEEAGD 305 (773)
T ss_dssp TTCEEEEEESCS-CCHHHHHHTTSCC-----EEECCCCCCCEEEECCSSCCSCHHH-------HHHHHHHHHHHHSCSCE
T ss_pred CCceEEEEeccc-cHHHHHHHhcCCC-----cccccCcccceEEEEecCCchhHHH-------HHHHHHHHHHHhcCCCC
Confidence 468999999999 7889999997542 3455677788877665444332211 1112222222 35789
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+++++++.+++.|.+..... ... .......+..|||+|++++|..+++.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l-----------------~~~---------~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQL-----------------VRE---------EGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHH-----------------HHH---------HCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----------------ccc---------ccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 9999999999999999987643210 000 00013358999999999999999999
Q ss_pred Hh-----CCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceE
Q 043190 164 FS-----EGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 164 f~-----~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
|+ +|.++|||||+++++|||+|++++||+. ...||+..| +.+..+|.||+|||||. ..|.|
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~ 436 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKC 436 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEE
Confidence 99 9999999999999999999999999983 456888766 44667799999999998 47999
Q ss_pred EEEeCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCc
Q 043190 228 IIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADP 307 (1492)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~ 307 (1492)
+.+++..+... .+... +...-+...|...++...++|. .+..+ | .+.. .|
T Consensus 437 ~~l~~~~~~~~--~l~~~--~~pEi~r~~L~~~~L~l~~~gi-~~~~~--------f---~~~~--------------~p 486 (773)
T 2xau_A 437 FRLYTEEAFQK--ELIEQ--SYPEILRSNLSSTVLELKKLGI-DDLVH--------F---DFMD--------------PP 486 (773)
T ss_dssp EESSCHHHHHH--TSCSS--CCCGGGGSCCHHHHHHHHHTTC-CCGGG--------C---CCSS--------------CC
T ss_pred EEEecHHHhcc--ccccc--CCCccccCcHHHHHHHHHHcCC-CChhh--------c---cccC--------------CC
Confidence 99997554321 12221 2222334455555555555442 11110 1 0111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCC
Q 043190 308 SLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENI 387 (1492)
Q Consensus 308 ~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i 387 (1492)
..+.+..+++.|.+.|+|+.+ + .+|++|+.||.+|++|..++++......+ +...++.++|... +.++
T Consensus 487 -----~~~~i~~a~~~L~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~-c~~~~l~i~a~ls-~~~~ 554 (773)
T 2xau_A 487 -----APETMMRALEELNYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQ-CSQEILTIVAMLS-VPNV 554 (773)
T ss_dssp -----CHHHHHHHHHHHHHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGT-CHHHHHHHHHHHT-SCCC
T ss_pred -----cHHHHHHHHHHHHHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccC-chhHHHHHHHhcc-cCCc
Confidence 146788999999999999633 3 59999999999999999999999865544 5667777776655 4566
Q ss_pred ccchhHHH
Q 043190 388 VVRDEEQN 395 (1492)
Q Consensus 388 ~~R~~e~~ 395 (1492)
.+++.+..
T Consensus 555 f~~~~~~~ 562 (773)
T 2xau_A 555 FIRPTKDK 562 (773)
T ss_dssp BCCCTTCH
T ss_pred ccCChHHH
Confidence 66655433
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=244.51 Aligned_cols=179 Identities=19% Similarity=0.233 Sum_probs=139.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-----CCCceEEEEcccHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-----QSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-----~~~~~~l~i~P~r~La 747 (1492)
+..+..+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|+++.+.. ..+.+++|++|+++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La 139 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 139 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHH
Confidence 3334444433 99999999999999998 57899999999999999999999987754 2367899999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~ 823 (1492)
.|+++.+++.+... +..+..++|+....... ..+++|+|+||+++...+++.. ...+++++++|+||||++.+ .
T Consensus 140 ~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~l~~lViDEah~l~~~~ 217 (262)
T 3ly5_A 140 MQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP-GFMYKNLQCLVIDEADRILDVG 217 (262)
T ss_dssp HHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-TCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-CcccccCCEEEEcChHHHhhhh
Confidence 99999998865544 88888999877644322 2468999999999988776632 23478899999999998754 4
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHH
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLAD 863 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~ 863 (1492)
++..++.++.. .+...|++++|||+++ .+++++
T Consensus 218 ~~~~l~~i~~~-------~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 218 FEEELKQIIKL-------LPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp CHHHHHHHHHH-------SCSSSEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHh-------CCCCCeEEEEEecCCHHHHHHHH
Confidence 66666655543 3457899999999986 344444
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=242.77 Aligned_cols=348 Identities=16% Similarity=0.167 Sum_probs=221.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|....-.+. .|+ |..+.||+|||+++.+|++-.... +..+.+++|+..||.|-++.+.. +...+|+
T Consensus 73 g~r-~~dvQligg~~L~-~G~--iaEM~TGEGKTLva~lp~~lnAL~--G~~vhVvT~ndyLA~rdae~m~~-l~~~Lgl 145 (822)
T 3jux_A 73 GMR-PFDVQVMGGIALH-EGK--VAEMKTGEGKTLAATMPIYLNALI--GKGVHLVTVNDYLARRDALWMGP-VYLFLGL 145 (822)
T ss_dssp SCC-CCHHHHHHHHHHH-TTC--EEECCTTSCHHHHTHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred CCC-CcHHHHHHHHHHh-CCC--hhhccCCCCccHHHHHHHHHHHhc--CCceEEEeccHHHHHhHHHHHHH-HHHHhCC
Confidence 665 7888888777664 554 889999999999999998754333 78899999999999998887766 5556699
Q ss_pred EEEEEcCC--------------------------------------------------CCcc-hhccCCCcEEEECchhh
Q 043190 765 EMVEMTGD--------------------------------------------------YTPD-LMALLSADIIISTPEKW 793 (1492)
Q Consensus 765 ~v~~~~g~--------------------------------------------------~~~~-~~~~~~~~Iiv~Tpe~l 793 (1492)
+|+++..+ .+.. .+..-.+||.++|...|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 99988772 1111 11112579999999875
Q ss_pred --hHhhhccc---CccccCcccEEEEeccccc--CCCCccHH--------HHHHHHHHHhhhcc----------------
Q 043190 794 --DGISRNWH---SRNYVKKVGLMILDEIHLL--GAERGPIL--------EVIVSRMRYISSQT---------------- 842 (1492)
Q Consensus 794 --~~l~~~~~---~~~~l~~i~liViDEaH~l--~~~~g~~~--------~~i~~~l~~~~~~~---------------- 842 (1492)
+.|-.+.. .....+.+.+.||||+|.+ ++.+.|.+ ..+..++..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 44443321 2334567899999999943 22221110 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 043190 843 -------------------------------------------------------------------------------- 842 (1492)
Q Consensus 843 -------------------------------------------------------------------------------- 842 (1492)
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence
Q ss_pred ---------------------CCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc
Q 043190 843 ---------------------ERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 843 ---------------------~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
..-.++.|||+|... .+++.+..+.. ++.. |..+|..-... +...+...
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~I-Ptnkp~~R~d~----~d~vy~t~- 456 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVI-PTHKPMIRKDH----DDLVFRTQ- 456 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEEC-CCSSCCCCEEC----CCEEESSH-
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEE-CCCCCcceeec----CcEEEecH-
Confidence 001458888888865 34455555443 2222 23333211110 11111111
Q ss_pred cccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 901 NSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 901 ~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
......+...+.. +..+.|+||||+|+..++.++..|.+ .+..+.
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~----------------------------------~Gi~~~ 502 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK----------------------------------KGIPHQ 502 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT----------------------------------TTCCCE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH----------------------------------CCCCEE
Confidence 1111122333332 24578999999999999999987743 256788
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC--------CcEEEEecceeeeCccCccccCCHHHHHHhhcc
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP--------AHLVIIKGTEYYDGKTKRYVDFPITDILQMMGR 1051 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip--------~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GR 1051 (1492)
.+||+....+|..+.++++.| .|+|||++++||+|++ +..+||+ |+ .+-+...|.||+||
T Consensus 503 vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te------~Pes~r~y~qriGR 570 (822)
T 3jux_A 503 VLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TE------RHESRRIDNQLRGR 570 (822)
T ss_dssp EECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SS------CCSSHHHHHHHHTT
T ss_pred EeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cC------CCCCHHHHHHhhCc
Confidence 999998777777778888777 5999999999999998 6679997 32 22358899999999
Q ss_pred cCCCCCCCceEEEEEecCCcHH-------HHHHhh-----cCCCceeecccccchhh
Q 043190 1052 AGRPQYDQHGKAVILVHEPKKS-------FYKKFL-----YEPFPVESSLRDQLHDH 1096 (1492)
Q Consensus 1052 agR~g~~~~G~~i~l~~~~~~~-------~~~~~l-----~~~~pies~l~~~l~~~ 1096 (1492)
+||.| .+|.++.+++..+.- .+.+++ .+..|+++.+.....+.
T Consensus 571 TGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~ 625 (822)
T 3jux_A 571 AGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIEN 625 (822)
T ss_dssp SSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHH
T ss_pred cccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHH
Confidence 99998 899999999877631 222222 34567777766554443
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-24 Score=281.05 Aligned_cols=273 Identities=25% Similarity=0.370 Sum_probs=185.1
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC---------Cc-h-----hHHHHHh--
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE---------PN-F-----AARNELL-- 66 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~---------~~-~-----~~~~~~~-- 66 (1492)
.++++|+|+||||+||..++++|++......+.++..++||+|+..+++.... .. + ......+
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 46789999999999999999999986545567778889999999776543211 00 0 0000000
Q ss_pred ----------------------------hHHHHHHHHHHH--hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCc-----
Q 043190 67 ----------------------------SEICYKKVVDSL--RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDL----- 111 (1492)
Q Consensus 67 ----------------------------~~~~~~~~~~~~--~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~----- 111 (1492)
....+ .++..+ .+++++||||+|++.|+.++..|..........
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY-KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ---------------------------CHHHHH-HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred hhcccccccccccccccccccccccccchhHHH-HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 11112 222222 345699999999999999999886543321110
Q ss_pred cccCCCCchhhHHHHHHHh-hcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEE
Q 043190 112 EVFNNDTHPQLSLIKKDVM-KSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVV 190 (1492)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vV 190 (1492)
..+... ...+..... ......+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 477 ~~~~~~----~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~V 552 (1108)
T 3l9o_A 477 KIFNNA----IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 552 (1108)
T ss_dssp HHGGGS----CTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEE
T ss_pred HHHHHH----HhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEE
Confidence 000000 001111100 011245778889999999999999999999999999999999999999999999999999
Q ss_pred EeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCcc-HHHHHHHhc-CCCccccchhHhHHHHHHHHHHh
Q 043190 191 IKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-LAYYLRLLT-SQLPIESQFISSLKDNLNAEVAL 267 (1492)
Q Consensus 191 I~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~~~~~~~~~-~~~~ies~l~~~l~~~l~~ei~~ 267 (1492)
|++..+|++... +.+..+|+||+|||||.|.|..|.|++++++.. ...+.+++. .+.|+.|++.......+|. +..
T Consensus 553 I~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl-l~~ 631 (1108)
T 3l9o_A 553 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL-MRV 631 (1108)
T ss_dssp ESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHS
T ss_pred EecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHH-HHh
Confidence 999888987642 235567999999999999999999999998763 444555554 4578999987755544443 344
Q ss_pred CcccCHHHHHHHhhhhhhh
Q 043190 268 GTVTNVKEACAWLGYTYLS 286 (1492)
Q Consensus 268 ~~i~~~~~~~~~~~~t~~~ 286 (1492)
+.+ +. .+++..+|.-
T Consensus 632 ~~~-~~---~~~l~~sf~~ 646 (1108)
T 3l9o_A 632 EGI-SP---EFMLEHSFFQ 646 (1108)
T ss_dssp TTC-CH---HHHHHHSSHH
T ss_pred cCC-CH---HHHHHHHHHH
Confidence 433 22 4555666643
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=233.91 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=140.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~ 750 (1492)
|+....+.+. ||..|+|+|.++++.++.+ ++|++++||||||||++|++|++..+... .+.++||++|||+||.|+
T Consensus 99 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~ 178 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT 178 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHH
Confidence 4455555554 9999999999999999843 48999999999999999999999987653 345899999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
++.+........+..+....|+..........++|+|+||+++..++.+. ....+++++++||||||.+.+..| +..
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~~~~--~~~ 255 (300)
T 3fmo_B 179 GKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQG--HQD 255 (300)
T ss_dssp HHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHHSTT--HHH
T ss_pred HHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhhccC--cHH
Confidence 99988754444467888888877655555567899999999998877642 223478999999999998754222 222
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
.+.+ +....+...|++++|||+++ ...++..+
T Consensus 256 ~~~~---i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 256 QSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHH---HHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHH---HHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 2222 22334568999999999987 34455444
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-23 Score=228.68 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=139.0
Q ss_pred CchhHhhh--cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc------CCCceEEEEcccHHHH
Q 043190 676 GNNIYEAL--YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT------QSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 676 ~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~------~~~~~~l~i~P~r~La 747 (1492)
+....+.+ +||..|+|+|.++++.++ .+++++++||||||||++|++|++..+.. ..+++++|++|+++|+
T Consensus 37 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~ 115 (242)
T 3fe2_A 37 PANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA 115 (242)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHH
Confidence 33444443 389999999999999998 67899999999999999999999988764 2467899999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~ 823 (1492)
.|+++.+.+.... .+.++..++|+...... ...+++|+|+||+++..++.+. ...+++++++|+||||++.+ .
T Consensus 116 ~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~~~ 192 (242)
T 3fe2_A 116 QQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLDMG 192 (242)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhhhC
Confidence 9999998875444 48899999988765432 2236899999999998887753 33578999999999998753 4
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++..++.++.+ .+...|++++|||+++ ...++..+
T Consensus 193 ~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 193 FEPQIRKIVDQ-------IRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp CHHHHHHHHTT-------SCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHh-------CCccceEEEEEeecCHHHHHHHHHH
Confidence 55555555433 3467899999999986 34444433
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=258.08 Aligned_cols=351 Identities=14% Similarity=0.186 Sum_probs=195.2
Q ss_pred CCCHHHHHHHHhhhc-------------CCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH-------------TDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~-------------~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.|+|+|.+|++.++. .+++.++.++||||||+++ +++++.+... ...++||++|+++|+.|..+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998764 1368999999999999998 5566665532 246999999999999999888
Q ss_pred HHHHhhhccCCEEEEEcCCCCc-ch-hc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHH
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTP-DL-MA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~-~~-~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~ 829 (1492)
+.. +... . +.|.... .. .. ..+.+|+|+||+++..++........++...+||+||||+... +..
T Consensus 350 f~~-f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~-- 418 (1038)
T 2w00_A 350 YQR-FSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEA-- 418 (1038)
T ss_dssp HHT-TSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHH--
T ss_pred HHH-hccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHH--
Confidence 765 3221 1 1222111 11 11 2468999999999987765422122355778999999997631 212
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCChH------HHHHHhcCCcceeEecCC---CccccCcEEEEeccCCcc-----
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALANAG------DLADWLGVGEIGLFNFKP---SVRPVPLEVHIQGYPGKF----- 895 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~~~------~~~~~l~~~~~~~~~~~~---~~r~~~l~~~~~~~~~~~----- 895 (1492)
...+... . ++.+++|+|||+.... ....++|..- ..+.+.. ..--.|+.+.........
T Consensus 419 --~~~I~~~---~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i-~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 419 --QKNLKKK---F-KRYYQFGFTGTPIFPENALGSETTASVFGREL-HSYVITDAIRDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp --HHHHHHH---C-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEE-EEECHHHHHHHTSSCCEEEEECCCCGGGHHHHT
T ss_pred --HHHHHHh---C-CcccEEEEeCCccccccchhhhHHHHHhCCee-EeecHHHHHhCCCcCCeEEEEEeccchhhhccc
Confidence 2222221 2 3579999999987532 3445555321 1111000 000112222221110000
Q ss_pred ------cc--ccccc-cC----hhHHHHHhh----c-------CCCCCeeEEecChHHHHHHHHHHHHHHhcC-----C-
Q 043190 896 ------YC--PRMNS-MN----KPAYAAICT----H-------SPTKPVLIFVSSRRQTRLTALDLIQFAASD-----E- 945 (1492)
Q Consensus 896 ------~~--~~~~~-~~----~~~~~~l~~----~-------~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~-----~- 945 (1492)
+. ..... .. ......+.. . ..+.++||||+|+..|..++..|.+..... .
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 00 00000 00 011111211 1 134579999999999999999887764210 0
Q ss_pred C-Cc--ccCCCChHHHHHHHhhcC---------c----HHHHHHh-----ccceEeecC-CCCHHHHHHHHHHHhcCCce
Q 043190 946 T-PR--QFLGMPEEDLQMVLSQVT---------D----QNLRQTL-----QFGIGLHHA-GLNDKDRSLVEELFANNKIQ 1003 (1492)
Q Consensus 946 ~-~~--~~~~~~~~~~~~~~~~~~---------~----~~l~~~~-----~~~v~~~h~-~l~~~~R~~v~~~f~~g~~~ 1003 (1492)
. .. ........+-......+. + +.+...+ -++-.+.+. +-...+|..+.+.|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 0 00 000000000000000000 0 0000000 000000000 00123588999999999999
Q ss_pred EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC--CceEEEEEec
Q 043190 1004 VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD--QHGKAVILVH 1068 (1492)
Q Consensus 1004 vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~--~~G~~i~l~~ 1068 (1492)
|||+|+++.+|+|+|.+.+++ +|. ++....|+||+||+||.+.+ ..|.++-+..
T Consensus 652 ILIvvd~lltGfDiP~l~tly-----lDk------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTLNTLF-----VDK------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTEEEEE-----EES------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccccEEE-----Ecc------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999997654 342 34567899999999998743 2366665554
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=223.45 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=131.6
Q ss_pred hhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHH
Q 043190 678 NIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 678 ~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~ 748 (1492)
+..+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.
T Consensus 30 ~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~ 108 (228)
T 3iuy_A 30 DLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELAL 108 (228)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHH
Confidence 3444433 99999999999999998 789999999999999999999999877532 4788999999999999
Q ss_pred HHHHHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 749 q~~~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
|+++.+.+. ... +.++..+.|+..... ....+++|+|+||+++..++.+. ...+++++++|+||||++.+ ++
T Consensus 109 q~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~ 184 (228)
T 3iuy_A 109 HVEAECSKY-SYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN--SVNLRSITYLVIDEADKMLDMEF 184 (228)
T ss_dssp HHHHHHHHH-CCT-TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT--CCCCTTCCEEEECCHHHHHHTTC
T ss_pred HHHHHHHHh-ccc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcCcccceEEEEECHHHHhccch
Confidence 999998874 333 778888888765432 22356899999999998877653 33478999999999998753 45
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHH
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLAD 863 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~ 863 (1492)
+..+..++.. ...+.|++++|||+++ ..+++.
T Consensus 185 ~~~~~~i~~~-------~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 185 EPQIRKILLD-------VRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp HHHHHHHHHH-------SCSSCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHh-------CCcCCeEEEEEeeCCHHHHHHHH
Confidence 5566655443 3457899999999986 234443
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=268.26 Aligned_cols=244 Identities=26% Similarity=0.381 Sum_probs=173.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEe-------eCC-ch-----hHHHHH-----
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-------SEP-NF-----AARNEL----- 65 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~-------~~~-~~-----~~~~~~----- 65 (1492)
.++++|+|+||||+||..++++|++......++++...+||+|+.+++... ... .+ ......
T Consensus 175 l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 356899999999999999999999865456788899999999998766421 000 00 000000
Q ss_pred ----------------------------------------------------------------hhHHHHHHHHHHHh--
Q 043190 66 ----------------------------------------------------------------LSEICYKKVVDSLR-- 79 (1492)
Q Consensus 66 ----------------------------------------------------------------~~~~~~~~~~~~~~-- 79 (1492)
..+..+..+.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 00111233444443
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHH----HHh--------hcCchHHHHHhcccEEE
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKK----DVM--------KSRNKDLIELFGLAVGV 147 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~~~~~l~~~~~~gv~~ 147 (1492)
+..++||||+||++|+.++..|.+... ....+...+.. ... ......+..++..||++
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~----------~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 404 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINF----------CNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAV 404 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCC----------CCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCC----------CCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeee
Confidence 346999999999999999988753110 00011111111 111 11134578889999999
Q ss_pred EcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccce
Q 043190 148 HHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 148 hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
|||||++.+|..+++.|++|.++|||||+++++|||+|+++||+.+...||+... +.+..+|.||+|||||.|.|..|.
T Consensus 405 ~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 405 HHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceE
Confidence 9999999999999999999999999999999999999999999998888886432 235567999999999999999999
Q ss_pred EEEEeC--CccHHHHHHHh-cCCCccccchhHhH
Q 043190 227 GIIITS--HDKLAYYLRLL-TSQLPIESQFISSL 257 (1492)
Q Consensus 227 ~i~~~~--~~~~~~~~~~~-~~~~~ies~l~~~l 257 (1492)
+++++. ..+...+.+++ +.+.++.|++....
T Consensus 485 vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~y 518 (997)
T 4a4z_A 485 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTY 518 (997)
T ss_dssp EEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCH
T ss_pred EEEecCCCcchHHHHHHHhcCCCcccccccccch
Confidence 999994 33444555443 45668888775543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=223.44 Aligned_cols=178 Identities=18% Similarity=0.247 Sum_probs=134.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~ 750 (1492)
+.....+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.|+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHH
Confidence 3444444444 99999999999999998 688999999999999999999999988642 456899999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcc----hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCc
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPD----LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERG 825 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g 825 (1492)
++++.+.+... +.++..++|+.... .....+++|+|+||+++..++++......+++++++|+||||++.+ .+.
T Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~ 193 (245)
T 3dkp_A 115 HRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT 193 (245)
T ss_dssp HHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--
T ss_pred HHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc
Confidence 99998855443 77777776643211 1223467999999999988887754445688999999999998854 223
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...+.+...++.. ...+.|++++|||+++
T Consensus 194 ~~~~~~~~i~~~~---~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 194 GFRDQLASIFLAC---TSHKVRRAMFSATFAY 222 (245)
T ss_dssp CHHHHHHHHHHHC---CCTTCEEEEEESSCCH
T ss_pred cHHHHHHHHHHhc---CCCCcEEEEEeccCCH
Confidence 3344444333322 2457899999999975
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=213.64 Aligned_cols=172 Identities=16% Similarity=0.228 Sum_probs=133.9
Q ss_pred CchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHH
Q 043190 676 GNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 676 ~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~ 752 (1492)
++...+.+. ||..|+|+|.++++.++ .++++++++|||||||++|++|++..+... .+.+++|++|+++|+.|+++
T Consensus 11 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 89 (206)
T 1vec_A 11 KRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 89 (206)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHH
Confidence 334444443 89999999999999998 679999999999999999999999887543 35689999999999999999
Q ss_pred HHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 753 DWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 753 ~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
.+.+......+.++..++|+...... ...+++|+|+||+++...+.+. ...+++++++|+||||++.+ .++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~l 167 (206)
T 1vec_A 90 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--VAKVDHVQMIVLDEADKLLSQDFVQIM 167 (206)
T ss_dssp HHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC--CcCcccCCEEEEEChHHhHhhCcHHHH
Confidence 99875544436788888887664321 2346899999999998777653 33478899999999998754 444444
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+.++.. .+.+.+++++|||+++
T Consensus 168 ~~i~~~-------~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 168 EDIILT-------LPKNRQILLYSATFPL 189 (206)
T ss_dssp HHHHHH-------SCTTCEEEEEESCCCH
T ss_pred HHHHHh-------CCccceEEEEEeeCCH
Confidence 444332 3457899999999975
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=219.01 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=131.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+|+|.++++.++ .++++++++|||||||++|.+|++..+.. ..+.+++|++|+++|+.|+++.+.+......+
T Consensus 43 g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 43 GFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999998 68999999999999999999999988754 34679999999999999999999875544447
Q ss_pred CEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC--CccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--RGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--~g~~~~~i~~~l~~~~ 839 (1492)
.++..+.|+..... ....+++|+|+||+++..+++.. ...+++++++|+||||++.+. ++..+..++..
T Consensus 122 ~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~----- 194 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD--YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS----- 194 (230)
T ss_dssp CCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT--SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH-----
T ss_pred ceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC--CcccccCCEEEeCCchHhhcCcchHHHHHHHHHh-----
Confidence 88999999876432 33457899999999998877653 334788999999999987542 44444444432
Q ss_pred hccCCceEEEEEcCCCCC
Q 043190 840 SQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~ 857 (1492)
.+...|++++|||+++
T Consensus 195 --~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 195 --LPASKQMLAVSATYPE 210 (230)
T ss_dssp --SCSSCEEEEEESCCCH
T ss_pred --CCCCCeEEEEEeccCH
Confidence 3457899999999875
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=220.10 Aligned_cols=174 Identities=14% Similarity=0.199 Sum_probs=134.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----------CCceEEEEcccHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----------SDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----------~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
||..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.|+++++
T Consensus 42 g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 89999999999999998 689999999999999999999999887532 2468999999999999999998
Q ss_pred HHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHH
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEV 830 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~ 830 (1492)
.+.. ...+.++..+.|+...... ...+++|+|+||+++..++.+. ...+++++++|+||||++. ..++..+..
T Consensus 121 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFS-LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHH-TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHh-ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 8744 3347888888887654322 2346899999999998887763 2347889999999999774 356666666
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++.+++. ....+.|++++|||+++ ..+++..+
T Consensus 198 i~~~~~~---~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 198 IIEESNM---PSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp HHHSSCC---CCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred HHhhccC---CCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 6553210 11126899999999976 34444433
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=211.67 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=136.3
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~ 751 (1492)
+++...+.+. ||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+.... +.+++|++|+++|+.|++
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 99 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 99 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHH
Confidence 3334444443 89999999999999998 6789999999999999999999999876543 459999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~ 827 (1492)
+++.+......+.++..++|+....... ...++|+|+||+++..++++. ...+++++++|+||||++.+..+
T Consensus 100 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~-- 175 (220)
T 1t6n_A 100 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQLD-- 175 (220)
T ss_dssp HHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEESHHHHHSSHH--
T ss_pred HHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC--CCCcccCCEEEEcCHHHHhcccC--
Confidence 9988754433378899999987643221 135699999999998887763 33478999999999998754211
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHH
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADW 864 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~ 864 (1492)
+...+. .+....+.+.|++++|||+++ .+++++.
T Consensus 176 ~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 176 MRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp HHHHHH---HHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cHHHHH---HHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 222222 222334567899999999987 3555543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=240.75 Aligned_cols=324 Identities=17% Similarity=0.185 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHhhh--------cCCCcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILY--------HTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~--------~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~La~q~~~~~ 754 (1492)
.|+|+|.+++..++ ..+...|++.+||+|||++++..+...+...+ ..++||++|+ +|+.|..+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999998764 35568999999999999999888777665432 3569999997 7888877777
Q ss_pred HHHhhhccCCEEEEEcCCCCcchh-----c------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLM-----A------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~-----~------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
.+.+.. ...+..+.|+...... . ....+|+|+|++.+...... .....+++||+||||.+.+.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH----hhcCCccEEEEECceecCCh
Confidence 765433 3455555554322110 0 12478999999987543322 11246789999999998543
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hH------------------HHHHHhcCC-------c-------
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN--AG------------------DLADWLGVG-------E------- 869 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~------------------~~~~~l~~~-------~------- 869 (1492)
..... ..+..+ ...+.++||||+-. .. .+.+++..+ .
T Consensus 208 ~~~~~-~al~~l--------~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 208 DNQTY-LALNSM--------NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp CHHHH-HHHHHH--------CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred hhHHH-HHHHhc--------ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 22222 222222 13467999999732 11 111111100 0
Q ss_pred --------------ceeEecCC----CccccCcEEEE-eccCCc---cccc-------------------cc--------
Q 043190 870 --------------IGLFNFKP----SVRPVPLEVHI-QGYPGK---FYCP-------------------RM-------- 900 (1492)
Q Consensus 870 --------------~~~~~~~~----~~r~~~l~~~~-~~~~~~---~~~~-------------------~~-------- 900 (1492)
..+..-.. ..-|...+..+ ...... .|.. ..
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 00000000 00010111000 000000 0000 00
Q ss_pred --------------------------------c----ccCh--hHHHHHhh---cCCCCCeeEEecChHHHHHHHHHHHH
Q 043190 901 --------------------------------N----SMNK--PAYAAICT---HSPTKPVLIFVSSRRQTRLTALDLIQ 939 (1492)
Q Consensus 901 --------------------------------~----~~~~--~~~~~l~~---~~~~~~~LIF~~s~~~~~~~a~~L~~ 939 (1492)
. .... .....+.. ...+.++|||++.+..+..++..|..
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 0 0000 01111111 12467899999999988877765532
Q ss_pred HHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEeccccccccC
Q 043190 940 FAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQ---VLVCTSTLAWGVN 1016 (1492)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vLvaT~~l~~Gvd 1016 (1492)
.+..+..+||+++..+|..+++.|++|... +|++|.++++|+|
T Consensus 439 ----------------------------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 439 ----------------------------------RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp ----------------------------------HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred ----------------------------------CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 256788999999999999999999998754 8999999999999
Q ss_pred CCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1017 LPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1017 ip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++++++||+ ||+ +.++..+.|++||++|.|..+...+|.++....
T Consensus 485 l~~a~~Vi~----~d~------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 485 LIGANRLVM----FDP------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CTTEEEEEE----CSC------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccCCEEEE----ECC------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999998 553 346899999999999999877778888877664
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=215.20 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=127.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhcc-
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQL- 762 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~- 762 (1492)
||..|+|+|.++++.++ +++++++++|||||||++|.+|+++.+... .+.+++|++|+++|+.|+++.+.+......
T Consensus 23 g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp TCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 89999999999999998 678999999999999999999999987653 357899999999999999999887543221
Q ss_pred --CCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 763 --GKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 763 --g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
+..+..+.|+....... ..+++|+|+||+++..++++. ...+++++++|+||||.+.+ .++..+..++.
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~--- 176 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--ALDVHTAHILVVDEADLMLDMGFITDVDQIAA--- 176 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHH---
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC--CCCcCcceEEEEcCchHHhhhChHHHHHHHHH---
Confidence 57788888876543221 236799999999998877752 33478899999999998753 34333433332
Q ss_pred HhhhccCCceEEEEEcCCCCC
Q 043190 837 YISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..+...|++++|||+++
T Consensus 177 ----~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 177 ----RMPKDLQMLVFSATIPE 193 (219)
T ss_dssp ----TSCTTCEEEEEESCCCG
T ss_pred ----hCCcccEEEEEecCCCH
Confidence 33457899999999976
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=213.48 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=130.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+. ||..|+|+|.++++.++ .++++++++|||||||++|.+|++..+... .+.+++|++|+++|+.|++
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHH
Confidence 3334444443 89999999999999998 678999999999999999999999987543 4579999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
+.+.+.... .+.++..++|+..... ....+++|+|+||+++...+.+. ...+++++++|+||||++.+ .++..+
T Consensus 100 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~l 176 (224)
T 1qde_A 100 KVVMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLSSGFKEQI 176 (224)
T ss_dssp HHHHHHTTT-SCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHhcc-cCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC--CcchhhCcEEEEcChhHHhhhhhHHHH
Confidence 999874443 4888888888765332 23346899999999987777653 34478899999999998743 344444
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..++.. .+...|++++|||+++
T Consensus 177 ~~i~~~-------~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 177 YQIFTL-------LPPTTQVVLLSATMPN 198 (224)
T ss_dssp HHHHHH-------SCTTCEEEEEESSCCH
T ss_pred HHHHHh-------CCccCeEEEEEeecCH
Confidence 443332 3457899999999987
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=219.04 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=134.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+++|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.|+++.+.+... ..+
T Consensus 62 g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-~~~ 139 (249)
T 3ber_A 62 GWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS-SIG 139 (249)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG-GGT
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc-cCC
Confidence 99999999999999998 789999999999999999999999877654 356899999999999999999987444 448
Q ss_pred CEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~ 839 (1492)
.++..+.|+...... ...+++|+|+||+++...+.+.. ...+++++++|+||||++.+ +++..+..++.
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~------ 212 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNMDFETEVDKILK------ 212 (249)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH------
T ss_pred eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CcCccccCEEEEcChhhhhccChHHHHHHHHH------
Confidence 899999988664322 23578999999999987776532 23478899999999997743 45545444443
Q ss_pred hccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 840 SQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
..+...+++++|||+++ ..++++.+
T Consensus 213 -~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 213 -VIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp -SSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred -hCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 23457899999999976 34444443
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=216.98 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=132.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-----CCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-----QSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-----~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
||..|+|+|.++++.++ .++++++++|||||||++|++|++..+.. .++.+++|++|+++|+.|+++.+.+..
T Consensus 44 ~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~- 121 (236)
T 2pl3_A 44 QYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG- 121 (236)
T ss_dssp TCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh-
Confidence 89999999999999998 78999999999999999999999987643 246789999999999999999998744
Q ss_pred hccCCEEEEEcCCCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
...+.++..++|+.... .....+++|+|+||+++...+.+.. ...+.+++++|+||||++.+ +++..+..++.
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~--- 197 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV-SFHATDLQMLVLDEADRILDMGFADTMNAVIE--- 197 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS-SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH---
T ss_pred CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC-CcccccccEEEEeChHHHhcCCcHHHHHHHHH---
Confidence 33478899998876543 2334578999999999977765421 23467899999999997743 44444444433
Q ss_pred HhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 837 YISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
..+...+++++|||+++ ..++++.+
T Consensus 198 ----~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 198 ----NLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp ----TSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred ----hCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 23457899999999976 44555543
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=215.60 Aligned_cols=178 Identities=15% Similarity=0.225 Sum_probs=131.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+. ||..|+|+|.++++.++ .+++++++||||||||++|.+|+++.+... .+.+++|++|+++|+.|++
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 115 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQ 115 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHH
Confidence 3344444443 99999999999999998 678999999999999999999999987643 4579999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh--cc--CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM--AL--LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~--~~--~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.+. ....+..+..+.|+...... .. ..++|+|+||+++..++.+. ...+++++++|+||||.+.+ .++.
T Consensus 116 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~ 192 (237)
T 3bor_A 116 KVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR--YLSPKWIKMFVLDEADEMLSRGFKD 192 (237)
T ss_dssp HHHHHH-TTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT--SSCSTTCCEEEEESHHHHHHTTCHH
T ss_pred HHHHHH-hhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC--CcCcccCcEEEECCchHhhccCcHH
Confidence 999874 44447788888886543321 11 23799999999987777652 23467899999999997643 4444
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHH
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLAD 863 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~ 863 (1492)
.+..++.. .+...|++++|||+++ ..+++.
T Consensus 193 ~l~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 193 QIYEIFQK-------LNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp HHHHHHHH-------SCTTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHh-------CCCCCeEEEEEEecCHHHHHHHH
Confidence 44444332 3457899999999976 344443
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=249.80 Aligned_cols=323 Identities=16% Similarity=0.180 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.|+|+|.+++..++ ..+.+.|++.+||+|||++++..+...+. ....+.+|||+| .+|+.|..+++.+.+ .+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CC
Confidence 59999999997543 46789999999999999998777665432 234678999999 677887777666543 25
Q ss_pred CEEEEEcCCCCcch---------------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 764 KEMVEMTGDYTPDL---------------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~---------------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
.++..++|+..... ....+.+|+|+|++.+....... ....+++||+||||.+..... ..
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s-~~ 386 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAES-SL 386 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSS-HH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchh-HH
Confidence 67888888653221 12346799999999874432221 123678999999999854322 22
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHH---HHhcCCcce---eEecCCC--------------ccc-----
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLA---DWLGVGEIG---LFNFKPS--------------VRP----- 881 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~---~~l~~~~~~---~~~~~~~--------------~r~----- 881 (1492)
...+.. . ...+.++||||+-. ..++. .|+....-. .+.+... .+|
T Consensus 387 ~~~l~~-------l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 387 YESLNS-------F-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp HHHHTT-------S-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred HHHHHH-------h-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 222221 1 24556899999832 33332 333211100 0000000 000
Q ss_pred --------cCcE-EEE--eccCCc---ccccc-------------------c----------------------------
Q 043190 882 --------VPLE-VHI--QGYPGK---FYCPR-------------------M---------------------------- 900 (1492)
Q Consensus 882 --------~~l~-~~~--~~~~~~---~~~~~-------------------~---------------------------- 900 (1492)
.|-. ... ...... .|... .
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 0000 000 000000 00000 0
Q ss_pred -ccc--------------Chh-HHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHh
Q 043190 901 -NSM--------------NKP-AYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLS 963 (1492)
Q Consensus 901 -~~~--------------~~~-~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1492)
... +.. +...+.. ...+.++|||+.....+..++..|..
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------------------ 594 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------------------ 594 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------------------
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHh------------------------
Confidence 000 000 0111111 24567999999999988877766632
Q ss_pred hcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc---eEEEeccccccccCCCCcEEEEecceeeeCccCccccC
Q 043190 964 QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKI---QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF 1040 (1492)
Q Consensus 964 ~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~ 1040 (1492)
.++.+..+||+++..+|..+++.|++|.. .+|++|.+++.|+|++++++||. ||+ +.
T Consensus 595 ----------~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~----~D~------~w 654 (800)
T 3mwy_W 595 ----------KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI----FDS------DW 654 (800)
T ss_dssp ----------HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE----SSC------CS
T ss_pred ----------CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE----ecC------CC
Confidence 26678899999999999999999998654 49999999999999999999997 553 33
Q ss_pred CHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1041 PITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1041 ~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++..+.|++||++|.|..+...+|.++....
T Consensus 655 np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 655 NPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp CSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred ChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 5789999999999999888888888888764
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=210.02 Aligned_cols=168 Identities=18% Similarity=0.234 Sum_probs=131.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc----CCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT----QSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~----~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|+..|+|+|.++++.++ +++++++++|||||||++|.+|++..+.. .++.+++|++|+++|+.|+++.+.+.+..
T Consensus 20 ~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 89999999999999998 67899999999999999999999998753 24678999999999999999998875432
Q ss_pred ccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
.++..+.|+...... ...+++|+|+||+++..++++ ....+++++++|+||||.+.+ .++..++.++.
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~--- 170 (207)
T 2gxq_A 99 ---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLS--- 170 (207)
T ss_dssp ---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHH---
T ss_pred ---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccchHHHHHHHHH---
Confidence 567778887653221 224789999999999877775 233478899999999997743 44444444433
Q ss_pred HhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 837 YISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
..+.+.+++++|||+++ .+++++++
T Consensus 171 ----~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 171 ----ATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp ----TSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred ----hCCccCeEEEEEEecCHHHHHHHHHH
Confidence 23457899999999986 45555554
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-20 Score=232.16 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=99.5
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++||||+|++.++.++..|.+ .+..+.++||++++.+|..++
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~----------------------------------~gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVE----------------------------------HGIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTCCHHHHHHHH
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHh----------------------------------cCCCceeecCCCCHHHHHHHH
Confidence 3567999999999999999987743 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+..... ++.+..+|+||+|||||.+ .|.|+++++..+...
T Consensus 483 ~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G-~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 483 RDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARNA---RGEVWLYADRVSEAM 554 (664)
T ss_dssp HHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCS-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCCHHH
T ss_pred HHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccC-CCCCHHHHHHHHCccCcCC---CCEEEEEEcCCCHHH
Confidence 9999999999999999999999999999987 4432211 2447889999999999974 799999998776544
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=223.29 Aligned_cols=131 Identities=18% Similarity=0.111 Sum_probs=105.1
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
..|+ .|+++|..+++.++ .|+ |..++||+|||++|.+|++..... +..+++++||+.||.|.++.+... ...+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l-~~~l 147 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPV-YRGL 147 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHH-HHTT
T ss_pred HhCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHH-HHhc
Confidence 4499 79999999999988 565 999999999999999999644333 678999999999999999988874 4556
Q ss_pred CCEEEEEcCCCCcchhc-cCCCcEEEECchhh-hHhhhccc----CccccC---cccEEEEeccccc
Q 043190 763 GKEMVEMTGDYTPDLMA-LLSADIIISTPEKW-DGISRNWH----SRNYVK---KVGLMILDEIHLL 820 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~-~~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~---~i~liViDEaH~l 820 (1492)
|++|+.++|+.+.+.+. ...++|+|+||+.+ .++++... ....++ .+.++||||+|.+
T Consensus 148 GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsm 214 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSI 214 (997)
T ss_dssp TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHH
Confidence 99999999987754332 34789999999997 45555432 123466 8999999999965
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-18 Score=217.89 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=99.4
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..++++||||+|++.++.++..|.+ .+..+.++||++++.+|..++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~----------------------------------~gi~~~~lh~~~~~~~R~~~l 488 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKE----------------------------------IGIKVNYLHSEIKTLERIEII 488 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTCCHHHHHHHH
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHh----------------------------------cCCCeEEEeCCCCHHHHHHHH
Confidence 4567999999999999999987743 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+..... ++.+..+|+||+|||||. ..|.|++++++.+...
T Consensus 489 ~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G-~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 489 RDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCT-TTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHHH
T ss_pred HHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCccccc-CCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHHH
Confidence 9999999999999999999999999999987 4432111 234688999999999996 5899999998876543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=226.76 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=134.4
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeec-CCcccc---cceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFD-SSYRPI---PLAQQYIGISEPNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~-~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
...++|+++||||+|+ ..+++.++... +..++... ...++. .+.+.+...... .......+ ..+...+ ...
T Consensus 261 ~~~~~~~l~~SAT~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~-~~~ 336 (563)
T 3i5x_A 261 SADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHERIDQSVVISEKF-ANSIFAAV-EHIKKQI-KER 336 (563)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSSCSSCTTEEEEEEEESST-THHHHHHH-HHHHHHH-HHT
T ss_pred CccCceEEEEEccCCHHHHHHHHHhcCC-CceEEEeccCCCCccccccCceEEEECchh-HhhHHHHH-HHHHHHH-hhc
Confidence 3457899999999998 46677776554 22222211 111111 122222222211 11111111 1111111 111
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||+|++.|+.+++.|.+.... ..+++.|||+|++.+|.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~----------------------------------~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK----------------------------------DLPILEFHGKITQNKRT 382 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT----------------------------------TSCEEEESTTSCHHHHH
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC----------------------------------CceEEEecCCCCHHHHH
Confidence 45789999999999999999988765321 23589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|+++|||||+++++|||+|++++||. |++. .+..+|+||+|||||.| ..|.|++++.+.+...
T Consensus 383 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p---~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVP---SELANYIHRIGRTARSG--KEGSSVLFICKDELPF 453 (563)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCC---SSTTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHH
T ss_pred HHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECCC---CchhhhhhhcCccccCC--CCceEEEEEchhHHHH
Confidence 9999999999999999999999999999999996 5543 25667999999999999 6799999999888776
Q ss_pred HHHHh
Q 043190 239 YLRLL 243 (1492)
Q Consensus 239 ~~~~~ 243 (1492)
+..+.
T Consensus 454 ~~~l~ 458 (563)
T 3i5x_A 454 VRELE 458 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=214.79 Aligned_cols=178 Identities=21% Similarity=0.346 Sum_probs=135.4
Q ss_pred CcccEEEEcccCCCh--HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcC
Q 043190 6 RMIRIVGLSATLPNY--LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQG 81 (1492)
Q Consensus 6 ~~~riv~lSATl~n~--~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (1492)
+++++++||||.++. +++.++++.. +..+ ...+..|| .+...+ ..... +.. .+.+.+ ..+
T Consensus 173 ~~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~-~~~~~~r~-~l~~~v--~~~~~---~~~--------~l~~~l~~~~~ 236 (523)
T 1oyw_A 173 PTLPFMALTATADDTTRQDIVRLLGLN-DPLI-QISSFDRP-NIRYML--MEKFK---PLD--------QLMRYVQEQRG 236 (523)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCC-SCEE-EECCCCCT-TEEEEE--EECSS---HHH--------HHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhCCC-CCeE-EeCCCCCC-ceEEEE--EeCCC---HHH--------HHHHHHHhcCC
Confidence 358999999999873 7889999765 2222 23333444 332222 22211 111 122222 256
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+||++++.+++.|.+. ...++.|||+|++++|..++
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~-------------------------------------g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSK-------------------------------------GISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCCCHHHHHHHH
Confidence 79999999999999999988653 23489999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|+++|||||+++++|||+|++++||+ |++. .+..+|.||+|||||.| ..|.|+++++..+...+..
T Consensus 280 ~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~p---~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~ 350 (523)
T 1oyw_A 280 EKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIP---RNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRR 350 (523)
T ss_dssp HHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCC---SSHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHH
T ss_pred HHHHcCCCeEEEEechhhCCCCccCccEEEE----ECCC---CCHHHHHHHhccccCCC--CCceEEEEeCHHHHHHHHH
Confidence 9999999999999999999999999999996 5543 35667999999999999 6799999999988887777
Q ss_pred HhcC
Q 043190 242 LLTS 245 (1492)
Q Consensus 242 ~~~~ 245 (1492)
++..
T Consensus 351 ~~~~ 354 (523)
T 1oyw_A 351 CLEE 354 (523)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7765
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=216.35 Aligned_cols=182 Identities=21% Similarity=0.332 Sum_probs=136.8
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh---c
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR---Q 80 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 80 (1492)
+++|+|+||||+++ .+++.++++.. . ...+...+...++...+... ...... ....+.+.+. .
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~-~--~~~~~~~~~r~nl~~~v~~~-~~~~~~--------~~~~l~~~l~~~~~ 266 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIE-K--CFTFTASFNRPNLYYEVRQK-PSNTED--------FIEDIVKLINGRYK 266 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCC-S--CEEEECCCCCTTEEEEEEEC-CSSHHH--------HHHHHHHHHTTTTT
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCC-C--cEEEecCCCCcccEEEEEeC-CCcHHH--------HHHHHHHHHHHhcc
Confidence 46899999999987 47788898764 2 22333344333443332221 111111 1223334433 5
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+||++++.+++.|.+. ..+++.+||||++++|..+
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~-------------------------------------g~~~~~~h~~l~~~~R~~~ 309 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL-------------------------------------GIHAGAYHANLEPEDKTTV 309 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHH
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCCCHHHHHHH
Confidence 689999999999999999988642 3358999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|.++|||||+++++|||+|++++||+ |++.. +..+|.||+|||||.| ..|.|+++++..+...+.
T Consensus 310 ~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~p~---s~~~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 310 HRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSMSK---SMENYYQESGRAGRDD--MKADCILYYGFGDIFRIS 380 (591)
T ss_dssp HHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSCCS---SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHH
T ss_pred HHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCCCC---CHHHHHHHhccCCcCC--CCceEEEEEChHHHHHHH
Confidence 99999999999999999999999999999996 65432 5667999999999998 679999999988887777
Q ss_pred HHhcC
Q 043190 241 RLLTS 245 (1492)
Q Consensus 241 ~~~~~ 245 (1492)
.++..
T Consensus 381 ~~~~~ 385 (591)
T 2v1x_A 381 SMVVM 385 (591)
T ss_dssp HHTTT
T ss_pred HHHhh
Confidence 66543
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=215.87 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=132.5
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecC-Cccc---ccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDS-SYRP---IPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~-~~rp---v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
+.++|+++||||+|+ ..+++.++... +..++.... ..++ ..+.+.+...... .......+ ..+...+ ....
T Consensus 211 ~~~~~~l~~SAT~~~~v~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~-~~l~~~~-~~~~ 286 (579)
T 3sqw_A 211 ADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHERIDQSVVISEKF-ANSIFAAV-EHIKKQI-KERD 286 (579)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSSCSSCTTEEEEEEEESST-THHHHHHH-HHHHHHH-HHTT
T ss_pred ccCceEEEEeccCChHHHHHHHHHcCC-CceEEEeecCccccccccccceEEEEecch-hhhHHHHH-HHHHHHH-hhcC
Confidence 457899999999998 46666666554 222222111 1111 1222223222221 11111111 1111111 1114
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||+|++.|+.+++.|.+.... ...+..|||+|++++|..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~----------------------------------~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK----------------------------------DLPILEFHGKITQNKRTS 332 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT----------------------------------TSCEEEESTTSCHHHHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC----------------------------------CCcEEEecCCCCHHHHHH
Confidence 5679999999999999999988765321 235889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|||+|++++||. |++. .+..+|+||+|||||.| ..|.|++++.+.+...+
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~~p---~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~ 403 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVP---SELANYIHRIGRTARSG--KEGSSVLFICKDELPFV 403 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCC---SSTTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHH
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE----cCCC---CCHHHhhhhccccccCC--CCceEEEEEcccHHHHH
Confidence 999999999999999999999999999999996 5543 25667999999999999 67999999998886665
Q ss_pred HHH
Q 043190 240 LRL 242 (1492)
Q Consensus 240 ~~~ 242 (1492)
..+
T Consensus 404 ~~l 406 (579)
T 3sqw_A 404 REL 406 (579)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=180.06 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=97.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||++++.++.++..|.+. ..+++++||+|++.+|..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-------------------------------------GHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-------------------------------------TCCEEEECSSCCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCcEEEEeCCCCHHHHHH
Confidence 4679999999999999999877542 335999999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|+|+|+.++||+...++++. ...+..+|+||+|||||.| ..|.++++++..+...+
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~-~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 152 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG-EEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELPSL 152 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--C-CSCCHHHHHHHHCBC------CCEEEEEEECGGGHHHH
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcc-ccCCHHHHHHHhcccccCC--CCceEEEEEccchHHHH
Confidence 99999999999999999999999999999999743333221 1146677999999999998 67999999998876555
Q ss_pred HH
Q 043190 240 LR 241 (1492)
Q Consensus 240 ~~ 241 (1492)
.+
T Consensus 153 ~~ 154 (175)
T 2rb4_A 153 MK 154 (175)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=207.06 Aligned_cols=182 Identities=24% Similarity=0.261 Sum_probs=125.6
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCC-cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSS-YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+++.|+++||||+++ ...++...... + ........ ..+-.+.+.+..... ...+...+... ... ..+
T Consensus 197 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-----~~~-~~~ 266 (412)
T 3fht_A 197 LPRNCQMLLFSATFEDSVWKFAQKVVPD-P-NVIKLKREEETLDTIKQYYVLCSS--RDEKFQALCNL-----YGA-ITI 266 (412)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSSS-C-EEECCCGGGSSCTTEEEEEEECSS--HHHHHHHHHHH-----HHH-HSS
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhcCC-C-eEEeeccccccccCceEEEEEcCC--hHHHHHHHHHH-----Hhh-cCC
Confidence 3567899999999987 33455444433 1 12222222 222233333333222 12222222111 111 356
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+|++.++.+++.|.+. ..++++|||+|++++|..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE-------------------------------------GHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC-------------------------------------CCeEEEecCCCCHHHHHHHH
Confidence 79999999999999999888643 33589999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+.|++|.++|||||+++++|||+|++++||+...+.++. ...+..+|+||+|||||.| ..|.++++++..+
T Consensus 310 ~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~-~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 310 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD-GNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp HHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS-SSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHH
T ss_pred HHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC-CCcchheeecccCcccCCC--CCceEEEEEcChh
Confidence 999999999999999999999999999999733222211 0124467999999999998 6799999998765
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=176.44 Aligned_cols=143 Identities=22% Similarity=0.356 Sum_probs=112.3
Q ss_pred cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhH
Q 043190 44 PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLS 123 (1492)
Q Consensus 44 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (1492)
+..+.+.++.+... .+...+.+++ .. .+++++||||++++.++.+++.|.+.
T Consensus 7 ~~~i~~~~~~~~~~---~K~~~L~~ll-----~~-~~~~~~lVF~~~~~~~~~l~~~L~~~------------------- 58 (163)
T 2hjv_A 7 TRNIEHAVIQVREE---NKFSLLKDVL-----MT-ENPDSCIIFCRTKEHVNQLTDELDDL------------------- 58 (163)
T ss_dssp CCCEEEEEEECCGG---GHHHHHHHHH-----HH-HCCSSEEEECSSHHHHHHHHHHHHHT-------------------
T ss_pred cccceEEEEECChH---HHHHHHHHHH-----Hh-cCCCcEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 34566776665432 2222222222 11 35679999999999999999888642
Q ss_pred HHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC
Q 043190 124 LIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG 203 (1492)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~ 203 (1492)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |++ +
T Consensus 59 ------------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~---p 113 (163)
T 2hjv_A 59 ------------------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDL---P 113 (163)
T ss_dssp ------------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSC---C
T ss_pred ------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCC---C
Confidence 235899999999999999999999999999999999999999999999996 554 3
Q ss_pred cccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 204 WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 204 ~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
++..+|.||+|||||.| ..|.+++++...+...+.+
T Consensus 114 ~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 149 (163)
T 2hjv_A 114 LEKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLAD 149 (163)
T ss_dssp SSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHH
T ss_pred CCHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHH
Confidence 46667999999999999 6799999999887665554
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=183.11 Aligned_cols=116 Identities=26% Similarity=0.378 Sum_probs=100.1
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||+|+++++.+++.|.+. +.++..+||+|++.+|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~r~ 71 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL-------------------------------------GHPAQALHGDLSQGERE 71 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH-------------------------------------TCCEEEECSSSCHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEEECCCCHHHHH
Confidence 45789999999999999999888653 33589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|.++|||||+++++|+|+|++++||+ |++. ++..+|.||+|||||.| ..|.|+++++..+...
T Consensus 72 ~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~p---~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~~ 142 (212)
T 3eaq_A 72 RVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRLP---DRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRD 142 (212)
T ss_dssp HHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSCC---SSHHHHHHHHTTBCCCC----BEEEEEECGGGHHH
T ss_pred HHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCCC---cCHHHHHHHhcccCCCC--CCCeEEEEEchhHHHH
Confidence 9999999999999999999999999999999996 5543 46677999999999999 6799999999887554
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 143 ~~ 144 (212)
T 3eaq_A 143 VE 144 (212)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.5e-18 Score=204.68 Aligned_cols=170 Identities=22% Similarity=0.275 Sum_probs=122.0
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEe-ecCCc-ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hc
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFF-FDSSY-RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQ 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~-~~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (1492)
+.+.|+++||||+|+ .++++..+..+ .+++ ++... ....+.+.+..+.... +.. .+.+.+ ..
T Consensus 234 ~~~~q~l~~SAT~~~~~~~~~~~~l~~---~~~i~~~~~~~~~~~i~~~~~~~~~~~---k~~--------~l~~~l~~~ 299 (434)
T 2db3_A 234 RPEHQTLMFSATFPEEIQRMAGEFLKN---YVFVAIGIVGGACSDVKQTIYEVNKYA---KRS--------KLIEILSEQ 299 (434)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHTTCSS---CEEEEESSTTCCCTTEEEEEEECCGGG---HHH--------HHHHHHHHC
T ss_pred CCCceEEEEeccCCHHHHHHHHHhccC---CEEEEeccccccccccceEEEEeCcHH---HHH--------HHHHHHHhC
Confidence 567899999999986 44444433222 2221 22211 2223444444333211 111 111222 23
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+|++.|+.+++.|.+. ...+..+||++++.+|..+
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEK-------------------------------------EFPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEESTTSCHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHHHH
Confidence 445999999999999999888642 2348899999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
++.|++|+.+|||||+++++|+|+|++++||+ ||.. .+..+|+||+|||||.| ..|.|+++++++
T Consensus 343 l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~p---~~~~~y~qriGR~gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 343 LRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDMP---SKIDDYVHRIGRTGRVG--NNGRATSFFDPE 407 (434)
T ss_dssp HHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSCC---SSHHHHHHHHTTSSCTT--CCEEEEEEECTT
T ss_pred HHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECCC---CCHHHHHHHhcccccCC--CCCEEEEEEecc
Confidence 99999999999999999999999999999997 6643 35667999999999999 679999999844
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=206.50 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=123.8
Q ss_pred cccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCC-cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSS-YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
..|+++||||+|+ .++++..+... +. ....... ..+..+.+.+..+... .+...+ . .++.....++++
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~l----~-~~l~~~~~~~~~ 279 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDE-YI-FLAVGRVGSTSENITQKVVWVEES---DKRSFL----L-DLLNATGKDSLT 279 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSS-CE-EEEEC----CCSSEEEEEEECCGG---GHHHHH----H-HHHHTCCTTCEE
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCC-CE-EEEeCCCCCCccCceEEEEEeccH---hHHHHH----H-HHHHhcCCCCeE
Confidence 6899999999986 44454443322 11 1112111 1222344444433321 111111 1 122222457789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
||||+|+++++.+++.|.+. ..++..+||+|++++|..+++.|
T Consensus 280 lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 280 LVFVETKKGADSLEDFLYHE-------------------------------------GYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp EEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHC-------------------------------------CCCeeEecCCCCHHHHHHHHHHH
Confidence 99999999999999888642 23589999999999999999999
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++|..+|||||+++++|||+|++++||. |++. ++..+|+||+|||||.| ..|.|++++++.+...+.
T Consensus 323 ~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 323 RSGKSPILVATAVAARGLDISNVKHVIN----FDLP---SDIEEYVHRIGRTGRVG--NLGLATSFFNERNINITK 389 (417)
T ss_dssp HHTSSCEEEECHHHHTTSCCCCEEEEEE----SSCC---SSHHHHHHHHTTBCC----CCEEEEEEECGGGGGGHH
T ss_pred HcCCCCEEEECChhhcCCCcccCCEEEE----EcCC---CCHHHHHHhcCccccCC--CCceEEEEEccccHHHHH
Confidence 9999999999999999999999999996 5543 35667999999999999 679999999887754433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=203.74 Aligned_cols=181 Identities=20% Similarity=0.309 Sum_probs=127.3
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEe-e-cCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFF-F-DSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~-~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+++.|++++|||+|+ ++.+++.......... + .....+..+.+.+..+.... .+...+.+ +... ...
T Consensus 207 ~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~k~~~l~~-----~~~~-~~~ 276 (410)
T 2j0s_A 207 LPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE--WKFDTLCD-----LYDT-LTI 276 (410)
T ss_dssp SCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT--HHHHHHHH-----HHHH-HTS
T ss_pred CccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHH--hHHHHHHH-----HHHh-cCC
Confidence 4567899999999986 3333332211112221 1 11222333444444443322 11122111 1122 245
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+|++.++.+++.|.+. ..++..+||+|++++|..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~ 319 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-------------------------------------NFTVSSMHGDMPQKERESIM 319 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHH
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-------------------------------------CCceEEeeCCCCHHHHHHHH
Confidence 68999999999999999888642 23488999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.|++|.++|||||+++++|+|+|++++||. |++. ++...|+||+|||||.| ..|.+++++++++...+.
T Consensus 320 ~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (410)
T 2j0s_A 320 KEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLP---NNRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILR 389 (410)
T ss_dssp HHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCC---SSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHH
T ss_pred HHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECCC---CCHHHHHHhcccccCCC--CceEEEEEecHHHHHHHH
Confidence 9999999999999999999999999999996 5543 35667999999999998 679999999888755443
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=173.81 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=96.7
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.++..|.+. ..+++.+||+|++.+|..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND-------------------------------------KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCCEEEEECCCCHHHHHH
Confidence 5679999999999999999888642 235899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|+|+|+.++||. |++ +++..+|.||+|||||.| ..|.+++++++++...+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~---p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 142 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL---PANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 142 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSC---CSSGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCC---CCCHHHHHHHhcccccCC--CCceEEEEEcchHHHHH
Confidence 999999999999999999999999999999997 554 346677999999999999 77999999988876555
Q ss_pred HH
Q 043190 240 LR 241 (1492)
Q Consensus 240 ~~ 241 (1492)
.+
T Consensus 143 ~~ 144 (165)
T 1fuk_A 143 RE 144 (165)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=187.17 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=112.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----CCceEEEEcccHHHHHH-HHHHHHHHhhh
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SDMKVVYIAPLKAIVRE-RMNDWKDRLVS 760 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~~~~l~i~P~r~La~q-~~~~~~~~~~~ 760 (1492)
...|+|+|.++++.++ .++++++.+|||+|||+++.++++..+... .+.+++|++|+++|+.| ..+.+.. +..
T Consensus 31 ~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~-~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP-FLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH-HHT
T ss_pred CCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH-Hhc
Confidence 3469999999999998 678999999999999999999998776532 36799999999999999 4445544 444
Q ss_pred ccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccC----ccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHS----RNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~----~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
. +.++..++|+..... .....++|+|+||+++...+..... ...+.++++||+||||++... ..+..++.
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~~~~~~ 185 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVYNNIMR 185 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcHHHHHH
Confidence 3 678888888765432 1223589999999999877765432 134678999999999988532 23333333
Q ss_pred HHHHhh-h---------ccCCceEEEEEcCC
Q 043190 834 RMRYIS-S---------QTERAVRFIGLSTA 854 (1492)
Q Consensus 834 ~l~~~~-~---------~~~~~~~ii~lSAT 854 (1492)
++.... . .....+++++||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 321111 0 11257899999998
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=202.13 Aligned_cols=183 Identities=23% Similarity=0.270 Sum_probs=128.0
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++.|+++||||+++ ..+++.++... +..+........+..+.+.+..... ...+...+.. +... ..++
T Consensus 174 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-----~~~~-~~~~ 244 (395)
T 3pey_A 174 LPKDTQLVLFSATFADAVRQYAKKIVPN-ANTLELQTNEVNVDAIKQLYMDCKN--EADKFDVLTE-----LYGL-MTIG 244 (395)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSCS-CEEECCCGGGCSCTTEEEEEEECSS--HHHHHHHHHH-----HHTT-TTSS
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHhCCC-CeEEEccccccccccccEEEEEcCc--hHHHHHHHHH-----HHHh-ccCC
Confidence 4567899999999987 46666666544 2222222222222233333333221 1222211111 1111 2467
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||++++.++.+++.|.+. ...+.+|||+|++++|..+++
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~ 287 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSE-------------------------------------GHEVSILHGDLQTQERDRLID 287 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCcEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999888643 234899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC---CcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG---GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~---~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.|++|+++|||||+++++|||+|+.++||. |++... ..+..+|.||+|||||.| ..|.++++++..+...
T Consensus 288 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~ 360 (395)
T 3pey_A 288 DFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHDKNSFN 360 (395)
T ss_dssp HHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHH
T ss_pred HHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEechHHHH
Confidence 999999999999999999999999999996 443321 124567999999999999 6799999998765433
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=184.31 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.++++|.++++.+. .+++++++||||||||+++.++++......+ +.++++++|+++|+.|+++.+...++...|.
T Consensus 61 p~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 37899999999997 7899999999999999999999888654322 3489999999999999999988777655555
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.++..... .......+++|+|+||+++..++.. .+++++++|+||||.+ +...+.....++.+... .+
T Consensus 140 ~~g~~~~~--~~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~----~~~~~~~~~~l~~i~~~-~~ 207 (235)
T 3llm_A 140 SCGYSVRF--ESILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER----DINTDFLLVVLRDVVQA-YP 207 (235)
T ss_dssp SEEEEETT--EEECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC----CHHHHHHHHHHHHHHHH-CT
T ss_pred eEEEeech--hhccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC----CcchHHHHHHHHHHHhh-CC
Confidence 55542211 1111124689999999998777764 2789999999999953 23333333344443332 24
Q ss_pred ceEEEEEcCCCCChHHHHHHhcCCc
Q 043190 845 AVRFIGLSTALANAGDLADWLGVGE 869 (1492)
Q Consensus 845 ~~~ii~lSATl~~~~~~~~~l~~~~ 869 (1492)
+.|++++|||+++.. +++|++..+
T Consensus 208 ~~~~il~SAT~~~~~-~~~~~~~~p 231 (235)
T 3llm_A 208 EVRIVLMSATIDTSM-FCEYFFNCP 231 (235)
T ss_dssp TSEEEEEECSSCCHH-HHHHTTSCC
T ss_pred CCeEEEEecCCCHHH-HHHHcCCCC
Confidence 789999999998755 899987543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=174.18 Aligned_cols=130 Identities=21% Similarity=0.315 Sum_probs=104.3
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+....+.+++||||++++.++.++..|.. .+.++..+||+|++.+
T Consensus 27 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 27 NIYGSITIGQAIIFCQTRRNAKWLTVEMIQ----------------------------------DGHQVSLLSGELTVEQ 72 (175)
T ss_dssp HHHTTSCCSEEEEECSCHHHHHHHHHHHHT----------------------------------TTCCEEEECSSCCHHH
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHH----------------------------------cCCcEEEEeCCCCHHH
Confidence 333444678999999999999999887732 2567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..+++.|++|+++|||||+++++|+|+|++++||+ |+.+.....+.+..+|+||+|||||.| ..|.|++++.+
T Consensus 73 R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 146 (175)
T 2rb4_A 73 RASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN----FDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEV 146 (175)
T ss_dssp HHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE----SSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECG
T ss_pred HHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE----eCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999997 554322112357899999999999987 78999999998
Q ss_pred CcHHHHHHhh
Q 043190 1070 PKKSFYKKFL 1079 (1492)
Q Consensus 1070 ~~~~~~~~~l 1079 (1492)
.+...+.++.
T Consensus 147 ~~~~~~~~i~ 156 (175)
T 2rb4_A 147 DELPSLMKIQ 156 (175)
T ss_dssp GGHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 8876655543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=177.36 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=97.3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.+++.|.+. ..+++.+||+|++.+|..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ-------------------------------------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCEEEEECCCCHHHHHH
Confidence 5679999999999999999888642 235899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+++.|++|.++|||||+++++|+|+|+.++||+ ||++ ++...|.||+|||||.| ..|.+++++++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~p---~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMP---EDSDTYLHRVARAGRFG--TKGLAITFVSDEN 139 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCC---SSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECCC---CCHHHHHHHhcccccCC--CCcEEEEEEcChh
Confidence 999999999999999999999999999999996 6543 46667999999999999 6799999998754
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=197.42 Aligned_cols=180 Identities=23% Similarity=0.282 Sum_probs=127.7
Q ss_pred CCCcccEEEEcccCCC-h-HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPN-Y-LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~-~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.++..|+++||||+|. . +.+..++... ..+ ..........+.+.+...... .+...+. .+... ..+
T Consensus 191 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~---~k~~~l~-----~~~~~-~~~ 258 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEI-NLMEELTLKGITQYYAFVEER---QKLHCLN-----TLFSK-LQI 258 (400)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEE-SCCSSCBCTTEEEEEEECCGG---GHHHHHH-----HHHHH-SCC
T ss_pred CCcCceEEEEEecCCHHHHHHHHHHcCCC--eEE-EeccccccCCceeEEEEechh---hHHHHHH-----HHHhh-cCC
Confidence 4567899999999986 2 2234444322 111 112222222343333332221 1111111 11222 356
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||++++.++.+++.|.+. ..++.++||+|++++|..++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL-------------------------------------GYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH-------------------------------------TCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHhc-------------------------------------CCCeEEecCCCCHHHHHHHH
Confidence 79999999999999999888653 33589999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|.++|||||+++++|+|+|+.++||. |++. ++..+|+||+|||||.| ..|.|+++++.++...+.+
T Consensus 302 ~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~ 372 (400)
T 1s2m_A 302 HEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFP---KTAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYK 372 (400)
T ss_dssp HHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCC---SSHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHH
T ss_pred HHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCCC---CCHHHHHHhcchhcCCC--CCceEEEEeccchHHHHHH
Confidence 9999999999999999999999999999996 5543 35667999999999999 6799999999887655443
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-19 Score=219.16 Aligned_cols=188 Identities=24% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.++++|+|++|||+++ ...++...... +..+..-.....+..+.+.++.+.... .+...+... ... ..++
T Consensus 264 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-----~~~-~~~~ 334 (479)
T 3fmp_B 264 LPRNCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLKREEETLDTIKQYYVLCSSRD--EKFQALCNL-----YGA-ITIA 334 (479)
T ss_dssp SCTTSEEEEEESCCCHHHHHHHHHHSSS-EEEEEEC--------------------------------------------
T ss_pred CCccceEEEEeCCCCHHHHHHHHHHcCC-CeEEeccccccCcCCceEEEEEeCCHH--HHHHHHHHH-----Hhh-ccCC
Confidence 4668999999999987 44555554433 111111111122222333332222111 111111111 111 2457
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+|++.|+.++..|.+. ..++++|||+|++.+|..+++
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~-------------------------------------~~~v~~lh~~~~~~~R~~~~~ 377 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKE-------------------------------------GHQVALLSGEMMVEQRAAVIE 377 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhC-------------------------------------CccEEEecCCCCHHHHHHHHH
Confidence 8999999999999998877643 235899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
.|++|.++|||||+++++|+|+|++++||+...+.++. +..+..+|.||+|||||.| ..|.|+++++..+...+.
T Consensus 378 ~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~-~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 378 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD-GNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc-cCCCHHHHHHHhcccccCC--CCceEEEEEcCcchHHHH
Confidence 99999999999999999999999999999733222211 0124567999999999998 779999999876544443
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=195.48 Aligned_cols=342 Identities=20% Similarity=0.191 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.++|.|.+++..+ +..++++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+++.. +....+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----~~~v~i~~pt~~l~~q~~~~~~~-l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----KPKVLFVVRTHNEFYPIYRDLTK-IREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----CSEEEEEESSGGGHHHHHHHHTT-CCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----CCeEEEEcCCHHHHHHHHHHHHH-HhhhcCc
Confidence 4899999977654 3478999999999999999999999983 78999999999999999887765 4444477
Q ss_pred EEEEEcCCCC----c------------------------------c--------------------hhccCCCcEEEECc
Q 043190 765 EMVEMTGDYT----P------------------------------D--------------------LMALLSADIIISTP 790 (1492)
Q Consensus 765 ~v~~~~g~~~----~------------------------------~--------------------~~~~~~~~Iiv~Tp 790 (1492)
++..+.|... . . ......++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 8887777211 0 0 01123689999999
Q ss_pred hhhhHh-hhcccCccccCcccEEEEecccccCCCCc--------------------------------------------
Q 043190 791 EKWDGI-SRNWHSRNYVKKVGLMILDEIHLLGAERG-------------------------------------------- 825 (1492)
Q Consensus 791 e~l~~l-~~~~~~~~~l~~i~liViDEaH~l~~~~g-------------------------------------------- 825 (1492)
..+..- .+.. ........++||||||.+.+-+.
T Consensus 157 ~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 157 PYFFIDRYREF--IDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp HHHHCHHHHTT--SCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred hHhcCHHHHHh--cCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 987443 3332 11234678999999997643000
Q ss_pred -----------cHHHHHHHH-------------------------HHHhhh------------------------ccCCc
Q 043190 826 -----------PILEVIVSR-------------------------MRYISS------------------------QTERA 845 (1492)
Q Consensus 826 -----------~~~~~i~~~-------------------------l~~~~~------------------------~~~~~ 845 (1492)
..+..+... +..+.. .....
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 000011100 000000 01123
Q ss_pred -eEEEEEcCCCCChHHHHHHhcCCcce-----eEecCCCccccCcEEEEe-ccCCccccccccccChhHHHHHhh--cCC
Q 043190 846 -VRFIGLSTALANAGDLADWLGVGEIG-----LFNFKPSVRPVPLEVHIQ-GYPGKFYCPRMNSMNKPAYAAICT--HSP 916 (1492)
Q Consensus 846 -~~ii~lSATl~~~~~~~~~l~~~~~~-----~~~~~~~~r~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 916 (1492)
..+|++|||+...+.+.+.+|..... .+.+.+.+ +-.....+. ..+.. +..+.......+...+.. ...
T Consensus 315 ~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~-~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 315 ELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSK-YDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp TCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCC-TTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHHHHHhC
Confidence 68999999999888889999986322 22233333 222222221 11111 111111111112222211 123
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++.+|||++|.+..+.++.. .+..+..-..+++ +..+.+.
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~-------------------------------------~~~~v~~q~~~~~---~~~~~~~ 432 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR-------------------------------------ISLPKYVESEDSS---VEDLYSA 432 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT-------------------------------------CCSSEEECCSSCC---HHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHh-------------------------------------cCCcEEEcCCCCC---HHHHHHH
Confidence 56899999999887776631 1223333333444 3556777
Q ss_pred HhcCCceEEEec--cccccccCCC---C---cEEEEecceeeeC-------------ccC--cc---ccCC-HHHHHHhh
Q 043190 997 FANNKIQVLVCT--STLAWGVNLP---A---HLVIIKGTEYYDG-------------KTK--RY---VDFP-ITDILQMM 1049 (1492)
Q Consensus 997 f~~g~~~vLvaT--~~l~~Gvdip---~---~~~VI~~~~~~~~-------------~~~--~~---~~~~-~~~~~Qr~ 1049 (1492)
|+.+.-.||+|| ..+.+|||+| + ..+||.|-++-.+ ..+ .+ +.+| ...+.|-+
T Consensus 433 ~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~ 512 (551)
T 3crv_A 433 ISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAI 512 (551)
T ss_dssp TTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHh
Confidence 754344899998 6999999999 4 3456655443222 111 22 2223 45788999
Q ss_pred cccCCCCCCCceEEEEEecCCcHHHHHHhhc
Q 043190 1050 GRAGRPQYDQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1050 GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
||+-|.. ++.|..+++-..-....|.+.+.
T Consensus 513 GRlIR~~-~D~G~v~llD~R~~~~~~~~~~~ 542 (551)
T 3crv_A 513 GRAIRDV-NDKCNVWLLDKRFESLYWKKNLK 542 (551)
T ss_dssp HTTCCST-TCEEEEEEESGGGGSHHHHHHTT
T ss_pred ccCccCC-CccEEEEEeehhcccchhhhhce
Confidence 9999964 45787776654444455655544
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=169.67 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=104.9
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
..+++++||||++++.++.++..|.. .+..+..+||+|++.+|..+
T Consensus 32 ~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 32 TENPDSCIIFCRTKEHVNQLTDELDD----------------------------------LGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHH----------------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 34567999999999999999887733 25789999999999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.+++++.+.+..
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~------p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDL------PLEKESYVHRTGRTGRAG--NKGKAISFVTAFEKR 145 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSC------CSSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHH
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCC------CCCHHHHHHhccccCcCC--CCceEEEEecHHHHH
Confidence 99999999999999999999999999999998 442 346899999999999987 789999999988877
Q ss_pred HHHHhh
Q 043190 1074 FYKKFL 1079 (1492)
Q Consensus 1074 ~~~~~l 1079 (1492)
.+.++.
T Consensus 146 ~~~~i~ 151 (163)
T 2hjv_A 146 FLADIE 151 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=196.94 Aligned_cols=178 Identities=24% Similarity=0.299 Sum_probs=126.2
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc--ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY--RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
.+...|++++|||+++ ..++....... +..++ +.... ....+.+.+....... +...+.+ ++.. ..
T Consensus 181 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~-----~l~~-~~ 249 (391)
T 1xti_A 181 TPHEKQVMMFSATLSKEIRPVCRKFMQD-PMEIF-VDDETKLTLHGLQQYYVKLKDNE---KNRKLFD-----LLDV-LE 249 (391)
T ss_dssp SCSSSEEEEEESSCCSTHHHHHHHHCSS-CEEEE-CCCCCCCCCTTCEEEEEECCGGG---HHHHHHH-----HHHH-SC
T ss_pred CCCCceEEEEEeeCCHHHHHHHHHHcCC-CeEEE-ecCccccCcccceEEEEEcCchh---HHHHHHH-----HHHh-cC
Confidence 4567899999999987 34444433322 22222 22222 2233444444333221 1111111 1111 35
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||++++.++.+++.|.+. ...+..+||+|++++|..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~ 292 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ-------------------------------------NFPAIAIHRGMPQEERLSR 292 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHH
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCHHHHHHH
Confidence 789999999999999999888643 2248899999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
++.|++|..+|||||+++++|+|+|+.++||. |++. ++..+|.||+|||||.| ..|.+++++++.+...
T Consensus 293 ~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~p---~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 293 YQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMP---EDSDTYLHRVARAGRFG--TKGLAITFVSDENDAK 361 (391)
T ss_dssp HHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSCC---SSHHHHHHHHCBCSSSC--CCCEEEEEECSHHHHH
T ss_pred HHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCCC---CCHHHHHHhcccccCCC--CceEEEEEEcccchHH
Confidence 99999999999999999999999999999996 5543 36667999999999998 6799999998765433
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=198.44 Aligned_cols=126 Identities=21% Similarity=0.159 Sum_probs=86.6
Q ss_pred CCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
|| .|+|+|.+++..+ +..++++++.||||+|||++|++|++.. +.+++|++||++|+.|+++++.. +
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----~~~~~~~~~t~~l~~q~~~~~~~-l--- 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----KKKVLIFTRTHSQLDSIYKNAKL-L--- 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEEESCHHHHHHHHHHHGG-G---
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHh-c---
Confidence 66 6999999987643 3478899999999999999999998764 68999999999999999877654 2
Q ss_pred cCCEEEEEcCCCC--------------------------------------------------cchhccCCCcEEEECch
Q 043190 762 LGKEMVEMTGDYT--------------------------------------------------PDLMALLSADIIISTPE 791 (1492)
Q Consensus 762 ~g~~v~~~~g~~~--------------------------------------------------~~~~~~~~~~Iiv~Tpe 791 (1492)
+.++..+.|... ........++|+|+|+.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 445554443210 00111236799999999
Q ss_pred hhhH-hhhcccC----ccccCcccEEEEecccccC
Q 043190 792 KWDG-ISRNWHS----RNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 792 ~l~~-l~~~~~~----~~~l~~i~liViDEaH~l~ 821 (1492)
.+.. ..++... ...+....++||||||.+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 8643 3332111 1135678899999999883
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-18 Score=204.78 Aligned_cols=184 Identities=23% Similarity=0.335 Sum_probs=114.5
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..+++.|+|+||||+|+ ..++...+... +..+........+..+.+.+....... .+...+.. +.+. ..+
T Consensus 210 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-----~~~~-~~~ 280 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSDVLEVTKKFMRD-PIRILVKKEELTLEGIRQFYINVEREE--WKLDTLCD-----LYET-LTI 280 (414)
T ss_dssp TSCTTCEEEEECSCCCHHHHHHHTTTCSS-CEEECCCCCCCCTTSCCEEEEECSSST--THHHHHHH-----HHHS-SCC
T ss_pred hCCCCCeEEEEEEecCHHHHHHHHHHcCC-CEEEEecCCccCCCCceEEEEEeChHH--hHHHHHHH-----HHHh-CCC
Confidence 34678999999999976 33344433322 111111122223333444444333221 11111111 1111 245
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+++++++.+++.|.+. ..+++.+||+|++++|..++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~ 323 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR-------------------------------------DFTVSAMHGDMDQKERDVIM 323 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT-------------------------------------TCCCEEC---CHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCeEEEecCCCCHHHHHHHH
Confidence 78999999999999998877542 33589999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|.++|||||+++++|||+|++++||. |++. ++..+|.||+|||||.| ..|.|+++++.++...+.+
T Consensus 324 ~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 394 (414)
T 3eiq_A 324 REFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDLP---TNRENYIHRIGRGGRFG--RKGVAINMVTEEDKRTLRD 394 (414)
T ss_dssp HHHSCC---CEEECSSCC--CCGGGCSCEEE----SSCC---SSTHHHHHHSCCC---------CEEEEECSTHHHHHHH
T ss_pred HHHHcCCCcEEEECCccccCCCccCCCEEEE----eCCC---CCHHHhhhhcCcccCCC--CCceEEEEEcHHHHHHHHH
Confidence 9999999999999999999999999999996 5543 35567999999999998 6799999999887665543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=177.42 Aligned_cols=122 Identities=20% Similarity=0.325 Sum_probs=103.8
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+....+++++||||+++..++.++..|.. .+..+..+||+|++.+|
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~lhg~~~~~~r 70 (212)
T 3eaq_A 25 LLYVASPDRAMVFTRTKAETEEIAQGLLR----------------------------------LGHPAQALHGDLSQGER 70 (212)
T ss_dssp HHHHHCCSCEEEECSSHHHHHHHHHHHHH----------------------------------HTCCEEEECSSSCHHHH
T ss_pred HHHhCCCCeEEEEeCCHHHHHHHHHHHHH----------------------------------cCCCEEEEECCCCHHHH
Confidence 33344578999999999999999887743 26789999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++++++.
T Consensus 71 ~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~------p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~ 138 (212)
T 3eaq_A 71 ERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRL------PDRAEAYQHRSGRTGRAG--RGGRVVLLYGPR 138 (212)
T ss_dssp HHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSC------CSSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred HHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCC------CcCHHHHHHHhcccCCCC--CCCeEEEEEchh
Confidence 99999999999999999999999999999999997 442 336899999999999988 789999999988
Q ss_pred cHHHHHHh
Q 043190 1071 KKSFYKKF 1078 (1492)
Q Consensus 1071 ~~~~~~~~ 1078 (1492)
+...+..+
T Consensus 139 ~~~~~~~i 146 (212)
T 3eaq_A 139 ERRDVEAL 146 (212)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665544
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=186.25 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|+|+|.++++.++. +++.++++|||+|||+++..++...+.. ..++++|++|+++|+.|..+++.+.. ...+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~-~~~~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR-LFSHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHT-SCCGGGEE
T ss_pred CccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhc-ccccceEE
Confidence 699999999999884 4778899999999999998888876654 24599999999999999999998743 32245677
Q ss_pred EEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceE
Q 043190 768 EMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR 847 (1492)
Q Consensus 768 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 847 (1492)
.+.|+..........++|+|+||+.+. +. ....+.+++++|+||||++.. ..++.++. ......+
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~---~~~~~il~-------~~~~~~~ 254 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---KSISSIIS-------GLNNCMF 254 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---HHHHHHTT-------TCTTCCE
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc---ccHHHHHH-------HhhcCCe
Confidence 777765544334457899999998653 22 223467899999999998852 23333332 3334789
Q ss_pred EEEEcCCCCCh
Q 043190 848 FIGLSTALANA 858 (1492)
Q Consensus 848 ii~lSATl~~~ 858 (1492)
++++|||+++.
T Consensus 255 ~l~lSATp~~~ 265 (282)
T 1rif_A 255 KFGLSGSLRDG 265 (282)
T ss_dssp EEEECSSCCTT
T ss_pred EEEEeCCCCCc
Confidence 99999999874
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=185.55 Aligned_cols=115 Identities=27% Similarity=0.389 Sum_probs=95.9
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+|+++++.+++.|.+. ..++..+||+|++.+|..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL-------------------------------------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECSCCCTHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHHH
Confidence 4789999999999999998877532 345899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|||+|++++||+ |+.. ++..+|.||+|||||.| ..|.|+++++..+...+
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~p---~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRMP---DRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDV 140 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSCC---SSTTHHHHHHTCCC-------CEEEEEECSSTHHHH
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEE----cCCC---CCHHHHHHHccCcCcCC--CCceEEEEeChHHHHHH
Confidence 999999999999999999999999999999997 5432 35667999999999999 67999999998875544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 141 ~ 141 (300)
T 3i32_A 141 E 141 (300)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=173.97 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=86.1
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.+++++||||++++.++.+++.|... +.+++.+||+|++.+|.
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYHE-------------------------------------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHHT-------------------------------------TCCEEEEC--------C
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHc-------------------------------------CCceEEEeCCCCHHHHH
Confidence 35789999999999999999887642 23589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|.++|||||+++++|+|+|+.++||. ||+. ++..+|.||+|||||.| ..|.|+++++..+...
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~p---~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLP---SDIEEYVHRIGRTGRVG--NLGLATSFFNERNINI 157 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSCC---SSHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGG
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCCC---CCHHHHHHHccccCCCC--CCcEEEEEEchhhHHH
Confidence 9999999999999999999999999999999996 6543 46677999999999999 6799999998777544
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 158 ~~ 159 (185)
T 2jgn_A 158 TK 159 (185)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=169.84 Aligned_cols=123 Identities=20% Similarity=0.344 Sum_probs=101.3
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+....+++++||||++++.++.++..|.. .+..+..+||++++.+
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRN----------------------------------DKFTVSAIYSDLPQQE 68 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHH
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHH----------------------------------cCCCEEEEECCCCHHH
Confidence 333444678999999999999999887743 2567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|.||+||+||.| ..|.|++++.+
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~------p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 136 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL------PANKENYIHRIGRGGRFG--RKGVAINFVTN 136 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSC------CSSGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCC------CCCHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999998 443 336889999999999988 78999999998
Q ss_pred CcHHHHHHh
Q 043190 1070 PKKSFYKKF 1078 (1492)
Q Consensus 1070 ~~~~~~~~~ 1078 (1492)
.+...+.++
T Consensus 137 ~~~~~~~~~ 145 (165)
T 1fuk_A 137 EDVGAMREL 145 (165)
T ss_dssp TTHHHHHHH
T ss_pred hHHHHHHHH
Confidence 887665554
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-17 Score=171.18 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=101.0
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+....+++++||||+++..++.++..|.. .+.++..+||+|++.+|
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 25 LLDVLEFNQVVIFVKSVQRCIALAQLLVE----------------------------------QNFPAIAIHRGMPQEER 70 (172)
T ss_dssp HHHHSCCSSEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHH
T ss_pred HHHhCCCCcEEEEECCHHHHHHHHHHHHh----------------------------------cCCCEEEEECCCCHHHH
Confidence 33344678999999999999999987743 25678999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.+++++.+.
T Consensus 71 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~------p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~ 138 (172)
T 1t5i_A 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM------PEDSDTYLHRVARAGRFG--TKGLAITFVSDE 138 (172)
T ss_dssp HHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSC------CSSHHHHHHHHHHHTGGG--CCCEEEEEECSH
T ss_pred HHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECC------CCCHHHHHHHhcccccCC--CCcEEEEEEcCh
Confidence 99999999999999999999999999999999998 443 336899999999999988 789999999876
Q ss_pred cH
Q 043190 1071 KK 1072 (1492)
Q Consensus 1071 ~~ 1072 (1492)
+.
T Consensus 139 ~~ 140 (172)
T 1t5i_A 139 ND 140 (172)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-17 Score=192.49 Aligned_cols=175 Identities=23% Similarity=0.380 Sum_probs=127.7
Q ss_pred CCCcccEEEEcccCCCh--HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hc
Q 043190 4 TQRMIRIVGLSATLPNY--LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~--~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (1492)
.+++.|+++||||+++. +.+..+++.. . .+. ...+.++.+.+....... +. ..+.+.+ ..
T Consensus 175 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~---~~--------~~l~~~l~~~ 237 (367)
T 1hv8_A 175 CNKDKRILLFSATMPREILNLAKKYMGDY----S-FIK-AKINANIEQSYVEVNENE---RF--------EALCRLLKNK 237 (367)
T ss_dssp SCSSCEEEEECSSCCHHHHHHHHHHCCSE----E-EEE-CCSSSSSEEEEEECCGGG---HH--------HHHHHHHCST
T ss_pred CCCCceEEEEeeccCHHHHHHHHHHcCCC----e-EEE-ecCCCCceEEEEEeChHH---HH--------HHHHHHHhcC
Confidence 35678999999999862 3344454422 1 111 122234545544433221 11 1222222 45
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+++++++.+++.|.+. ..++..+||++++++|..+
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI-------------------------------------GFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECSSSCHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCeEEeeCCCCHHHHHHH
Confidence 678999999999999999887642 2358999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|+.+|||||+++++|+|+|+.++||. |++ +++..+|.||+|||||.| ..|.+++++++.+...+.
T Consensus 281 ~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~---~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~ 351 (367)
T 1hv8_A 281 IRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHL---PQNPESYMHRIGRTGRAG--KKGKAISIINRREYKKLR 351 (367)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSC---CSCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHH
T ss_pred HHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecC---CCCHHHhhhcccccccCC--CccEEEEEEcHHHHHHHH
Confidence 99999999999999999999999999999996 443 235667999999999999 679999999888765544
Q ss_pred H
Q 043190 241 R 241 (1492)
Q Consensus 241 ~ 241 (1492)
.
T Consensus 352 ~ 352 (367)
T 1hv8_A 352 Y 352 (367)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-17 Score=202.03 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=130.6
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
+++|++++|||.+..++++.+.+.. + .+....|+.|+... .... ..+. ......+
T Consensus 270 ~~i~il~~SAT~~~i~~l~~~~~~~----~-~v~~~~r~~~l~~~-----~~~l----~~l~-----------~~~~g~i 324 (677)
T 3rc3_A 270 EEVHLCGEPAAIDLVMELMYTTGEE----V-EVRDYKRLTPISVL-----DHAL----ESLD-----------NLRPGDC 324 (677)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHTCC----E-EEEECCCSSCEEEC-----SSCC----CSGG-----------GCCTTEE
T ss_pred cceEEEeccchHHHHHHHHHhcCCc----e-EEEEeeecchHHHH-----HHHH----HHHH-----------hcCCCCE
Confidence 5789999999988888888877543 1 23334566665421 1000 0000 1134458
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|+++++.+++.|.+. ..++++|||+|++++|..+++.|+
T Consensus 325 If~~s~~~ie~la~~L~~~-------------------------------------g~~v~~lHG~L~~~~R~~~~~~F~ 367 (677)
T 3rc3_A 325 IVCFSKNDIYSVSRQIEIR-------------------------------------GLESAVIYGSLPPGTKLAQAKKFN 367 (677)
T ss_dssp EECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHhc-------------------------------------CCCeeeeeccCCHHHHHHHHHHHH
Confidence 9999999999999888642 346999999999999999999999
Q ss_pred C--CCccEEEeccccccccCCCcEEEEEecccee--cCCCC----CcccCchhhhhhccCCCCCC-ccceEEEEeCCccH
Q 043190 166 E--GLLKVLVCTATLAWGVNLPAHTVVIKGTQLY--DPKAG----GWRDLGMLDIFGRAGRPQFD-RSGEGIIITSHDKL 236 (1492)
Q Consensus 166 ~--g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~--~~~~~----~~~~~~~~~~~GRAGR~~~d-~~G~~i~~~~~~~~ 236 (1492)
+ |.++|||||+++++|||+|+..||+.|...| |+..+ +++..+|.||+|||||.|.+ ..|.|+.++..+ .
T Consensus 368 ~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d-~ 446 (677)
T 3rc3_A 368 DPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED-L 446 (677)
T ss_dssp CTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH-H
T ss_pred ccCCCeEEEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch-H
Confidence 9 9999999999999999998888888777653 33311 45667799999999999976 358888776554 4
Q ss_pred HHHHHHhcC-CCccccc
Q 043190 237 AYYLRLLTS-QLPIESQ 252 (1492)
Q Consensus 237 ~~~~~~~~~-~~~ies~ 252 (1492)
..+.+++.. ..++++.
T Consensus 447 ~~~~~~~~~~~~~i~~~ 463 (677)
T 3rc3_A 447 SLLKEILKRPVDPIRAA 463 (677)
T ss_dssp HHHHHHHHSCCCCCCCE
T ss_pred HHHHHHHhcCcchhhhc
Confidence 455554444 4466663
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-17 Score=170.42 Aligned_cols=125 Identities=20% Similarity=0.282 Sum_probs=91.3
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
...+....+++++||||++++.++.++..|.. .+..+..+||++++
T Consensus 37 ~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~----------------------------------~g~~~~~lhg~~~~ 82 (185)
T 2jgn_A 37 LDLLNATGKDSLTLVFVETKKGADSLEDFLYH----------------------------------EGYACTSIHGDRSQ 82 (185)
T ss_dssp HHHHHHC-CCSCEEEEESCHHHHHHHHHHHHH----------------------------------TTCCEEEEC-----
T ss_pred HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH----------------------------------cCCceEEEeCCCCH
Confidence 33444444678999999999999999887733 25689999999999
Q ss_pred HHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 988 KDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 988 ~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
.+|..+++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|++++
T Consensus 83 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~------p~s~~~~~Qr~GR~~R~g--~~g~~~~~~ 150 (185)
T 2jgn_A 83 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDL------PSDIEEYVHRIGRTGRVG--NLGLATSFF 150 (185)
T ss_dssp ---CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSC------CSSHHHHHHHHTTBCCTT--SCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCC------CCCHHHHHHHccccCCCC--CCcEEEEEE
Confidence 99999999999999999999999999999999999998 443 336899999999999988 789999999
Q ss_pred cCCcHHHHHHh
Q 043190 1068 HEPKKSFYKKF 1078 (1492)
Q Consensus 1068 ~~~~~~~~~~~ 1078 (1492)
.+.+...+.++
T Consensus 151 ~~~~~~~~~~l 161 (185)
T 2jgn_A 151 NERNINITKDL 161 (185)
T ss_dssp CGGGGGGHHHH
T ss_pred chhhHHHHHHH
Confidence 88775544433
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=168.69 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=93.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||++++.++.+++.|... ...+..+||+|++++|..
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~~~~~~R~~ 95 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK-------------------------------------GVEAVAIHGGKDQEERTK 95 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCcEEEEeCCCCHHHHHH
Confidence 3568999999999999999888653 234889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
+++.|++|.++|||||+++++|+|+|++++||+ ||+. ++..+|.||+|||||.| ..|.++++++..
T Consensus 96 ~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~p---~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 96 AIEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDMP---EEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSCC---SSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCCC---CCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 999999999999999999999999999999996 6643 46667999999999999 679999998865
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-17 Score=202.76 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=0.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+++++++.+++.|.+. ..++..+||+|++++|..
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~ 300 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRND-------------------------------------KFTVSAIYSDLPQQERDT 300 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc-------------------------------------CCeEEEeeCCCCHHHHHH
Confidence 4578999999999999998877543 224888999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|..+|||||+++++|+|+|++++||. |++. ++..+|.||+|||||.| ..|.|++++++++...+
T Consensus 301 ~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~p---~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 301 IMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLP---ANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 371 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCCC---CCHHHHHHHcCcccCCC--CCceEEEEEchhHHHHH
Confidence 999999999999999999999999999999996 4432 35567999999999998 67999999988775544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 372 ~ 372 (394)
T 1fuu_A 372 R 372 (394)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=178.73 Aligned_cols=118 Identities=20% Similarity=0.345 Sum_probs=98.6
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..++++||||++++.++.++..|.. .+..+..+||+|++.+|..++
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~----------------------------------~g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLR----------------------------------LGHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHT----------------------------------TTCCEEEECSCCCTHHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh----------------------------------CCCCEEEEeCCCCHHHHHHHH
Confidence 3478999999999999998877732 267899999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|+++++..+...
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~------p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~ 139 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRM------PDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRD 139 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSC------CSSTTHHHHHHTCCC-------CEEEEEECSSTHHH
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE----cCC------CCCHHHHHHHccCcCcCC--CCceEEEEeChHHHHH
Confidence 9999999999999999999999999999998 442 235889999999999988 7899999999888665
Q ss_pred HHHh
Q 043190 1075 YKKF 1078 (1492)
Q Consensus 1075 ~~~~ 1078 (1492)
+..+
T Consensus 140 ~~~i 143 (300)
T 3i32_A 140 VEAL 143 (300)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=165.33 Aligned_cols=108 Identities=26% Similarity=0.386 Sum_probs=94.4
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++++||||+++..++.++..|.. .+..+..+||++++.+|..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~g~~~~~lhg~~~~~~R~~~l~~ 99 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----------------------------------KGVEAVAIHGGKDQEERTKAIEA 99 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----------------------------------HTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----------------------------------cCCcEEEEeCCCCHHHHHHHHHH
Confidence 56899999999999999887743 25678999999999999999999
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|++++++.
T Consensus 100 F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~------p~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 100 FREGKKDVLVATDVASKGLDFPAIQHVIN----YDM------PEEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSC------CSSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HhcCCCEEEEEcCchhcCCCcccCCEEEE----eCC------CCCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999998 553 336899999999999988 789999999876
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=183.88 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=122.0
Q ss_pred CCCcccEEEEcccCCCh--HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPNY--LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~--~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+...+++++|||+|+. +.+..|+... . .+.....+.++...+..+..... ... ..+ . -..+
T Consensus 157 ~~~~~~~~~~SAT~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~-~-~~~~ 220 (337)
T 2z0m_A 157 TSNRKITGLFSATIPEEIRKVVKDFITNY--E---EIEACIGLANVEHKFVHVKDDWR-SKV--------QAL-R-ENKD 220 (337)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHSCSC--E---EEECSGGGGGEEEEEEECSSSSH-HHH--------HHH-H-TCCC
T ss_pred CCcccEEEEEeCcCCHHHHHHHHHhcCCc--e---eeecccccCCceEEEEEeChHHH-HHH--------HHH-H-hCCC
Confidence 34577899999999872 3455665432 1 12223333445455544433211 110 111 0 1457
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+++++++.+++.|. ++..+||+|++.+|..++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~-----------------------------------------~~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD-----------------------------------------NAIELRGDLPQSVRNRNI 259 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT-----------------------------------------TEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEcCHHHHHHHHHHhh-----------------------------------------hhhhhcCCCCHHHHHHHH
Confidence 889999999999988775442 278899999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.|++|+++|||||+++++|+|+|+.++||. |++. ++..+|.||+|||||.| ..|.|++++. .+.....
T Consensus 260 ~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~---~s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~ 328 (337)
T 2z0m_A 260 DAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDAP---QDLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEK 328 (337)
T ss_dssp HHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSCC---SSHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHH
T ss_pred HHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecCC---CCHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHH
Confidence 9999999999999999999999999999986 5543 35667999999999998 6699999988 5544443
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-17 Score=173.11 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=98.4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.+++.|.+. ..+++.+||+|++.+|..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-------------------------------------GINNCYLEGEMVQGKRNE 71 (170)
Confidence 4578999999999999999887643 234888999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|+|+|+.++||. |++ +++..+|+||+|||||.| ..|.++++++..+...+
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~~---p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 142 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN----FDM---PRSGDTYLHRIGRTARAG--RKGTAISLVEAHDHLLL 142 (170)
Confidence 999999999999999999999999999999997 443 235566999999999998 67999999987765544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 143 ~ 143 (170)
T 2yjt_D 143 G 143 (170)
Confidence 3
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=168.09 Aligned_cols=139 Identities=23% Similarity=0.250 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE-E
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE-M 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~-v 766 (1492)
.|+++|.+++..++ .++++++++|||+|||.++..++... +.+++|++|+++|+.|..+++.+ + +.+ +
T Consensus 93 ~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-G----CGGGE
T ss_pred CcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-C----CCCeE
Confidence 69999999999988 56789999999999999998887664 67899999999999998777655 3 777 8
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..++|+.. ...+|+|+||+.+...... ...++++|||||+|++.+. .+..++.. . ...
T Consensus 162 ~~~~g~~~------~~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~---~~~~i~~~-------~-~~~ 219 (237)
T 2fz4_A 162 GEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIAQM-------S-IAP 219 (237)
T ss_dssp EEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHHHT-------C-CCS
T ss_pred EEEeCCCC------CcCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCCh---HHHHHHHh-------c-cCC
Confidence 88888754 2578999999987544432 1246899999999998543 23333221 1 256
Q ss_pred EEEEEcCCCCChH
Q 043190 847 RFIGLSTALANAG 859 (1492)
Q Consensus 847 ~ii~lSATl~~~~ 859 (1492)
++++||||+.+.+
T Consensus 220 ~~l~LSATp~r~D 232 (237)
T 2fz4_A 220 FRLGLTATFERED 232 (237)
T ss_dssp EEEEEEESCC---
T ss_pred EEEEEecCCCCCC
Confidence 7899999997643
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.5e-17 Score=169.54 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=100.1
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
.+++++||||++++.++.++..|.. .+.++..+||++++.+|..++
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLRE----------------------------------AGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 4567899999999999998877732 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.+++++...+...
T Consensus 74 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~~------p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVAARGIDIPDVSHVFN----FDM------PRSGDTYLHRIGRTARAG--RKGTAISLVEAHDHLL 141 (170)
Confidence 9999999999999999999999999999997 442 335889999999999987 7899999998776554
Q ss_pred HH
Q 043190 1075 YK 1076 (1492)
Q Consensus 1075 ~~ 1076 (1492)
+.
T Consensus 142 ~~ 143 (170)
T 2yjt_D 142 LG 143 (170)
Confidence 43
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=180.29 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=91.3
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEE-EEcCCCChhhHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVG-VHHAGMLRSDRGL 159 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~-~hhagl~~~~R~~ 159 (1492)
++++||||+|++.|+.+++.|.+. ...++ .+||. +|.
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~h~~----~r~- 289 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF-------------------------------------KFNVGETWSEF----EKN- 289 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT-------------------------------------TCCEEESSSCH----HHH-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCceehhhcCc----chH-
Confidence 589999999999999999888653 22366 77874 444
Q ss_pred HHHHHhCCCccEEEe----ccccccccCCCc-EEEEEeccceecCCCCCcccCchhhhhhccCCCCCC--ccceEEEEeC
Q 043190 160 TERLFSEGLLKVLVC----TATLAWGVNLPA-HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD--RSGEGIIITS 232 (1492)
Q Consensus 160 ve~~f~~g~i~vlva----T~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d--~~G~~i~~~~ 232 (1492)
++.|++|.++|||| |+++++|||+|+ +++||+ |+++.+ .+..+|+||+|||||.|.+ +.|.++++++
T Consensus 290 -~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~~p~~-~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 290 -FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPSG-PDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp -HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ESCCTT-TCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred -HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE----ECCCCC-CCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 99999999999999 999999999999 888885 665411 3667799999999999976 5899999994
Q ss_pred Ccc-HHHHHHHhc
Q 043190 233 HDK-LAYYLRLLT 244 (1492)
Q Consensus 233 ~~~-~~~~~~~~~ 244 (1492)
+.. ...+.+.++
T Consensus 364 ~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 364 DEEIFESLKTRLL 376 (414)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc
Confidence 433 234444444
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=183.51 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+......+.++||||+|++.++.+++.|.+. +..+.++||+
T Consensus 430 ~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-------------------------------------gi~~~~lh~~ 472 (664)
T 1c4o_A 430 EGIRERAARGERTLVTVLTVRMAEELTSFLVEH-------------------------------------GIRARYLHHE 472 (664)
T ss_dssp HHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTT
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCceeecCC
Confidence 344455567889999999999999999888653 1237889999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEE
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGII 229 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~ 229 (1492)
|++.+|..+++.|++|.++|||||+++++|+|+|.+++||. |+.+.. +.+..+|+||+|||||.+ .|.+++
T Consensus 473 ~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~ 545 (664)
T 1c4o_A 473 LDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNA---RGEVWL 545 (664)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEE
T ss_pred CCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCCCCCHHHHHHHHCccCcCC---CCEEEE
Confidence 99999999999999999999999999999999999888775 554332 235567999999999985 699999
Q ss_pred EeCCccHHH
Q 043190 230 ITSHDKLAY 238 (1492)
Q Consensus 230 ~~~~~~~~~ 238 (1492)
+++..+...
T Consensus 546 ~~~~~~~~~ 554 (664)
T 1c4o_A 546 YADRVSEAM 554 (664)
T ss_dssp ECSSCCHHH
T ss_pred EEcCCCHHH
Confidence 998765443
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-14 Score=177.23 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|.|.+.+..+ +.+++++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+++.. +....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~-l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRS-LSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHH-HHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHH-HhhccCe
Confidence 4899999987654 3478999999999999999999999987754 368999999999999999998876 3333255
Q ss_pred EEEEEcC
Q 043190 765 EMVEMTG 771 (1492)
Q Consensus 765 ~v~~~~g 771 (1492)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555444
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-15 Score=184.79 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=77.9
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
+.++++||||+|+++++.+++.|.+. ...++.+|| ++|.
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lhg----~~R~ 213 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA-------------------------------------GKSVVVLNR----KTFE 213 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEECCS----SSCC
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEecc----hhHH
Confidence 35789999999999999999888653 223889998 5799
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEe-ccce--------------ecCCCCCcccCchhhhhhccCCC-CCC
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GTQL--------------YDPKAGGWRDLGMLDIFGRAGRP-QFD 222 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~~~--------------~~~~~~~~~~~~~~~~~GRAGR~-~~d 222 (1492)
.+++.|++|+++|||||+++++|||+| +++||+ |+.. |+. +.+..+|.||+|||||. |
T Consensus 214 ~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~---p~~~~~~~Qr~GR~GR~g~-- 287 (440)
T 1yks_A 214 REYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL---RISASSAAQRRGRIGRNPN-- 287 (440)
T ss_dssp --------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE---ECCHHHHHHHHTTSSCCTT--
T ss_pred HHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc---ccCHHHHHHhccccCCCCC--
Confidence 999999999999999999999999999 666664 2221 332 23556799999999997 5
Q ss_pred ccceEEEEe
Q 043190 223 RSGEGIIIT 231 (1492)
Q Consensus 223 ~~G~~i~~~ 231 (1492)
..|.|++++
T Consensus 288 ~~g~~~~l~ 296 (440)
T 1yks_A 288 RDGDSYYYS 296 (440)
T ss_dssp CCCEEEEEC
T ss_pred CCceEEEEe
Confidence 579999996
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=192.26 Aligned_cols=174 Identities=17% Similarity=0.251 Sum_probs=121.5
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeec-CCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFD-SSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
..++++++||||.+ +..+...+... .+...+. ......++...+.... . ......+...+..+++
T Consensus 749 ~~~~~vl~lSATp~-p~~l~~~~~~~--~~~~~i~~~~~~r~~i~~~~~~~~---~--------~~i~~~il~~l~~g~q 814 (1151)
T 2eyq_A 749 RANVDILTLTATPI-PRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREYD---S--------MVVREAILREILRGGQ 814 (1151)
T ss_dssp HTTSEEEEEESSCC-CHHHHHHHTTT--SEEEECCCCCCBCBCEEEEEEECC---H--------HHHHHHHHHHHTTTCE
T ss_pred cCCCCEEEEcCCCC-hhhHHHHHhcC--CCceEEecCCCCccccEEEEecCC---H--------HHHHHHHHHHHhcCCe
Confidence 35689999999963 33343333322 1122221 1122234433332211 1 1122344455577899
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
++|||+++++++.+++.|.+..+ ..+++++||+|++.+|..+++.
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p-----------------------------------~~~v~~lhg~~~~~eR~~il~~ 859 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHGQMRERELERVMND 859 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEEECCSSCCHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCeEEEEeCCCCHHHHHHHHHH
Confidence 99999999999999988876421 2359999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|++|+++|||||+++++|||+|..++||. +++.. +....+.||+||+||.| ..|.|++++++++
T Consensus 860 F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~~--~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 860 FHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH--FGLAQLHQLRGRVGRSH--HQAYAWLLTPHPK 923 (1151)
T ss_dssp HHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS--SCHHHHHHHHTTCCBTT--BCEEEEEEECCGG
T ss_pred HHcCCCcEEEECCcceeeecccCCcEEEE----eCCCC--CCHHHHHHHHhccCcCC--CceEEEEEECCcc
Confidence 99999999999999999999998887773 33321 23345899999999998 6799999987653
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=180.70 Aligned_cols=122 Identities=19% Similarity=0.261 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+......+.++||||+|++.++.+++.|.+. +..+.++||+
T Consensus 436 ~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-------------------------------------gi~~~~lh~~ 478 (661)
T 2d7d_A 436 GEIQARIERNERVLVTTLTKKMSEDLTDYLKEI-------------------------------------GIKVNYLHSE 478 (661)
T ss_dssp HHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTT
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCeEEEeCC
Confidence 344455567889999999999999999888653 1237889999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEE
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGII 229 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~ 229 (1492)
+++.+|..+++.|++|.++|||||+++++|+|+|.+++||. |+.+.. +.+..+|+||+|||||. ..|.|++
T Consensus 479 ~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~ 551 (661)
T 2d7d_A 479 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARN---AEGRVIM 551 (661)
T ss_dssp CCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEE
T ss_pred CCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccCCCCHHHHHHHhCcccCC---CCCEEEE
Confidence 99999999999999999999999999999999999988875 554332 23556799999999997 4699999
Q ss_pred EeCCccHH
Q 043190 230 ITSHDKLA 237 (1492)
Q Consensus 230 ~~~~~~~~ 237 (1492)
+++..+..
T Consensus 552 ~~~~~~~~ 559 (661)
T 2d7d_A 552 YADKITKS 559 (661)
T ss_dssp ECSSCCHH
T ss_pred EEeCCCHH
Confidence 99876543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-15 Score=191.46 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=111.9
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
....++++||||. .++.++..+....+..+....+..| .|+...+. .... ...++..+.+.+..++++
T Consensus 514 ~~~~~vL~mSATp-~p~tl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~--~~~~--------~~~l~~~i~~~l~~g~qv 581 (780)
T 1gm5_A 514 GKMVDTLVMSATP-IPRSMALAFYGDLDVTVIDEMPPGR-KEVQTMLV--PMDR--------VNEVYEFVRQEVMRGGQA 581 (780)
T ss_dssp SSCCCEEEEESSC-CCHHHHHHHTCCSSCEEECCCCSSC-CCCEECCC--CSST--------HHHHHHHHHHHTTTSCCB
T ss_pred CCCCCEEEEeCCC-CHHHHHHHHhCCcceeeeeccCCCC-cceEEEEe--ccch--------HHHHHHHHHHHHhcCCcE
Confidence 3568999999995 4455554443321211111111112 23322211 1111 112234555566788999
Q ss_pred EEEEechHHHHHH----HHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHH-Hh-cccEEEEcCCCChhhHH
Q 043190 85 MVFVHSRKDTVKT----AQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIE-LF-GLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 85 lVF~~sr~~~~~~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~gv~~hhagl~~~~R~ 158 (1492)
+|||++..+.+.+ +..+.+. |.+ .+ ..+++.+||+|++++|.
T Consensus 582 lVf~~~ie~se~l~~~~a~~l~~~--------------------------------L~~~~~~~~~v~~lHG~m~~~eR~ 629 (780)
T 1gm5_A 582 FIVYPLIEESDKLNVKSAVEMYEY--------------------------------LSKEVFPEFKLGLMHGRLSQEEKD 629 (780)
T ss_dssp CCBCCCC--------CHHHHHHHS--------------------------------GGGSCC---CBCCCCSSSCCSCSH
T ss_pred EEEecchhhhhhhhHHHHHHHHHH--------------------------------HHhhhcCCCcEEEEeCCCCHHHHH
Confidence 9999987665422 1111111 001 01 24689999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.+++.|++|+++|||||+++++|||+|++++||. |+++. +....+.||+|||||.| ..|.|++++++
T Consensus 630 ~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r--~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 630 RVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER--FGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp HHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS--SCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred HHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC--CCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 9999999999999999999999999999998885 66542 23445778999999998 67999999874
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=168.57 Aligned_cols=193 Identities=17% Similarity=0.223 Sum_probs=128.5
Q ss_pred ccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE-EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 8 IRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ-YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 8 ~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
-++.|||+|+.. .+++.+..+.. ++.+ +..+|..-... ...+. . ...+... +...+.+....+.|+|
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~----vv~I-Ptnkp~~R~d~~d~vy~-t-~~eK~~a----l~~~I~~~~~~gqpVL 478 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME----VVVI-PTHKPMIRKDHDDLVFR-T-QKEKYEK----IVEEIEKRYKKGQPVL 478 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC----EEEC-CCSSCCCCEECCCEEES-S-HHHHHHH----HHHHHHHHHHHTCCEE
T ss_pred hHHeEECCCCchHHHHHHHHhCCe----EEEE-CCCCCcceeecCcEEEe-c-HHHHHHH----HHHHHHHHhhCCCCEE
Confidence 368999999986 56677766543 4433 44555433222 11111 1 1222222 1223333335688999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|++.++.+++.|.+. +....++||+....+|..+.++|+
T Consensus 479 VFt~S~e~sE~Ls~~L~~~-------------------------------------Gi~~~vLhgkq~~rE~~ii~~ag~ 521 (822)
T 3jux_A 479 VGTTSIEKSELLSSMLKKK-------------------------------------GIPHQVLNAKYHEKEAEIVAKAGQ 521 (822)
T ss_dssp EEESSHHHHHHHHHHHHTT-------------------------------------TCCCEEECSCHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHHHHC-------------------------------------CCCEEEeeCCchHHHHHHHHhCCC
Confidence 9999999999999888643 112678899988888888888888
Q ss_pred CCCccEEEeccccccccCCC--------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH-
Q 043190 166 EGLLKVLVCTATLAWGVNLP--------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL- 236 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp--------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~- 236 (1492)
.| .|+|||+.++||+|++ ....||+ |+... +...|.||+|||||.| ..|.++.+++.++.
T Consensus 522 ~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~Pe---s~r~y~qriGRTGRqG--~~G~a~~fvsleD~l 590 (822)
T 3jux_A 522 KG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TERHE---SRRIDNQLRGRAGRQG--DPGESIFFLSLEDDL 590 (822)
T ss_dssp TT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSCCS---SHHHHHHHHTTSSCSS--CCCEEEEEEETTSHH
T ss_pred CC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCCCC---CHHHHHHhhCccccCC--CCeeEEEEechhHHH
Confidence 77 5999999999999997 5567886 43221 3445899999999999 78999999877651
Q ss_pred ------HHHHH---Hh--cCCCccccchhHhHHH
Q 043190 237 ------AYYLR---LL--TSQLPIESQFISSLKD 259 (1492)
Q Consensus 237 ------~~~~~---~~--~~~~~ies~l~~~l~~ 259 (1492)
+...+ .+ ....||++.......+
T Consensus 591 ~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie 624 (822)
T 3jux_A 591 LRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIE 624 (822)
T ss_dssp HHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHH
Confidence 22222 22 2345888877665443
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-15 Score=184.17 Aligned_cols=111 Identities=17% Similarity=0.053 Sum_probs=85.6
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
+.++++||||+|+++|+.+++.|.+. ...++.+|| ++|.
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg----~~R~ 391 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKS-------------------------------------GKRVIQLSR----KTFD 391 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECT----TTHH
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHc-------------------------------------CCcEEEECh----HHHH
Confidence 35779999999999999999988653 123778887 4899
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecC-----CC--------CCcccCchhhhhhccCCCCCCccc
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDP-----KA--------GGWRDLGMLDIFGRAGRPQFDRSG 225 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~-----~~--------~~~~~~~~~~~~GRAGR~~~d~~G 225 (1492)
.+++.|++|+++|||||+++++|||+|...||..|. .++| .. .+.+..+|+||+|||||.|. ..|
T Consensus 392 ~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~-~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G 469 (618)
T 2whx_A 392 TEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRR-CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QED 469 (618)
T ss_dssp HHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCE-EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCC
T ss_pred HHHHhhcCCCcEEEEECcHHHcCcccCceEEEECcc-eecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCC
Confidence 999999999999999999999999999544444333 1221 00 02345579999999999973 369
Q ss_pred eEEEEeC
Q 043190 226 EGIIITS 232 (1492)
Q Consensus 226 ~~i~~~~ 232 (1492)
.|++++.
T Consensus 470 ~ai~l~~ 476 (618)
T 2whx_A 470 DQYVFSG 476 (618)
T ss_dssp EEEEECS
T ss_pred eEEEEcc
Confidence 9999986
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-15 Score=179.15 Aligned_cols=111 Identities=17% Similarity=0.033 Sum_probs=84.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+|+++|+.+++.|.+. ...++..|+. +|..
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~-------------------------------------g~~~~~lh~~----~~~~ 225 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS-------------------------------------GKRVIQLSRK----TFDT 225 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECTT----THHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc-------------------------------------CCeEEECCHH----HHHH
Confidence 4679999999999999999887542 1236677775 4568
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccc----eec--CCC-------CCcccCchhhhhhccCCCCCCccce
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQ----LYD--PKA-------GGWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~----~~~--~~~-------~~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
+++.|++|+++|||||+++++|||+|+ ++||+... .|| ... .+.+..+|.||+|||||.|.+ .|.
T Consensus 226 ~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~ 303 (451)
T 2jlq_A 226 EYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDD 303 (451)
T ss_dssp HGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCE
T ss_pred HHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Ccc
Confidence 999999999999999999999999999 88876321 111 100 112445799999999999942 688
Q ss_pred EEEEeCC
Q 043190 227 GIIITSH 233 (1492)
Q Consensus 227 ~i~~~~~ 233 (1492)
+++++..
T Consensus 304 ~~~~~~~ 310 (451)
T 2jlq_A 304 QYVFSGD 310 (451)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 8888754
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-15 Score=180.77 Aligned_cols=112 Identities=18% Similarity=0.113 Sum_probs=83.5
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+|+++|+.+++.|.+. ...++..|+ ++|..
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~-------------------------------------g~~v~~lh~----~~R~~ 227 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA-------------------------------------GKKVIQLNR----KSYDT 227 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEEEST----TCCCC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc-------------------------------------CCcEEecCH----HHHHH
Confidence 4789999999999999999888653 223677787 48889
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEe-ccce-----ecCCC-------CCcccCchhhhhhccCCCCCCccce
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GTQL-----YDPKA-------GGWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~~~-----~~~~~-------~~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
+++.|++|.++|||||+++++|||+|+ ++||+ |+.+ |++.. .+.+..+|+||+|||||.|. ..|.
T Consensus 228 ~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~ 305 (459)
T 2z83_A 228 EYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGD 305 (459)
T ss_dssp CGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCE
T ss_pred HHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCe
Confidence 999999999999999999999999999 66665 2111 11100 12345679999999999983 2699
Q ss_pred EEEEeCCc
Q 043190 227 GIIITSHD 234 (1492)
Q Consensus 227 ~i~~~~~~ 234 (1492)
+++++...
T Consensus 306 ~~~~~~~~ 313 (459)
T 2z83_A 306 EYHYGGAT 313 (459)
T ss_dssp EEEECSCC
T ss_pred EEEEEccc
Confidence 99998764
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-14 Score=181.66 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=86.0
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
+.++++||||+|+++++.+++.|.+. ...++.+|| ++|.
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~-------------------------------------g~~v~~lHg----~eR~ 446 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRA-------------------------------------GKRVIQLNR----KSYD 446 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECS----SSHH
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhC-------------------------------------CCeEEEeCh----HHHH
Confidence 45789999999999999999887642 223888998 4899
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEe-cc-----ceecCCC-------CCcccCchhhhhhccCCC-CCCcc
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GT-----QLYDPKA-------GGWRDLGMLDIFGRAGRP-QFDRS 224 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~-----~~~~~~~-------~~~~~~~~~~~~GRAGR~-~~d~~ 224 (1492)
.+++.|++|+++|||||+++++|||+| ++.||+ |+ ..||++. .+.+..+|.||+|||||. | ..
T Consensus 447 ~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g--~~ 523 (673)
T 2wv9_A 447 TEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS--QI 523 (673)
T ss_dssp HHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSS--CC
T ss_pred HHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCC--CC
Confidence 999999999999999999999999999 666664 21 1133221 123446799999999998 5 67
Q ss_pred ceEEEEe
Q 043190 225 GEGIIIT 231 (1492)
Q Consensus 225 G~~i~~~ 231 (1492)
|.|++++
T Consensus 524 G~ai~l~ 530 (673)
T 2wv9_A 524 GDEYHYG 530 (673)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999995
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-14 Score=169.90 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=82.4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+++++++.+++.|.+. ...++.+||+ +|..
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~v~~lhg~----~r~~ 208 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA-------------------------------------GKKVLYLNRK----TFES 208 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEESTT----THHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCeEEEeCCc----cHHH
Confidence 4679999999999999999888643 2238999987 6889
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccce------------ecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQL------------YDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~------------~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
+++.|++|+++|||||+++++|||+|...||..|+.. |+. +.+..+|.||+|||||.|.. .|.+
T Consensus 209 ~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~---p~~~~~~~Qr~GR~GR~g~~-~~~~ 284 (431)
T 2v6i_A 209 EYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPI---AITPASAAQRRGRIGRNPEK-LGDI 284 (431)
T ss_dssp HTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEE---ECCHHHHHHHHTTSSCCTTC-CCCE
T ss_pred HHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccc---cCCHHHHHHhhhccCCCCCC-CCeE
Confidence 9999999999999999999999999966664332221 221 12455799999999998842 4555
Q ss_pred EEEe
Q 043190 228 IIIT 231 (1492)
Q Consensus 228 i~~~ 231 (1492)
+++.
T Consensus 285 ~~~~ 288 (431)
T 2v6i_A 285 YAYS 288 (431)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=180.50 Aligned_cols=112 Identities=17% Similarity=0.332 Sum_probs=86.1
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC--------C
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG--------M 152 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag--------l 152 (1492)
++++||||++++.++.+++.|.+. . .+.. .+..+.++||+ |
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~----~---~l~~------------------------~g~~~~~lhg~~~~~~~~~~ 448 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITEN----E---KFAE------------------------VGVKAHHLIGAGHSSEFKPM 448 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSS----C---SCC-----------------------------CEECCCSCCCTTCCCC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhC----c---cccc------------------------cCcceEEEECCCCccCCCCC
Confidence 789999999999999999888642 0 0000 02237788998 9
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||+. ++..+|.||+|||||.| +.+++++.
T Consensus 449 ~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p---~s~~~~~Qr~GRArr~g----~~~~l~~~ 517 (699)
T 4gl2_A 449 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLV---TNEIAMVQARGRARADE----STYVLVAH 517 (699)
T ss_dssp CHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCC---CCHHHHHHHHTTSCSSS----CEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCC---CCHHHHHHHcCCCCCCC----ceEEEEEe
Confidence 9999999999999999999999999999999999999996 7753 46778999999998865 55555554
Q ss_pred Cc
Q 043190 233 HD 234 (1492)
Q Consensus 233 ~~ 234 (1492)
.+
T Consensus 518 ~~ 519 (699)
T 4gl2_A 518 SG 519 (699)
T ss_dssp SS
T ss_pred CC
Confidence 33
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=171.34 Aligned_cols=112 Identities=25% Similarity=0.375 Sum_probs=93.1
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC--------C
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA--------G 151 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha--------g 151 (1492)
.++++||||++++.++.+++.|.+. ...+..+|| +
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~~~~ 402 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD-------------------------------------GIKAKRFVGQASKENDRG 402 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEEECCSSCC-----
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc-------------------------------------CCCcEEEecccccccccc
Confidence 5789999999999999998888653 223777888 9
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
|++++|..+++.|++|.++|||||+++++|+|+|+.++||. ||+ +|+...+.||+|||||.| . |.+++++
T Consensus 403 ~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~----~d~---~~~~~~~~Qr~GR~~R~g--~-g~~~~l~ 472 (494)
T 1wp9_A 403 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEP---VPSAIRSIQRRGRTGRHM--P-GRVIILM 472 (494)
T ss_dssp --CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSC---CHHHHHHHHHHTTSCSCC--C-SEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE----eCC---CCCHHHHHHHHhhccCCC--C-ceEEEEE
Confidence 99999999999999999999999999999999999999985 553 246667999999999998 4 9999998
Q ss_pred CCccHHH
Q 043190 232 SHDKLAY 238 (1492)
Q Consensus 232 ~~~~~~~ 238 (1492)
.....+.
T Consensus 473 ~~~t~ee 479 (494)
T 1wp9_A 473 AKGTRDE 479 (494)
T ss_dssp ETTSHHH
T ss_pred ecCCHHH
Confidence 8776543
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=172.98 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=74.9
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.++..|.+.......... .+.+.+...+||+|++++|..
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------------~~~g~~~~~~~~~~~~~~R~~ 442 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPG-------------------------ILTGRGRTNRATGMTLPAQKC 442 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEE-------------------------ECCC-----------------
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeee-------------------------EEEecCCcccccccCHHHHHH
Confidence 3589999999999999999988754211000000 011345677899999999999
Q ss_pred HHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 160 TERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 160 ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++...|.||+|| ||. ..|.+++++++.+...
T Consensus 443 ~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~----~d~---p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 443 VLEAFRASGDNNILIATSVADEGIDIAECNLVIL----YEY---VGNVIKMIQTRGR-GRA---RDSKCFLLTSSADVIE 511 (555)
T ss_dssp ---------CCSEEEECCCTTCCEETTSCSEEEE----ESC---CSSCCCEECSSCC-CTT---TSCEEEEEESCHHHHH
T ss_pred HHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE----eCC---CCCHHHHHHhcCc-CcC---CCceEEEEEcCCCHHH
Confidence 9999999 99999999999999999999999997 664 3466779999999 887 5699999998776543
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-14 Score=176.41 Aligned_cols=124 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.|.+... ...+. ...+.+.+...+||||++++|.
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~----~~~~~---------------------~~~~~g~~~~~~~~~~~~~~R~ 442 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPI----LNYIK---------------------PGVLMGRGRRDQTTGMTLPSQK 442 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSG----GGSCC---------------------EEC-------------------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCC----cceee---------------------eeEEEccCCcccccccCHHHHH
Confidence 4568999999999999999888754210 00000 0001244567789999999999
Q ss_pred HHHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 159 LTERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++...|.||+|| ||. ..|.++++++..+.+
T Consensus 443 ~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~---p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 443 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY---SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----------CCEEEEEC-----------CEEEE----ETC---CSCHHHHHHC------------CCEEEEESCHHHH
T ss_pred HHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE----eCC---CCCHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99999999 99999999999999999999999996 775 3577789999999 997 469999999877654
Q ss_pred H
Q 043190 238 Y 238 (1492)
Q Consensus 238 ~ 238 (1492)
.
T Consensus 512 ~ 512 (556)
T 4a2p_A 512 E 512 (556)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-13 Score=164.86 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=116.8
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE--EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
++.|||+|... .+++.+..+.. ++.+ +..+|+.-..+ ++.. . ...+...+ ...+.+....+.|+|
T Consensus 369 kl~GmTGTa~te~~e~~~iY~l~----vv~I-Ptn~p~~r~d~~d~v~~--~-~~~K~~al----~~~i~~~~~~~~pvL 436 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYNMQ----VVTI-PTNRPVVRDDRPDLIYR--T-MEGKFKAV----AEDVAQRYMTGQPVL 436 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCC----EEEC-CCSSCCCCEECCCEEES--S-HHHHHHHH----HHHHHHHHHHTCCEE
T ss_pred hhccCCcccchhHHHHHHHhCCc----eEEe-cCCCCcccccCCcEEEe--C-HHHHHHHH----HHHHHHHHhcCCcEE
Confidence 57899999975 56676666543 3333 44555532211 1111 1 12222221 222222234678999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|++.++.++..|.+. +......||++.+.+|..+.++|+
T Consensus 437 Vft~s~~~se~Ls~~L~~~-------------------------------------gi~~~vLhg~~~~rEr~ii~~ag~ 479 (844)
T 1tf5_A 437 VGTVAVETSELISKLLKNK-------------------------------------GIPHQVLNAKNHEREAQIIEEAGQ 479 (844)
T ss_dssp EEESCHHHHHHHHHHHHTT-------------------------------------TCCCEEECSSCHHHHHHHHTTTTS
T ss_pred EEECCHHHHHHHHHHHHHC-------------------------------------CCCEEEeeCCccHHHHHHHHHcCC
Confidence 9999999999999888643 123678899999999988888887
Q ss_pred CCCccEEEeccccccccCCC--------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 166 EGLLKVLVCTATLAWGVNLP--------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp--------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.| +|+|||+.++||+|++ ...+||+ |+... +...|.||+|||||.| ..|.++.+++.++
T Consensus 480 ~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn----~d~p~---s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 480 KG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG----TERHE---SRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp TT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE----SSCCS---SHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred CC--eEEEeCCccccCcCccccchhhhcCCcEEEE----ecCCC---CHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 77 6999999999999999 7889997 44322 4455999999999999 7899998887554
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-13 Score=174.00 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=61.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.+++.|.+... ...+. . ..+.++|...+||||++++|..
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~----~~~~~---~------------------~~l~G~~~~~~h~~~~~~eR~~ 451 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPK----LSFLK---P------------------GILTGRGKTNQNTGMTLPAQKC 451 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTT----CCSCC---E------------------EC--------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCC----ccccc---e------------------eEEEccCCCccccCCCHHHHHH
Confidence 467899999999999999988875310 00000 0 0012345566699999999999
Q ss_pred HHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 160 TERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 160 ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+++.|++ |.++|||||+++++|||+|++++||+ ||+. ++..+|.||+|| ||. ..|.++++++..+...
T Consensus 452 v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~----~d~p---~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVIL----YEYV---GNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ---------CCSCSEEEESSCCC---CCCSEEEE----ESCC-----CCCC-------------CCCEEEEEESCHHHHH
T ss_pred HHHHHHhcCCccEEEEechhhcCCcCccCCEEEE----eCCC---CCHHHHHHhhcc-CcC---CCceEEEEecCCCHHH
Confidence 9999998 99999999999999999999999997 7653 466779999999 996 4699999998776543
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=175.24 Aligned_cols=125 Identities=19% Similarity=0.153 Sum_probs=83.6
Q ss_pred CcccEEEEccc-CCCh---HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 6 RMIRIVGLSAT-LPNY---LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 6 ~~~riv~lSAT-l~n~---~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
++.|+++|||| .|+. .-+..++... .......+-.+.+.++... . ...+ ...+.. .+
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~~~~~~l~i~------v~~~~~~~~~i~~~~~~~~--k----~~~L----~~ll~~---~~ 309 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPLLFRDLLNFT------VGRLVSVARNITHVRISSR--S----KEKL----VELLEI---FR 309 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTHHHHHHTCCC------CCBCCCCCCCEEEEEESCC--C----HHHH----HHHHHH---HC
T ss_pred CCceEEEEcCCCCcHHHHHHHhhcceeEE------eccCCCCcCCceeEEEecC--H----HHHH----HHHHHh---cC
Confidence 67999999999 5542 2234444422 1112222334444443331 1 1111 111111 35
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEE-EEcCCCChhhHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVG-VHHAGMLRSDRGLT 160 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~-~hhagl~~~~R~~v 160 (1492)
+++||||+|++.|+.++..|.+. ...++ .+|| +|+.
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~-------------------------------------g~~~~~~lhg-----~rr~- 346 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF-------------------------------------KFNVGETWSE-----FEKN- 346 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT-------------------------------------TCCEEESSSS-----HHHH-
T ss_pred CCEEEEECcHHHHHHHHHHHHhC-------------------------------------CCCeeeEecC-----cHHH-
Confidence 89999999999999999888653 22366 7787 3556
Q ss_pred HHHHhCCCccEEEe----ccccccccCCCc-EEEEEe
Q 043190 161 ERLFSEGLLKVLVC----TATLAWGVNLPA-HTVVIK 192 (1492)
Q Consensus 161 e~~f~~g~i~vlva----T~tla~Gvnlp~-~~vVI~ 192 (1492)
++.|++|+++|||| |+++++|||+|+ +++||+
T Consensus 347 l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~ 383 (1104)
T 4ddu_A 347 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF 383 (1104)
T ss_dssp HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE
T ss_pred HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE
Confidence 99999999999999 999999999999 899997
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=162.18 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=129.6
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||+|... .++|.+..+.. ++.+ +..+|+.-..+-..+... ...+...+ ...+.+....+.|+|||
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~----vv~I-Ptn~p~~R~d~~d~v~~~-~~~K~~al----~~~i~~~~~~gqpvLVf 447 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLD----TVVV-PTNRPMIRKDLPDLVYMT-EAEKIQAI----IEDIKERTAKGQPVLVG 447 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCE----EEEC-CCSSCCCCEECCCEEESS-HHHHHHHH----HHHHHHHHTTTCCEEEE
T ss_pred hhhcCCCCchhHHHHHHHHhCCc----EEEc-CCCCCceeecCCcEEEeC-HHHHHHHH----HHHHHHHhcCCCCEEEE
Confidence 68899999986 66677777543 4434 466776543321011111 12222221 22222333567899999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.+++.|.+.. ....+.||++...+|..+.++|+.|
T Consensus 448 t~sie~se~Ls~~L~~~g-------------------------------------i~~~vLnak~~~rEa~iia~agr~G 490 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAG-------------------------------------IKHNVLNAKFHANEAAIVAQAGYPA 490 (853)
T ss_dssp ESSHHHHHHHHHHHHHTT-------------------------------------CCCEECCTTCHHHHHHHHHTTTSTT
T ss_pred ECcHHHHHHHHHHHHHCC-------------------------------------CCEEEecCChhHHHHHHHHhcCCCC
Confidence 999999999998887531 2266789999999999999999999
Q ss_pred CccEEEeccccccccCCCcE-------------------------------------EEEEeccceecCCCCCcccCchh
Q 043190 168 LLKVLVCTATLAWGVNLPAH-------------------------------------TVVIKGTQLYDPKAGGWRDLGML 210 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~~-------------------------------------~vVI~~~~~~~~~~~~~~~~~~~ 210 (1492)
.|+|||+.++||+|++.. .+||+ |+.. -+...|.
T Consensus 491 --~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~p---es~riy~ 561 (853)
T 2fsf_A 491 --AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TERH---ESRRIDN 561 (853)
T ss_dssp --CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSCC---SSHHHHH
T ss_pred --eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccCC---CCHHHHH
Confidence 699999999999999863 68886 3321 1344599
Q ss_pred hhhhccCCCCCCccceEEEEeCCccH-------HHHHHHh-----cCCCccccchhHhHHH
Q 043190 211 DIFGRAGRPQFDRSGEGIIITSHDKL-------AYYLRLL-----TSQLPIESQFISSLKD 259 (1492)
Q Consensus 211 ~~~GRAGR~~~d~~G~~i~~~~~~~~-------~~~~~~~-----~~~~~ies~l~~~l~~ 259 (1492)
|++|||||.| ..|.++.+++.++. ++..+++ ....||++.......+
T Consensus 562 qr~GRTGRqG--d~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 620 (853)
T 2fsf_A 562 QLRGRSGRQG--DAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIA 620 (853)
T ss_dssp HHHTTSSGGG--CCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHH
T ss_pred hhccccccCC--CCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHH
Confidence 9999999999 78999988875541 2333222 2235677776554433
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=163.43 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=81.4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||+|+++++.+++.|.+. ...+..+||+|++++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-------------------------------------g~~v~~lHG~l~q~e--- 434 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-------------------------------------GINAVAYYRGLDVSV--- 434 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-------------------------------------TCCEEEECTTSCGGG---
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-------------------------------------CCcEEEecCCCCHHH---
Confidence 5789999999999999999888642 224889999999986
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEe-ccce-------ecCCCC------CcccCchhhhhhccCCCCCCccc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GTQL-------YDPKAG------GWRDLGMLDIFGRAGRPQFDRSG 225 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~~~-------~~~~~~------~~~~~~~~~~~GRAGR~~~d~~G 225 (1492)
|+++..+|||||+++++|||+| +++||. |... |||..+ +.+..+|+||+||||| | ..|
T Consensus 435 ----r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G 506 (666)
T 3o8b_A 435 ----IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRG 506 (666)
T ss_dssp ----SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCE
T ss_pred ----HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCC
Confidence 4567779999999999999998 565553 2111 333221 2244579999999999 7 679
Q ss_pred eEEEEeCCcc
Q 043190 226 EGIIITSHDK 235 (1492)
Q Consensus 226 ~~i~~~~~~~ 235 (1492)
. +.++++.+
T Consensus 507 ~-i~lvt~~e 515 (666)
T 3o8b_A 507 I-YRFVTPGE 515 (666)
T ss_dssp E-EEESCCCC
T ss_pred E-EEEEecch
Confidence 9 88887655
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=171.47 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=61.3
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.|.+.. ....+. . ..+.+.+...+||||++.+|.
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~----~~~~~~---~------------------~~l~G~~~~~~hg~~~~~eR~ 683 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENP----ILNYIK---P------------------GVLMGRGRRDQTTGMTLPSQK 683 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCS----TTCSCC---C------------------EEC------------------
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCc----cccccc---c------------------eEEEecCCcccCCCCCHHHHH
Confidence 346899999999999999988886421 000000 0 001244567789999999999
Q ss_pred HHHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 159 LTERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++...|.||+|| ||. ..|.++++++..+..
T Consensus 684 ~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~---p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY---SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 752 (797)
T ss_dssp ----------CCSEEEEECC-------CCCSEEEE----ESC---CSCHHHHHTC-----------CCCEEEEECCHHHH
T ss_pred HHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCC---CCCHHHHHHhcCC-CCC---CCceEEEEEeCCcHH
Confidence 99999999 99999999999999999999999996 775 3577789999999 997 579999999877654
Q ss_pred H
Q 043190 238 Y 238 (1492)
Q Consensus 238 ~ 238 (1492)
.
T Consensus 753 e 753 (797)
T 4a2q_A 753 E 753 (797)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=163.81 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=68.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHhCCCccEEEec-cccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 144 AVGVHHAGMLRSDRGLTERLFSEGLLKVLVCT-ATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 144 gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT-~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
.++++||++++++|..+++.|++|..+||||| +++++|+|+|++++||. +++. ++...+.||+|||||.|
T Consensus 373 ~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~~---~s~~~~~Q~~GR~gR~g-- 443 (510)
T 2oca_A 373 KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHGV---KSKIIVLQTIGRVLRKH-- 443 (510)
T ss_dssp SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSCC---CSCCHHHHHHHHHHTTT--
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCCC---CCHHHHHHHHhcccccC--
Confidence 38999999999999999999999999999999 99999999999999995 5543 35567999999999999
Q ss_pred ccceEEEEeC
Q 043190 223 RSGEGIIITS 232 (1492)
Q Consensus 223 ~~G~~i~~~~ 232 (1492)
..|.++++++
T Consensus 444 ~~~~~v~i~~ 453 (510)
T 2oca_A 444 GSKTIATVWD 453 (510)
T ss_dssp CCCCCCEEEE
T ss_pred CCCceEEEEE
Confidence 4453444443
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-13 Score=182.78 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=54.6
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+|+++|+.+++.|.+. ..++++||+| ..+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--------------------------------------~~v~~lhg~~-----~~~ 311 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--------------------------------------FRIGIVTATK-----KGD 311 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--------------------------------------SCEEECTTSS-----SHH
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--------------------------------------cCeeEEeccH-----HHH
Confidence 678999999999999988766431 2389999998 378
Q ss_pred HHHHhCCCccEEEe----ccccccccCCCcE-EEEEe
Q 043190 161 ERLFSEGLLKVLVC----TATLAWGVNLPAH-TVVIK 192 (1492)
Q Consensus 161 e~~f~~g~i~vlva----T~tla~Gvnlp~~-~vVI~ 192 (1492)
++.|++|.++|||| |+++++|||+|++ ++||+
T Consensus 312 l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 312 YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred HHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 89999999999999 9999999999994 77776
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-12 Score=156.39 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=128.3
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE--EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
++.|||+|... .++|.+..+.. ++.+ +..+|+.-..+ ++... ...+...+ ...+.+....+.|+|
T Consensus 397 kL~GMTGTa~te~~Ef~~iY~l~----vv~I-Ptn~p~~R~d~~d~v~~t---~~~K~~al----~~~i~~~~~~gqpvL 464 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIYKLG----VVSI-PTNMPMIREDQSDLIYKT---EEAKYIAV----VDDVAERYAKGQPVL 464 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCE----EEEC-CCSSCCCCEECCCEEESC---HHHHHHHH----HHHHHHHHHTTCCEE
T ss_pred hhhccccCchhHHHHHHHHhCCC----eEEe-CCCCCcccccCCcEEEeC---HHHHHHHH----HHHHHHHHhcCCcEE
Confidence 68899999976 56677766543 4333 45666543321 11111 12222221 223333335678999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|+..++.+++.|.+.. ....+.||+....+|..+.++|+
T Consensus 465 Vft~Sie~sE~Ls~~L~~~G-------------------------------------i~~~vLnak~~~rEa~iia~agr 507 (922)
T 1nkt_A 465 IGTTSVERSEYLSRQFTKRR-------------------------------------IPHNVLNAKYHEQEATIIAVAGR 507 (922)
T ss_dssp EEESCHHHHHHHHHHHHHTT-------------------------------------CCCEEECSSCHHHHHHHHHTTTS
T ss_pred EEECCHHHHHHHHHHHHHCC-------------------------------------CCEEEecCChhHHHHHHHHhcCC
Confidence 99999999999998887531 22678899999889999999999
Q ss_pred CCCccEEEeccccccccCCCcE----------------------------------------------------EEEEec
Q 043190 166 EGLLKVLVCTATLAWGVNLPAH----------------------------------------------------TVVIKG 193 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~----------------------------------------------------~vVI~~ 193 (1492)
.| .|+|||+.++||+|++.. .+||+
T Consensus 508 ~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~- 584 (922)
T 1nkt_A 508 RG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG- 584 (922)
T ss_dssp TT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE-
T ss_pred CC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe-
Confidence 88 699999999999999863 67886
Q ss_pred cceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH-------HHHHHH---h--cCCCccccchhHhHHH
Q 043190 194 TQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL-------AYYLRL---L--TSQLPIESQFISSLKD 259 (1492)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~-------~~~~~~---~--~~~~~ies~l~~~l~~ 259 (1492)
|+.. -+...|.|++||+||.| ..|.++.+++.++. +...++ + ....||++.......+
T Consensus 585 ---te~p---es~riy~qr~GRTGRqG--dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie 654 (922)
T 1nkt_A 585 ---TERH---ESRRIDNQLRGRSGRQG--DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIK 654 (922)
T ss_dssp ---CSCC---SSHHHHHHHHHTSSGGG--CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHH
T ss_pred ---ccCC---CCHHHHHHHhcccccCC--CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 3321 13345999999999999 78999988876552 122222 2 2345788876554333
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-13 Score=163.49 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=90.0
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.| ++.++||++++.+|.
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l------------------------------------------~~~~~~g~~~~~~R~ 384 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVF------------------------------------------LIPAITHRTSREERE 384 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHT------------------------------------------TCCBCCSSSCSHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHh------------------------------------------CcceeeCCCCHHHHH
Confidence 35789999999999988877654 155789999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC-ccceEEEEeCCccHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD-RSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d-~~G~~i~~~~~~~~~ 237 (1492)
.+++.|++|.++|||||+++++|+|+|+.++||. |++. ++...+.||+|||||.|.. ....++.+++.+..+
T Consensus 385 ~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~----~~~~---~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 385 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSGS---GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp THHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECCS---SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE----ECCC---CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999999999999999999996 6543 4666799999999999954 344555566655443
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=154.15 Aligned_cols=117 Identities=16% Similarity=0.041 Sum_probs=87.2
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.|+.+++.|.+...... ..-...+..+||+++ ++|.
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~-----------------------------~~~~~~~~~i~g~~~-~~r~ 486 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLS-----------------------------RKHPDYVARVTSEEG-KIGK 486 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHH-----------------------------TTCTTSEEECSSTTH-HHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhh-----------------------------ccCCCeEEEEeCCCh-HHHH
Confidence 3457999999999999999999876533200 000123777888875 4799
Q ss_pred HHHHHHhCCCcc---EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 159 LTERLFSEGLLK---VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 159 ~ve~~f~~g~i~---vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
.+++.|++|..+ |||||+++++|||+|++++||. |++. ++...|.||+|||||.+.|..+..+++.+
T Consensus 487 ~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~~~---~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 487 GHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----ARVV---NSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp HHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ESCC---CCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred HHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE----EecC---CChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 999999998876 8899999999999999999995 5543 35566999999999988542333333433
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=133.79 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=81.4
Q ss_pred HHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhh
Q 043190 77 SLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSD 156 (1492)
Q Consensus 77 ~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~ 156 (1492)
....+.++||||+++..++.++..|.+.. +..+..+||++++.+
T Consensus 108 ~~~~~~kvlIFs~~~~~~~~l~~~L~~~~------------------------------------g~~~~~l~G~~~~~~ 151 (271)
T 1z5z_A 108 ALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGELSKKE 151 (271)
T ss_dssp HHHTTCCEEEEESCHHHHHHHHHHHHHHH------------------------------------CSCCCEECTTSCHHH
T ss_pred HHhCCCeEEEEeccHHHHHHHHHHHHHhc------------------------------------CCcEEEEECCCCHHH
Confidence 33578899999999999888887775421 223678899999999
Q ss_pred HHHHHHHHhCC-Ccc-EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 157 RGLTERLFSEG-LLK-VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 157 R~~ve~~f~~g-~i~-vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|..+.+.|++| .++ +|+||.++++|+|+++.+.||. ||+ +|+...+.|++||++|.|......++.++...
T Consensus 152 R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~---~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 152 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR---WWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC---CSCTTTC--------------CCEEEEEEETT
T ss_pred HHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC---CCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999 788 7899999999999999999986 554 24556699999999999965555556666655
Q ss_pred cHH
Q 043190 235 KLA 237 (1492)
Q Consensus 235 ~~~ 237 (1492)
..+
T Consensus 225 TiE 227 (271)
T 1z5z_A 225 TLE 227 (271)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-11 Score=161.08 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=61.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||++++.++.+++.|.+...-.+ ... ..+.+.+...+||+|++.+|..
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-ik~------------------------~~l~G~~~~~~hg~m~~~eR~~ 684 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNY-IKP------------------------GVLMGRGRRDQTTGMTLPSQKG 684 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSS-CCC------------------------EEC-------------------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccc-cce------------------------eEEecCCCcccCCCCCHHHHHH
Confidence 468999999999999999988865310000 000 0012345667899999999999
Q ss_pred HHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 160 TERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 160 ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++..+|.||+|| ||. ..|.++++++..+.+
T Consensus 685 il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~---p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 685 VLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY---SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 752 (936)
T ss_dssp ---------CCSEEEEECC------CCCCSEEEE----ESC---CSCSHHHHCC-----------CCCEEEEESCHHHH
T ss_pred HHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCC---CCCHHHHHHhcCC-CCC---CCCEEEEEEeCCCHH
Confidence 9999999 99999999999999999999999996 775 3577789999999 997 469999998876554
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=131.06 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.+.++||||+++..+..++..|... .+..+..+||+++..+|..+++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~---------------------------------~g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKE---------------------------------LNTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------------------------------HCSCCCEECTTSCHHHHHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHh---------------------------------cCCcEEEEECCCCHHHHHHHHH
Confidence 5789999999999888887766331 2567888999999999999999
Q ss_pred HHhcC-Cce-EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 996 LFANN-KIQ-VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 996 ~f~~g-~~~-vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.|++| ..+ +|++|+++++|+|++++++||+ ||+ +.++..+.||+||++|.|......+|.++..+.
T Consensus 158 ~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 158 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp HHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC------CSCTTTC--------------CCEEEEEEETTS
T ss_pred HhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC------CCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99998 777 7899999999999999999998 553 235778999999999999766666777777654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=151.71 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=92.2
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.++..|.+. .+..++.+||+|++.+|.
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~------------------------------------~g~~~~~lhG~~~~~~R~ 544 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLRER------------------------------------EGIRAAVFHEGMSIIERD 544 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTT------------------------------------TCCCEEEECTTSCTTHHH
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHH------------------------------------cCCcEEEEeCCCCHHHHH
Confidence 45789999999999999888877531 133489999999999999
Q ss_pred HHHHHHhCCC--ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEGL--LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g~--i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+++.|++|. ++|||||+++++|+|+|..++||. ||+. |+...|.|++||+||.|.......+.+.....
T Consensus 545 ~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~----~d~p---~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 545 RAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM----FDLP---FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp HHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC----SSCC---SSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred HHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE----ecCC---CCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 9999999998 999999999999999999999986 6653 46677999999999999443223444344443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-10 Score=138.03 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=92.6
Q ss_pred HHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCC
Q 043190 74 VVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGML 153 (1492)
Q Consensus 74 ~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~ 153 (1492)
+.+...++.++||||+++..++.++..|.+.. ..++.++||+++
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~g~~~ 377 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGELS 377 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH------------------------------------TCCCCEEETTSC
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhh------------------------------------CCCeEEEECCCC
Confidence 33344578899999999999888877775421 234788999999
Q ss_pred hhhHHHHHHHHhCC-Ccc-EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 154 RSDRGLTERLFSEG-LLK-VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 154 ~~~R~~ve~~f~~g-~i~-vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
+++|..+.+.|++| ..+ +|+||++++.|+|+|+.++||. ||+ +|+...+.|++||++|.|......++.++
T Consensus 378 ~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d~---~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv 450 (500)
T 1z63_A 378 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR---WWNPAVEDQATDRVYRIGQTRNVIVHKLI 450 (500)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SSC---CSCC---CHHHHTTTTTTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE----eCC---CCCcchHHHHHHHHHHcCCCCeeEEEEEE
Confidence 99999999999999 566 7999999999999999988886 554 24566699999999999976666667666
Q ss_pred CCccHH
Q 043190 232 SHDKLA 237 (1492)
Q Consensus 232 ~~~~~~ 237 (1492)
.....+
T Consensus 451 ~~~tie 456 (500)
T 1z63_A 451 SVGTLE 456 (500)
T ss_dssp ETTSHH
T ss_pred eCCCHH
Confidence 655443
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-08 Score=125.46 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=93.3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||+++..++.++..|... +..+...||+++.++|..
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~-------------------------------------g~~~~~l~G~~~~~~R~~ 457 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR-------------------------------------RYLYVRLDGTMSIKKRAK 457 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH-------------------------------------TCCEEEECSSCCHHHHHH
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC-------------------------------------CCCEEEEeCCCCHHHHHH
Confidence 4789999999999888877766542 234778899999999999
Q ss_pred HHHHHhCCCcc---EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 160 TERLFSEGLLK---VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 160 ve~~f~~g~i~---vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
+.+.|++|... +|+||.+++.|+|+++.+.||. ||+ .|+...+.|++||++|.|......++.++.....
T Consensus 458 ~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~----~d~---~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FDP---DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp HHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CSC---CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred HHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE----ECC---CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 99999999764 8999999999999999999986 664 3566779999999999997666667766665543
Q ss_pred H
Q 043190 237 A 237 (1492)
Q Consensus 237 ~ 237 (1492)
+
T Consensus 531 E 531 (644)
T 1z3i_X 531 E 531 (644)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-08 Score=127.74 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=94.8
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||..+.....++..|... +..+...||+++..+|.
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~-------------------------------------g~~~~~i~G~~~~~eR~ 612 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIK-------------------------------------GINFQRLDGTVPSAQRR 612 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHH-------------------------------------TCCCEEESTTSCHHHHH
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHH
Confidence 56789999999999888877777543 23478899999999999
Q ss_pred HHHHHHhCCCc---cEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEGLL---KVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g~i---~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+.+.|++|.. .+|+||.+++.|||||+.++||. ||+ .|+...+.|++|||+|.|......++.++....
T Consensus 613 ~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~----~D~---~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 613 ISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI----FDS---DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE----SSC---CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred HHHHHhhCCCCCceEEEEecccccCCCCccccceEEE----ecC---CCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999665 49999999999999998888885 664 356667999999999999777777777777665
Q ss_pred HH
Q 043190 236 LA 237 (1492)
Q Consensus 236 ~~ 237 (1492)
.+
T Consensus 686 iE 687 (800)
T 3mwy_W 686 VE 687 (800)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.5e-07 Score=116.64 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=56.7
Q ss_pred hhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC--ccceEEEEeC
Q 043190 155 SDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD--RSGEGIIITS 232 (1492)
Q Consensus 155 ~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d--~~G~~i~~~~ 232 (1492)
.+|..+.+.|++|.++|||+|+.+++|+|+|...+++ +|. +++...++|++||+||.+.+ +.|.++-+..
T Consensus 636 ~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDk---pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 636 NYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDK---NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EES---CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----Ecc---CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 3689999999999999999999999999999998776 553 23556799999999999753 3466665554
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-05 Score=101.67 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCch--HHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKT--ISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT--~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
++.|.+++..++ +++.+++.||+|+||| +.++++.+..+....+.++++++||..+|.++.+.+...
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 789999999988 6889999999999999 455666666543334679999999999999887766553
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7e-05 Score=95.46 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..||+-|.+|+..++....-.+|.||+|+|||.+..-.|.+.+.. +.++|+++||...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 469999999999988555678999999999999877666666654 78999999999999998887654
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=91.10 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
.+..+++.|.+++..++ .+..++|.||+|+|||.+....+.... ..++.++++++||...+.++.+.+.+
T Consensus 177 ~~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp TSCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHHHHHHHH-TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 34579999999999988 567899999999999987654444333 33478999999999999988777643
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=92.34 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
.+..+|+.|.+|+..++ .+..++|.||+|+|||.+....+...+.. ++.++++++||...+.++.+++.+
T Consensus 357 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp TSCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 34679999999999988 56688999999999998765544433322 368999999999999998887765
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00016 Score=89.82 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHHHh-cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 73 KVVDSLR-QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 73 ~~~~~~~-~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
.+.+.+. .++.+|||++|.+..+.+++.+.. ..+-. ++.
T Consensus 375 ~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~---------------------------------------~~~~~-q~~ 414 (540)
T 2vl7_A 375 LLKRIYENSSKSVLVFFPSYEMLESVRIHLSG---------------------------------------IPVIE-ENK 414 (540)
T ss_dssp HHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT---------------------------------------SCEEE-STT
T ss_pred HHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc---------------------------------------CceEe-cCC
Confidence 3444433 356899999999999888754421 11322 333
Q ss_pred CChhhHHHHHHHHhCCCccEEE--eccccccccCCCc----EEEEEeccceecCCCC----------------Cccc---
Q 043190 152 MLRSDRGLTERLFSEGLLKVLV--CTATLAWGVNLPA----HTVVIKGTQLYDPKAG----------------GWRD--- 206 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlv--aT~tla~Gvnlp~----~~vVI~~~~~~~~~~~----------------~~~~--- 206 (1492)
. ..|..+.+.|++|. .||+ ||..++.|||+|+ .+.||...-+|.+... ++.+
T Consensus 415 ~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~ 491 (540)
T 2vl7_A 415 K--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIH 491 (540)
T ss_dssp T--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred C--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHH
Confidence 2 57889999999875 5766 8999999999997 3444433344443311 1111
Q ss_pred ----CchhhhhhccCCCCCCccceEEEEe
Q 043190 207 ----LGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 207 ----~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
..+.|-+||+-|...| .|..+++-
T Consensus 492 ~~~~~~~~Q~~GR~iR~~~D-~g~v~llD 519 (540)
T 2vl7_A 492 DLTAIVIKQTIGRAFRDPND-YVKIYLCD 519 (540)
T ss_dssp HHHHHHHHHHHHHHCCSTTC-CCEEEEES
T ss_pred HHHHHHHHHHhCCcccCCCc-cEEEEEEc
Confidence 2244689999998655 67665553
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00015 Score=88.31 Aligned_cols=67 Identities=18% Similarity=0.362 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHhhhcC----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHT----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
.|..|++-|.+++..++.. ...++|.|+.|||||.+.. .+...+...+...+++++||...|.++.+
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 5778999999999876532 3499999999999998664 44444444333589999999987766544
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00031 Score=90.42 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
...+++.|.+++..++ .+...+|.||+|+|||.+..-.+ ..+...++.++++++||...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~~~i-~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHHHHH-HHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4569999999999988 56788999999999998765443 333333578999999999999887776643
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00062 Score=84.50 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
.+++.|.+++..++ +++.++|.||.|+|||+... .++..+.. .+.++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTK-AVADLAES-LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHH-HHHHHHHH-TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHH-HHHHHHHh-cCCeEEEecCcHHHHHHhHh
Confidence 48999999999988 67899999999999998643 34444443 47899999999988776443
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0074 Score=75.64 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=52.5
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-|||.|... .++|.+..+.. ++ .-++.||+--...--.+-.. ...+... +.+.+.+....|.|+||+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~----Vv-~IPTn~p~~R~D~~d~vy~t-~~~K~~A----Iv~eI~~~~~~GqPVLVg 449 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD----VV-VVPTNRPVIRKDFPDVVYRT-EKGKFYA----VVEEIAEKYERGQPVLVG 449 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC----EE-ECCCSSCCCCEEEEEEEESS-HHHHHHH----HHHHHHHHHHHTCCEEEE
T ss_pred HheecCCCchHHHHHHHHHhCCC----EE-EcCCCCCcccccCCCeEEcC-HHHHHHH----HHHHHHHHHHCCCCEEEE
Confidence 68899999875 66677776654 33 34567776433321111111 1222221 223344445779999999
Q ss_pred EechHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLV 102 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~ 102 (1492)
|.|-...+.+++.|.
T Consensus 450 T~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 450 TISIEKSERLSQMLK 464 (997)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHh
Confidence 999999999999887
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0041 Score=78.11 Aligned_cols=176 Identities=15% Similarity=0.237 Sum_probs=94.7
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC--CchhHHHH-HhhHHHHHHHHHHH-hcCCc
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE--PNFAARNE-LLSEICYKKVVDSL-RQGHQ 83 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 83 (1492)
.-+|++|||+.....+++.|+.. ...+.+++.+.+-.. .++.... ..+..+.. .... ..+.+.+.+ ..++.
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~--~~~~~~~spf~~~~~--~~~~~~~~~~~~~~r~~~~~~~-~~~~i~~l~~~~~g~ 450 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFE--IPFKKIGEIFPPENR--YIAYYDGVSSKYDTLDEKELDR-MATVIEDIILKVKKN 450 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCC--CCEEECCCCSCGGGE--EEEEECCC-------CHHHHHH-HHHHHHHHHHHHCSC
T ss_pred CeEEEEccCCCcHHHHHHHhCCC--ceeeecCCCCCHHHe--EEEEeCCCCCcCCCCCHHHHHH-HHHHHHHHHHhCCCC
Confidence 35799999999988999999875 233334443322111 1111111 11111111 1111 122333333 23567
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||++|.+..+.++..+. . . +.. -.-|++..+|..+.+.
T Consensus 451 ~lvlF~Sy~~l~~v~~~l~-~------~--------------------------------~~~-~~q~~~~~~~~~ll~~ 490 (620)
T 4a15_A 451 TIVYFPSYSLMDRVENRVS-F------E--------------------------------HMK-EYRGIDQKELYSMLKK 490 (620)
T ss_dssp EEEEESCHHHHHHHTSSCC-S------C--------------------------------CEE-CCTTCCSHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH-h------c--------------------------------chh-ccCCCChhHHHHHHHH
Confidence 9999999998877765442 0 0 001 1345666789999999
Q ss_pred HhCCCccEEEecc--ccccccCCCc---EEEEEeccceecCCC--------------CCcc-c------CchhhhhhccC
Q 043190 164 FSEGLLKVLVCTA--TLAWGVNLPA---HTVVIKGTQLYDPKA--------------GGWR-D------LGMLDIFGRAG 217 (1492)
Q Consensus 164 f~~g~i~vlvaT~--tla~Gvnlp~---~~vVI~~~~~~~~~~--------------~~~~-~------~~~~~~~GRAG 217 (1492)
|+ |.-.||+||. .+..|||+|. ..|||-|...-.|+. .+|. . ....|-+||+=
T Consensus 491 f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlI 569 (620)
T 4a15_A 491 FR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLI 569 (620)
T ss_dssp HT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTC
T ss_pred hc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccc
Confidence 99 8889999985 9999999985 568887654322210 0111 1 11346889999
Q ss_pred CCCCCccceEEEE
Q 043190 218 RPQFDRSGEGIII 230 (1492)
Q Consensus 218 R~~~d~~G~~i~~ 230 (1492)
|...| .|..+++
T Consensus 570 R~~~D-~G~v~ll 581 (620)
T 4a15_A 570 RSAED-TGACVIL 581 (620)
T ss_dssp CSTTC-CEEEEEE
T ss_pred cCCCc-eEEEEEE
Confidence 97655 5766665
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=73.61 Aligned_cols=186 Identities=16% Similarity=0.077 Sum_probs=100.9
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCc----eEeecCCcccccceEEEEEeeC---CchhHHHHHhhHHHHHHHHHHHh-
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMG----LFFFDSSYRPIPLAQQYIGISE---PNFAARNELLSEICYKKVVDSLR- 79 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~----~~~~~~~~rpv~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~- 79 (1492)
..+|++|||++....+++-|+...+.. .+.+++.+ -++..+.++. ..+..+...+.+.+.+.+.+.+.
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf----~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV----SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC----SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC----CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999998888888888752221 11223333 1222222221 11111101111122233333332
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++.+|||++|.+..+.+++. . ...+-...-+++ +..
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~--------~--------------------------------~~~v~~q~~~~~---~~~ 428 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR--------I--------------------------------SLPKYVESEDSS---VED 428 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT--------C--------------------------------CSSEEECCSSCC---HHH
T ss_pred CCCCEEEEecCHHHHHHHHHh--------c--------------------------------CCcEEEcCCCCC---HHH
Confidence 356899999999988777641 0 111333333444 345
Q ss_pred HHHHHhCCCccEEEec--cccccccCCC------cEEEEEeccceecC-------------CCC--Cc-ccC------ch
Q 043190 160 TERLFSEGLLKVLVCT--ATLAWGVNLP------AHTVVIKGTQLYDP-------------KAG--GW-RDL------GM 209 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT--~tla~Gvnlp------~~~vVI~~~~~~~~-------------~~~--~~-~~~------~~ 209 (1492)
+.+.|+.+.-.||+|| ..+..|||+| ...|||-|...-.+ ..| +| ..+ .+
T Consensus 429 ~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l 508 (551)
T 3crv_A 429 LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTI 508 (551)
T ss_dssp HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 6777853334899998 6999999999 47788876543222 101 22 111 13
Q ss_pred hhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 210 LDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 210 ~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
.|-+||+=|...| .|..+++-..-....|.+
T Consensus 509 ~Qa~GRlIR~~~D-~G~v~llD~R~~~~~~~~ 539 (551)
T 3crv_A 509 KQAIGRAIRDVND-KCNVWLLDKRFESLYWKK 539 (551)
T ss_dssp HHHHHTTCCSTTC-EEEEEEESGGGGSHHHHH
T ss_pred HHHhccCccCCCc-cEEEEEeehhcccchhhh
Confidence 4678999997655 676666543333334443
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.024 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
.|+|+|...+..+. ..+.+++..+-+.|||.++...++..+...++..+++++|++.-|..+++.+...+..
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 58999999998764 4467899999999999987666555433345779999999999998888777765543
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.04 Score=69.02 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
.|+|+|...+..+. ..+.+++.++-|+|||.+....++..+...++..+++++|++..|.+.++.++..+...
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 48999999998773 56788999999999999776555544444456799999999999999888777665443
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.024 Score=59.01 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=29.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
+.-.++.||.|+|||+.++..+.+.... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeecc
Confidence 5678899999999999876665555433 67899999984
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.019 Score=73.48 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..||+-|.+++.. .+..++|.|+.|||||.+...-+...+... +..+++++++|+..+.++.+++.+.++..
T Consensus 8 ~~Ln~~Q~~av~~---~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~--- 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA---PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS--- 81 (647)
T ss_dssp TTCCHHHHHHHTC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC---
T ss_pred hcCCHHHHHHHhC---CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc---
Confidence 4699999999983 467899999999999998877676666542 34689999999999999888877654210
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
...+.|+|...| ..+++.......+ .-..-|+|+..
T Consensus 82 -----------------~~~~~v~Tfhs~~~~il~~~~~~~~~-~~~~~i~~~~~ 118 (647)
T 3lfu_A 82 -----------------QGGMWVGTFHGLAHRLLRAHHMDANL-PQDFQILDSED 118 (647)
T ss_dssp -----------------CTTCEEEEHHHHHHHHHHHTTGGGTC-CTTCEEECHHH
T ss_pred -----------------cCCcEEEcHHHHHHHHHHHHHHHhCC-CCCCEEeCHHH
Confidence 135788898886 3344432211111 12345677665
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.051 Score=56.37 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=25.8
Q ss_pred CHHHHHHHHhhh--------cCCCcEEEecCCCCCchHHHHH
Q 043190 690 NPIQTQIFHILY--------HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 690 ~~~Q~~~i~~~~--------~~~~~vli~apTGsGKT~~~~l 723 (1492)
++.|.+++..+. ..++.+++.||+|+|||+.+-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 457777776543 3578999999999999987643
|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
Probab=95.05 E-value=0.023 Score=47.85 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=46.2
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQR 1373 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~ 1373 (1492)
.+|.+|||+++..+.+|.++||.|+++|+.++.+++..+.+ +.....|...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999988744 5567777766654
|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
Probab=95.03 E-value=0.017 Score=48.65 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=50.2
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCC
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFP 544 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P 544 (1492)
.+|.+|| ++++..+.+|.++|+ |+++++.++.+++..+.+ ++..+.+++..++.+|
T Consensus 7 ~~l~~L~-Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~ 64 (70)
T 1wcn_A 7 DDLLNLE-GVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 64 (70)
T ss_dssp HHHHSST-TCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHcC-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHcc
Confidence 4688999 999999999999999 999999999999999988 7888888888877533
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.035 Score=70.98 Aligned_cols=90 Identities=22% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.|||-|.+++.. .+.+++|.|+.|||||.+...-+...+.. .+..++++++.|+..|.++.+++.+.++..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~---- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK---- 74 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT----
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc----
Confidence 489999999986 36789999999999999877666665543 235789999999999999888876654221
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhh-hHhhhc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKW-DGISRN 799 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 799 (1492)
...++.|+|...| ..+++.
T Consensus 75 ---------------~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 ---------------EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp ---------------TTTTSEEEEHHHHHHHHHHH
T ss_pred ---------------cccCCEEEeHHHHHHHHHHH
Confidence 0124678898876 334443
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.055 Score=56.40 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=31.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.++-.++.||.|||||+.++..+.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 4567889999999999988766666543 378999999984
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.044 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=32.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.+.-+++.||+|+|||+.++..+.+.... +.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEecc
Confidence 56788999999999999887776666443 67899998875
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.068 Score=68.70 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
..|||-|.+++.. .+.+++|.|+.|||||.+...-+...+... +..++++++.|+..|.++.+++.+.+
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4599999999886 357899999999999998877676666532 34689999999999999888877655
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.068 Score=53.36 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++.+++.||+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57899999999999998653
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.07 Score=72.85 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.+|+-|.+++.. .+++++|.|..|||||.+...-++..+... +..+++++++|++.|.++.+++...+...++
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 489999999886 478999999999999999887777777653 3468999999999999999998887654421
Q ss_pred CEEEEEcCCCC-cchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 764 KEMVEMTGDYT-PDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 764 ~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
. ..+.. .......-.++-|+|-..| ..++++......+. -.+-|+||..
T Consensus 87 ~-----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~-~~f~~~d~~~ 137 (1232)
T 3u4q_A 87 Q-----RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLD-PGFRIADQTE 137 (1232)
T ss_dssp H-----STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCC-TTCEECCHHH
T ss_pred c-----CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCC-CCCeeCCHHH
Confidence 1 00000 0000011235678998886 44444422211111 1223677754
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.058 Score=44.46 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCch-HHHHHHHhcC
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFP-VSRLHQDLQR 1373 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~-~~~i~~~~~~ 1373 (1492)
.+.|..+||||+.+.+.|-+ .+.|++++.+++.+++..+++... ++.|+++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 35688999999999998875 467999999999999999999888 8999998853
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.071 Score=43.94 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=46.7
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCch-HHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPG-GRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~i~~~~~ 541 (1492)
+.|..+| +||+...+.|-++--|++++.+++.+|+.++++ ... ++.|+++++
T Consensus 4 s~L~~Ip-GIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 4 DFLLKMP-GVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIH 56 (63)
T ss_dssp HHHHTST-TCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHcCC-CCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHh
Confidence 5688999 999999999988766999999999999999988 666 999999886
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.14 Score=53.72 Aligned_cols=41 Identities=10% Similarity=-0.043 Sum_probs=31.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+.-.+++||.|||||+.++-.+.+.... +.+++++.|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccC
Confidence 45567789999999999888777776543 789999999864
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.2 Score=56.63 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=61.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccH-HHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLK-AIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r-~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+.++++.||+|+|||.++-.. ++.+... +....+++--.. .--.+.+..+.+.+. |.++ +++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v-~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~---~~~--- 113 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDV-MDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENL---CGD--- 113 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHH-HHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----CC---
T ss_pred CCCeEEEECCCCCCHHHHHHHH-HHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCC---Cch---
Confidence 4578999999999999876543 4444321 123455553211 111222333333231 2211 000
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.+-+.+..++..... .-....++++||+|.+. . ...+..++ + +......+.-+|+.++|+
T Consensus 114 ------------~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~-q~~L~~l~---~-~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 114 ------------ISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S-EKILQYFE---K-WISSKNSKLSIICVGGHN 173 (318)
T ss_dssp ------------CCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C-THHHHHHH---H-HHHCSSCCEEEEEECCSS
T ss_pred ------------HHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c-chHHHHHH---h-cccccCCcEEEEEEecCc
Confidence 011223333332100 12345689999999886 2 11222222 2 222234467888999998
Q ss_pred CChH
Q 043190 856 ANAG 859 (1492)
Q Consensus 856 ~~~~ 859 (1492)
.+..
T Consensus 174 d~~~ 177 (318)
T 3te6_A 174 VTIR 177 (318)
T ss_dssp CCCH
T ss_pred ccch
Confidence 6644
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.083 Score=62.05 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=52.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
+.+-.++.|+.|||||.... +.+. ..+.++++||++++.+..+ .+... |. . ..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~----~~~~---~~~~lVlTpT~~aa~~l~~----kl~~~-~~--------~-------~~ 212 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEIL----SRVN---FEEDLILVPGRQAAEMIRR----RANAS-GI--------I-------VA 212 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHH----HHCC---TTTCEEEESCHHHHHHHHH----HHTTT-SC--------C-------CC
T ss_pred cccEEEEEcCCCCCHHHHHH----HHhc---cCCeEEEeCCHHHHHHHHH----Hhhhc-Cc--------c-------cc
Confidence 34567899999999999643 2222 2567999999999876444 34221 11 0 11
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
...-|.|-+++. ++. .. ......+++||||+-++
T Consensus 213 ~~~~V~T~dsfL--~~~-~~-~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 213 TKDNVRTVDSFL--MNY-GK-GARCQFKRLFIDEGLML 246 (446)
T ss_dssp CTTTEEEHHHHH--HTT-TS-SCCCCCSEEEEETGGGS
T ss_pred ccceEEEeHHhh--cCC-CC-CCCCcCCEEEEeCcccC
Confidence 123467777643 221 11 11124789999999977
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.33 Score=50.84 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=30.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.|.-.+++||-|||||+..+..+.+.... +.+++++.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccC
Confidence 56778999999999998776665554433 688999999764
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.097 Score=45.76 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=46.7
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCch-HHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPG-GRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~i~~~~~ 541 (1492)
+.|..+| +||+...++|-++.-|++++.+++.+||.++++ .+. ++.|+++++
T Consensus 18 s~L~~Ip-GIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~ 70 (84)
T 1z00_B 18 DFLLKMP-GVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIH 70 (84)
T ss_dssp HHHHTCS-SCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHT
T ss_pred HHHHhCC-CCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHH
Confidence 4688999 999999999988766999999999999999998 556 999999986
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.078 Score=46.36 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=46.7
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCch-HHHHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFP-VSRLHQDLQR 1373 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~-~~~i~~~~~~ 1373 (1492)
+.|..+||||+.+.+.|-+ .+.|+++|..++.+++..+++... ++.|+++++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 4688999999999998875 467999999999999999999888 8999998863
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.04 E-value=0.17 Score=53.62 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+.-.+++||-|||||+.++-.+.+.... +.+++++.|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCC
Confidence 46677899999999999888777776543 789999999864
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.46 Score=50.59 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.0
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.27 Score=53.61 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=29.9
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
..|..+++.||+|+|||+.+...+...... +.+++|+.-.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 467899999999999999876655554433 5678887654
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.44 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=17.8
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.++++.||+|+|||..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467999999999999987643
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.21 Score=51.60 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=31.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.++-.++.||.|||||+-.+..+-+.... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 45678999999999998777776665543 6889999887
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.25 Score=58.29 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
...++++|++|+|||+.+.-.+.. +.. .+.+++++. |.|.-+.++...|... .|+.+......
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~-l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~----~gvpv~~~~~~--------- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY-FQK-RGYKVGVVCSDTWRPGAYHQLRQLLDR----YHIEVFGNPQE--------- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHT-TTCCEEEEECCCSSTHHHHHHHHHHGG----GTCEEECCTTC---------
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH-HHH-CCCeEEEEeCCCcchhHHHHHHHHHHh----cCCcEEecCCC---------
Confidence 347889999999999876544333 333 356666665 6677666666555432 25544322111
Q ss_pred CCcEEEECchhh-hHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 782 SADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..|..+ ...+... .-..++++|||.+=.+..+ ..+...++.+.....+..-++.++||..
T Consensus 165 ------~dp~~i~~~al~~a----~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 ------KDAIKLAKEGVDYF----KSKGVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp ------CCHHHHHHHHHHHH----HHTTCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred ------CCHHHHHHHHHHHH----HhCCCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 122221 1112211 0124789999998544211 1222223322222234556677777753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=92.66 E-value=0.25 Score=58.22 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
+..++++||+|+|||+.+...+.. +.. .+.+++++. +.|.-+.++...+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~-l~~-~G~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF-YKK-RGYKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH-HHH-TTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH-cCCeEEEEecCccchhHHHHHHHHHH
Confidence 357888999999999876543332 233 356666554 555555555554443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.33 Score=55.62 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+..+++.||+|+|||..+-. +...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~-~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR-GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT-TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC-CCEEEEEEH
Confidence 46899999999999987653 33333322 456666653
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.1 Score=57.47 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhH
Q 043190 1147 SRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226 (1492)
Q Consensus 1147 ~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~ 1226 (1492)
.+.+.++++.|...|+|+.++ .+|++|+.++.+|++|..+++++.+.... +...++.|.|..++ .++.+|..+..
T Consensus 17 ~~~l~~A~~~L~~LgAld~~g---~lT~lG~~ma~lPl~P~lakmLl~a~~~~-c~~~~l~iaA~Ls~-~~~f~~p~~~~ 91 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDEG---LLTRLGRRMAEFPLEPMLCKMLIMSVHLG-CSEEMLTIVSMLSV-QNVFYRPKDKQ 91 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTTS---CBCHHHHHHTTSCSCHHHHHHHHHHHHTT-CHHHHHHHHHHHTS-SCCBCCCGGGH
T ss_pred HHHHHHHHHHHHHcCCcCCCC---CccHHHHHHHhCCCCHHHHHHHHHhhhcC-CHHHHHHHHHHHCC-CccccCCchhH
Confidence 456789999999999996443 57999999999999999999998775544 45556555544333 45666665543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.32 Score=58.25 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.+.+++.||+|+|||..+-...-......++..++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4689999999999999765333222222335667776543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.13 Score=58.61 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=78.9
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch---
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL--- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~--- 777 (1492)
..|.-++|.|++|+|||..+...+..... .+..++|+..--. ..|+..++..... ++... ...|..+...
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls~~~---~v~~~~l~~g~Ls~~e~~~ 117 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALSDLT---SINMHDLESGRLDDDQWEN 117 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHHHHH---CCCHHHHHHTCCCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHHHhh---CCCHHHHhcCCCCHHHHHH
Confidence 46788999999999999987766655544 3678888865432 3344444432221 11110 0123222211
Q ss_pred -----hccCCCcEEEE-Cc----hhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhcc
Q 043190 778 -----MALLSADIIIS-TP----EKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 778 -----~~~~~~~Iiv~-Tp----e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~ 842 (1492)
......++.|- +| +.+...+++.... ...+++||||-.+.+.. .+...+..+...|+.+...+
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel 195 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL 195 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc
Confidence 01112345553 33 3333334332111 11689999999998743 24455667777777776544
Q ss_pred CCceEEEEEcCC
Q 043190 843 ERAVRFIGLSTA 854 (1492)
Q Consensus 843 ~~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 196 --~vpVi~lsQl 205 (338)
T 4a1f_A 196 --EIPIIALVQL 205 (338)
T ss_dssp --TSCEEEEEEC
T ss_pred --CCeEEEEEec
Confidence 6667777654
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.57 Score=53.78 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCHHHHHHHHhhh---cCCC---cEEEecCCCCCchHHHHHHH
Q 043190 689 FNPIQTQIFHILY---HTDN---NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 689 l~~~Q~~~i~~~~---~~~~---~vli~apTGsGKT~~~~l~i 725 (1492)
+.|+|.+++..+. .+++ .+++.||.|+|||..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 4688888776543 2333 48999999999998876443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.51 Score=50.86 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.|..+++.||+|+|||+.+...+...... +.+++|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEc
Confidence 57889999999999998765444333322 556777653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.21 Score=60.17 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=72.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcchh---
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDLM--- 778 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~~--- 778 (1492)
.|.-++|.|++|+|||..+...+...... .+.+++|+..--. ..|+..++.... .|+.... ..|.......
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s-~~~l~~r~~~~~---~~~~~~~l~~g~l~~~~~~~~ 276 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMS-AQQLVMRMLCAE---GNINAQNLRTGKLTPEDWGKL 276 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSC-HHHHHHHHHHHH---HTCCHHHHHTSCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC-HHHHHHHHHHHH---cCCCHHHHhcCCCCHHHHHHH
Confidence 68899999999999998877665554432 2557888764322 233333332111 0111100 1222221110
Q ss_pred -----ccCCCcEEEEC-----chhhhHhhhcccCccccCcccEEEEecccccCCC------CccHHHHHHHHHHHhhhcc
Q 043190 779 -----ALLSADIIIST-----PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE------RGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 779 -----~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~------~g~~~~~i~~~l~~~~~~~ 842 (1492)
.....++.+.. .+.+....+.... -..+++||||+.+.+... +...+..+...++.+....
T Consensus 277 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~---~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~ 353 (454)
T 2r6a_A 277 TMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ---ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL 353 (454)
T ss_dssp HHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHT---TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 01133455543 3333333333211 135889999999987521 2234456666666665433
Q ss_pred CCceEEEEEcC
Q 043190 843 ERAVRFIGLST 853 (1492)
Q Consensus 843 ~~~~~ii~lSA 853 (1492)
+..+|++|-
T Consensus 354 --~i~vi~~sq 362 (454)
T 2r6a_A 354 --EVPVIALSQ 362 (454)
T ss_dssp --TCCEEEEEC
T ss_pred --CCeEEEEec
Confidence 556666654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.28 Score=58.97 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|.-++|+|++|+|||..+...+...... .+.+++|+..--. ..|+..++..... ++... ...|....+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~-~~~l~~R~~~~~~---~i~~~~l~~g~l~~~~~~~~ 273 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMP-AAQLTLRMMCSEA---RIDMNRVRLGQLTDRDFSRL 273 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSC-HHHHHHHHHHHHT---TCCTTTCCGGGCCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhCCCCCHHHHHHH
Confidence 67889999999999998777666555432 2567888765422 2344444322111 21110 0122222111
Q ss_pred ----hccCCCcEEEEC-----chhhhHhhhcccCccccCcccEEEEecccccCCC--------CccHHHHHHHHHHHhhh
Q 043190 778 ----MALLSADIIIST-----PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--------RGPILEVIVSRMRYISS 840 (1492)
Q Consensus 778 ----~~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--------~g~~~~~i~~~l~~~~~ 840 (1492)
.......+.+-. ++.+...+++... -..+++||||..+.+... +...+..+...++.+..
T Consensus 274 ~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~---~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAk 350 (444)
T 2q6t_A 274 VDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS---QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALAR 350 (444)
T ss_dssp HHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH---HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 011133455542 2333333333211 135889999999987432 11234456666666655
Q ss_pred ccCCceEEEEEcC
Q 043190 841 QTERAVRFIGLST 853 (1492)
Q Consensus 841 ~~~~~~~ii~lSA 853 (1492)
.. ++.+|++|-
T Consensus 351 e~--~v~vi~lsq 361 (444)
T 2q6t_A 351 EL--GIPIIALSQ 361 (444)
T ss_dssp HH--TSCEEEEEE
T ss_pred Hh--CCeEEEEec
Confidence 43 566777764
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.17 Score=62.63 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.+|.-|.+++..++.. ....++.|+-|.|||.+.-+.+-.. . ..+++.+|+.+-+....+ + . +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~----~~~~vtAP~~~a~~~l~~-~---~----~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-A----GRAIVTAPAKASTDVLAQ-F---A----GE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-S----SCEEEECSSCCSCHHHHH-H---H----GG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-H----hCcEEECCCHHHHHHHHH-H---h----hC--
Confidence 5889999999887741 3467999999999997666655543 2 346999999886553222 1 1 10
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
.|-+..|+.+ ... ..+.+++|||||=.+. -+.+..++. ..
T Consensus 240 -----------------~i~~~~Pd~~---~~~------~~~~dlliVDEAAaIp---~pll~~ll~-----------~~ 279 (671)
T 2zpa_A 240 -----------------KFRFIAPDAL---LAS------DEQADWLVVDEAAAIP---APLLHQLVS-----------RF 279 (671)
T ss_dssp -----------------GCCBCCHHHH---HHS------CCCCSEEEEETGGGSC---HHHHHHHHT-----------TS
T ss_pred -----------------CeEEeCchhh---hhC------cccCCEEEEEchhcCC---HHHHHHHHh-----------hC
Confidence 1333456532 221 3357899999998773 222333322 22
Q ss_pred EEEEEcCCCCCh
Q 043190 847 RFIGLSTALANA 858 (1492)
Q Consensus 847 ~ii~lSATl~~~ 858 (1492)
..|+||.|+..+
T Consensus 280 ~~v~~~tTv~GY 291 (671)
T 2zpa_A 280 PRTLLTTTVQGY 291 (671)
T ss_dssp SEEEEEEEBSST
T ss_pred CeEEEEecCCcC
Confidence 347778887654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.42 Score=54.22 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.47 E-value=1.1 Score=46.04 Aligned_cols=21 Identities=38% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
..++++.||+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 568999999999999876543
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.27 Score=57.90 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
.+.+++.||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.27 E-value=0.44 Score=58.48 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+.++++||+|+|||..+-. +.+.+ +..++.+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~-la~~l----~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHL-VAQEL----GYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHH-HHHHT----TCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHc----CCCEEEEeC
Confidence 36899999999999997653 33332 445555543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.27 Score=58.00 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=17.6
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
...++++.||+|+|||.++-.
T Consensus 147 ~~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357999999999999987643
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=90.92 E-value=1 Score=51.11 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=74.3
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCC--CCcc--
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGD--YTPD-- 776 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~--~~~~-- 776 (1492)
..|.-++|+|++|+|||..+...+...... +.+++|+.--- -..|+..++..... ++.... ..|. ....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE~-s~~~l~~R~~~~~~---~i~~~~l~~~~~~l~~~~~ 139 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM-GKKENIKRLIVTAG---SINAQKIKAARRDFASEDW 139 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESSS-CHHHHHHHHHHHHT---TCCHHHHHSCHHHHCSSCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECCC-CHHHHHHHHHHHHc---CCCHHHHhcCCCCCCHHHH
Confidence 467899999999999998877666665543 47888887542 23334444332211 111100 0111 1100
Q ss_pred ------hhccCCCcEEEEC-----chhhhHhhhcccCccccCccc--EEEEecccccCCC-----CccHHHHHHHHHHHh
Q 043190 777 ------LMALLSADIIIST-----PEKWDGISRNWHSRNYVKKVG--LMILDEIHLLGAE-----RGPILEVIVSRMRYI 838 (1492)
Q Consensus 777 ------~~~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~i~--liViDEaH~l~~~-----~g~~~~~i~~~l~~~ 838 (1492)
........+.+.. ++.+...+++... -..++ +||||-++.+... +...+..+...++.+
T Consensus 140 ~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~---~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~l 216 (315)
T 3bh0_A 140 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR---KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 216 (315)
T ss_dssp HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH---TSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0011133555542 2333333333211 12578 9999999977421 113445666667666
Q ss_pred hhccCCceEEEEEcCC
Q 043190 839 SSQTERAVRFIGLSTA 854 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSAT 854 (1492)
.... ++.++++|-.
T Consensus 217 Ak~~--~i~vi~lsql 230 (315)
T 3bh0_A 217 AREL--DVVVIALSQL 230 (315)
T ss_dssp HHHH--TCEEEEEECC
T ss_pred HHHh--CCeEEEEeec
Confidence 5543 5667777653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=1.1 Score=48.37 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..+++.||+|+|||..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3789999999999987643
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.55 Score=55.14 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.++++.||+|+|||..+-.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 457899999999999987653
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.27 E-value=0.19 Score=55.30 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhH
Q 043190 314 RALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393 (1492)
Q Consensus 314 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e 393 (1492)
.+.+..|++.|...|+|+.+ + .+|++|+.||.++++|..++++......+ +...++.+.|...+ .++.+|+.+
T Consensus 17 ~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~-c~~~~l~iaA~Ls~-~~~f~~p~~ 89 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLG-CSEEMLTIVSMLSV-QNVFYRPKD 89 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTT-CHHHHHHHHHHHTS-SCCBCCCGG
T ss_pred HHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcC-CHHHHHHHHHHHCC-CccccCCch
Confidence 57888999999999999632 3 69999999999999999999999876544 45566666554432 456666555
Q ss_pred HHH
Q 043190 394 QNE 396 (1492)
Q Consensus 394 ~~~ 396 (1492)
+++
T Consensus 90 ~~~ 92 (270)
T 3i4u_A 90 KQA 92 (270)
T ss_dssp GHH
T ss_pred hHH
Confidence 443
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=90.23 E-value=0.37 Score=55.12 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999999764
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.05 E-value=0.84 Score=52.11 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=15.7
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||+|+|||..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 799999999999987643
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.32 Score=58.06 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=75.8
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCC--CCcch-
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGD--YTPDL- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~--~~~~~- 777 (1492)
..|.-++|.|++|+|||..++..+...... +.+++|++---. ..|+..++..... |+.... ..|. .....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~~~~---~i~~~~l~~g~~~l~~~~~ 268 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIVTAG---SINAQKIKAARRDFASEDW 268 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHHHHS---CCCHHHHHHTGGGTCCSCH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhcccCCCCHHHH
Confidence 367899999999999999887777666554 678888865422 2233333322111 111000 1121 11110
Q ss_pred -------hccCCCcEEEE-----CchhhhHhhhcccCccccCccc--EEEEecccccCCC-----CccHHHHHHHHHHHh
Q 043190 778 -------MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVG--LMILDEIHLLGAE-----RGPILEVIVSRMRYI 838 (1492)
Q Consensus 778 -------~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~--liViDEaH~l~~~-----~g~~~~~i~~~l~~~ 838 (1492)
..+....+.|- |++.+...+++.... ..++ +||||=.+.+... +...+..+...++.+
T Consensus 269 ~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~l 345 (444)
T 3bgw_A 269 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 345 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 01113455553 233333333332111 2578 9999999977422 222344566666666
Q ss_pred hhccCCceEEEEEcCC
Q 043190 839 SSQTERAVRFIGLSTA 854 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSAT 854 (1492)
.... ++.++++|-.
T Consensus 346 Ake~--~v~vi~lsql 359 (444)
T 3bgw_A 346 AREL--DVVVIALSQL 359 (444)
T ss_dssp HHHH--TCEEEEEEEC
T ss_pred HHHh--CCeEEEEecC
Confidence 5543 6677777754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.48 Score=53.05 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
....+++.||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 56789999999999998764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.29 Score=56.87 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
..+.+++.||+|+|||..+-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 457899999999999997653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.8 Score=48.76 Aligned_cols=35 Identities=31% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.|.-+++.||+|+|||+.+...+. . .+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEEC
Confidence 578899999999999987665544 2 2677888764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.52 E-value=0.69 Score=54.39 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=23.6
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
++++.||+|+|||..+- .+...+....+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhcCeeEEEEe
Confidence 79999999999999764 344444332134566664
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=1 Score=49.83 Aligned_cols=20 Identities=45% Similarity=0.401 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
..++++.||+|+|||..+-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45899999999999997653
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.02 E-value=0.79 Score=53.16 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+|+.||+|+|||+.+-
T Consensus 181 ~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHH
Confidence 35789999999999998753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.68 E-value=1.2 Score=52.06 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCC--CceEEEEc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQS--DMKVVYIA 741 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~--~~~~l~i~ 741 (1492)
+..+++.||+|+|||..+-. +...+.... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhcCCceEEEEE
Confidence 56899999999999987654 333332211 34555554
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=88.64 E-value=0.5 Score=54.68 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+..++|.||+|+|||..++..+...... +.+++|+..-..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCC
Confidence 56789999999999999877666555433 568888876543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.38 E-value=1.4 Score=48.38 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+++.||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45689999999999998764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.64 Score=50.46 Aligned_cols=42 Identities=17% Similarity=0.053 Sum_probs=28.8
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccC----CCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~~~~l~i~P~ 743 (1492)
..+..+++.||+|+|||+.+...+...+... .+..++|+.-.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3678999999999999998766555433211 14677777543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.48 Score=54.04 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3689999999999998764
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.01 E-value=0.74 Score=52.47 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.5
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999987653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=87.94 E-value=0.48 Score=54.64 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.++.+++.||+|+|||..++..+...... +.+++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 57889999999999999887766655443 56888887643
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=87.72 E-value=2.1 Score=48.69 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.3
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.+++.||+|+|||..+..
T Consensus 50 ~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp EEEECSSTTSSHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHH
Confidence 467788899999987643
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.38 E-value=0.44 Score=52.03 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.|..++++|++|+|||..+...+.+.... .+..++|+.-.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeeccc
Confidence 57899999999999998877666554433 25667777643
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=0.86 Score=55.06 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
....+++.||+|+|||+++-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 45689999999999999764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=87.26 E-value=0.83 Score=52.57 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=30.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.++.+++.||+|+|||+.+...+...... +.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 57889999999999999877766655443 6788888654
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=87.24 E-value=0.47 Score=54.08 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=15.6
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 699999999999987643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=0.87 Score=52.74 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999999765
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.79 Score=54.06 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+-+|+.||+|+|||+.+-
T Consensus 214 ~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34789999999999999754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.63 E-value=1.4 Score=50.55 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHhhhcCCC--cEEEecCCCCCchHHHHH
Q 043190 696 IFHILYHTDN--NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 696 ~i~~~~~~~~--~vli~apTGsGKT~~~~l 723 (1492)
.+...+..++ ++++.||+|+|||..+..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 3333444554 399999999999987653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=86.52 E-value=2.4 Score=47.42 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDW 754 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~ 754 (1492)
.++.+.+.||+|+|||+.+....... ....+.+++++. |.+..+.++...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~~D~~r~~a~eqL~~~ 156 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFITTDTYRIAAVEQLKTY 156 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEECCCSSTTHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecCcccchHHHHHHHH
Confidence 46788999999999998665433222 211255665553 3444444444433
|
| >1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A | Back alignment and structure |
|---|
Probab=86.33 E-value=0.33 Score=40.68 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=42.1
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1322 LWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1322 L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
+.+..|+++..+++|...|+.|+++++..+.+++..+ +++....++.+.++
T Consensus 8 f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 5666799999999999999999999999999999886 45555666665554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=86.26 E-value=2.1 Score=48.02 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
.++.+.+.||+|+|||+.+...... +.. .+++++++. +.|.-+.++...|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~-l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM-FVD-EGKSVVLAAADTFRAAAIEQLKIWGE 156 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH-HHH-TTCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH-HHh-cCCEEEEEccccccHHHHHHHHHHHH
Confidence 3557889999999999765433322 222 255665543 344444444455544
|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
Probab=86.15 E-value=0.25 Score=46.00 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.6
Q ss_pred CcccccC--CCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1320 SALWMFP--CMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1320 ~~L~qlp--~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
.++-.|+ |+++..+++|.++|+.|+.+++..+++++..+ +++....+|.+.++++
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4566677 99999999999999999999999999999876 5677788888888765
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.95 E-value=3.1 Score=46.72 Aligned_cols=42 Identities=2% Similarity=0.036 Sum_probs=25.3
Q ss_pred cccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 804 NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 804 ~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
......+++||||+|.+... ..+.++.-+. ..+....+|+.+
T Consensus 78 p~~~~~kvviIdead~lt~~---a~naLLk~LE----ep~~~t~fIl~t 119 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQQ---AANAFLKALE----EPPEYAVIVLNT 119 (305)
T ss_dssp CSSSSSEEEEETTGGGBCHH---HHHHTHHHHH----SCCTTEEEEEEE
T ss_pred cccCCceEEEeccHHHhCHH---HHHHHHHHHh----CCCCCeEEEEEE
Confidence 33557899999999988422 2333443332 334566666665
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=85.71 E-value=3.6 Score=45.61 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccC---------CCceEEEEcccH
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---------SDMKVVYIAPLK 744 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~---------~~~~~l~i~P~r 744 (1492)
..|..++|.||+|||||+.+...+... ... ...+++|+...-
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCC
Confidence 478899999999999999776555432 221 135677776443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.59 E-value=0.93 Score=52.01 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=30.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~L 746 (1492)
.+..++|.||+|+|||+.+...+..... .+++++|+.....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccccc
Confidence 4678999999999999877655544333 26788888765543
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.42 E-value=1 Score=53.05 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=16.4
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+-+++.||+|+|||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999999764
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=85.25 E-value=3.2 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=17.8
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
.+++.||+|+|||..+.. +.+.+.
T Consensus 40 ~~ll~G~~G~GKT~la~~-la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL-LAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhC
Confidence 589999999999987743 344443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.14 E-value=4.9 Score=46.24 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=24.7
Q ss_pred cCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 806 l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
..+.+++|+||+|.+... ..+.++..+.. ......+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~L~~~---~~~~L~~~le~----~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKD---AQAALRRTMEK----YSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSCHH---HHHHHHHHHHH----STTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccCHH---HHHHHHHHHHh----hcCCCEEEEEeCCH
Confidence 346789999999986422 23334443432 23456777766554
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.07 E-value=1.9 Score=51.41 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.++++.||+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999999764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.53 E-value=0.69 Score=64.33 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHhhhc-----CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 697 FHILYH-----TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 697 i~~~~~-----~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
++.++. .+++++++||+|+|||..+...+.+.... +.+++|+...-++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 1469 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCH
Confidence 555553 57899999999999999987777766543 788999987654433
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=84.29 E-value=1.1 Score=51.46 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=16.5
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||..+-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5899999999999997643
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.20 E-value=1.7 Score=50.61 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+-+|+.||+|+|||+.+-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 4789999999999999753
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.70 E-value=0.68 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.9
Q ss_pred hcCCCcEEEecCCCCCchHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~ 722 (1492)
...+.++++.||+|+|||.++-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3477899999999999999764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=82.81 E-value=1.7 Score=51.98 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999999764
|
| >2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.64 E-value=1.8 Score=37.53 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=42.1
Q ss_pred cccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHH----HHhccCCcee
Q 043190 492 QFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVK----QYLGYFPSIQ 547 (1492)
Q Consensus 492 Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~----~~~~~~P~~~ 547 (1492)
--| ++++..++.|.+++| |..|+...++.|+.++++ +.+....+. +....+|.--
T Consensus 8 ~~p-~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~ 68 (83)
T 2kz3_A 8 LCP-GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNG 68 (83)
T ss_dssp SST-TCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCC
T ss_pred cCC-CCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcH
Confidence 347 899999999999999 999999999999999988 544444444 3444445433
|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
Probab=82.60 E-value=0.9 Score=39.24 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=43.6
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
.+.|..+||+|+..++.|.+. +.++.++...+.+++..+ +++.....|..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 367889999999999988764 558999999999999887 77777788877654
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=82.54 E-value=5.4 Score=44.51 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=49.7
Q ss_pred CCCccEEEeccccccccC-----C-CcEEEEEeccceecCCCCCcccCc-hhhhhhccCCCC--CCccceEEEEeCCccH
Q 043190 166 EGLLKVLVCTATLAWGVN-----L-PAHTVVIKGTQLYDPKAGGWRDLG-MLDIFGRAGRPQ--FDRSGEGIIITSHDKL 236 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvn-----l-p~~~vVI~~~~~~~~~~~~~~~~~-~~~~~GRAGR~~--~d~~G~~i~~~~~~~~ 236 (1492)
+....+-+.|+...-|+| + ++.+||+ ||+. |.... .+|.+-||-|.| ..+.-.+|.++.....
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~-----~Dsd---wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLIC-----LDTT---VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE-----CSTT---CCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEE-----ECCC---CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 455566566766666787 4 4555665 7754 33332 366444555542 2345678888887777
Q ss_pred HHHHHHhcCCCccccchhHhHHHHHHHHHHhC
Q 043190 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALG 268 (1492)
Q Consensus 237 ~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~ 268 (1492)
++..-.+.. +.++.....+...+++.+++.
T Consensus 240 Eh~~l~~~~--~~~~~~~~~l~k~i~a~v~lr 269 (328)
T 3hgt_A 240 DHCRLFFGK--KFDKNSREYLENVTAAMVILR 269 (328)
T ss_dssp HHHHHHHHH--HTCTTCHHHHHHHHHHHHHGG
T ss_pred HHHHHHccC--CCCcchHHHHHHHHHHHHHHH
Confidence 665432322 233344556777777766653
|
| >2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.50 E-value=1.9 Score=37.46 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=41.9
Q ss_pred ccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCC--ch----HHHHHHHhcCCCc
Q 043190 1324 MFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGN--FP----VSRLHQDLQRFPR 1376 (1492)
Q Consensus 1324 qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~--~~----~~~i~~~~~~~P~ 1376 (1492)
-.|++++..++.|.++||+|..|+...++.++.++.+- .. .+.+...+...|.
T Consensus 8 ~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~ 66 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPV 66 (83)
T ss_dssp SSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCC
T ss_pred cCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcC
Confidence 34899999999999999999999999999999887542 22 2455566666664
|
| >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B | Back alignment and structure |
|---|
Probab=82.40 E-value=1.7 Score=36.66 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=44.5
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
.|+-+| +++......|+++||.|+.||...+.+++..+ ++.+..++|.+.+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 456666 68888889999999999999999999998876 6777778887777654
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=82.31 E-value=2.7 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.5
Q ss_pred CCCcEEE--ecCCCCCchHHHHHH
Q 043190 703 TDNNVLL--GAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli--~apTGsGKT~~~~l~ 724 (1492)
.+..++| .||.|+|||..+...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHH
Confidence 3467888 999999999876543
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.20 E-value=2.2 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+|+.||+|+|||+.+-
T Consensus 242 pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHH
Confidence 45789999999999998753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=82.17 E-value=0.69 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=17.5
Q ss_pred cCCCcEEEecCCCCCchHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~ 721 (1492)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 46789999999999999864
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.11 E-value=11 Score=42.92 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=23.5
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHH
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~ 724 (1492)
+.-+.+.+.. +.. ..++|.||.|+|||......
T Consensus 18 R~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 18 REKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp CHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHH
T ss_pred hHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHH
Confidence 3444555555 544 78999999999999876543
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=80.50 E-value=4 Score=45.55 Aligned_cols=137 Identities=13% Similarity=0.034 Sum_probs=71.5
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++|||+...+...-+-..+. ..++...-+-|.... .+.+
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~----------------------------------~~~~~y~RlDG~~~~-~~~k-- 165 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLL----------------------------------GNKVHIKRYDGHSIK-SAAA-- 165 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHT----------------------------------TSSCEEEESSSCCC--------
T ss_pred hCCCEEEEEECChhHHHHHHHHHh----------------------------------cCCCceEeCCCCchh-hhhh--
Confidence 356799999998776554433331 113445555565332 2211
Q ss_pred HHHhcCCceEEEeccccccccC-----CCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCC--CCCceEEEEEe
Q 043190 995 ELFANNKIQVLVCTSTLAWGVN-----LPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ--YDQHGKAVILV 1067 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvd-----ip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g--~~~~G~~i~l~ 1067 (1492)
-.++...+.+.|+...-|+| +...+.||. ||+.-. |..+.+|.+-|+.|.| ..+.-.+|.++
T Consensus 166 --~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~----~DsdwN-----p~~d~iQa~~r~~R~~~gq~k~v~V~RLv 234 (328)
T 3hgt_A 166 --ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLIC----LDTTVD-----TSQKDIQYLLQYKRERKGLERYAPIVRLV 234 (328)
T ss_dssp ----CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE----CSTTCC-----TTSHHHHHHHCCC---------CCEEEEE
T ss_pred --cccCCceEEEEECCCCCCcCcccccCCCCCEEEE----ECCCCC-----CCChHHHHHHHHhhhccCCCCcceEEEEe
Confidence 12455566666776666786 455666665 554322 3445677777777763 34677889999
Q ss_pred cCCcHHHHHHhhcCCCceeecccccchhhhHHHh
Q 043190 1068 HEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEI 1101 (1492)
Q Consensus 1068 ~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei 1101 (1492)
.....+...-.+.+. .++.....|...+++.+
T Consensus 235 t~~TiEh~~l~~~~~--~~~~~~~~l~k~i~a~v 266 (328)
T 3hgt_A 235 AINSIDHCRLFFGKK--FDKNSREYLENVTAAMV 266 (328)
T ss_dssp ETTSHHHHHHHHHHH--TCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHccCC--CCcchHHHHHHHHHHHH
Confidence 888777655555332 11222334555555433
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=80.39 E-value=2.6 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=23.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.++++.||+|+|||..+. ++...+.. .+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~-~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK-RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT-TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH-cCCeEEEE
Confidence 789999999999999764 34444433 24455554
|
| >3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D | Back alignment and structure |
|---|
Probab=80.26 E-value=2.3 Score=37.03 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=45.2
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCCC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRFP 1375 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~P 1375 (1492)
|+-+| +++.....+|+++||.|+.||...+.+++..+ ++.+-+++|.+.+..+-
T Consensus 13 ~I~~L-~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~G 68 (86)
T 3k4g_A 13 PVDDL-ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRG 68 (86)
T ss_dssp BGGGG-CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTT
T ss_pred cHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcC
Confidence 45566 78888889999999999999999999988876 67777888888887663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1492 | ||||
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 4e-43 | |
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 1e-35 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 9e-33 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 5e-28 | |
| d2q0zx2 | 114 | b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo | 7e-22 | |
| d2q0zx2 | 114 | b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo | 1e-05 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 1e-17 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 3e-17 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 3e-15 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 0.003 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-12 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 9e-11 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 8e-09 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-08 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-06 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 8e-06 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-05 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 8e-04 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 5e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 2e-04 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 4e-04 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 153 bits (387), Expect = 4e-43
Identities = 58/178 (32%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 1200 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHF 1259
T + + I+S A+EY+ +P+RH+EDN L+Q+V ++N + +DPHVK NLL QAH
Sbjct: 1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHL 60
Query: 1260 SRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQD 1319
SR+ L ++ +D + +L ++IR+IQA +D+ +++GWLS ++ M L QMV Q +W +D
Sbjct: 61 SRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMW-SKD 118
Query: 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFP--VSRLHQDLQRFP 1375
S L P ++ + +G+ +V ++++ E ++ ++ + + R+P
Sbjct: 119 SYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 131 bits (331), Expect = 1e-35
Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 6/175 (3%)
Query: 373 EVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNK-HGKISILIQLYISRG 431
+IE++S+++E+ENI +R E N L L Q P ++ N H K ++L+Q ++SR
Sbjct: 5 GLIEIISNAAEYENIPIRHHEDNLLRQLAQK-VPHKLNNPKFNDPHVKTNLLLQAHLSRM 63
Query: 432 WIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLR 491
+ L SD I + R+++A + GW +L +E + V + +W L+
Sbjct: 64 QLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLK 122
Query: 492 QFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPG-GRLVKQYLGYFP 544
Q +E +++ ++G + + EME+++ AL++ T V ++ +P
Sbjct: 123 QLPH-FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 124 bits (312), Expect = 9e-33
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 881 PVPLEVHIQGYPGKFYCP--RMNSMNKPAYAAICTHSPTK--PVLIFVSSRRQTRLTALD 936
PVPL + G ++ + + + + VL+F S+RR TA+
Sbjct: 1 PVPLVEGVL-CEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVK 59
Query: 937 LIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996
L A E+ + + + L + ++ G HHAGL + R +VE+
Sbjct: 60 LSAITAKYVENEGLEKAILEENEGEM----SRKLAECVRKGAAFHHAGLLNGQRRVVEDA 115
Query: 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ 1056
F I+V+V T TLA GVNLPA VI++ +DG +++ QM GRAGRP
Sbjct: 116 FRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPG 172
Query: 1057 YDQHGKAVILVHEPKKSF-YKKFLY-EP 1082
D+ G+A+I+V + + K++++ EP
Sbjct: 173 MDERGEAIIIVGKRDREIAVKRYIFGEP 200
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 110 bits (276), Expect = 5e-28
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 12/207 (5%)
Query: 44 PIPLAQQYIG---ISEPNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQK 100
P+PL + + + + A + + V + + + +VF +R+ KTA K
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKF-EELVEECVAENGGVLVFESTRRGAEKTAVK 59
Query: 101 LVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160
L + +Y + E I ++ ++ L E HHAG+L R +
Sbjct: 60 LSAITAKYVENEGLEK-------AILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 112
Query: 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220
E F G +KV+V T TLA GVNLPA V+++ +D + + + GRAGRP
Sbjct: 113 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 172
Query: 221 FDRSGEGIIITS-HDKLAYYLRLLTSQ 246
D GE III D+ R + +
Sbjct: 173 MDERGEAIIIVGKRDREIAVKRYIFGE 199
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.8 bits (223), Expect = 7e-22
Identities = 22/104 (21%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 1387 DIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFS 1446
I + + +++++ + T A FP+ ++E WW+V+G+ ++ L ++KR++
Sbjct: 13 SIRSGGPVVVLVQLEREE--EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQ 70
Query: 1447 DRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490
+ ++ + T L +SD Y+G +QE+ V+++
Sbjct: 71 QKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 114
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (103), Expect = 1e-05
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 555 ITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQK 614
+ R G I P F K + WW+++ D++S+ + + TL ++ K
Sbjct: 26 LEREEEVTGPVIAPLFPQKRE-----EGWWVVIGDAKSNSLISIKRLTLQQK----AKVK 76
Query: 615 LSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFH 650
L F P Y + +SD+++ + Y S
Sbjct: 77 LDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSVD 110
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 76.8 bits (189), Expect = 1e-17
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 1085 VESSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGL 1142
+ S L + L H + I G E+ + + T+ F++ I+
Sbjct: 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEIS-------------- 47
Query: 1143 SSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYL 1184
LS ++ LE+ G V + PT LG++ S+ Y+
Sbjct: 48 ---LSYELERVVRQLENWGMVVEAAH-LAPTKLGSLVSRLYI 85
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.6 bits (186), Expect = 3e-17
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 27/111 (24%)
Query: 243 LTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDE 302
+TS+L +E+ L+ + + + G ++E + T+ + +++
Sbjct: 2 ITSKLGVET----HLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL--------- 48
Query: 303 VIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYI 353
+ R L+ M+ + T+LG + S YI
Sbjct: 49 -----------SYELERVVRQLENWGMVVEAA---HLAPTKLGSLVSRLYI 85
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.2 bits (181), Expect = 3e-15
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745
P Q + ++ + N+LL PT +GKT+ AE+AM+ Y+ PL+A
Sbjct: 23 IEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSL--YVVPLRA 79
Query: 746 IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNY 805
+ E+ +K ++G + TGDY L DII++T EK D + + ++
Sbjct: 80 LAGEKYESFKK--WEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSL--IRNRASW 135
Query: 806 VKKVGLMILDEIH-LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADW 864
+K V +++DEIH L +RG LE++V++MR ++ +A+R IGLS N ++A+W
Sbjct: 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN----KALRVIGLSATAPNVTEIAEW 191
Query: 865 LGV 867
L
Sbjct: 192 LDA 194
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.4 bits (88), Expect = 0.003
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYR 43
+R++GLSAT PN E+A++L + ++ S +R
Sbjct: 173 LRVIGLSATAPNVTEIAEWLDAD------YYVSDWR 202
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 31/209 (14%), Positives = 73/209 (34%), Gaps = 15/209 (7%)
Query: 660 SHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTI 719
+ E+L+L+ L + + + F P Q +I + + L+ PTG GK++
Sbjct: 2 AQAEVLNLESGAKQVL-----QETFGYQQFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSL 55
Query: 720 SAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779
++ L L V ++PL ++++++++ + V+ + +
Sbjct: 56 CYQIPALLLN-----GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTG 110
Query: 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839
+ I + + N+ L+ +DE H + + +
Sbjct: 111 CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170
Query: 840 SQTERAVRFIGLSTALANA--GDLADWLG 866
F+ L+ + D+ LG
Sbjct: 171 RFPTL--PFMALTATADDTTRQDIVRLLG 197
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 60.8 bits (147), Expect = 9e-11
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ 732
L +NI A+ F IQ ++ + + + N++ A TGSGKT S + ++ L N
Sbjct: 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70
Query: 733 SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTG-DYTPDLMALLSADIIISTPE 791
+ ++ + + P + + + ++ + ++ K G P + AL +A+I++ TP
Sbjct: 71 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPG 130
Query: 792 K-WDGISRNWHSRNYVKKVGLMILDEIH-LLGAERGPILEVIVSRMR 836
+ D I+R + +K V ILDE +L +E I++
Sbjct: 131 RILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 55.2 bits (131), Expect = 8e-09
Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 15/196 (7%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
Q I+ + N L+ PTG GKT+ A + + + KV+ +AP K +V +
Sbjct: 12 IYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQH 68
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
++ + +++V +TG+ +P+ + A + + R ++ V
Sbjct: 69 AESFRRLF-NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVS 127
Query: 811 LMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS----TALANAGDLADWLG 866
L++ DE H + + + + IGL+ + ++ + LG
Sbjct: 128 LIVFDEAHRAVGNYAYVF------IAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181
Query: 867 VGEIGLFN-FKPSVRP 881
+ I + P VRP
Sbjct: 182 IEHIEYRSENSPDVRP 197
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 54.9 bits (131), Expect = 3e-08
Identities = 45/372 (12%), Positives = 82/372 (22%), Gaps = 94/372 (25%)
Query: 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764
++ G+GKT A++ + ++ + +AP R + ++ L +
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIVRE-AIKRGLRTLILAPT----RVVAAEMEEALRGLPIR 64
Query: 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAER 824
+ + + + L+I+DE H
Sbjct: 65 YQTPAIRAEHTG-----REIVDLMCHATFTMRLLSPIRVP---NYNLIIMDEAHFTDPAS 116
Query: 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPL 884
YIS++ E TA
Sbjct: 117 IAA-------RGYISTRVEMGEAAGIFMTATPP-----------------------GSRD 146
Query: 885 EVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASD 944
P + + + T + FV S + A L +
Sbjct: 147 PFPQSNAPIMDEEREIPERSWNSGHEWVTDFK-GKTVWFVPSIKAGNDIAACLRK----- 200
Query: 945 ETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQV 1004
+ D + N
Sbjct: 201 -----------------------------NGKKVIQLSRKTFDSEY----IKTRTNDWDF 227
Query: 1005 LVCTSTLAWGVNLPAHLVIIKGTE-----YYDGKTK--RYVDFPIT--DILQMMGRAGRP 1055
+V T G N A VI DG+ + P+T Q GR GR
Sbjct: 228 VVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGR- 286
Query: 1056 QYDQHGKAVILV 1067
+ + +
Sbjct: 287 --NPKNENDQYI 296
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 46.6 bits (109), Expect = 2e-06
Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 19/148 (12%)
Query: 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764
+L G+GKT +L + +V ++S++ +
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL-------------APTRVVLSEMKE 54
Query: 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAER 824
+ + + + + ++ V ++I+DE H L
Sbjct: 55 AFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPAS 114
Query: 825 GPILEVIVSRMRYISSQTERAVRFIGLS 852
R R I ++
Sbjct: 115 IAARGWAAHRARA------NESATILMT 136
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 44.8 bits (105), Expect = 8e-06
Identities = 24/151 (15%), Positives = 39/151 (25%), Gaps = 23/151 (15%)
Query: 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761
+ L APTGSGK+ A KV+ + P A + +
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAAYA-----AQGYKVLVLNPSVAATLG----FGAYMSKA 56
Query: 762 LGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821
G + TG T S ++I DE H
Sbjct: 57 HGVDPNIRTGVRTITTG---------SPITYSTYGKFLADGGCSGGAYDIIICDECHSTD 107
Query: 822 AERGPILEVIVSRMRYISSQTERAVRFIGLS 852
A + ++ + A + +
Sbjct: 108 ATSILGIGTVLDQAET-----AGARLVVLAT 133
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP-AHLVIIKGTEYYDGKTKRYVD 1039
+ GL+ +++ L+ + FA + VLV TS G+++P LV+ Y+
Sbjct: 199 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF-----YE------PV 247
Query: 1040 FPITDILQMMGRAGRPQYDQHGKAVILVHE 1069
+Q GR GR G+ +IL+ +
Sbjct: 248 PSAIRSIQRRGRTGR---HMPGRVIILMAK 274
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 41.0 bits (95), Expect = 8e-04
Identities = 36/188 (19%), Positives = 74/188 (39%), Gaps = 15/188 (7%)
Query: 56 EPNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFN 115
+ A E+ S+ KK + L Q + + H + D +K + + + +R ++ ++
Sbjct: 110 AGSTKASKEIFSDKRMKKAISLLVQ-AKEIGLDHPKMDKLK--EIIREQLQRKQNSKIIV 166
Query: 116 NDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCT 175
+ + + + + G A + G+ + ++ L F+ G VLV T
Sbjct: 167 FTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT 226
Query: 176 ATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235
+ G+++P +V+ Y+P + + GR GR G II+ +
Sbjct: 227 SVGEEGLDVPEVDLVV----FYEPV---PSAIRSIQRRGRTGR---HMPGRVIILMAKGT 276
Query: 236 L--AYYLR 241
AYY
Sbjct: 277 RDEAYYWS 284
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.1 bits (103), Expect = 5e-05
Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 24/176 (13%)
Query: 691 PIQTQ-IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749
IQ IL + APTG GKT L L + I P +V +
Sbjct: 46 AIQKMWAKRIL--RKESFAATAPTGVGKTSFGLAMSLFLALKGK--RCYVIFPTSLLVIQ 101
Query: 750 RMNDWKDRL--------VSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWH 801
+ + + L + I+I+T +
Sbjct: 102 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFL------SK 155
Query: 802 SRNYVKKVGLMILDEIHLL-----GAERGPILEVIVSRMRYISSQTERAVRFIGLS 852
+ + +D++ + ++ L ++ S E + +
Sbjct: 156 HYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVST 211
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 711 APTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMT 770
PT +G+++ L + + K++ I P A+ + +D+ D + + ++
Sbjct: 135 LPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIG 192
Query: 771 GDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830
G + D A +++ T + + + + G+M+ DE HL +
Sbjct: 193 GGASKDDKYKNDAPVVVGTWQTV-----VKQPKEWFSQFGMMMNDECHLATG---KSISS 244
Query: 831 IVSRMRYISSQTERAVRFIGLS 852
I+S + + GLS
Sbjct: 245 IISGLN-------NCMFKFGLS 259
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.0 bits (95), Expect = 4e-04
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 21/140 (15%)
Query: 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763
D + PTGSGKT A A+ L + WK+RL
Sbjct: 85 DKRGCIVLPTGSGKTHVAMAAINELS---------TPTLIVVPTLALAEQWKERLGIFGE 135
Query: 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823
+ + E +G S ++ + L+I DE+H L AE
Sbjct: 136 EYVGEFSGRIKELKPLT-----------VSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 184
Query: 824 -RGPILEVIVSRMRYISSQT 842
I ++ ++ R + T
Sbjct: 185 SYVQIAQMSIAPFRLGLTAT 204
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1492 | |||
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.97 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.96 | |
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.95 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.91 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.91 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.91 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.9 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.9 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.88 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.83 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.83 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.81 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.8 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.8 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.79 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.78 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.77 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.77 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.77 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.77 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.76 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.75 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.75 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.75 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.75 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.74 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.74 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.74 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.73 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.71 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.71 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.63 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.61 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.61 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.6 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.59 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.59 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.59 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.57 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.55 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.48 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.46 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.44 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.44 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.44 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.42 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.39 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.38 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.37 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.34 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.33 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.33 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.31 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.28 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.27 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.22 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.09 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.98 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.75 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.69 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.46 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.45 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.38 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.35 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.25 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.07 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 98.06 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.96 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.94 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.71 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.56 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.92 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.87 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.78 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.58 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.52 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.42 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.37 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.19 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.17 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 95.99 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.97 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.96 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.76 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 95.69 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 95.49 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.44 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.33 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 94.83 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 94.75 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 94.67 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 94.47 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 94.28 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.78 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 93.77 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 93.45 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.33 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.23 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 92.17 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 92.13 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.97 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.84 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.83 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.67 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.21 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.99 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 90.8 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 90.58 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 90.49 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 90.07 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.73 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.22 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.66 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 86.89 | |
| d1jx4a2 | 240 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 86.31 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 86.2 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 85.79 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.38 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.31 | |
| d1zeta2 | 273 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 84.15 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 83.69 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.4 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 83.19 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.16 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 83.14 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.39 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 81.53 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.3 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.7 | |
| d2axtu1 | 98 | Photosystem II 12 kDa extrinsic protein PsbU {Ther | 80.59 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.7e-31 Score=273.32 Aligned_cols=173 Identities=33% Similarity=0.665 Sum_probs=165.5
Q ss_pred CHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhH
Q 043190 1201 SLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQS 1280 (1492)
Q Consensus 1201 ~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~ 1280 (1492)
.++++|++||.|.||.++++|++|++++++|.+.+|++.+...+++|+.|+++||||||+|+++| .+|..|+.+|++++
T Consensus 2 ~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~-~sl~~D~~~I~~~~ 80 (176)
T d2q0zx1 2 KVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKA 80 (176)
T ss_dssp CHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCcHhhccCCCCccHHHHHHHHHHhCCCCCcccccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999887788999999999999999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC
Q 043190 1281 IRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG 1360 (1492)
Q Consensus 1281 ~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~ 1360 (1492)
+||++||+|++..+||++++.++++|+|||+||+|++ .+||+||||++++.++++.++|++|+++|.+++++++..+++
T Consensus 81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~-~~~L~Qlp~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll~ 159 (176)
T d2q0zx1 81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK-DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQ 159 (176)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTT-SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CCCccCCCcCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHc
Confidence 9999999999999999999999999999999999998 889999999999999999999999999999999999998865
Q ss_pred --CchHHHHHHHhcCCC
Q 043190 1361 --NFPVSRLHQDLQRFP 1375 (1492)
Q Consensus 1361 --~~~~~~i~~~~~~~P 1375 (1492)
+.++++|.++++.||
T Consensus 160 ~~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 160 LTDSQIADVARFCNRYP 176 (176)
T ss_dssp CCHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHhCc
Confidence 567999999999999
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=5.4e-31 Score=279.15 Aligned_cols=165 Identities=31% Similarity=0.437 Sum_probs=134.6
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+.+++++|+||||+||++|+.+|..|.+......... .....+........++.|.+++.+|||+|||||
T Consensus 32 l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l 104 (201)
T d2p6ra4 32 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENE-------GLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 104 (201)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCS-------SHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred HHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchh-------HHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHh
Confidence 4455667899999999999999999999988765422111 101111111112235779999999999999999
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
++++|..+|++|++|.++|||||+||++|||+|+++|||.+++.||+...+++..+|+||+|||||+|.|..|.+++++.
T Consensus 105 ~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~ 184 (201)
T d2p6ra4 105 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 184 (201)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred hhhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeC
Confidence 99999999999999999999999999999999999999999999997666677788999999999999999999999998
Q ss_pred CccHHH-HHHHhc
Q 043190 233 HDKLAY-YLRLLT 244 (1492)
Q Consensus 233 ~~~~~~-~~~~~~ 244 (1492)
+.+.+. +++++.
T Consensus 185 ~~~~~~~~k~~~~ 197 (201)
T d2p6ra4 185 KRDREIAVKRYIF 197 (201)
T ss_dssp GGGHHHHHHTTTS
T ss_pred CCChHHHHHHHhc
Confidence 887765 555544
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.4e-29 Score=261.55 Aligned_cols=172 Identities=25% Similarity=0.434 Sum_probs=164.5
Q ss_pred CHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccccCC-CCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHh
Q 043190 370 NDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGG-PSNKHGKISILIQLYISRGWIDTFSLVSDAAYISAS 448 (1492)
Q Consensus 370 ~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~-~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~ 448 (1492)
..+.+|++||.|.||.++++|++|+++++++++. +|++.++. .+.++.|+++|||||++|.+++ .+|.+|+.+|+++
T Consensus 2 ~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~-~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~-~sl~~D~~~I~~~ 79 (176)
T d2q0zx1 2 KVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK-VPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSK 79 (176)
T ss_dssp CHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHH-SSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCcHhhccCCCCccHHHHHHHHHHh-CCCCCcccccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998 88888764 6889999999999999999986 5899999999999
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHh
Q 043190 449 LARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALI 527 (1492)
Q Consensus 449 ~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~ 527 (1492)
++||++||+|||..+||+.++.++++|+|||+|++|++.+||+||| +++++.++++.++|+ |+++|.+++++|++.++
T Consensus 80 ~~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp-~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll 158 (176)
T d2q0zx1 80 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLP-HFTSEHIKRCTDKGVESVFDIMEMEDEERNALL 158 (176)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGST-TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCCCccCCC-cCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999 99999999999999999
Q ss_pred c-CCchHHHHHHHhccCC
Q 043190 528 R-YTPGGRLVKQYLGYFP 544 (1492)
Q Consensus 528 ~-~~~~~~~i~~~~~~~P 544 (1492)
+ +++++++|.++++.||
T Consensus 159 ~~~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 159 QLTDSQIADVARFCNRYP 176 (176)
T ss_dssp CCCHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHHHHHhCc
Confidence 9 9999999999999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.95 E-value=4.6e-28 Score=280.17 Aligned_cols=285 Identities=14% Similarity=0.082 Sum_probs=184.3
Q ss_pred hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 700 LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 700 ~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
++..++++++.||||||||++|+.+++..... ++.+++|++|+++||.|++++++. . +..+..... ....
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi~Ptr~La~q~~~~l~~----~-~~~~~~~~~----~~~~ 74 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLILAPTRVVAAEMEEALRG----L-PIRYQTPAI----RAEH 74 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEEESSHHHHHHHHHHTTT----S-CCBCCC-----------
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEEccHHHHHHHHHHHHhc----C-CcceeeeEE----eecc
Confidence 44578999999999999999998888875543 368999999999999998877643 2 222111111 1112
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChH
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAG 859 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~ 859 (1492)
.....|+++||+.+...... ...+.+++++|+||+|++... +.....++..+. . ..+.+++++|||++...
T Consensus 75 ~~~~~i~~~t~~~l~~~~~~---~~~~~~~~~vViDE~H~~~~~-~~~~~~~l~~~~---~--~~~~~~v~~SAT~~~~~ 145 (305)
T d2bmfa2 75 TGREIVDLMCHATFTMRLLS---PIRVPNYNLIIMDEAHFTDPA-SIAARGYISTRV---E--MGEAAGIFMTATPPGSR 145 (305)
T ss_dssp -CCCSEEEEEHHHHHHHHTS---SSCCCCCSEEEEESTTCCSHH-HHHHHHHHHHHH---H--HTSCEEEEECSSCTTCC
T ss_pred cCccccccCCcHHHHHHHhc---CccccceeEEEeeeeeecchh-hHHHHHHHHHhh---c--cccceEEEeecCCCcce
Confidence 24578999999987655443 345788999999999988532 222222222222 1 24789999999987521
Q ss_pred HHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHH
Q 043190 860 DLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQ 939 (1492)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~ 939 (1492)
. .......+........+.... ......+ ...++++||||+++++++.++..|.+
T Consensus 146 ~---------------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~L~~ 200 (305)
T d2bmfa2 146 D---------------PFPQSNAPIMDEEREIPERSW--------NSGHEWV--TDFKGKTVWFVPSIKAGNDIAACLRK 200 (305)
T ss_dssp C---------------SSCCCSSCEEEEECCCCCSCC--------SSCCHHH--HSSCSCEEEECSCHHHHHHHHHHHHH
T ss_pred e---------------eecccCCcceEEEEeccHHHH--------HHHHHHH--HhhCCCEEEEeccHHHHHHHHHHHHh
Confidence 1 001111122221111111110 0111111 23467899999999999999988854
Q ss_pred HHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCC
Q 043190 940 FAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA 1019 (1492)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~ 1019 (1492)
. +..+..+||++....+ ..|++|..+++|||+++++|+|++.
T Consensus 201 ~----------------------------------~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~~ 242 (305)
T d2bmfa2 201 N----------------------------------GKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFKA 242 (305)
T ss_dssp H----------------------------------TCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCCC
T ss_pred C----------------------------------CCCEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCCc
Confidence 3 4567889999866544 4678999999999999999999987
Q ss_pred cEEEEecc-----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 1020 HLVIIKGT-----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 1020 ~~~VI~~~-----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
..+|..+. ..|+++.+ ...+.|.++|+||+|||||.| ..|...+++.
T Consensus 243 ~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~--~~~~~~~~~~ 298 (305)
T d2bmfa2 243 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP--KNENDQYIYM 298 (305)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS--SCCCEEEEEC
T ss_pred cEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCC--CCceEEEEEC
Confidence 66554332 23454432 113568999999999999988 4555555543
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.6e-25 Score=235.63 Aligned_cols=180 Identities=14% Similarity=0.223 Sum_probs=144.3
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|+.+..+++. ||..|+|+|+++++.++ .|+|++++||||||||++|++|+++.+... ...++++++|||+||.|++
T Consensus 24 L~~~l~~~L~~~g~~~pt~IQ~~aIp~il-~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~ 102 (222)
T d2j0sa1 24 LREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQ 102 (222)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHH
Confidence 4555555555 99999999999999999 799999999999999999999999988654 4578999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+.+ ++...++++..+.|+...... ...+++|+|+||+++..++++. ...+++++++|+||||.+.+ +++..
T Consensus 103 ~~~~~-l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~--~~~~~~l~~lVlDEaD~ll~~~f~~~ 179 (222)
T d2j0sa1 103 KGLLA-LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEMLNKGFKEQ 179 (222)
T ss_dssp HHHHH-HTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHH-HhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhccccc--ccccccceeeeecchhHhhhcCcHHH
Confidence 98876 666668899999988764432 2247899999999998888763 34588999999999997754 56655
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++.++.. .+...|++++|||+++ .+++++.+
T Consensus 180 i~~I~~~-------l~~~~Q~ilfSAT~~~~v~~l~~~~ 211 (222)
T d2j0sa1 180 IYDVYRY-------LPPATQVVLISATLPHEILEMTNKF 211 (222)
T ss_dssp HHHHHTT-------SCTTCEEEEEESCCCHHHHTTGGGT
T ss_pred HHHHHHh-------CCCCCEEEEEEEeCCHHHHHHHHHH
Confidence 5555543 4568899999999976 34444443
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.5e-24 Score=229.85 Aligned_cols=181 Identities=16% Similarity=0.225 Sum_probs=143.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|+.+..+++. ||+.|+|+|+++++.++ +|+|++++||||||||++|++|++..+... ++.++++++|+++||.|++
T Consensus 10 L~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~ 88 (206)
T d1veca_ 10 LKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHH
Confidence 4556666655 99999999999999999 789999999999999999999999987643 4678999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~ 827 (1492)
+.+........+..+....|+...... ....++|+|+||+++..+++.. ...+++++++|+||||.+. .+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~--~~~~~~l~~lVlDEaD~ll~~~f~~~ 166 (206)
T d1veca_ 89 QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--VAKVDHVQMIVLDEADKLLSQDFVQI 166 (206)
T ss_dssp HHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccch--hccccccceEEEeccccccccchHHH
Confidence 988775544446677777776654332 2357899999999998888763 3458899999999999765 467766
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++.++..+ +.+.|++++|||+++ ..++++.+
T Consensus 167 i~~I~~~~-------~~~~Q~~l~SAT~~~~v~~l~~~~ 198 (206)
T d1veca_ 167 MEDIILTL-------PKNRQILLYSATFPLSVQKFMNSH 198 (206)
T ss_dssp HHHHHHHS-------CTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHhC-------CCCCEEEEEEecCCHHHHHHHHHH
Confidence 66666543 467899999999976 35555544
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=4.2e-24 Score=225.76 Aligned_cols=158 Identities=34% Similarity=0.533 Sum_probs=130.5
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++||||+||+.|+.+|..|.+..........+ ...+........++.|.+++..||++|||+|++++|..+++
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~ 114 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGL----EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVED 114 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSH----HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHH----HHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHH
Confidence 46899999999999999999998876543221110 11111111222356788999999999999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH-H
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS-F 1074 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~-~ 1074 (1492)
.|++|.++|||||+++++|||+|+.++||.++++||+.. .+++..+|+||+|||||.|.|..|.+++++.+.+.+ .
T Consensus 115 ~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~---~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~~~ 191 (201)
T d2p6ra4 115 AFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 191 (201)
T ss_dssp HHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE---EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHH
T ss_pred HHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCc---CCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChHHH
Confidence 999999999999999999999999999999999998755 467899999999999999999999999999888776 4
Q ss_pred HHHhhc
Q 043190 1075 YKKFLY 1080 (1492)
Q Consensus 1075 ~~~~l~ 1080 (1492)
+++++.
T Consensus 192 ~k~~~~ 197 (201)
T d2p6ra4 192 VKRYIF 197 (201)
T ss_dssp HHTTTS
T ss_pred HHHHhc
Confidence 777775
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.7e-24 Score=227.23 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=140.2
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|+.+..+++. ||++|+|+|.++++.++ +|+|++++||||||||++|++|+++.+... .+.++++++|+|+||.|+.
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~ 86 (207)
T d1t6na_ 8 LKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 86 (207)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHH
Confidence 4445556555 99999999999999999 789999999999999999999999987653 3578999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~ 827 (1492)
+.+..........++....|+....... ...++|+|+||+++..++++. ...+++++++|+||||.+.+..|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~--~~~l~~l~~lVlDEaD~ll~~~~-- 162 (207)
T d1t6na_ 87 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQLD-- 162 (207)
T ss_dssp HHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEESHHHHHSSHH--
T ss_pred HHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCC--ceeccccceeehhhhhhhhhcCC--
Confidence 9887744333345677888877644221 246899999999999888863 34589999999999997654311
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
+...+ ..+....+.+.|++++|||+++ .+++++.+
T Consensus 163 ~~~~i---~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~ 198 (207)
T d1t6na_ 163 MRRDV---QEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 198 (207)
T ss_dssp HHHHH---HHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred cHHHH---HHHHHhCCCCCEEEEEeeeCCHHHHHHHHHH
Confidence 22222 2223345678899999999976 46666654
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=3.6e-24 Score=229.44 Aligned_cols=181 Identities=22% Similarity=0.307 Sum_probs=144.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
|++++.+++. ||.+|+|+|.++++.+++++.|++++||||||||++|.+|+++.....++.+++|++|+++||.|+++
T Consensus 11 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~ 90 (208)
T d1hv8a1 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVAD 90 (208)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeeccccchhhhh
Confidence 4445555554 99999999999999998555799999999999999999999998888788999999999999999999
Q ss_pred HHHHHhhhccCCEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc-CCCCccHHH
Q 043190 753 DWKDRLVSQLGKEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL-GAERGPILE 829 (1492)
Q Consensus 753 ~~~~~~~~~~g~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l-~~~~g~~~~ 829 (1492)
.+.. +....+.++....|+..... +...+++|+|+||+++..++++. ...+++++++|+||||.+ +.+++..+.
T Consensus 91 ~~~~-~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~--~~~~~~l~~lViDEad~l~~~~~~~~i~ 167 (208)
T d1hv8a1 91 EIES-LKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLNMGFIKDVE 167 (208)
T ss_dssp HHHH-HHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHTTTTHHHHH
T ss_pred hhhh-hcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcC--CCCcccCcEEEEEChHHhhcCCChHHHH
Confidence 8887 44444888999999875432 33457999999999998888763 335899999999999965 445655555
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
.++. ..+++.|++++|||+++ ..++++.+
T Consensus 168 ~I~~-------~~~~~~Q~i~~SAT~~~~v~~~~~~~ 197 (208)
T d1hv8a1 168 KILN-------ACNKDKRILLFSATMPREILNLAKKY 197 (208)
T ss_dssp HHHH-------TSCSSCEEEEECSSCCHHHHHHHHHH
T ss_pred HHHH-------hCCCCCeEEEEEccCCHHHHHHHHHH
Confidence 5543 34567899999999986 34555443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=1.9e-24 Score=231.83 Aligned_cols=174 Identities=35% Similarity=0.587 Sum_probs=145.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||.+|+|+|.++++.++ +++|+++++|||||||+++.++++..+.. +++++|++|+++|+.|+++++++.+ .. ..
T Consensus 22 g~~~l~~~Q~~ai~~l~-~~~~~il~apTGsGKT~~a~l~i~~~~~~--~~~vl~l~P~~~L~~q~~~~~~~~~-~~-~~ 96 (202)
T d2p6ra3 22 GIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKKWE-KI-GL 96 (202)
T ss_dssp ---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTTTT-TT-TC
T ss_pred CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCchhHHHHHHHHHHhhc--cCcceeecccHHHHHHHHHHHHHHh-hc-cc
Confidence 88899999999999998 68899999999999999999999987765 6799999999999999999887633 33 45
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++...+|+..........++|+++||..+..++++.. ..+.++++||+||+|.+.+ .++..++.++.+++.. +
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~----~ 170 (202)
T d2p6ra3 97 RIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM----N 170 (202)
T ss_dssp CEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH----C
T ss_pred cceeeccCcccccccccccceeeeccHHHHHHHhccc--hhhhhhhhccccHHHHhcccccchHHHHHHHHHHhc----C
Confidence 7777888877666666788999999999988887643 4578999999999998864 6788888888888764 4
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCc
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGE 869 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~ 869 (1492)
++.|+|+||||++|++++++|++.+.
T Consensus 171 ~~~~~l~lSATl~n~~~~~~~l~~~~ 196 (202)
T d2p6ra3 171 KALRVIGLSATAPNVTEIAEWLDADY 196 (202)
T ss_dssp TTCEEEEEECCCTTHHHHHHHTTCEE
T ss_pred CCCcEEEEcCCCCcHHHHHHHcCCCe
Confidence 57899999999999999999997654
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9e-24 Score=195.16 Aligned_cols=110 Identities=22% Similarity=0.534 Sum_probs=96.2
Q ss_pred ceEEEEEEEeccC-CCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCcceEEEE
Q 043190 1376 RIQVKLRLQRRDI-DGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTHME 1454 (1492)
Q Consensus 1376 ~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~~~~~~~ 1454 (1492)
+|+|++++.+++. ..|+.++|+|+|+|.+. ..+.+|||+||+.|.|+||++|||.++++|+++||+++.....++++
T Consensus 1 ni~~~~~v~d~~~v~~g~~~~l~V~l~R~~~--~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~~~~~l~ 78 (114)
T d2q0zx2 1 NIELSYEVVDKDSIRSGGPVVVLVQLEREEE--VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLD 78 (114)
T ss_dssp CEEEEEEETTGGGCBTTSEEEEEEEEEECSS--CCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEE
T ss_pred CceEEEEEcCCcceecCCeEEEEEEEEEcCC--cCCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEeccccceEEEEE
Confidence 4677888765544 68899999999999863 45689999999999999999999999999999999999887765555
Q ss_pred --ecCCCCCcceEEEEEEeCCCCCccEEEEEEEEEec
Q 043190 1455 --LPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQ 1489 (1492)
Q Consensus 1455 --~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~~v~~ 1489 (1492)
+|. +|.++|++|+|||||+|+|++++|+++|.+
T Consensus 79 f~~p~--~G~~~~~l~~~sDsY~G~D~~~~~~~~V~e 113 (114)
T d2q0zx2 79 FVAPA--TGAHNYTLYFMSDAYMGCDQEYKFSVDVKE 113 (114)
T ss_dssp EECCS--SEEEEEEEEEEESSCSSCCEEEEEEEEEBC
T ss_pred EeCCC--CCeEEEEEEEEcccccccceEEEEEEEeec
Confidence 564 599999999999999999999999999986
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.9e-24 Score=226.56 Aligned_cols=180 Identities=15% Similarity=0.224 Sum_probs=139.8
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|+....+++. ||++|+|+|+++++.++ .|+|++++||||||||++|++|+++.+... .+.++++++||++||.|++
T Consensus 19 L~~~l~~~L~~~g~~~pt~iQ~~aip~il-~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~ 97 (218)
T d2g9na1 19 LSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ 97 (218)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHH
Confidence 4445555554 99999999999999998 789999999999999999999999987643 4678999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch----hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL----MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~----~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.... ...+..+..+.|+..... .....++|+|+||+++..++++. ...+++++++|+||||.+.+ +++.
T Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~--~~~~~~l~~lVlDEaD~ll~~~f~~ 174 (218)
T d2g9na1 98 KVVMALG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR--YLSPKYIKMFVLDEADEMLSRGFKD 174 (218)
T ss_dssp HHHHHHH-TTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTT--SSCSTTCCEEEEESHHHHHHTTCHH
T ss_pred HHHhhhc-cccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcC--CcccccceEEEeeecchhhcCchHH
Confidence 9988744 444777777766543322 12246799999999998888763 34588999999999997753 5666
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
.++.++..+ +.+.|++++|||+++ ..++++.+
T Consensus 175 ~~~~Il~~~-------~~~~Q~il~SAT~~~~v~~~~~~~ 207 (218)
T d2g9na1 175 QIYDIFQKL-------NSNTQVVLLSATMPSDVLEVTKKF 207 (218)
T ss_dssp HHHHHHHHS-------CTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-------CCCCeEEEEEecCCHHHHHHHHHH
Confidence 666655433 467899999999976 35555544
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.3e-23 Score=222.84 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=142.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|+++..+++. ||++|+|+|.++++.++ .|+|++++||||||||++|++|+++.+... .+.++++++|+++|+.|..
T Consensus 17 l~~~l~~~L~~~g~~~pt~iQ~~aip~il-~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~ 95 (212)
T d1qdea_ 17 LDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 95 (212)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhh
Confidence 4555666654 99999999999999998 789999999999999999999999988653 4679999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCc--chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTP--DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~--~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
..+.. +....+..+....|+... +.....+++|+|+||+++..+.+.. ...+++++++|+||||.+.+ +++..+
T Consensus 96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~--~~~l~~l~~lVlDEad~lld~~f~~~v 172 (212)
T d1qdea_ 96 KVVMA-LAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLSSGFKEQI 172 (212)
T ss_dssp HHHHH-HTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred hhhcc-cccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccC--ceecCcceEEeehhhhhhcccchHHHH
Confidence 98876 444446677777665433 3334557899999999998888874 34589999999999997753 566666
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVG 868 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~ 868 (1492)
+.++.++ ++..|++++|||+++ .+.+++++..+
T Consensus 173 ~~I~~~~-------~~~~Q~vl~SAT~~~~v~~l~~~~l~~ 206 (212)
T d1qdea_ 173 YQIFTLL-------PPTTQVVLLSATMPNDVLEVTTKFMRN 206 (212)
T ss_dssp HHHHHHS-------CTTCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred HHHHHhC-------CCCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 6665543 457899999999986 47777766443
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.88 E-value=6.9e-23 Score=223.43 Aligned_cols=180 Identities=14% Similarity=0.207 Sum_probs=141.1
Q ss_pred hhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----------CCceEEEEcccHH
Q 043190 678 NIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----------SDMKVVYIAPLKA 745 (1492)
Q Consensus 678 ~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----------~~~~~l~i~P~r~ 745 (1492)
+..+++. ||..|+|+|.++++.++ .|+|++++||||||||++|++|+++.+... .+.++++++|+++
T Consensus 31 ~l~~~L~~~g~~~pt~iQ~~~ip~il-~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~e 109 (238)
T d1wrba1 31 TIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRE 109 (238)
T ss_dssp STTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHhhhhh-CCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchh
Confidence 3444443 99999999999999999 789999999999999999999999987432 3568999999999
Q ss_pred HHHHHHHHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-
Q 043190 746 IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG- 821 (1492)
Q Consensus 746 La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~- 821 (1492)
||.|+++.+.. +....++++..+.|+..... ....+++|+|+||+++..+++.. ...+.+++++|+||||.+.
T Consensus 110 l~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~--~~~l~~v~~lViDEaD~ll~ 186 (238)
T d1wrba1 110 LAIQILSESQK-FSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLD 186 (238)
T ss_dssp HHHHHHHHHHH-HHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHH
T ss_pred hhcchheeeee-cccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccC--ceeccccceeeeehhhhhhh
Confidence 99999988876 55555889999988766432 23457899999999998888764 3458899999999999664
Q ss_pred CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHH
Q 043190 822 AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADW 864 (1492)
Q Consensus 822 ~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~ 864 (1492)
..++..++.++.+++ .....+.|++++|||+++ .+.+++-
T Consensus 187 ~~f~~~i~~Il~~~~---~~~~~~~Q~il~SAT~~~~v~~l~~~ 227 (238)
T d1wrba1 187 MGFEPQIRKIIEESN---MPSGINRQTLMFSATFPKEIQKLAAD 227 (238)
T ss_dssp TTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCCHHHHHHHHH
T ss_pred hccHHHHHHHHHHhc---CCCCCCCEEEEEeeeCCHHHHHHHHH
Confidence 456667766665432 122346799999999976 4555543
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=4.9e-22 Score=212.71 Aligned_cols=180 Identities=17% Similarity=0.232 Sum_probs=143.4
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|++...+++. ||.+|+|+|+++++.++ .|+|+++.||||||||++|++|+++.+... ++.++++++|+++++.+..
T Consensus 8 L~~~l~~~L~~~g~~~pt~iQ~~aip~il-~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (206)
T d1s2ma1 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 86 (206)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhh
Confidence 3445555554 99999999999999998 789999999999999999999999987543 4578999999999999988
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
..+.. +....++++...+|+...... ...+++|+|+||+++..+++. ....+++++++|+||||.+.+ +++..
T Consensus 87 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~lV~DEaD~l~~~~f~~~ 163 (206)
T d1s2ma1 87 QVVRT-LGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRDFKTI 163 (206)
T ss_dssp HHHHH-HTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHHHHHH
T ss_pred hhhhh-cccccCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc--ceeecccceEEEeechhhhhhhhhHHH
Confidence 87766 555569999999998765432 235789999999999998886 344689999999999998754 45555
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++.++.+ .++..|++++|||++. ..++++++
T Consensus 164 v~~I~~~-------l~~~~Q~il~SATl~~~v~~~~~~~ 195 (206)
T d1s2ma1 164 IEQILSF-------LPPTHQSLLFSATFPLTVKEFMVKH 195 (206)
T ss_dssp HHHHHTT-------SCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHh-------CCCCCEEEEEEEeCCHHHHHHHHHH
Confidence 5555543 4567899999999975 45565554
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.83 E-value=9.7e-21 Score=203.88 Aligned_cols=181 Identities=16% Similarity=0.178 Sum_probs=136.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|+++..+++. ||++|+|+|++|++.++ .|+|++++||||||||++|++|+++.+... .....++++|++.++.+.+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (209)
T d1q0ua_ 8 FQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIY 86 (209)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHH
Confidence 3344444443 99999999999999998 789999999999999999999999987653 3568899999999999988
Q ss_pred HHHHHHhhhc---cCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 752 NDWKDRLVSQ---LGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 752 ~~~~~~~~~~---~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
.......... ....+....|+..... ....+++|+|+||+++..+.++. ...+++++++|+||||.+.+ ++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~--~~~~~~l~~lViDEad~ll~~~f 164 (209)
T d1q0ua_ 87 HETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--ALDVHTAHILVVDEADLMLDMGF 164 (209)
T ss_dssp HHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--CCCGGGCCEEEECSHHHHHHTTC
T ss_pred HHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhh--ccccccceEEEEeeccccccccc
Confidence 8776543322 2344555555543322 12346899999999998888764 34578999999999997754 56
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
+..++.++.. .+++.|++++|||+++ ..++++.+
T Consensus 165 ~~~v~~I~~~-------~~~~~Q~il~SATl~~~v~~l~~~~ 199 (209)
T d1q0ua_ 165 ITDVDQIAAR-------MPKDLQMLVFSATIPEKLKPFLKKY 199 (209)
T ss_dssp HHHHHHHHHT-------SCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred HHHHHHHHHH-------CCCCCEEEEEEccCCHHHHHHHHHH
Confidence 6666666543 3568899999999975 45666544
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=5.4e-21 Score=205.51 Aligned_cols=178 Identities=17% Similarity=0.282 Sum_probs=130.0
Q ss_pred CchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH
Q 043190 676 GNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 676 ~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
..+.++..|||+.|+|+|.+++++++ .|+|+++++|||||||++|.+|++.. ..++++++|+++|+.|..+.++
T Consensus 13 ~~~~l~~~fg~~~~rp~Q~~ai~~~l-~g~~vlv~apTGsGKT~~~~~~~~~~-----~~~~~~v~P~~~L~~q~~~~l~ 86 (206)
T d1oywa2 13 AKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQ 86 (206)
T ss_dssp HHHHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCCCcchhhhhhhhc-----cCceEEeccchhhhhhHHHHHH
Confidence 34667888999999999999999998 68899999999999999999998864 6899999999999999999886
Q ss_pred HHhhhccCCEEEEEcCCCCcc-------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-CccH
Q 043190 756 DRLVSQLGKEMVEMTGDYTPD-------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPI 827 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~~~-------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~~ 827 (1492)
.. +.......+..... .......+|+++||+.+...... ......+++++|+||+|++.+. .+..
T Consensus 87 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~--~~~~~~~v~~lviDEaH~~~~~~~~~~ 159 (206)
T d1oywa2 87 AN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL--EHLAHWNPVLLAVDEAHCISQWGHDFR 159 (206)
T ss_dssp HT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH--HHHTTSCEEEEEESSGGGGCTTSSCCC
T ss_pred hh-----cccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhc--ccchhheeeeeeeeeeeeeeccccchH
Confidence 63 33344443332221 11234689999999987544333 2234668999999999988643 2222
Q ss_pred HH-HHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcc
Q 043190 828 LE-VIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEI 870 (1492)
Q Consensus 828 ~~-~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~ 870 (1492)
.+ ..+.+++.. .++.|++++|||+++. +++.+||+..++
T Consensus 160 ~~~~~~~~l~~~----~~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 160 PEYAALGQLRQR----FPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp HHHHGGGGHHHH----CTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHh----CCCCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 22 112222222 2367899999999873 689999988764
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=1.5e-20 Score=206.72 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=124.3
Q ss_pred Hhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 680 YEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 680 ~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
++++| ++.+|+++|.++++.++ .|++++++||||+|||++++++++..... +.+++|++|+++|+.|+++++++.
T Consensus 33 ~~~~~~~~~~~p~~~Q~~~i~~~l-~g~~~~i~apTGsGKT~~~~~~~~~~~~~--~~rvliv~Pt~~La~Q~~~~l~~~ 109 (237)
T d1gkub1 33 FVEFFRKCVGEPRAIQKMWAKRIL-RKESFAATAPTGVGKTSFGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 109 (237)
T ss_dssp HHHHHHTTTCSCCHHHHHHHHHHH-TTCCEECCCCBTSCSHHHHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHH-CCCCEEEEecCCChHHHHHHHHHHHHHHh--cCeEEEEeccHHHHHHHHHHHHHH
Confidence 45555 67799999999999998 78999999999999999999998877654 689999999999999999999885
Q ss_pred hhhccCCE----EEEEcCCCCcch-----hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 758 LVSQLGKE----MVEMTGDYTPDL-----MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 758 ~~~~~g~~----v~~~~g~~~~~~-----~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
+... |++ +....++..... .....++|+|+||+++.... ..+++++++||||+|.+.+. +...
T Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~------~~~~~~~~vVvDE~d~~l~~-~~~~ 181 (237)
T d1gkub1 110 AEKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY------RELGHFDFIFVDDVDAILKA-SKNV 181 (237)
T ss_dssp HTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS------TTSCCCSEEEESCHHHHHTS-THHH
T ss_pred HHHc-CCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh------hhcCCCCEEEEEChhhhhhc-ccch
Confidence 5443 443 334444433221 12235799999999764322 23678999999999976432 2233
Q ss_pred HHHHHHH------HHhhhccCCceEEEEEcCCCCCh---HHHHHHhcC
Q 043190 829 EVIVSRM------RYISSQTERAVRFIGLSTALANA---GDLADWLGV 867 (1492)
Q Consensus 829 ~~i~~~l------~~~~~~~~~~~~ii~lSATl~~~---~~~~~~l~~ 867 (1492)
..+...+ +..........+++++|||+++. .-+.+++|.
T Consensus 182 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 182 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred hHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhCC
Confidence 3333322 11122334567899999999763 223455554
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.3e-19 Score=184.01 Aligned_cols=114 Identities=23% Similarity=0.373 Sum_probs=96.3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+..++||||+|++.++.+++.|... ...+..+||+|++++|..
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~ 68 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRND-------------------------------------KFTVSAIYSDLPQQERDT 68 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhc-------------------------------------CceEEEeccCCchhhHHH
Confidence 5678999999999999999888653 224889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|+.|..++||||+++++|+|+|.+++||+ ||++ ++...|+||+|||||.| ..|.|+.++++++....
T Consensus 69 ~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~----~d~P---~~~~~yihR~GR~gR~g--~~g~~i~~~~~~d~~~~ 139 (162)
T d1fuka_ 69 IMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLP---ANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 139 (162)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCC---SSGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHhhcccceeeccccccccccCCCceEEEE----eccc---hhHHHHHhhccccccCC--CccEEEEEcCHHHHHHH
Confidence 999999999999999999999999999999997 7653 46778999999999999 78999999988775543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=2.5e-19 Score=191.63 Aligned_cols=167 Identities=22% Similarity=0.310 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
+|+++|.+++..+. ++|+|+++|||||||+++.+++...+.. .+++++|++|+++|+.|.++++.+.+... +.++.
T Consensus 9 ~pr~~Q~~~~~~~~--~~n~lv~~pTGsGKT~i~~~~~~~~~~~-~~~~il~i~P~~~L~~q~~~~~~~~~~~~-~~~v~ 84 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLTK-YGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIV 84 (200)
T ss_dssp CCCHHHHHHHHHGG--GSCEEEECCTTSCHHHHHHHHHHHHHHH-SCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEE
T ss_pred CCCHHHHHHHHHHh--cCCeEEEeCCCCcHHHHHHHHHHHHHHh-cCCcEEEEcCchHHHHHHHHHHHHhhccc-cccee
Confidence 59999999999886 4689999999999999999888776655 36789999999999999999999866544 67788
Q ss_pred EEcCCCCcchh--ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 768 EMTGDYTPDLM--ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 768 ~~~g~~~~~~~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
..+++.....+ .....+|+++||+.+...+.. ....+++++++|+||||++....+ ...+...+.. ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~vIiDE~H~~~~~~~--~~~~~~~~~~----~~~~ 156 (200)
T d1wp9a1 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNYA--YVFIAREYKR----QAKN 156 (200)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTCH--HHHHHHHHHH----HCSS
T ss_pred eeecccchhHHHHhhhcccccccccchhHHHHhh--hhhhccccceEEEEehhhhhcchh--HHHHHHHHHh----cCCC
Confidence 77777654332 223578999999998776665 344578999999999998865432 2222222222 1346
Q ss_pred eEEEEEcCCCCC-hHHHHHHhc
Q 043190 846 VRFIGLSTALAN-AGDLADWLG 866 (1492)
Q Consensus 846 ~~ii~lSATl~~-~~~~~~~l~ 866 (1492)
.++++||||+++ .+++.++++
T Consensus 157 ~~~l~~SATp~~~~~~~~~~~~ 178 (200)
T d1wp9a1 157 PLVIGLTASPGSTPEKIMEVIN 178 (200)
T ss_dssp CCEEEEESCSCSSHHHHHHHHH
T ss_pred CcEEEEEecCCCcHHHHHHHHh
Confidence 789999999865 455555543
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=4e-19 Score=186.36 Aligned_cols=123 Identities=24% Similarity=0.397 Sum_probs=107.3
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..+.++||||+|++.++.++..|... ...+..+||+|++++|.
T Consensus 28 ~~~~~~IIF~~t~~~~~~l~~~l~~~-------------------------------------~~~~~~~h~~~~~~~r~ 70 (200)
T d1oywa3 28 QRGKSGIIYCNSRAKVEDTAARLQSK-------------------------------------GISAAAYHAGLENNVRA 70 (200)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHH
T ss_pred cCCCCEEEEEeeehhhHHhhhhhccC-------------------------------------CceeEEecCCCcHHHHH
Confidence 35678999999999999999887653 23488999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+.+.|++|+++|||||+++++|||+|++++||+ |+++. +..+|+||+|||||.| ..|.|++++.+.+...
T Consensus 71 ~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~----~~~P~---~~~~y~qr~GR~gR~g--~~g~ai~~~~~~d~~~ 141 (200)
T d1oywa3 71 DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR---NIESYYQETGRAGRDG--LPAEAMLFYDPADMAW 141 (200)
T ss_dssp HHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS---SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHH
T ss_pred HHHHHHhcccceEEEecchhhhccCCCCCCEEEE----CCCcc---chHHHHHHhhhhhcCC--CCceEEEecCHHHHHH
Confidence 9999999999999999999999999999999997 66543 6677999999999999 7899999999988888
Q ss_pred HHHHhcCCC
Q 043190 239 YLRLLTSQL 247 (1492)
Q Consensus 239 ~~~~~~~~~ 247 (1492)
+.+++....
T Consensus 142 l~~~i~~~~ 150 (200)
T d1oywa3 142 LRRCLEEKP 150 (200)
T ss_dssp HHHHHHTSC
T ss_pred HHhhhhccc
Confidence 877665543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=3.5e-19 Score=180.79 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=102.4
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
+..+....+.+++||||+|+..++.++..|.. .+..+..+||+++.
T Consensus 18 L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~ 63 (162)
T d1fuka_ 18 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRN----------------------------------DKFTVSAIYSDLPQ 63 (162)
T ss_dssp HHHHHHHTTCSCEEEEESSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCH
T ss_pred HHHHHHhCCCCcEEEEEEEEchHHHHHHHHhh----------------------------------cCceEEEeccCCch
Confidence 33444455678999999999999999987733 36789999999999
Q ss_pred HHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 988 KDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 988 ~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
.+|..+++.|+.|+.+|||||+++++|+|+|++++||+ ||.+ .+...|+||+||+||.| ..|.|+.++
T Consensus 64 ~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~----~d~P------~~~~~yihR~GR~gR~g--~~g~~i~~~ 131 (162)
T d1fuka_ 64 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLP------ANKENYIHRIGRGGRFG--RKGVAINFV 131 (162)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCC------SSGGGGGGSSCSCC-------CEEEEEE
T ss_pred hhHHHHHHHHhhcccceeeccccccccccCCCceEEEE----eccc------hhHHHHHhhccccccCC--CccEEEEEc
Confidence 99999999999999999999999999999999999998 5533 35889999999999988 899999999
Q ss_pred cCCcHHHHHH
Q 043190 1068 HEPKKSFYKK 1077 (1492)
Q Consensus 1068 ~~~~~~~~~~ 1077 (1492)
++.+...+..
T Consensus 132 ~~~d~~~~~~ 141 (162)
T d1fuka_ 132 TNEDVGAMRE 141 (162)
T ss_dssp ETTTHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9887665444
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=8.3e-19 Score=178.97 Aligned_cols=115 Identities=23% Similarity=0.378 Sum_probs=100.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||++++.|+.++..|... ...+..+||++++++|..
T Consensus 33 ~~~k~iiF~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~ 75 (168)
T d2j0sa2 33 TITQAVIFCNTKRKVDWLTEKMREA-------------------------------------NFTVSSMHGDMPQKERES 75 (168)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHH
T ss_pred CCCceEEEeeeHHHHHHHHHHhhhc-------------------------------------ccchhhhhhhhhHHHHHH
Confidence 5678999999999999998887653 223788999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|++|++++||||+.+++|+|+|.+++||+ ||++ ++...|+||+||+||.| ..|.++.++.+++...+
T Consensus 76 ~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn----~d~P---~~~~~yihR~GR~gR~g--~~G~~i~~~~~~d~~~~ 146 (168)
T d2j0sa2 76 IMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLP---NNRELYIHRIGRSGRYG--RKGVAINFVKNDDIRIL 146 (168)
T ss_dssp HHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCC---SSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHH
T ss_pred HHHHHhcCCccEEeccchhcccccccCcceEEE----ecCC---cCHHHHHhhhccccccC--CCcEEEEEECHHHHHHH
Confidence 999999999999999999999999999999997 7754 36677999999999998 67999999988876544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 147 ~ 147 (168)
T d2j0sa2 147 R 147 (168)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=1.7e-18 Score=178.16 Aligned_cols=116 Identities=28% Similarity=0.386 Sum_probs=101.5
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.++.++||||+|++.++.++..|... +..+..+||+|++.+|.
T Consensus 30 ~~~~k~iVF~~~~~~~~~l~~~L~~~-------------------------------------g~~~~~~h~~~~~~~r~ 72 (171)
T d1s2ma2 30 LQINQAIIFCNSTNRVELLAKKITDL-------------------------------------GYSCYYSHARMKQQERN 72 (171)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHH-------------------------------------TCCEEEECTTSCHHHHH
T ss_pred CCCCceEEEEeeeehhhHhHHhhhcc-------------------------------------cccccccccccchhhhh
Confidence 35679999999999999999888653 33488899999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+.+.|++|..++||||+.+++|+|+|..++||+ ||++ ++..+|+||+|||||.| ..|.|+.++++.+...
T Consensus 73 ~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~----~d~p---~~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e~~~ 143 (171)
T d1s2ma2 73 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFP---KTAETYLHRIGRSGRFG--HLGLAINLINWNDRFN 143 (171)
T ss_dssp HHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCC---SSHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHH
T ss_pred hhhhhcccCccccccchhHhhhccccceeEEEEe----cCCc---chHHHHHHHhhhcccCC--CccEEEEEeCHHHHHH
Confidence 9999999999999999999999999999999997 7653 46677999999999998 7799999998887655
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 144 ~~ 145 (171)
T d1s2ma2 144 LY 145 (171)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.3e-18 Score=182.39 Aligned_cols=123 Identities=26% Similarity=0.383 Sum_probs=108.9
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
...+.++||||+|++.++.++..|.. .+..+..+||+++.++|..+
T Consensus 27 ~~~~~~~IIF~~t~~~~~~l~~~l~~----------------------------------~~~~~~~~h~~~~~~~r~~~ 72 (200)
T d1oywa3 27 EQRGKSGIIYCNSRAKVEDTAARLQS----------------------------------KGISAAAYHAGLENNVRADV 72 (200)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred hcCCCCEEEEEeeehhhHHhhhhhcc----------------------------------CCceeEEecCCCcHHHHHHH
Confidence 34567899999999999999877733 36789999999999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++.|++|+++|||||+++++|+|+|++++||+ |+.+ -++.+|+||+|||||.| ..|.|++++.+.+..
T Consensus 73 ~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~----~~~P------~~~~~y~qr~GR~gR~g--~~g~ai~~~~~~d~~ 140 (200)
T d1oywa3 73 QEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIP------RNIESYYQETGRAGRDG--LPAEAMLFYDPADMA 140 (200)
T ss_dssp HHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCC------SSHHHHHHHHTTSCTTS--SCEEEEEEECHHHHH
T ss_pred HHHHhcccceEEEecchhhhccCCCCCCEEEE----CCCc------cchHHHHHHhhhhhcCC--CCceEEEecCHHHHH
Confidence 99999999999999999999999999999998 5533 35999999999999988 899999999998888
Q ss_pred HHHHhhcCC
Q 043190 1074 FYKKFLYEP 1082 (1492)
Q Consensus 1074 ~~~~~l~~~ 1082 (1492)
.+++++.+.
T Consensus 141 ~l~~~i~~~ 149 (200)
T d1oywa3 141 WLRRCLEEK 149 (200)
T ss_dssp HHHHHHHTS
T ss_pred HHHhhhhcc
Confidence 888877554
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=9.8e-19 Score=175.37 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+.+....+.++||||+|++.|+.++..|.+. +..+++.||
T Consensus 21 l~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~-------------------------------------Gi~a~~~Hg 63 (174)
T d1c4oa2 21 MEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-------------------------------------GIRARYLHH 63 (174)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECT
T ss_pred HHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhc-------------------------------------CCceEEEec
Confidence 3445556678999999999999999999988764 223889999
Q ss_pred CCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEE
Q 043190 151 GMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
+|++.+|..+.+.|++|+++|||||+.+++|+|+|++++||+ |++.... .+..+|+||+|||||.| .|.++
T Consensus 64 ~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~----~~~~~~~~~~~~~~~iq~~GR~gR~~---~g~~~ 136 (174)
T d1c4oa2 64 ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNA---RGEVW 136 (174)
T ss_dssp TCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSGGGSHHHHHHHHGGGTTST---TCEEE
T ss_pred ccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEE----eccccccccchhHHHHHHhhhhhhcC---CCeeE
Confidence 999999999999999999999999999999999999999996 7765432 23356999999999986 48888
Q ss_pred EEeCCcc
Q 043190 229 IITSHDK 235 (1492)
Q Consensus 229 ~~~~~~~ 235 (1492)
+++....
T Consensus 137 ~~~~~~~ 143 (174)
T d1c4oa2 137 LYADRVS 143 (174)
T ss_dssp EECSSCC
T ss_pred EeecCCC
Confidence 8876543
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=1.2e-18 Score=176.23 Aligned_cols=114 Identities=25% Similarity=0.454 Sum_probs=100.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||+|++.|+.+++.|.+. ...++.+|+++++.+|..
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~~~~~~~~~~r~~ 69 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRDI-------------------------------------GFKAGAIHGDLSQSQREK 69 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECSSSCHHHHHH
T ss_pred CCCCEEEEECchHHHHHHHhhhccc-------------------------------------ccccccccccchhhhhhh
Confidence 4568999999999999999888653 234889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|++|..++||||+++++|||+|.+++||+ ||++ ++..+|+||+|||||.| ..|.++.++++.+...+
T Consensus 70 ~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~----~d~p---~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~~~ 140 (155)
T d1hv8a2 70 VIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLP---QNPESYMHRIGRTGRAG--KKGKAISIINRREYKKL 140 (155)
T ss_dssp HHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCC---SCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHH
T ss_pred hhhhhhcccceeeeehhHHhhhhhhccCcEEEE----ecCC---CCHHHHHHHHHhcCcCC--CCceEEEEEchHHHHHH
Confidence 999999999999999999999999999999996 6654 46778999999999998 78999999988775544
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=3.5e-18 Score=175.76 Aligned_cols=124 Identities=24% Similarity=0.382 Sum_probs=107.2
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
..+....+.+++||||++++.++.++..|.. .++.+..+||+++.+
T Consensus 24 ~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~----------------------------------~g~~~~~~h~~~~~~ 69 (171)
T d1s2ma2 24 NTLFSKLQINQAIIFCNSTNRVELLAKKITD----------------------------------LGYSCYYSHARMKQQ 69 (171)
T ss_dssp HHHHHHSCCSEEEEECSSHHHHHHHHHHHHH----------------------------------HTCCEEEECTTSCHH
T ss_pred HHHHHhCCCCceEEEEeeeehhhHhHHhhhc----------------------------------ccccccccccccchh
Confidence 3333445678999999999999999988743 367899999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|..++||||+++++|+|+|++++||+ ||.+ .+..+|+||+||+||.| ..|.|+.|+.
T Consensus 70 ~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~----~d~p------~~~~~y~qr~GR~gR~g--~~g~~i~~v~ 137 (171)
T d1s2ma2 70 ERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFP------KTAETYLHRIGRSGRFG--HLGLAINLIN 137 (171)
T ss_dssp HHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCC------SSHHHHHHHHCBSSCTT--CCEEEEEEEC
T ss_pred hhhhhhhhcccCccccccchhHhhhccccceeEEEEe----cCCc------chHHHHHHHhhhcccCC--CccEEEEEeC
Confidence 9999999999999999999999999999999999998 5533 35899999999999987 8899999999
Q ss_pred CCcHHHHHHh
Q 043190 1069 EPKKSFYKKF 1078 (1492)
Q Consensus 1069 ~~~~~~~~~~ 1078 (1492)
+.+...+..+
T Consensus 138 ~~e~~~~~~i 147 (171)
T d1s2ma2 138 WNDRFNLYKI 147 (171)
T ss_dssp GGGHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887665544
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.3e-18 Score=175.69 Aligned_cols=120 Identities=21% Similarity=0.361 Sum_probs=104.3
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
...+..++||||++++.|+.++..|.. .+..+..+||+++.++|..
T Consensus 30 ~~~~~~k~iiF~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~r~~ 75 (168)
T d2j0sa2 30 DTLTITQAVIFCNTKRKVDWLTEKMRE----------------------------------ANFTVSSMHGDMPQKERES 75 (168)
T ss_dssp HHHTSSEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCCEEECTTSCHHHHHH
T ss_pred HhCCCCceEEEeeeHHHHHHHHHHhhh----------------------------------cccchhhhhhhhhHHHHHH
Confidence 334567899999999999999877743 3667899999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+++.|++|+.++||||+++++|+|+|++++||+ ||.+ .+...|+||+||+||.| ..|.++.++.+.+.
T Consensus 76 ~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn----~d~P------~~~~~yihR~GR~gR~g--~~G~~i~~~~~~d~ 143 (168)
T d2j0sa2 76 IMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLP------NNRELYIHRIGRSGRYG--RKGVAINFVKNDDI 143 (168)
T ss_dssp HHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCC------SSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGH
T ss_pred HHHHHhcCCccEEeccchhcccccccCcceEEE----ecCC------cCHHHHHhhhccccccC--CCcEEEEEECHHHH
Confidence 999999999999999999999999999999998 5533 35899999999999987 88999999998887
Q ss_pred HHHHHh
Q 043190 1073 SFYKKF 1078 (1492)
Q Consensus 1073 ~~~~~~ 1078 (1492)
..+..+
T Consensus 144 ~~~~~i 149 (168)
T d2j0sa2 144 RILRDI 149 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=3.8e-18 Score=171.09 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=100.2
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..++++||||+|++.|+.++..|.+ .++.+..+||+|++.+|..++
T Consensus 29 ~~g~r~lvfc~t~~~~~~l~~~L~~----------------------------------~Gi~a~~~Hg~~~~~eR~~~l 74 (174)
T d1c4oa2 29 ARGERTLVTVLTVRMAEELTSFLVE----------------------------------HGIRARYLHHELDAFKRQALI 74 (174)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTCCHHHHHHHH
T ss_pred hcCCcEEEEEcchhHHHHHHHHHHh----------------------------------cCCceEEEecccchHHHHHHH
Confidence 4678999999999999999988844 377899999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+++... ++.+..+|+||+|||||.| .|.+++++.....
T Consensus 75 ~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~----~~~~~~~-~~~~~~~~iq~~GR~gR~~---~g~~~~~~~~~~~ 144 (174)
T d1c4oa2 75 RDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARNA---RGEVWLYADRVSE 144 (174)
T ss_dssp HHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCS-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCCH
T ss_pred HHHHCCCeEEEEeeeeeeeeccCCCCcEEEE----ecccccc-ccchhHHHHHHhhhhhhcC---CCeeEEeecCCCH
Confidence 9999999999999999999999999999998 6654321 3456789999999999976 6888888765543
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.74 E-value=3e-18 Score=175.55 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=96.8
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+....+.++||||++++.++.++..|.+. +..++++||+|
T Consensus 23 ~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~-------------------------------------g~~~~~~hg~~ 65 (181)
T d1t5la2 23 EIRERVERNERTLVTTLTKKMAEDLTDYLKEA-------------------------------------GIKVAYLHSEI 65 (181)
T ss_dssp HHHHHHHTTCEEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECSSC
T ss_pred HHHHHHhcCCeEEEEeehhhhhHHHHHHHHhC-------------------------------------CcceeEecCCc
Confidence 45555577889999999999999999888643 23489999999
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEEE
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
++++|..+.+.|++|+++|||||+.+++|||+|.+++||+ ||++.. .++...|.||+|||||.| .|.++++
T Consensus 66 ~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~p~~~~~~s~~~yi~R~GRagR~g---~~~~~~~ 138 (181)
T d1t5la2 66 KTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNA---NGHVIMY 138 (181)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEE----TTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEE
T ss_pred cHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEE----ecCCcccccccHHHHHHHHHhhcccc---CceeEee
Confidence 9999999999999999999999999999999999999997 665432 234556889999999987 3666555
Q ss_pred eCCc
Q 043190 231 TSHD 234 (1492)
Q Consensus 231 ~~~~ 234 (1492)
....
T Consensus 139 ~~~~ 142 (181)
T d1t5la2 139 ADTI 142 (181)
T ss_dssp CSSC
T ss_pred cchh
Confidence 5443
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.9e-18 Score=175.29 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=96.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
++.++||||++++.++.+++.|.+. ...+.++||+|++++|..
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~ihg~~~~~~r~~ 68 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVEQ-------------------------------------NFPAIAIHRGMPQEERLS 68 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCeEEEEEeeeecchhhhhhhccc-------------------------------------cccccccccccchhhhhh
Confidence 4678999999999999998887643 234889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+++.|++|.++|||||+.+++|+|+|..+.||. ||++ .+..+|+||+|||||.| ..|.||.++++.+
T Consensus 69 ~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~----~~~p---~~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 69 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMP---EDSDTYLHRVARAGRFG--TKGLAITFVSDEN 135 (168)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCC---SSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred hhhhhccccceeeeccccccchhhcccchhhhh----hhcc---cchhhHhhhhhhcccCC--CccEEEEEECchH
Confidence 999999999999999999999999999998886 6653 35667999999999988 7799999887654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=7.2e-18 Score=170.46 Aligned_cols=115 Identities=24% Similarity=0.404 Sum_probs=101.7
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.+.++||||++++.|+.++..|.+ .+..+..+|++++..+|..+++
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~----------------------------------~g~~~~~~~~~~~~~~r~~~~~ 72 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRD----------------------------------IGFKAGAIHGDLSQSQREKVIR 72 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECSSSCHHHHHHHHH
T ss_pred CCCCEEEEECchHHHHHHHhhhcc----------------------------------cccccccccccchhhhhhhhhh
Confidence 456899999999999999887743 3678899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHH
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~ 1075 (1492)
.|++|+.+|||||+++++|+|+|++++||+ |+.+ .++.+|+||+||+||.| ..|.++.++.+.+...+
T Consensus 73 ~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~----~d~p------~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~~~ 140 (155)
T d1hv8a2 73 LFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLP------QNPESYMHRIGRTGRAG--KKGKAISIINRREYKKL 140 (155)
T ss_dssp HHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCC------SCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHH
T ss_pred hhhcccceeeeehhHHhhhhhhccCcEEEE----ecCC------CCHHHHHHHHHhcCcCC--CCceEEEEEchHHHHHH
Confidence 999999999999999999999999999998 5533 36999999999999987 78999999988876655
Q ss_pred H
Q 043190 1076 K 1076 (1492)
Q Consensus 1076 ~ 1076 (1492)
.
T Consensus 141 ~ 141 (155)
T d1hv8a2 141 R 141 (155)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1e-17 Score=171.17 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=100.1
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+......+++||||++++.++.++..|.+ .+..+..+||+|++++|
T Consensus 21 ll~~~~~~k~iIF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~ihg~~~~~~r 66 (168)
T d1t5ia_ 21 LLDVLEFNQVVIFVKSVQRCIALAQLLVE----------------------------------QNFPAIAIHRGMPQEER 66 (168)
T ss_dssp HHHHSCCSSEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHH
T ss_pred HHHhCCCCeEEEEEeeeecchhhhhhhcc----------------------------------ccccccccccccchhhh
Confidence 33334567899999999999999877733 36788999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+++|||||+++++|+|+|.+++||+ |+.+ .+...|+||+||+||.| ..|.|+.++++.
T Consensus 67 ~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~----~~~p------~~~~~yiqr~GR~gR~g--~~g~~i~l~~~~ 134 (168)
T d1t5ia_ 67 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMP------EDSDTYLHRVARAGRFG--TKGLAITFVSDE 134 (168)
T ss_dssp HHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCC------SSHHHHHHHHHHHTGGG--CCCEEEEEECSH
T ss_pred hhhhhhhccccceeeeccccccchhhcccchhhhh----hhcc------cchhhHhhhhhhcccCC--CccEEEEEECch
Confidence 99999999999999999999999999999999998 5533 35899999999999987 789999998775
Q ss_pred cH
Q 043190 1071 KK 1072 (1492)
Q Consensus 1071 ~~ 1072 (1492)
+.
T Consensus 135 ~~ 136 (168)
T d1t5ia_ 135 ND 136 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.71 E-value=2.4e-17 Score=168.74 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=96.1
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++||||+++..++.++..|.+ .++.+..+||+|++.+|..++
T Consensus 29 ~~~~~~iif~~~~~~~~~~~~~l~~----------------------------------~g~~~~~~hg~~~~~eR~~~l 74 (181)
T d1t5la2 29 ERNERTLVTTLTKKMAEDLTDYLKE----------------------------------AGIKVAYLHSEIKTLERIEII 74 (181)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHT----------------------------------TTCCEEEECSSCCHHHHHHHH
T ss_pred hcCCeEEEEeehhhhhHHHHHHHHh----------------------------------CCcceeEecCCccHHHHHHHH
Confidence 3567899999999999999887732 377899999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|++|+++|||||+++++|+|+|++++||+ ||.+... ...+..+|+||+|||||.| .|.++++.....
T Consensus 75 ~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~p~~~-~~~s~~~yi~R~GRagR~g---~~~~~~~~~~~~ 143 (181)
T d1t5la2 75 RDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARNA---NGHVIMYADTIT 143 (181)
T ss_dssp HHHHHTSCSEEEESCCCSSSCCCTTEEEEEE----TTTTSCS-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HHHHCCCCCEEEehhHHHccCCCCCCCEEEE----ecCCccc-ccccHHHHHHHHHhhcccc---CceeEeecchhh
Confidence 9999999999999999999999999999998 6655321 2346889999999999976 455555554433
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.63 E-value=9.7e-17 Score=156.22 Aligned_cols=104 Identities=24% Similarity=0.252 Sum_probs=83.1
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.+++++||||+|++.|+.+|+.|.+. ...+..+|++|+.++
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~-------------------------------------G~~~~~~H~~~~~~~-- 73 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVAL-------------------------------------GINAVAYYRGLDVSV-- 73 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHH-------------------------------------TCEEEEECTTCCSCC--
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhcc-------------------------------------ccchhhhhccchhhh--
Confidence 35678999999999999999998754 233788999999776
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|++|+.+|||||+++++||| |++..||+-...|+++. +..+|+||+||||| | ..|. +.++.+.
T Consensus 74 -----~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~---~~~~y~qr~GR~gR-g--~~G~-~~~i~~~ 136 (138)
T d1jr6a_ 74 -----IPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQ---DAVSRTQRRGRTGR-G--KPGI-YRFVAPG 136 (138)
T ss_dssp -----CTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEEC---CHHHHHHHHTTBCS-S--SCEE-EEECCSS
T ss_pred -----hhhhhcceeehhHHHHhccc-cccceEEEEEecCCCCC---CHHHHHhHhccccC-C--CCcE-EEEEcCC
Confidence 67899999999999999999 99988887444454332 55679999999999 8 6786 4455443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.61 E-value=6.9e-16 Score=150.12 Aligned_cols=104 Identities=22% Similarity=0.173 Sum_probs=85.0
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++||||+|++.|+.++..|.+ .+..+..+|++|+.++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~----------------------------------~G~~~~~~H~~~~~~~------ 73 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVA----------------------------------LGINAVAYYRGLDVSV------ 73 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHH----------------------------------HTCEEEEECTTCCSCC------
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhc----------------------------------cccchhhhhccchhhh------
Confidence 467899999999999999988843 3678899999998765
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|++|+.+|||||+++++|+| |++..||+-.-.|+ .+-+..+|+||+||||| | .+|. +.++.+.+
T Consensus 74 -~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~------~P~~~~~y~qr~GR~gR-g--~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 74 -IPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDG------KPQDAVSRTQRRGRTGR-G--KPGI-YRFVAPGE 137 (138)
T ss_dssp -CTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETT------EECCHHHHHHHHTTBCS-S--SCEE-EEECCSSC
T ss_pred -hhhhhcceeehhHHHHhccc-cccceEEEEEecCC------CCCCHHHHHhHhccccC-C--CCcE-EEEEcCCC
Confidence 67899999999999999999 99999998332233 23368999999999999 7 7896 55665543
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.61 E-value=1e-15 Score=170.21 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|+++|.+++..++ .+++.++.+|||+|||+++...+...... ...++|+++|+++|+.|.++++.+... .....+.
T Consensus 113 ~~rdyQ~~av~~~l-~~~~~il~~pTGsGKT~i~~~i~~~~~~~-~~~k~Liivp~~~Lv~Q~~~~f~~~~~-~~~~~~~ 189 (282)
T d1rifa_ 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL-FSHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTS-CCGGGEE
T ss_pred ccchHHHHHHHHHH-hcCCceeEEEcccCccHHHHHHHHHhhhc-ccceEEEEEcCchhHHHHHHHHHHhhc-cccccce
Confidence 49999999999998 56788999999999999876555433333 467999999999999999999877432 2234466
Q ss_pred EEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceE
Q 043190 768 EMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR 847 (1492)
Q Consensus 768 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 847 (1492)
...++...........+|+++|++++....+ .+++++++||+||||+.. +..+..++.+ ......
T Consensus 190 ~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~~-----~~~~~f~~VIvDEaH~~~---a~~~~~il~~-------~~~~~~ 254 (282)
T d1rifa_ 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLAT---GKSISSIISG-------LNNCMF 254 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSCG-----GGGGGEEEEEEETGGGCC---HHHHHHHTTT-------CTTCCE
T ss_pred eecceecccccccccceEEEEeeehhhhhcc-----cccCCCCEEEEECCCCCC---chhHHHHHHh-------ccCCCe
Confidence 6666655544445578999999987644333 346789999999999873 3333333322 222233
Q ss_pred EEEEcCCCCCh
Q 043190 848 FIGLSTALANA 858 (1492)
Q Consensus 848 ii~lSATl~~~ 858 (1492)
.+|||||+++.
T Consensus 255 rlGlTaT~~~~ 265 (282)
T d1rifa_ 255 KFGLSGSLRDG 265 (282)
T ss_dssp EEEECSSCCTT
T ss_pred EEEEEeecCCC
Confidence 48999998663
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=5e-15 Score=159.64 Aligned_cols=154 Identities=20% Similarity=0.298 Sum_probs=118.1
Q ss_pred hhcCCCCCCHHHHHHHHhhhc-----CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYH-----TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~-----~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+-++|+ +|+-|.+|+..+.+ ...+.+++|.||||||.+|+.+++..+.. +.++++++||..||.|.++.+++
T Consensus 78 ~~LPFe-LT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~--g~q~~~m~Pt~~La~Qh~~~~~~ 154 (264)
T d1gm5a3 78 KSLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVE 154 (264)
T ss_dssp HHSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHH
T ss_pred hhcccc-CCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc--ccceeEEeehHhhhHHHHHHHHH
Confidence 334675 99999999998752 23478999999999999999999998876 89999999999999999999999
Q ss_pred HhhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHH
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~ 829 (1492)
.|... |.++..++|+.....+. ..+.+|+|||.. ++.. ...++++++|||||-|..+-.....
T Consensus 155 ~f~~~-~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs----l~~~---~~~f~~LglviiDEqH~fgv~Qr~~-- 224 (264)
T d1gm5a3 155 SFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA----LIQE---DVHFKNLGLVIIDEQHRFGVKQREA-- 224 (264)
T ss_dssp HHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT----HHHH---CCCCSCCCEEEEESCCCC-----CC--
T ss_pred hhhhc-cccceeeccccchHHHHHHHHHHHCCCCCEEEeehH----HhcC---CCCccccceeeeccccccchhhHHH--
Confidence 99877 89999999988754321 247899999974 3332 2336789999999999775321100
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.......+.++.||||+..
T Consensus 225 ---------l~~~~~~~~~l~~SATPip 243 (264)
T d1gm5a3 225 ---------LMNKGKMVDTLVMSATPIP 243 (264)
T ss_dssp ---------CCSSSSCCCEEEEESSCCC
T ss_pred ---------HHHhCcCCCEEEEECCCCH
Confidence 0112346789999999754
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.6e-14 Score=152.48 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=118.1
Q ss_pred hhcCCCCCCHHHHHHHHhhh---cC--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILY---HT--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~---~~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+-++|. +++-|.+++..+. .. ..+.+++|.||||||.+|+.++...+.. +.++++++|+..|+.|.++++++
T Consensus 50 ~~lP~~-lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~--g~qv~~l~Pt~~La~Q~~~~~~~ 126 (233)
T d2eyqa3 50 DSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLVPTTLLAQQHYDNFRD 126 (233)
T ss_dssp HTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHH
T ss_pred hccccc-cchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc--CCceEEEccHHHhHHHHHHHHHH
Confidence 334555 9999999998764 22 3488999999999999999999998875 89999999999999999999999
Q ss_pred HhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHH
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~ 829 (1492)
.|... |.++..++|......+ .....+|+|+|-- ++.. ...++++++|||||-|..+ ..-+
T Consensus 127 ~~~~~-~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths----~l~~---~~~f~~LgLiIiDEeH~fg----~kQ~ 194 (233)
T d2eyqa3 127 RFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK----LLQS---DVKFKDLGLLIVDEEHRFG----VRHK 194 (233)
T ss_dssp HSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH----HHHS---CCCCSSEEEEEEESGGGSC----HHHH
T ss_pred HHhhC-CCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehh----hhcc---CCccccccceeeechhhhh----hHHH
Confidence 88877 8999999998775432 1236799999964 3332 2346899999999999653 2222
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.. ++.. ..++.++.+|||+..
T Consensus 195 ~~---l~~~----~~~~~~l~~SATPip 215 (233)
T d2eyqa3 195 ER---IKAM----RANVDILTLTATPIP 215 (233)
T ss_dssp HH---HHHH----HTTSEEEEEESSCCC
T ss_pred HH---HHhh----CCCCCEEEEecchhH
Confidence 21 2221 236889999999754
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.59 E-value=9.6e-16 Score=152.98 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=92.6
Q ss_pred hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 700 LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 700 ~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
+++.|+++++++|||||||.+++.+++..... .+.++++++|+++++.|.++.+.. . +..+....+. ...
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-~~~~vli~~p~~~l~~q~~~~~~~----~-~~~~~~~~~~----~~~ 72 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHG----L-DVKFHTQAFS----AHG 72 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT----S-CEEEESSCCC----CCC
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhh-cCceeeeeecchhHHHHHHHHhhh----h-hhhhcccccc----ccc
Confidence 46689999999999999999988777776655 378999999999999998765432 1 2232222221 112
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
.....+.++|...+.... .....+.++++||+||||.+.... ......+..+. ...+.++|+||||+|
T Consensus 73 ~~~~~~~~~~~~~l~~~~---~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~~~~~~-----~~~~~~~l~lTATPp 140 (140)
T d1yksa1 73 SGREVIDAMCHATLTYRM---LEPTRVVNWEVIIMDEAHFLDPAS-IAARGWAAHRA-----RANESATILMTATPP 140 (140)
T ss_dssp CSSCCEEEEEHHHHHHHH---TSSSCCCCCSEEEETTTTCCSHHH-HHHHHHHHHHH-----HTTSCEEEEECSSCT
T ss_pred ccccchhhhhHHHHHHHH---hccccccceeEEEEccccccChhh-HHHHHHHHHHh-----hCCCCCEEEEEcCCC
Confidence 234567777877554332 344567899999999999874322 12222222222 135789999999986
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=4.8e-16 Score=136.75 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=74.6
Q ss_pred cccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHHHHHHHHH
Q 043190 249 IESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDK 326 (1492)
Q Consensus 249 ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 326 (1492)
|+|+|.. .|++|+|+||++|++.+.+|+++|+++||+|+|+.++| .+.|++++++|.+
T Consensus 2 i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l--------------------~~~i~~~l~~L~~ 61 (85)
T d2p6ra1 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL--------------------SYELERVVRQLEN 61 (85)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC--------------------HHHHHHHHHHHHH
T ss_pred ceeCCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhhcH--------------------HHHHHHHHHHHHH
Confidence 6788854 89999999999999999999999999999999998765 4678999999999
Q ss_pred hccccccccCCceEeCCCcchhhhccc
Q 043190 327 AKMMRFDEKSGNFYCTELGRIASHFYI 353 (1492)
Q Consensus 327 ~~~i~~~~~~~~~~~t~~G~~~s~~~i 353 (1492)
+|||+.+ +.+.||++|++||+|||
T Consensus 62 ~~~I~~~---~~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 62 WGMVVEA---AHLAPTKLGSLVSRLYI 85 (85)
T ss_dssp TTSEEES---SSEEECHHHHHHHHTTC
T ss_pred CCCcccc---cccccCHHHHHHHHHhC
Confidence 9999865 56999999999999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.57 E-value=2.4e-15 Score=148.74 Aligned_cols=131 Identities=21% Similarity=0.072 Sum_probs=89.4
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
+..+..++.||||||||+++...+.+ .+.+++|++|+++|++|..+.+.+.+.. ......++.. ...
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~~-----~~~~vli~~P~~~l~~q~~~~~~~~~~~----~~~~~~~~~~----~~~ 72 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYAA-----QGYKVLVLNPSVAATLGFGAYMSKAHGV----DPNIRTGVRT----ITT 72 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHT-----TTCCEEEEESCHHHHHHHHHHHHHHHSC----CCEEECSSCE----ECC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHHH-----cCCcEEEEcChHHHHHHHHHHHHHHhhc----cccccccccc----ccc
Confidence 45678999999999999876554432 3789999999999999999888776543 2333333322 223
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
...+.++|.+...... ...++++++||+||+|++.......+..++. ... ...+.++++||||+
T Consensus 73 ~~~~~~~~~~~~~~~~-----~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~----~~~-~~~~~~~l~~TATP 136 (136)
T d1a1va1 73 GSPITYSTYGKFLADG-----GCSGGAYDIIICDECHSTDATSILGIGTVLD----QAE-TAGARLVVLATATP 136 (136)
T ss_dssp CCSEEEEEHHHHHHTT-----GGGGCCCSEEEEETTTCCSHHHHHHHHHHHH----HTT-TTTCSEEEEEESSC
T ss_pred ccceEEEeeeeecccc-----chhhhcCCEEEEecccccCHHHHHHHHHHHH----HHH-HCCCCcEEEEeCCC
Confidence 5678999988654332 3357889999999999874332222322222 222 24577999999995
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=9.4e-15 Score=155.25 Aligned_cols=136 Identities=22% Similarity=0.215 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|+|+|.+++..++ .+++.++++|||+|||++++..+.+. +.++||++|+++|+.|..+++.. +. ...+.
T Consensus 70 ~Lr~yQ~eav~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~Liv~p~~~L~~q~~~~~~~-~~---~~~~~ 139 (206)
T d2fz4a1 70 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FG---EEYVG 139 (206)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-GC---GGGEE
T ss_pred CcCHHHHHHHHHHH-hCCCcEEEeCCCCCceehHHhHHHHh-----cCceeEEEcccchHHHHHHHHHh-hc---ccchh
Confidence 49999999999998 56788999999999999876554332 57899999999999997776654 22 23456
Q ss_pred EEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceE
Q 043190 768 EMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR 847 (1492)
Q Consensus 768 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 847 (1492)
...|+.. ...+|+++|++.+...... ..+++++||+||||++... .+..++. .. ...+
T Consensus 140 ~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a~---~~~~i~~-------~~-~~~~ 197 (206)
T d2fz4a1 140 EFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIAQ-------MS-IAPF 197 (206)
T ss_dssp EESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHHH-------TC-CCSE
T ss_pred hcccccc------cccccccceehhhhhhhHh-----hCCcCCEEEEECCeeCCcH---HHHHHHh-------cc-CCCc
Confidence 6666432 2457999999876544332 2457899999999988532 3333332 11 2446
Q ss_pred EEEEcCCC
Q 043190 848 FIGLSTAL 855 (1492)
Q Consensus 848 ii~lSATl 855 (1492)
.+|||||+
T Consensus 198 ~lgLTATl 205 (206)
T d2fz4a1 198 RLGLTATF 205 (206)
T ss_dssp EEEEEESC
T ss_pred EEEEecCC
Confidence 78999997
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=8.2e-14 Score=142.09 Aligned_cols=122 Identities=20% Similarity=0.365 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEc
Q 043190 70 CYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHH 149 (1492)
Q Consensus 70 ~~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hh 149 (1492)
+++.+...+..|+|+.+.||.-++.+.++..+.+..+ ...|++.|
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p-----------------------------------~~~i~~lH 64 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGH 64 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEEECC
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCC-----------------------------------ceEEEEEE
Confidence 4556667778999999999999999988888776533 22499999
Q ss_pred CCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEE
Q 043190 150 AGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGII 229 (1492)
Q Consensus 150 agl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~ 229 (1492)
|.|++++++.+.+.|++|+++|||||++.+.|||+|..++|| .++++..++ ....|..||.||.+ ..|.|++
T Consensus 65 Gkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~ii----I~~a~rfGL--aQLhQLRGRVGR~~--~~s~c~l 136 (211)
T d2eyqa5 65 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII----IERADHFGL--AQLHQLRGRVGRSH--HQAYAWL 136 (211)
T ss_dssp SSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE----ETTTTSSCH--HHHHHHHTTCCBTT--BCEEEEE
T ss_pred eccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEE----Eecchhccc--cccccccceeeecC--ccceEEE
Confidence 999999999999999999999999999999999999988777 366554332 23566899999988 6799999
Q ss_pred EeCCc
Q 043190 230 ITSHD 234 (1492)
Q Consensus 230 ~~~~~ 234 (1492)
++++.
T Consensus 137 ~~~~~ 141 (211)
T d2eyqa5 137 LTPHP 141 (211)
T ss_dssp EECCG
T ss_pred EecCC
Confidence 99654
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=1.3e-14 Score=150.51 Aligned_cols=132 Identities=20% Similarity=0.326 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEc
Q 043190 70 CYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHH 149 (1492)
Q Consensus 70 ~~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hh 149 (1492)
+++.+.+.+..|+|+.+.||..++.+.+...-.....+.-....+ + ...+++.|
T Consensus 18 v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~--------------------p------~~~v~~lH 71 (206)
T d1gm5a4 18 VYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF--------------------P------EFKLGLMH 71 (206)
T ss_dssp HHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC-----------------------------CBCCCC
T ss_pred HHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcC--------------------C------CCeEEEEe
Confidence 456667777899999999998777655421111110000000000 0 22488899
Q ss_pred CCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEE
Q 043190 150 AGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGII 229 (1492)
Q Consensus 150 agl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~ 229 (1492)
|.|++++|+.+.+.|++|+++|||||++.++|||+|+.++||. |+++. +....+.|+.||+||.| ..|.|++
T Consensus 72 G~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii----~~a~~--fglsqlhQlrGRvGR~~--~~~~~~l 143 (206)
T d1gm5a4 72 GRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER--FGLAQLHQLRGRVGRGG--QEAYCFL 143 (206)
T ss_dssp SSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS--SCTTHHHHHHHTSCCSS--TTCEEEC
T ss_pred ecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEE----EccCC--ccHHHHHhhhhheeecc--ccceeEe
Confidence 9999999999999999999999999999999999999997773 66654 22333556799999998 7799999
Q ss_pred EeCCcc
Q 043190 230 ITSHDK 235 (1492)
Q Consensus 230 ~~~~~~ 235 (1492)
++++..
T Consensus 144 ~~~~~~ 149 (206)
T d1gm5a4 144 VVGDVG 149 (206)
T ss_dssp CCCSCC
T ss_pred eecccc
Confidence 987654
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=2.9e-14 Score=147.80 Aligned_cols=89 Identities=25% Similarity=0.468 Sum_probs=76.2
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
+..++.+||+|++++|+.+++.|++|+++|||||+++++|||+|++++||. |+++ .+..+.+.|..||+||
T Consensus 64 ~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii----~~a~-----~fglsqlhQlrGRvGR 134 (206)
T d1gm5a4 64 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPE-----RFGLAQLHQLRGRVGR 134 (206)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCS-----SSCTTHHHHHHHTSCC
T ss_pred CCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEE----EccC-----CccHHHHHhhhhheee
Confidence 457889999999999999999999999999999999999999999998776 4432 2357899999999999
Q ss_pred CCCCCceEEEEEecCCcHHH
Q 043190 1055 PQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
.| ..|.|++++++.....
T Consensus 135 ~~--~~~~~~l~~~~~~~~~ 152 (206)
T d1gm5a4 135 GG--QEAYCFLVVGDVGEEA 152 (206)
T ss_dssp SS--TTCEEECCCCSCCHHH
T ss_pred cc--ccceeEeeeccccccc
Confidence 87 8999999987655433
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.44 E-value=8e-14 Score=142.00 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=145.2
Q ss_pred chhhHHHHHHHhhc-CCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhc--CC-cccccCCC----CChhHHHHHHHH
Q 043190 354 QYSSVETYNEMLRR-HMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQT--LC-PVEVKGGP----SNKHGKISILIQ 425 (1492)
Q Consensus 354 ~~~T~~~~~~~l~~-~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~--~~-~~~~~~~~----~~~~~K~~~Llq 425 (1492)
||.|+..|.+.+.+ ..+...+|+++|.+|+|..+..|..|......+... .. ..+..... .....|++++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCcchHHHHHHcCCCCccccCcchhHHHHHHHHHHHHhhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 68899999998876 458889999999999999999998887655554443 01 11111111 135789999999
Q ss_pred HHHcCCCCC----CchhH-hhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHH
Q 043190 426 LYISRGWID----TFSLV-SDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAE 500 (1492)
Q Consensus 426 a~i~~~~~~----~~~l~-~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~ 500 (1492)
+|+++.++. .|++. ||++.++++|.|+++++.++|...+|.. +-+|.++|.+|+.++..||.++| ++|+.
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~ell~L~~i~-gvgr~ 155 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEELLELVRIR-HIGRV 155 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGGGHHHHTST-TCCHH
T ss_pred HHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHccCCHHHHhHhcCC-CCCHH
Confidence 999999876 56666 9999999999999999999999998853 45689999999999999999999 99999
Q ss_pred HHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHh
Q 043190 501 ILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYL 540 (1492)
Q Consensus 501 ~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~ 540 (1492)
++++|++.|+ |+.+|..+++..+ ..++ +.+|.++.+.+
T Consensus 156 rAr~L~~~Gi~t~~dl~~a~~~~~-~~~~-~g~g~ki~~~i 194 (198)
T d2p6ra2 156 RARKLYNAGIRNAEDIVRHREKVA-SLIG-RGIAERVVEGI 194 (198)
T ss_dssp HHHHHHTTTCCSHHHHHHTHHHHH-HHHC-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHccHhhH-HHHh-cchHHHHHHHh
Confidence 9999999999 9999999865433 3443 57888877765
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2.4e-13 Score=138.63 Aligned_cols=115 Identities=22% Similarity=0.365 Sum_probs=97.8
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
....++++.+.||..+..+.++..+.+.. ....|+++||.|++++++.
T Consensus 27 El~rGgQvy~V~p~I~~~e~~~~~l~~~~--------------------------------p~~~i~~lHGkm~~~eke~ 74 (211)
T d2eyqa5 27 EILRGGQVYYLYNDVENIQKAAERLAELV--------------------------------PEARIAIGHGQMRERELER 74 (211)
T ss_dssp HHTTTCEEEEECCCSSCHHHHHHHHHHHC--------------------------------TTSCEEECCSSCCHHHHHH
T ss_pred HHHcCCeEEEEEcCccchhhHHHHHHHhC--------------------------------CceEEEEEEeccCHHHHHH
Confidence 34678999999999999988887775543 2467999999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
++..|++|+++|||||++++.|||+|+.+++|. ++. ..+..+++.|..||+||.+ ..|.||++++.+
T Consensus 75 im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI----~~a-----~rfGLaQLhQLRGRVGR~~--~~s~c~l~~~~~ 141 (211)
T d2eyqa5 75 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERA-----DHFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 141 (211)
T ss_dssp HHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTT-----TSSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred HHHHHHcCCcceEEEehhhhhccCCCCCcEEEE----ecc-----hhccccccccccceeeecC--ccceEEEEecCC
Confidence 999999999999999999999999999997664 222 2246899999999999976 889999998754
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.42 E-value=3.3e-13 Score=151.71 Aligned_cols=120 Identities=20% Similarity=0.357 Sum_probs=88.5
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
..++.++||||+++..+..++..|.+..... . ...+......|++++..+|..+
T Consensus 158 ~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~----~----------------------~~~g~~~~~~~~~~~~~~~~~~ 211 (286)
T d1wp9a2 158 RKQNSKIIVFTNYRETAKKIVNELVKDGIKA----K----------------------RFVGQASKENDRGLSQREQKLI 211 (286)
T ss_dssp HCTTCCEEEECSCHHHHHHHHHHHHHTTCCE----E----------------------EECCSSCC-------CCHHHHH
T ss_pred hCCCCcEEEEeCcHHhHHHHHHHHHHcCCce----E----------------------EeeccccccccchhchHHHHHH
Confidence 3567899999999999999998875421000 0 0012222334678888999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
++.|++|+++|||||+++++|+|+|++++||+ ||++ .++..|+||+||+||.+ .|.+++|+.++..
T Consensus 212 ~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~----~d~~------~~~~~~~Qr~GR~gR~~---~~~~~~l~~~~~~ 277 (286)
T d1wp9a2 212 LDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEPV------PSAIRSIQRRGRTGRHM---PGRVIILMAKGTR 277 (286)
T ss_dssp HHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSCC------HHHHHHHHHHTTSCSCC---CSEEEEEEETTSH
T ss_pred HHHHHcCCCcEEEEccceeccccCCCCCEEEE----eCCC------CCHHHHHHHHHhCCCCC---CCEEEEEEeCCCH
Confidence 99999999999999999999999999999998 5532 24789999999999964 7888888887643
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=9.7e-14 Score=121.83 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=73.0
Q ss_pred eeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCC
Q 043190 1085 VESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGC 1162 (1492)
Q Consensus 1085 ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~ 1162 (1492)
++|+|.. .|.+|++++|+.|.+.+.+|+++|+++||+|.|+.+|| .+.|+++++.|.++||
T Consensus 2 i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l-----------------~~~i~~~l~~L~~~~~ 64 (85)
T d2p6ra1 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL-----------------SYELERVVRQLENWGM 64 (85)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC-----------------HHHHHHHHHHHHHTTS
T ss_pred ceeCCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhhcH-----------------HHHHHHHHHHHHHCCC
Confidence 5677755 59999999999999999999999999999999987654 3568899999999999
Q ss_pred ceecCCccccccchhhhhhccc
Q 043190 1163 VKMTEDTVEPTMLGTIASQYYL 1184 (1492)
Q Consensus 1163 i~~~~~~~~~T~lG~~~s~~~i 1184 (1492)
|+.++ .+.||++|++||+|||
T Consensus 65 I~~~~-~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 65 VVEAA-HLAPTKLGSLVSRLYI 85 (85)
T ss_dssp EEESS-SEEECHHHHHHHHTTC
T ss_pred ccccc-ccccCHHHHHHHHHhC
Confidence 98765 4999999999999997
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.38 E-value=1.9e-13 Score=153.80 Aligned_cols=118 Identities=25% Similarity=0.396 Sum_probs=87.4
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.++.++||||+++..++.+++.|.+...... .+ .+......|++++..+|.
T Consensus 159 ~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~---~~--------------------------~g~~~~~~~~~~~~~~~~ 209 (286)
T d1wp9a2 159 KQNSKIIVFTNYRETAKKIVNELVKDGIKAK---RF--------------------------VGQASKENDRGLSQREQK 209 (286)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCEE---EE--------------------------CCSSCC-------CCHHH
T ss_pred CCCCcEEEEeCcHHhHHHHHHHHHHcCCceE---Ee--------------------------eccccccccchhchHHHH
Confidence 3567999999999999999988865321100 00 011123347899999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+.+.|++|.++|||||+++++|+|+|+.++||. ||+ +|+...|+||+|||||.+ .|.+++++++..
T Consensus 210 ~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~----~d~---~~~~~~~~Qr~GR~gR~~---~~~~~~l~~~~~ 276 (286)
T d1wp9a2 210 LILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEP---VPSAIRSIQRRGRTGRHM---PGRVIILMAKGT 276 (286)
T ss_dssp HHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSC---CHHHHHHHHHHTTSCSCC---CSEEEEEEETTS
T ss_pred HHHHHHHcCCCcEEEEccceeccccCCCCCEEEE----eCC---CCCHHHHHHHHHhCCCCC---CCEEEEEEeCCC
Confidence 9999999999999999999999999999999997 664 356677999999999975 577887777654
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=2e-14 Score=157.63 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=85.9
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
|.++||||+|++.|+.++..|.+ .+||||++++|..+
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~-------------------------------------------~~hg~~~~~~R~~~ 61 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKN-------------------------------------------KFRIGIVTATKKGD 61 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTT-------------------------------------------SSCEEECTTSSSHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-------------------------------------------hccCCCCHHHHHHH
Confidence 67899999999999888876631 14999999999999
Q ss_pred HHHHhCCCccEEEec----cccccccCCCc-EEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 161 ERLFSEGLLKVLVCT----ATLAWGVNLPA-HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT----~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
++.|++|.++||||| +.+++|+|+|. +++||+ ||++. |.|++|||||.| ..|.+++++...+
T Consensus 62 ~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~----~d~P~-------~~~r~gR~~R~g--~~~~~~~~~~~~~ 128 (248)
T d1gkub2 62 YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VGCPS-------FRVTIEDIDSLS--PQMVKLLAYLYRN 128 (248)
T ss_dssp HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE----ESCCE-------EEEECSCGGGSC--HHHHHHHHTTTSC
T ss_pred HHHHHhCCCeEEEEeccccchhhhccCccccccEEEE----eCCCc-------chhhhhhhhccC--cceEeeeeccHhh
Confidence 999999999999999 67999999995 899996 77653 899999999999 6788888877766
Q ss_pred HHHHHH
Q 043190 236 LAYYLR 241 (1492)
Q Consensus 236 ~~~~~~ 241 (1492)
......
T Consensus 129 ~~~~~~ 134 (248)
T d1gkub2 129 VDEIER 134 (248)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 665544
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.34 E-value=2.5e-12 Score=130.84 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=139.1
Q ss_pred cHHHHHHHHhccCC-CCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcc---cceeecCCCCC----ChhHHHHHHHH
Q 043190 1185 SYVTVSMFGSNIGP-DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQR---VRFAVDNNRLD----DPHVKANLLFQ 1256 (1492)
Q Consensus 1185 ~~~T~~~f~~~l~~-~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~---~~~~~~~~~~~----~~~~K~~lLlq 1256 (1492)
+|.|+..|...+.. ..+.-.+|+++|.+++|..+.+|.+|......+... +.......... ...+|+.++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCcchHHHHHHcCCCCccccCcchhHHHHHHHHHHHHhhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 68899999887765 447778999999999999999999987655544322 21111111111 14589999999
Q ss_pred HHhcCCCCCC--cch---HhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHH
Q 043190 1257 AHFSRLDLPI--SDY---VTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNND 1331 (1492)
Q Consensus 1257 a~l~r~~l~~--~~l---~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~ 1331 (1492)
+|+++.++.. ..| .+|+++++++|.|+++++.++|...+|.. +=+|.++|..|+.++ ..+|+++||+|+.
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~e-ll~L~~i~gvgr~ 155 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEE-LLELVRIRHIGRV 155 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGG-GHHHHTSTTCCHH
T ss_pred HHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHccCCHH-HHhHhcCCCCCHH
Confidence 9999998762 223 89999999999999999999999988753 224899999999988 8999999999999
Q ss_pred HHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHh
Q 043190 1332 LLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDL 1371 (1492)
Q Consensus 1332 ~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~ 1371 (1492)
+++.|+++||+|+.||+.++++.+ ..+++..+..+.+.+
T Consensus 156 rAr~L~~~Gi~t~~dl~~a~~~~~-~~~~~g~g~ki~~~i 194 (198)
T d2p6ra2 156 RARKLYNAGIRNAEDIVRHREKVA-SLIGRGIAERVVEGI 194 (198)
T ss_dssp HHHHHHTTTCCSHHHHHHTHHHHH-HHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHccHhhH-HHHhcchHHHHHHHh
Confidence 999999999999999999875433 334444555555443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.33 E-value=1.4e-13 Score=146.54 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=82.7
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH--
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR-- 157 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R-- 157 (1492)
+++++||||+||++|+.+|..|.+. +..+..+|+||+++.|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~-------------------------------------Gi~a~~~Hgglsq~~R~~ 77 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVAL-------------------------------------GINAVAYYRGLDVSVIPT 77 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCGGGSCS
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHC-------------------------------------CCCEEEEeCCchHHHHHh
Confidence 4778999999999999999988753 2237789999999987
Q ss_pred --------HHHHHHHhCCCccEEEecccccc---ccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccce
Q 043190 158 --------GLTERLFSEGLLKVLVCTATLAW---GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 158 --------~~ve~~f~~g~i~vlvaT~tla~---Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
..+++.|++|+.+++|+|+++++ |+|++.+..||+ |+.. .+..+|+||+||+|| | ..|.
T Consensus 78 ~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~----~d~P---~SvesyIQRiGRTGR-G--r~G~ 147 (299)
T d1a1va2 78 SGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET----TTLP---QDAVSRTQRRGRTGR-G--KPGI 147 (299)
T ss_dssp SSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEE----EEEE---CBHHHHHHHHTTBCS-S--SCEE
T ss_pred ccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEEe----CCCC---CCHHHHHhhccccCC-C--CCce
Confidence 45778899999999999999999 678888888886 4422 245569999999999 7 5686
Q ss_pred EEEEe
Q 043190 227 GIIIT 231 (1492)
Q Consensus 227 ~i~~~ 231 (1492)
...+.
T Consensus 148 ~~~l~ 152 (299)
T d1a1va2 148 YRFVA 152 (299)
T ss_dssp EEESC
T ss_pred EEEEe
Confidence 66554
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.33 E-value=5.7e-13 Score=141.90 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=85.9
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH------
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR------ 990 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R------ 990 (1492)
++++||||+|++.|+.++..|.+ .+..+..+|++++.+.|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~----------------------------------~Gi~a~~~Hgglsq~~R~~~gd~ 81 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVA----------------------------------LGINAVAYYRGLDVSVIPTSGDV 81 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCGGGSCSSSSE
T ss_pred CCCEEEECCcHHHHHHHHHHHHH----------------------------------CCCCEEEEeCCchHHHHHhccch
Confidence 67899999999999999988843 26778899999999876
Q ss_pred ----HHHHHHHhcCCceEEEecccccc---ccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 991 ----SLVEELFANNKIQVLVCTSTLAW---GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 991 ----~~v~~~f~~g~~~vLvaT~~l~~---Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
..+++.|..|+.+++|+|+++++ |+|++.+.+||+ |+ .+.++.+|+||+||+|| | +.|..
T Consensus 82 ~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~----~d------~P~SvesyIQRiGRTGR-G--r~G~~ 148 (299)
T d1a1va2 82 VVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET----TT------LPQDAVSRTQRRGRTGR-G--KPGIY 148 (299)
T ss_dssp EEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEE----EE------EECBHHHHHHHHTTBCS-S--SCEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEEe----CC------CCCCHHHHHhhccccCC-C--CCceE
Confidence 46788899999999999999998 678888888997 44 44579999999999999 6 78877
Q ss_pred EEEec
Q 043190 1064 VILVH 1068 (1492)
Q Consensus 1064 i~l~~ 1068 (1492)
..+..
T Consensus 149 ~~l~~ 153 (299)
T d1a1va2 149 RFVAP 153 (299)
T ss_dssp EESCS
T ss_pred EEEec
Confidence 65543
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.31 E-value=8.1e-13 Score=139.61 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=88.6
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
....++.++||||++...++.++..| ++..+||+++..+|.
T Consensus 88 l~~~~~~k~lvf~~~~~~~~~l~~~l---------------------------------------~~~~i~g~~~~~~R~ 128 (200)
T d2fwra1 88 LERHRKDKIIIFTRHNELVYRISKVF---------------------------------------LIPAITHRTSREERE 128 (200)
T ss_dssp HHHTSSSCBCCBCSCHHHHHHHHHHT---------------------------------------TCCBCCSSSCSHHHH
T ss_pred HHhCCCCcEEEEeCcHHHHHHHHhhc---------------------------------------CcceeeCCCCHHHHH
Confidence 33456789999999998887765433 345689999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC-ceEEEEEecC
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ-HGKAVILVHE 1069 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~-~G~~i~l~~~ 1069 (1492)
.+++.|++|+++|||||+++++|+|+|.+++||. |+++ .+..+++||+||++|.|.++ .+..+.|+.+
T Consensus 129 ~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~----~~~~------~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 129 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSGS------GSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp THHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECCS------SCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred HHHHHhhcCCeeeeeecchhhcccCCCCCCEEEE----eCCC------CCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999999999986 5533 36789999999999998653 3555556554
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.28 E-value=2.5e-12 Score=146.60 Aligned_cols=112 Identities=19% Similarity=0.055 Sum_probs=84.1
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||+++++++.+++.|.+.. ..+...||++++..|.
T Consensus 176 ~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~l~~~~~~~~~~ 218 (305)
T d2bmfa2 176 DFKGKTVWFVPSIKAGNDIAACLRKNG-------------------------------------KKVIQLSRKTFDSEYI 218 (305)
T ss_dssp SSCSCEEEECSCHHHHHHHHHHHHHHT-------------------------------------CCCEECCTTCHHHHGG
T ss_pred hhCCCEEEEeccHHHHHHHHHHHHhCC-------------------------------------CCEEEeCCcChHHHHh
Confidence 467899999999999999999887542 2266779998766554
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccc-----eecCCCC-------CcccCchhhhhhccCCCCCCccce
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQ-----LYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~-----~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
.|++|..+++|||+++++|+|+++..||..|.. .|++..+ +.+..+|.||+|||||.| ..|.
T Consensus 219 ----~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~--~~~~ 292 (305)
T d2bmfa2 219 ----KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP--KNEN 292 (305)
T ss_dssp ----GGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS--SCCC
T ss_pred ----hhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCC--CCce
Confidence 689999999999999999999998887754432 2444322 123446899999999999 5566
Q ss_pred EEEEeCC
Q 043190 227 GIIITSH 233 (1492)
Q Consensus 227 ~i~~~~~ 233 (1492)
+++++..
T Consensus 293 ~~~~~~~ 299 (305)
T d2bmfa2 293 DQYIYMG 299 (305)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 6655543
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.27 E-value=6.7e-13 Score=140.25 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=83.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||++...++.+++.+ ++..+||++++++|..
T Consensus 92 ~~~k~lvf~~~~~~~~~l~~~l------------------------------------------~~~~i~g~~~~~~R~~ 129 (200)
T d2fwra1 92 RKDKIIIFTRHNELVYRISKVF------------------------------------------LIPAITHRTSREEREE 129 (200)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHT------------------------------------------TCCBCCSSSCSHHHHT
T ss_pred CCCcEEEEeCcHHHHHHHHhhc------------------------------------------CcceeeCCCCHHHHHH
Confidence 4678999999998887766433 2456799999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCc-cceEEEEe
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDR-SGEGIIIT 231 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~-~G~~i~~~ 231 (1492)
+++.|++|.++|||||++++.|+|+|..++||. |++ +|+...++||+||+||.|.+. .+..+-++
T Consensus 130 ~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~----~~~---~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v 195 (200)
T d2fwra1 130 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSG---SGSAREYIQRLGRILRPSKGKKEAVLYELI 195 (200)
T ss_dssp HHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECC---SSCCHHHHHHHHHSBCCCTTTCCEEEEEEE
T ss_pred HHHHhhcCCeeeeeecchhhcccCCCCCCEEEE----eCC---CCCHHHHHHHHHhcCCCCCCCcEEEEEEEe
Confidence 999999999999999999999999998888884 554 356677999999999998643 23444344
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=1.1e-13 Score=151.60 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++++||||+|++.++.++..|.. .+||++++.+|..+++.
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~----------------------------------------~~hg~~~~~~R~~~~~~ 64 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKN----------------------------------------KFRIGIVTATKKGDYEK 64 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTT----------------------------------------SSCEEECTTSSSHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----------------------------------------hccCCCCHHHHHHHHHH
Confidence 46799999999999988866511 26999999999999999
Q ss_pred HhcCCceEEEec----cccccccCCCC-cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 997 FANNKIQVLVCT----STLAWGVNLPA-HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 997 f~~g~~~vLvaT----~~l~~Gvdip~-~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|++|+++||||| +++++|+|+|+ +++||+ || +| .|.||+||+||.| ..|.+++++...+
T Consensus 65 f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~----~d--------~P--~~~~r~gR~~R~g--~~~~~~~~~~~~~ 128 (248)
T d1gkub2 65 FVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VG--------CP--SFRVTIEDIDSLS--PQMVKLLAYLYRN 128 (248)
T ss_dssp HHHTSCSEEEEECC------CCSCCTTTCCEEEE----ES--------CC--EEEEECSCGGGSC--HHHHHHHHTTTSC
T ss_pred HHhCCCeEEEEeccccchhhhccCccccccEEEE----eC--------CC--cchhhhhhhhccC--cceEeeeeccHhh
Confidence 999999999999 67999999996 999998 54 34 3779999999988 7888877777666
Q ss_pred HHHHHHhh
Q 043190 1072 KSFYKKFL 1079 (1492)
Q Consensus 1072 ~~~~~~~l 1079 (1492)
......+.
T Consensus 129 ~~~~~~l~ 136 (248)
T d1gkub2 129 VDEIERLL 136 (248)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 55554443
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.09 E-value=1.2e-10 Score=127.71 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=81.4
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
+++++|||++..++..++..|.+ .++.|..+||.+...++. .
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~----------------------------------~g~~V~~l~~~~~~~e~~----~ 77 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRK----------------------------------AGKSVVVLNRKTFEREYP----T 77 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----------------------------------TTCCEEECCSSSCC---------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----------------------------------cCCeEEEEcCcCcHhHHh----h
Confidence 67899999999999999988843 256799999999988765 4
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecc-----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGT-----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~-----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
|++|+.+|||||+++++|+|++ +.+||... ..|++..+ ...+++.++..||.||+||.+ ....++.++
T Consensus 78 ~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~--~~~~~~~~y 154 (299)
T d1yksa2 78 IKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP--NRDGDSYYY 154 (299)
T ss_dssp ---CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT--TCCCEEEEE
T ss_pred hhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC--CCceEEEEe
Confidence 6889999999999999999995 88888643 24766543 235678999999999999975 333344444
Q ss_pred c
Q 043190 1068 H 1068 (1492)
Q Consensus 1068 ~ 1068 (1492)
.
T Consensus 155 ~ 155 (299)
T d1yksa2 155 S 155 (299)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.98 E-value=2.4e-10 Score=125.28 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=77.2
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..+++++|||+|.+++..+|..|.+. .+.|...||.+..+++.
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~-------------------------------------g~~V~~l~~~~~~~e~~ 76 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKA-------------------------------------GKSVVVLNRKTFEREYP 76 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEECCSSSCC----
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCeEEEEcCcCcHhHHh
Confidence 34788999999999999999988753 22388899999988866
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCC-------CcccCchhhhhhccCCCCCCccceE
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
.|++|+.++||||+++++|+|++...||-.|. ..||+..+ +.+..+..||.|||||.+ ....+
T Consensus 77 ----~~~~~~~~~~~~t~~~~~~~~~~~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~--~~~~~ 150 (299)
T d1yksa2 77 ----TIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP--NRDGD 150 (299)
T ss_dssp --------CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT--TCCCE
T ss_pred ----hhhcCCcCEEEEechhhhceecCceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC--CCceE
Confidence 47899999999999999999997555553343 34777543 134455688999999975 33445
Q ss_pred EEEeC
Q 043190 228 IIITS 232 (1492)
Q Consensus 228 i~~~~ 232 (1492)
+.++.
T Consensus 151 ~~~y~ 155 (299)
T d1yksa2 151 SYYYS 155 (299)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 55544
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.75 E-value=2.3e-08 Score=107.43 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+|+|+|.+++.-+. ..+..+|++-++|.|||..++..+.......+..++++++|. .+..|..+++.+... ..
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~-~l~~~W~~e~~~~~~---~~ 87 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAP---HL 87 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT---TS
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecch-hhhhHHHHHHHhhcc---cc
Confidence 58999999987543 345678999999999999987666555555556789999995 555665555544221 23
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.+....+.. ......+.+|+++|++.+.....- .--..+++|+||+|.+..........+ .. . .
T Consensus 88 ~~~~~~~~~--~~~~~~~~~vvi~~~~~~~~~~~l-----~~~~~~~vI~DEah~~k~~~s~~~~~~-~~-------l-~ 151 (230)
T d1z63a1 88 RFAVFHEDR--SKIKLEDYDIILTTYAVLLRDTRL-----KEVEWKYIVIDEAQNIKNPQTKIFKAV-KE-------L-K 151 (230)
T ss_dssp CEEECSSST--TSCCGGGSSEEEEEHHHHTTCHHH-----HTCCEEEEEEETGGGGSCTTSHHHHHH-HT-------S-C
T ss_pred cceeecccc--chhhccCcCEEEeeHHHHHhHHHH-----hcccceEEEEEhhhcccccchhhhhhh-hh-------h-c
Confidence 444333222 222334679999999865322111 112567899999999865433222222 11 1 2
Q ss_pred ceEEEEEcCCCCC--hHHHHH
Q 043190 845 AVRFIGLSTALAN--AGDLAD 863 (1492)
Q Consensus 845 ~~~ii~lSATl~~--~~~~~~ 863 (1492)
....+++|||+-+ ..++..
T Consensus 152 a~~r~~LTgTPi~n~~~dl~~ 172 (230)
T d1z63a1 152 SKYRIALTGTPIENKVDDLWS 172 (230)
T ss_dssp EEEEEEECSSCSTTCHHHHHH
T ss_pred cceEEEEecchHHhHHHHHHH
Confidence 3456899999753 455433
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.69 E-value=6e-08 Score=108.49 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHhhh--------cCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILY--------HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~--------~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
.++|+|.+++.-++ ..+..+|++-..|.|||++++..+...+... ...++||++|. .|+.|-.+++
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccc-hhhHHHHHHH
Confidence 58999999987542 2456799999999999997665444444332 13469999997 4677766666
Q ss_pred HHHhhhccCCEEEEEcCCCCcchh-----------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLM-----------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~-----------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
.+.+.. ...+..++|+...... .....+++++|++.+....... .-.+.++||+||+|.+...
T Consensus 134 ~k~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l----~~~~~~~vI~DEaH~ikn~ 207 (298)
T d1z3ix2 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL----HKGKVGLVICDEGHRLKNS 207 (298)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT----TTSCCCEEEETTGGGCCTT
T ss_pred HhhcCC--ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcc----cccceeeeecccccccccc
Confidence 654433 2345555554322110 1224689999998764332221 1235689999999998543
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
....... +..+ ...+.++||||+-
T Consensus 208 ~s~~~~a-~~~l--------~~~~rllLTGTPi 231 (298)
T d1z3ix2 208 DNQTYLA-LNSM--------NAQRRVLISGTPI 231 (298)
T ss_dssp CHHHHHH-HHHH--------CCSEEEEECSSCS
T ss_pred cchhhhh-hhcc--------ccceeeeecchHH
Confidence 3322222 2222 1345689999974
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.46 E-value=3.8e-07 Score=98.39 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=75.9
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+...+|.++||||+.+.....+...+.+.. ...++..||++
T Consensus 77 ~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~i~G~~ 120 (244)
T d1z5za1 77 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGEL 120 (244)
T ss_dssp HHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH------------------------------------CSCCCEECTTS
T ss_pred HHHhhcccccceEEEeeceehHHHHHHHHHhhc------------------------------------cceEEEEeccc
Confidence 334444678899999999998876655554321 22366789999
Q ss_pred ChhhHHHHHHHHhCC-CccEEEe-ccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEE
Q 043190 153 LRSDRGLTERLFSEG-LLKVLVC-TATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g-~i~vlva-T~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
+.++|..+.+.|.++ ..+|+++ |.+.+.|+|+++.+.||. |++ .|+...+.|+.||+-|.|....-.++.+
T Consensus 121 ~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~----~~~---~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l 193 (244)
T d1z5za1 121 SKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR---WWNPAVEDQATDRVYRIGQTRNVIVHKL 193 (244)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC---CSCTTTC--------------CCEEEEE
T ss_pred chhccchhhhhhhccccchhccccccccccccccchhhhhhh----cCc---hhhhHHHhhhcceeeecCCCCceEEEEE
Confidence 999999999999876 4677755 478899999987666664 443 3555668999999999996666666666
Q ss_pred eCCccH
Q 043190 231 TSHDKL 236 (1492)
Q Consensus 231 ~~~~~~ 236 (1492)
...+..
T Consensus 194 ~~~~Ti 199 (244)
T d1z5za1 194 ISVGTL 199 (244)
T ss_dssp EETTSH
T ss_pred eeCCCH
Confidence 555543
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.45 E-value=6.6e-07 Score=100.70 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=91.6
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
.++.++|||++.......+...|.. .+..+..++|+++..+|..+.
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~----------------------------------~g~~~~~l~G~~~~~~R~~~i 161 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRN----------------------------------RRYLYVRLDGTMSIKKRAKIV 161 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHH----------------------------------HTCCEEEECSSCCHHHHHHHH
T ss_pred hcCCceeEEeehhhhhHHHHHHHhh----------------------------------hhccccccccchhHHHHHHHH
Confidence 4567999999999877666554422 256788999999999999999
Q ss_pred HHHhcCCce---EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANNKIQ---VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g~~~---vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|+++... +|++|.+.+.|+|++..+.||. || .+++++...|++||+.|.|..+.-.+|.++....
T Consensus 162 ~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~----~d------~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~T 231 (346)
T d1z3ix1 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FD------PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 231 (346)
T ss_dssp HHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CS------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred HhhhcccccceeeeecchhhhhccccccceEEEE----ec------CCCccchHhHhhhcccccCCCCceEEEEEEeCCC
Confidence 999987543 6788899999999999999997 44 2346899999999999999877777777777654
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.38 E-value=2.4e-07 Score=90.62 Aligned_cols=111 Identities=18% Similarity=0.177 Sum_probs=79.3
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
.+..+.|+||++.|.+.++.++..|.+. +....++++....++-..
T Consensus 30 ~~~~grPVLIgT~SIe~SE~ls~~L~~~----------------------------------gi~h~vLnAk~~~~Ea~I 75 (175)
T d1tf5a4 30 RYMTGQPVLVGTVAVETSELISKLLKNK----------------------------------GIPHQVLNAKNHEREAQI 75 (175)
T ss_dssp HHHHTCCEEEEESCHHHHHHHHHHHHTT----------------------------------TCCCEEECSSCHHHHHHH
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHc----------------------------------CCCceeehhhhHHHHHHH
Confidence 3466899999999999999998877432 344567787765555544
Q ss_pred HHHHHhcCCceEEEeccccccccCCCC--------cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPA--------HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~--------~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
+-++-..| .|.|||++++||.|+.- -.+||. |.+. -+..--.|..||+||.| .+|.+.
T Consensus 76 I~~Ag~~g--~VtIATNmAGRGtDikl~~~v~~~GGLhVI~-t~~~---------~s~Rid~Ql~GR~gRQG--dpGs~~ 141 (175)
T d1tf5a4 76 IEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG-TERH---------ESRRIDNQLRGRSGRQG--DPGITQ 141 (175)
T ss_dssp HTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE-SSCC---------SSHHHHHHHHTTSSGGG--CCEEEE
T ss_pred HHhccCCC--ceeehhhHHHcCCCccchHHHHhCCCcEEEE-eccC---------cchhHHHHHhcchhhhC--CCcccE
Confidence 44444444 69999999999999862 245663 3222 24566789999999988 889888
Q ss_pred EEecCCc
Q 043190 1065 ILVHEPK 1071 (1492)
Q Consensus 1065 ~l~~~~~ 1071 (1492)
.+++-++
T Consensus 142 ~~~sleD 148 (175)
T d1tf5a4 142 FYLSMED 148 (175)
T ss_dssp EEEETTS
T ss_pred EEEEcCH
Confidence 8875443
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.35 E-value=4.9e-07 Score=97.49 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
.++.++||||+.+.....+...+.. ..+..+..+||+++..+|..+.
T Consensus 83 ~~g~kviIFs~~~~~~~~l~~~l~~---------------------------------~~~~~~~~i~G~~~~~~R~~~i 129 (244)
T d1z5za1 83 DEGDKIAIFTQFVDMGKIIRNIIEK---------------------------------ELNTEVPFLYGELSKKERDDII 129 (244)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHH---------------------------------HHCSCCCEECTTSCHHHHHHHH
T ss_pred ccccceEEEeeceehHHHHHHHHHh---------------------------------hccceEEEEecccchhccchhh
Confidence 4578999999999887666544422 2356678899999999999999
Q ss_pred HHHhcC-CceEEE-eccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANN-KIQVLV-CTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g-~~~vLv-aT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|.++ ..++++ +|.+.+.|+|++..+.||. |++ ++++..+.|+.||+.|.|..++..++.++..+.
T Consensus 130 ~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~----~~~------~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~T 198 (244)
T d1z5za1 130 SKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 198 (244)
T ss_dssp HHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC------CSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhccccchhccccccccccccccchhhhhhh----cCc------hhhhHHHhhhcceeeecCCCCceEEEEEeeCCC
Confidence 999876 456665 5578899999999998886 432 234667899999999999877778887766653
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.25 E-value=3.4e-06 Score=94.72 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..+.++|||++.+.....+.+.|... +......||+++..+|.
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~~-------------------------------------g~~~~~l~G~~~~~~R~ 158 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRNR-------------------------------------RYLYVRLDGTMSIKKRA 158 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH-------------------------------------TCCEEEECSSCCHHHHH
T ss_pred hcCCceeEEeehhhhhHHHHHHHhhh-------------------------------------hccccccccchhHHHHH
Confidence 45789999999998776666555432 22366789999999999
Q ss_pred HHHHHHhCCCcc---EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEGLLK---VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g~i~---vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+.+.|.++... +|++|.+.+.|+||+..+.||. ||+ .|......|.+||+-|.|....-.++.+.....
T Consensus 159 ~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~----~d~---~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~T 231 (346)
T d1z3ix1 159 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FDP---DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 231 (346)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CSC---CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred HHHHhhhcccccceeeeecchhhhhccccccceEEEE----ecC---CCccchHhHhhhcccccCCCCceEEEEEEeCCC
Confidence 999999987543 6789999999999988777774 654 366667999999999999665555666655544
Q ss_pred H
Q 043190 236 L 236 (1492)
Q Consensus 236 ~ 236 (1492)
.
T Consensus 232 i 232 (346)
T d1z3ix1 232 I 232 (346)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=1e-05 Score=84.07 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|...--.+. .| -|....||-|||+++.+|+.-.... +..+-+++..--||..=++.+.. +-+.+|+
T Consensus 78 G~R-hyDVQLiGgi~L~-~G--~iaem~TGEGKTL~a~l~a~l~al~--g~~vhvvTvNdyLA~RDae~m~~-iy~~lGl 150 (273)
T d1tf5a3 78 GMF-PFKVQLMGGVALH-DG--NIAEMKTGEGKTLTSTLPVYLNALT--GKGVHVVTVNEYLASRDAEQMGK-IFEFLGL 150 (273)
T ss_dssp SCC-CCHHHHHHHHHHH-TT--SEEECCTTSCHHHHHHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred ceE-EehhHHHHHHHHH-hh--hheeecCCCcchhHHHHHHHHHHhc--CCCceEEecCccccchhhhHHhH-HHHHcCC
Confidence 554 7777777666654 44 3889999999999999987765543 67888888888999876766655 4455599
Q ss_pred EEEEEcCCCCcchhc-cCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLMA-LLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~-~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++...+.....+. .-.+||+++|...+ +.+-.+.. .....+.+.+.||||+|.+
T Consensus 151 svg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsi 212 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 212 (273)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred CccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhh
Confidence 999998876654332 33789999999885 44333322 2334567899999999943
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=8.7e-06 Score=73.88 Aligned_cols=99 Identities=21% Similarity=0.385 Sum_probs=70.6
Q ss_pred eeEEEEEee----cccceEEEEEEEecC-----CcccCCcC-CcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEE
Q 043190 546 IQLSATVSP----ITRTVLKIGLAITPE-----FTWKDHFH-GAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKL 615 (1492)
Q Consensus 546 ~~i~~~~~~----~~~~~~~i~~~~~~~-----f~~~~~~h-~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v 615 (1492)
+++++++.. ..++.+++.|+++.+ ..+.++++ .+.|+||++++|..+++++..++++++++. ...+
T Consensus 2 i~~~~~v~d~~~v~~g~~~~l~V~l~R~~~~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~~----~~~l 77 (114)
T d2q0zx2 2 IELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKA----KVKL 77 (114)
T ss_dssp EEEEEEETTGGGCBTTSEEEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEE----EEEE
T ss_pred ceEEEEEcCCcceecCCeEEEEEEEEEcCCcCCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEeccccce----EEEE
Confidence 456666542 234566666666532 44566666 468999999999999999999998876542 3456
Q ss_pred EEEeeccCCCCCcceeeeccCcccccceeEEeccc
Q 043190 616 SFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFH 650 (1492)
Q Consensus 616 ~~~ip~~~p~p~~~~v~~~Sd~wl~~~~~~~i~~~ 650 (1492)
.|..|. +....+.+.++||+|+|.+....+.++
T Consensus 78 ~f~~p~--~G~~~~~l~~~sDsY~G~D~~~~~~~~ 110 (114)
T d2q0zx2 78 DFVAPA--TGAHNYTLYFMSDAYMGCDQEYKFSVD 110 (114)
T ss_dssp EEECCS--SEEEEEEEEEEESSCSSCCEEEEEEEE
T ss_pred EEeCCC--CCeEEEEEEEEcccccccceEEEEEEE
Confidence 666552 344478899999999999998888764
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.96 E-value=3.9e-06 Score=81.84 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
+.+.+....+.|+|||+.|.+..+.+++.|.+.... .-+.+|.
T Consensus 25 ~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~-------------------------------------h~vLnAk 67 (175)
T d1tf5a4 25 EDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIP-------------------------------------HQVLNAK 67 (175)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCC-------------------------------------CEEECSS
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-------------------------------------ceeehhh
Confidence 344445577999999999999999998888643111 2345666
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCC---------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLP---------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp---------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
....+-..|-++-..| .|.|||+.+.||.|+. ...||. |.+.+. ..--.|..|||||-|
T Consensus 68 ~~~~Ea~II~~Ag~~g--~VtIATNmAGRGtDikl~~~v~~~GGLhVI~--t~~~~s------~Rid~Ql~GR~gRQG-- 135 (175)
T d1tf5a4 68 NHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--TERHES------RRIDNQLRGRSGRQG-- 135 (175)
T ss_dssp CHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--SSCCSS------HHHHHHHHTTSSGGG--
T ss_pred hHHHHHHHHHhccCCC--ceeehhhHHHcCCCccchHHHHhCCCcEEEE--eccCcc------hhHHHHHhcchhhhC--
Confidence 5444444444333333 6999999999999873 333333 222211 111467899999988
Q ss_pred ccceEEEEeCCcc
Q 043190 223 RSGEGIIITSHDK 235 (1492)
Q Consensus 223 ~~G~~i~~~~~~~ 235 (1492)
..|.+..+++-++
T Consensus 136 dpGs~~~~~sleD 148 (175)
T d1tf5a4 136 DPGITQFYLSMED 148 (175)
T ss_dssp CCEEEEEEEETTS
T ss_pred CCcccEEEEEcCH
Confidence 6788887776443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.00011 Score=82.56 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=56.3
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHH--HHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAEL--AMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l--~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+...|.-....+.|.+|+..++ +++.++|.||.|+|||+.... ..+......++.++++++||-.-|....+.....
T Consensus 140 ~~~~~~~~~~~~~Q~~A~~~al-~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 140 LDKLFPVSDEINWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp HHTTCCCTTSCCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred HHHhccCcccccHHHHHHHHHH-cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHH
Confidence 3444544557889999999988 678999999999999987533 2233333345779999999998887766655443
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=7e-05 Score=73.91 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=78.5
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
..+..+.|+||.+.|....+.++..|.+. +....++++.-...+-.
T Consensus 29 ~~h~~GqPVLVGT~SVe~SE~lS~lL~~~----------------------------------gi~h~vLNAK~herEAe 74 (219)
T d1nkta4 29 ERYAKGQPVLIGTTSVERSEYLSRQFTKR----------------------------------RIPHNVLNAKYHEQEAT 74 (219)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHHHHHHHT----------------------------------TCCCEEECSSCHHHHHH
T ss_pred HHHhcCCCEEEeeCcHHHHHHHHHHHHHh----------------------------------ccchhccchhhHHHHHH
Confidence 34577899999999999999998777442 44556777775554544
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCC----------------------------------------------------
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPA---------------------------------------------------- 1019 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~---------------------------------------------------- 1019 (1492)
.|-++=+.| .|-|||++++||.||.-
T Consensus 75 IIAqAG~~G--aVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 152 (219)
T d1nkta4 75 IIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAG 152 (219)
T ss_dssp HHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHhcccCC--cEEeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444443333 69999999999999932
Q ss_pred cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1020 HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1020 ~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
-.+|| ||.+.++. --=.|-.||+||.| ++|.+-.|.+-++
T Consensus 153 GL~VI-GTErHeSr---------RIDnQLRGRsGRQG--DPGsSrFflSLeD 192 (219)
T d1nkta4 153 GLYVL-GTERHESR---------RIDNQLRGRSGRQG--DPGESRFYLSLGD 192 (219)
T ss_dssp SEEEE-ECSCCSSH---------HHHHHHHHTSSGGG--CCEEEEEEEETTS
T ss_pred CcEEE-eccccccc---------cccccccccccccC--CCccceeEEeccH
Confidence 13444 55544422 22269999999988 8999888876554
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.92 E-value=0.00048 Score=76.33 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+|+|-|.+++.. .+.+++|.|+.|||||.+.+.-+...+.. .+..+++++++++++|.++..++.+.
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~ 69 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 69 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHh
Confidence 489999999975 34679999999999999876555444432 23468999999999999877776554
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.87 E-value=0.00035 Score=55.12 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=46.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1322 LWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1322 L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
|.++||||+.++++|.++|+.|+.+|+.++.+++.++ +++...++|.+.++.+
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~ 55 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDL 55 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999887 6677778887776653
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.78 E-value=0.00046 Score=54.38 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=47.8
Q ss_pred cccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 490 LRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 490 L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
|.++| +||+..+++|.++|+ |++++.++++++|.++-+ ++..+++|.+.++.+
T Consensus 1 L~~Ip-GIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~ 55 (60)
T d2i1qa1 1 LTDLP-GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDL 55 (60)
T ss_dssp CTTST-TCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCC-CCCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56899 999999999999999 999999999999999877 788899998887754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.58 E-value=0.0018 Score=72.00 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.|++-|.+++... +..++|.|+.|||||++.+--+.+.+... +..+++++++++.++.++..++....
T Consensus 11 ~L~~eQ~~~v~~~---~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRTT---EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHCC---SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC---CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 4899999999853 45799999999999998877666655432 33689999999999999888876654
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.52 E-value=0.0011 Score=52.51 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=46.1
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
.|..+||||+.++++|.++|+.|+.+|+.++++++.++ +++...+.|.+.++.+
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~ 57 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 57 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999887 5666677777766543
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.42 E-value=0.0014 Score=51.72 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=48.7
Q ss_pred ccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 489 PLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
.|..+| +||+..+++|.++|+ |+++++++++++|.++-+ ++..+++|.+.++.+
T Consensus 2 ~L~~i~-GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~ 57 (61)
T d1pzna1 2 SIEDLP-GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 57 (61)
T ss_dssp CSSCCT-TCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 477899 999999999999998 999999999999999988 788899998887654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.37 E-value=0.0059 Score=61.89 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=68.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
+.+.++++||||+|||+...-.......+ +.++.+++- .|.-|.++.+.+.+.+ |+.+....
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l----~v~~~~~~---------- 72 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKV----GVPVLEVM---------- 72 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHH----TCCEEECC----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEecccccchHHHHHHHHHHhc----CCcccccc----------
Confidence 33446779999999988765544433332 455655554 6788888888777655 55444322
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+++.+....+.......+.+.++|+||=+-+. +.-...+..+..+....++...++.++|+.+.
T Consensus 73 --------~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~-----~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~ 136 (207)
T d1ls1a2 73 --------DGESPESIRRRVEEKARLEARDLILVDTAGRL-----QIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 136 (207)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCS-----SCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred --------ccchhhHHHHHHHHHHhhccCcceeecccccc-----hhhhhhHHHHHHHHhhcCCceEEEEeccccch
Confidence 22222222111001111446678888877643 22223334444443334456667788888754
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.19 E-value=0.0052 Score=60.39 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
+.+.+....|.|+||.+.|-...+.++..|.+.... -.+.+|.
T Consensus 25 ~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~-------------------------------------h~vLNAK 67 (219)
T d1nkta4 25 DDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP-------------------------------------HNVLNAK 67 (219)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC-------------------------------------CEEECSS
T ss_pred HHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccc-------------------------------------hhccchh
Confidence 344445578999999999999999998887654211 2233443
Q ss_pred CChhhHHHHHHHHhCCCc-cEEEeccccccccCC
Q 043190 152 MLRSDRGLTERLFSEGLL-KVLVCTATLAWGVNL 184 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i-~vlvaT~tla~Gvnl 184 (1492)
-...+-..| -..|.. .|-|||+.+.||.|+
T Consensus 68 ~herEAeII---AqAG~~GaVTIATNMAGRGTDI 98 (219)
T d1nkta4 68 YHEQEATII---AVAGRRGGVTVATNMAGRGTDI 98 (219)
T ss_dssp CHHHHHHHH---HTTTSTTCEEEEETTCSTTCCC
T ss_pred hHHHHHHHH---HhcccCCcEEeeccccCCCCce
Confidence 212222222 234443 688999999999998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0089 Score=60.43 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=66.7
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc-cc-HHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA-PL-KAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~-P~-r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
.++++||||+|||+...-...+ +... +.++.+++ -+ |.-|.++.+.|.+.+ |+.+....
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~-~~~~-g~kV~lit~Dt~R~gA~eQL~~~a~~l----~v~~~~~~------------- 71 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQ-FEQQ-GKSVMLAAGDTFRAAAVEQLQVWGQRN----NIPVIAQH------------- 71 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HHTT-TCCEEEECCCTTCHHHHHHHHHHHHHT----TCCEECCS-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHC-CCcEEEEecccccccchhhhhhhhhhc----CCcccccc-------------
Confidence 4677999999999876655443 3332 44554444 33 677777777776654 55543222
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc------CCceEEEEEcCCCCC
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT------ERAVRFIGLSTALAN 857 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~------~~~~~ii~lSATl~~ 857 (1492)
+++.+...+++.......++.++|+||=+= |.+.-...+..++.+.... .+.-.++.++|+...
T Consensus 72 -----~~~d~~~~l~~~~~~a~~~~~d~ilIDTaG-----r~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~ 141 (211)
T d2qy9a2 72 -----TGADSASVIFDAIQAAKARNIDVLIADTAG-----RLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 141 (211)
T ss_dssp -----TTCCHHHHHHHHHHHHHHTTCSEEEECCCC-----CGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH
T ss_pred -----cCCCHHHHHHHHHHHHHHcCCCEEEeccCC-----CccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc
Confidence 222233333322111123467889998875 3333333444443332211 134566778888754
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0035 Score=49.72 Aligned_cols=52 Identities=10% Similarity=0.237 Sum_probs=47.1
Q ss_pred ccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhc
Q 043190 489 PLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLG 541 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~ 541 (1492)
.|.++| +||+..+++|.++--|++++.+++.+||.++.|++..++.|+++++
T Consensus 4 ~L~~iP-GIg~~~~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~ 55 (62)
T d2a1ja1 4 FLLKMP-GVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 55 (62)
T ss_dssp HHHTST-TCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhcCC-CCCHHHHHHHHHHhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHh
Confidence 478999 9999999999876559999999999999999986678999999987
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.013 Score=59.48 Aligned_cols=125 Identities=13% Similarity=0.213 Sum_probs=65.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc-cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP-LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P-~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
..++++||||+|||+...-...+.. ..+..-.++.+- .|.=|.++.+.+.+.+ |+.+.....
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l----~i~~~~~~~------------ 74 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERV----GATVISHSE------------ 74 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHH----TCEEECCST------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhc----CccccccCC------------
Confidence 4678899999999987655444433 322333444444 5677777777776654 555432211
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC------CceEEEEEcCCCCC
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE------RAVRFIGLSTALAN 857 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~------~~~~ii~lSATl~~ 857 (1492)
++.+....+........++.++|+||=+=+. +.-...+..++.+..... +.-.++.++||...
T Consensus 75 ------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~-----~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~ 143 (213)
T d1vmaa2 75 ------GADPAAVAFDAVAHALARNKDVVIIDTAGRL-----HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ 143 (213)
T ss_dssp ------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCC-----SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH
T ss_pred ------CCcHHHHHHHHHHHHHHcCCCEEEEeccccc-----cchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc
Confidence 1111122221111122456788999887533 222233333333222111 34467888888643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.96 E-value=0.0098 Score=60.09 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=35.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc-c-cHHHHHHHHHHHHHHh
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA-P-LKAIVRERMNDWKDRL 758 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~-P-~r~La~q~~~~~~~~~ 758 (1492)
.++.++++||||+|||+...-..... ... +.++.+++ - .|.-|.++.+.|.+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~-~~~-g~kV~lit~Dt~R~gA~eQL~~~a~~l 60 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNL-GKKVMFCAGDTFRAAGGTQLSEWGKRL 60 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH-HTT-TCCEEEECCCCSSTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-HHC-CCcEEEEEeccccccchhhHhhccccc
Confidence 35678889999999998766544333 332 45555444 3 4777878788777655
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.019 Score=58.44 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhhh---cCC---CcEEEecCCCCCchHHHHHHHHH
Q 043190 689 FNPIQTQIFHILY---HTD---NNVLLGAPTGSGKTISAELAMLH 727 (1492)
Q Consensus 689 l~~~Q~~~i~~~~---~~~---~~vli~apTGsGKT~~~~l~il~ 727 (1492)
++|+|..++..+. .++ ..+++.||.|+|||..+...+-.
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHh
Confidence 6789888877653 233 24899999999999987654443
|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0034 Score=49.73 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=44.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1322 LWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1322 L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
.++.+|+++..+++|+++|+.|+++|+.++.+++.++ +++...+.|.+.+++
T Consensus 5 ~L~~~Gig~~~~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k 58 (64)
T d1szpa1 5 KLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58 (64)
T ss_dssp GGCCTTCCHHHHHHHHTTSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHhHCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999886 566677777776654
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0045 Score=47.70 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=46.5
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
|.|.++||+|+.++++|.++ +.|++++.+++.+++.++ +++...+.|.+++.
T Consensus 2 S~L~~I~gVG~~~a~~L~~~-F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56)
T d1kfta_ 2 SSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56)
T ss_dssp CGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred CCcccCCCccHHHHHHHHHH-hCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHc
Confidence 56889999999999999876 779999999999999988 78888899988875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.33 E-value=0.029 Score=56.57 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=28.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE-cc-cHHHHHHHHHHHHHHh
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI-AP-LKAIVRERMNDWKDRL 758 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i-~P-~r~La~q~~~~~~~~~ 758 (1492)
..+++.||||+|||+...-..... ... +.++.++ +- .|.=+.++.+.|.+.+
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~-~~~-g~kV~lit~Dt~R~ga~eQL~~~a~~l 66 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY-KKK-GFKVGLVGADVYRPAALEQLQQLGQQI 66 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH-HHT-TCCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-HHC-CCceEEEEeeccccchhHHHHHhcccc
Confidence 456779999999998765544333 332 4444444 33 4666777777766654
|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.008 Score=47.51 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=47.7
Q ss_pred cccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 490 LRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 490 L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
.++.+ +||+..+++|.++|+ |++++..++++++.++-| ++.-+.+|.+.++.+
T Consensus 5 ~L~~~-Gig~~~~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k~ 59 (64)
T d1szpa1 5 KLQVN-GITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARL 59 (64)
T ss_dssp GGCCT-TCCHHHHHHHHTTSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhHC-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45778 999999999999999 999999999999999988 788899999888754
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.0074 Score=46.47 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=47.6
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhcc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGY 542 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~ 542 (1492)
+.|.++| +||+..+++|.++--|++.+.+++.+++.++-+ .+..++.|++++++
T Consensus 2 S~L~~I~-gVG~~~a~~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~N 56 (56)
T d1kfta_ 2 SSLETIE-GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 56 (56)
T ss_dssp CGGGGCT-TCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHTC
T ss_pred CCcccCC-CccHHHHHHHHHHhCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHcC
Confidence 4688999 999999999998744999999999999999966 69999999998863
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.011 Score=46.70 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=45.5
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC-CchHHHHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG-NFPVSRLHQDLQR 1373 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~-~~~~~~i~~~~~~ 1373 (1492)
..|.++||||+..++.|.+ .+.|+++|.+++.+++.++.+ +..++.|.++++.
T Consensus 3 d~L~~iPGIg~~~~~~Ll~-~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 3 DFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 56 (62)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred hHHhcCCCCCHHHHHHHHH-HhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHhh
Confidence 4688999999999999974 678999999999999999987 3457889999864
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.47 E-value=0.06 Score=56.26 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=66.9
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+...+..|+|+++-++|.--|.+..+.+.+..... ...++..||++
T Consensus 124 a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~---------------------------------~~~v~~l~~~~ 170 (264)
T d1gm5a3 124 AILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF---------------------------------NIHVALLIGAT 170 (264)
T ss_dssp HHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS---------------------------------SCCEEECCSSS
T ss_pred HHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhc---------------------------------cccceeecccc
Confidence 444556789999999999998888887777665321 23488999999
Q ss_pred ChhhHHHHHHHHhCCCccEEEecccccc-ccCCCcEEEEE
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAW-GVNLPAHTVVI 191 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~-Gvnlp~~~vVI 191 (1492)
+..+|..+....++|+++|+|.|-.|-. .|.+....+||
T Consensus 171 ~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~Lglvi 210 (264)
T d1gm5a3 171 TPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 210 (264)
T ss_dssp CHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred chHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceee
Confidence 9999999999999999999999966654 56555554444
|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.0091 Score=48.08 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=44.5
Q ss_pred cccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1323 WMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1323 ~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
++.+|+++..+++|+++|+.|+.+|+.++.+++..+ +++...+.|.+.+++
T Consensus 13 L~~~Gig~~~i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k 65 (70)
T d1b22a_ 13 LEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 65 (70)
T ss_dssp HHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHcCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999887 677778888777654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.78 E-value=0.14 Score=51.21 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=24.1
Q ss_pred HHHHHHhhhc--CCCcEEEecCCCCCchHHHHH
Q 043190 693 QTQIFHILYH--TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 693 Q~~~i~~~~~--~~~~vli~apTGsGKT~~~~l 723 (1492)
|.+.+..+.+ .+.++++.||.|+|||..+..
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~ 34 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLE 34 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 6677777664 345899999999999987653
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.24 Score=50.45 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+...+..|+|+++-+|+.--+.+..+.+.+.... +...|+.+|+
T Consensus 94 ~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~---------------------------------~~~~v~~l~~ 140 (233)
T d2eyqa3 94 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN---------------------------------WPVRIEMISR 140 (233)
T ss_dssp HHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT---------------------------------TTCCEEEEST
T ss_pred HHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhh---------------------------------CCCEEEeccC
Confidence 3345556688999999999988887777777654321 1234889999
Q ss_pred CCChhhHHHHHHHHhCCCccEEEeccccc-cccCCCcEEEEEe
Q 043190 151 GMLRSDRGLTERLFSEGLLKVLVCTATLA-WGVNLPAHTVVIK 192 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i~vlvaT~tla-~Gvnlp~~~vVI~ 192 (1492)
+++..+|..+.+.+.+|.++|+|-|-.+- ..+.++..-+||-
T Consensus 141 ~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 141 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp TSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred cccchhHHHHHHHHhCCCCCEEEeehhhhccCCccccccceee
Confidence 99999999999999999999999996544 4688877776663
|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.018 Score=46.26 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=47.1
Q ss_pred ccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 491 RQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 491 ~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
++.+ ++|+..+++|+++|+ |++++..++++++.++-+ ++.-+.+|.+.++.+
T Consensus 13 L~~~-Gig~~~i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k~ 66 (70)
T d1b22a_ 13 LEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 66 (70)
T ss_dssp HHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred HhhC-CCCHHHHHHHHHcCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4668 999999999999999 999999999999999988 888999999888753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.074 Score=55.71 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHH
Confidence 4679999999999999764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.23 E-value=0.029 Score=61.08 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~L 746 (1492)
...+-+...+..+...++|++|+||||||||+.. -+++..+. +..+++.+--+.+|
T Consensus 150 ~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i~--~~~rivtiEd~~El 205 (323)
T d1g6oa_ 150 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIP--KEERIISIEDTEEI 205 (323)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGSC--TTCCEEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhcc--cccceeeccchhhh
Confidence 3445566677777778899999999999999864 45555543 36788888887775
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=92.17 E-value=0.13 Score=57.47 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCHHHHHHHHhhh----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 689 FNPIQTQIFHILY----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 689 l~~~Q~~~i~~~~----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|.--|=++|..+. .+.+..++.|-||||||++.. .+++.. +..+|||+|+..+|.|.+++++..+..
T Consensus 12 p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~----~rp~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV----NKPTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH----TCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 5556766666554 234678999999999998654 333332 578999999999999999999886643
|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Aeropyrum pernix [TaxId: 56636]
Probab=92.13 E-value=0.047 Score=44.19 Aligned_cols=51 Identities=18% Similarity=0.336 Sum_probs=43.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1322 LWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1322 L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
|..+||||+..++.|.++ +.|++++..++.+++.++ +++..++.|.++++.
T Consensus 15 L~~IpgIG~~~a~~L~~~-F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~~ 67 (70)
T d2bgwa1 15 LQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 67 (70)
T ss_dssp HHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCcCHHHHHHHHHH-hCCHHHHHHcCHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 558999999999999876 679999999999999887 677788888888754
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.01 E-value=0.36 Score=48.72 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=25.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~ 750 (1492)
+.+++.||+|+|||-... ++...+.. .+..++|+ +...+..+.
T Consensus 37 n~l~l~G~~G~GKTHLl~-A~~~~~~~-~~~~~~~~-~~~~~~~~~ 79 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQ-AAGNEAKK-RGYRVIYS-SADDFAQAM 79 (213)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHH-TTCCEEEE-EHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHH-HHHHHhcc-CccceEEe-chHHHHHHH
Confidence 348999999999998654 34443333 24555554 444444443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.97 E-value=0.091 Score=54.73 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.+.+++.||+|+|||+.+-... ..+ +..++.+.+.
T Consensus 42 ~~giLl~GppGtGKT~la~aia-~~~----~~~~~~i~~~ 76 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVA-GEA----RVPFITASGS 76 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH-HHT----TCCEEEEEHH
T ss_pred CceEEEecCCCCChhHHHHHHH-HHc----CCCEEEEEhH
Confidence 3579999999999999764333 322 4556666543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.16 Score=52.03 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHhhhcCC--CcEEEecCCCCCchHHHHHHH
Q 043190 695 QIFHILYHTD--NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 695 ~~i~~~~~~~--~~vli~apTGsGKT~~~~l~i 725 (1492)
+.+..++.++ .++++.||+|+|||.++-..+
T Consensus 25 ~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 25 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECCCCCCchhhHHHHH
Confidence 3344444333 479999999999999875443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.21 Score=48.97 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=23.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
++++|.||+|+|||+.+. .+.+.+........++.++
T Consensus 2 k~v~ItG~~GtGKTtl~~-~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIH-KASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CCEEEESCCSSCHHHHHH-HHHHHHHHTTCCCEEEECC
T ss_pred cEEEEECCCCCcHHHHHH-HHHHHHHHCCCEEEEEEec
Confidence 689999999999999655 4445554433333333333
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.31 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=18.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHh
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLF 729 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l 729 (1492)
+.+|+.||+|+|||..+.. +.+.+
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~-~~~~l 58 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARL-LAKGL 58 (239)
T ss_dssp SEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred eeEEEECCCCCcHHHHHHH-HHHHh
Confidence 3489999999999998764 34433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.29 Score=50.11 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHHHhhhcCCC--cEEEecCCCCCchHHHHHH
Q 043190 692 IQTQIFHILYHTDN--NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~--~vli~apTGsGKT~~~~l~ 724 (1492)
...+.+..++.+++ ++++.||+|+|||..+...
T Consensus 21 ~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~l 55 (227)
T d1sxjc2 21 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 55 (227)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHH
Confidence 33444444443433 6999999999999876543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.99 E-value=0.52 Score=49.73 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.6
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
..|+-+++.|+||+|||..+...+.+.... .+.+++|+..-
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~-~g~~v~~~s~E 73 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHhhhhh-cccceeEeeec
Confidence 367899999999999998776665554332 36788888754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=90.80 E-value=0.27 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.3
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhcc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNT 731 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~ 731 (1492)
.++|.||+|||||+.+ ..+...+..
T Consensus 2 ki~I~G~~G~GKSTLl-~~i~~~l~~ 26 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLV-KKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHGG
T ss_pred EEEEECCCCcHHHHHH-HHHHhcCCC
Confidence 5899999999999953 345555543
|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.58 E-value=0.081 Score=42.34 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=44.7
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
.|..+||+|+..++.|.++ +.|++++..++.+++..+ +++..++.|.++++.
T Consensus 11 ~L~~I~gIG~~~a~~L~~~-f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~~~ 64 (68)
T d1x2ia1 11 IVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 64 (68)
T ss_dssp HHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCcCHHHHHHHHHH-cCCHHHHHHhHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 3567999999999999876 779999999999999987 778888888888753
|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Aeropyrum pernix [TaxId: 56636]
Probab=90.49 E-value=0.092 Score=42.34 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=44.9
Q ss_pred cccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhcc
Q 043190 490 LRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGY 542 (1492)
Q Consensus 490 L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~ 542 (1492)
|..+| +||+..+++|.++--|++++.+++.+++.++=+ ++..++.|.++++.
T Consensus 15 L~~Ip-gIG~~~a~~L~~~F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~~ 67 (70)
T d2bgwa1 15 LQSFP-GIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 67 (70)
T ss_dssp HHTST-TCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HcCCC-CcCHHHHHHHHHHhCCHHHHHHcCHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 55899 999999999988744999999999999999866 68889999888753
|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA excision repair protein ERCC-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.13 Score=42.38 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=45.7
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
-|..+||||+..++.|.++ +.|++++..++.+++..+ +++...+.|.++++.
T Consensus 20 ~L~~I~gIg~~~a~~L~~~-F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f~~ 73 (78)
T d2a1jb1 20 CLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (78)
T ss_dssp HHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HhcCCCCcCHHHHHHHHHH-hCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHHcC
Confidence 3568999999999999875 779999999999999988 889889999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.73 E-value=0.33 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHh
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLF 729 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l 729 (1492)
.++++.||.|+|||+.+-. +.+.+
T Consensus 34 ~~lll~Gp~G~GKTt~~~~-la~~l 57 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMA-LLESI 57 (252)
T ss_dssp CCEEEECSTTSSHHHHHHT-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHhh
Confidence 4699999999999997753 34443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.22 E-value=0.6 Score=47.68 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.5
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.+++++||+|+|||+++-.
T Consensus 46 ~~lll~Gp~G~GKTtla~~ 64 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALA 64 (231)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999987653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.66 E-value=0.31 Score=50.78 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
+.+++.||+|+|||+++-
T Consensus 53 ~~lll~GPpG~GKTt~a~ 70 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAH 70 (253)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998764
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=86.89 E-value=0.61 Score=43.11 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=49.7
Q ss_pred EEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEE
Q 043190 707 VLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADII 786 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Ii 786 (1492)
-++.||-.||||.-.+.-+-+... .+.+++++-|... .+. +..+..-.|. ....+.
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~--~~~kv~~ikp~~D----------~R~----~~~i~s~~g~--------~~~~~~ 60 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKID----------TRS----IRNIQSRTGT--------SLPSVE 60 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCC----------GGG----CSSCCCCCCC--------SSCCEE
T ss_pred EEEEccccCHHHHHHHHHHHHHHH--CCCcEEEEEEccc----------ccc----cceEEcccCc--------eeeeEE
Confidence 478999999999976655544332 3778999999844 111 1111111111 112234
Q ss_pred EECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 787 ISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 787 v~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
+.+...+...... .....++++|.|||+|.+.
T Consensus 61 ~~~~~~~~~~~~~---~~~~~~~dvI~IDE~QFf~ 92 (139)
T d2b8ta1 61 VESAPEILNYIMS---NSFNDETKVIGIDEVQFFD 92 (139)
T ss_dssp ESSTHHHHHHHHS---TTSCTTCCEEEECSGGGSC
T ss_pred eccchhhHHHHHh---hccccCcCEEEechhhhcc
Confidence 4443333333332 2234678999999999874
|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DinB homolog (DBH) species: Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
Probab=86.31 E-value=0.27 Score=50.71 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=47.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhc
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~ 1372 (1492)
.|+..|||||+...++|.+.||.|+.||..++.+.+...++...+..+.+.++
T Consensus 178 lpl~~l~GiG~~~~~~L~~~Gi~t~gdl~~~~~~~L~~~fG~~~g~~l~~~a~ 230 (240)
T d1jx4a2 178 LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLAR 230 (240)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHT
T ss_pred cchhhcCCCCHHHHHHHHHhCCCcHHHHHcCCHHHHHHHHCHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999777777777764
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=86.20 E-value=0.83 Score=42.22 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=29.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.|.=-+++||-.||||+-.+.-+-+.-. .+.+++++-|...
T Consensus 6 ~G~l~lI~GpMfSGKTteLi~~~~~~~~--~g~~vl~i~~~~D 46 (141)
T d1xx6a1 6 HGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPEID 46 (141)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC--
T ss_pred ceeEEEEEeccccHHHHHHHHHHHHhhh--cCCcEEEEEeccc
Confidence 4555688999999999976655544332 3778999999854
|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.79 E-value=0.23 Score=39.59 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=43.7
Q ss_pred cccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 490 LRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 490 L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
|..+| +||+..+++|.++--|++.+.+++.+++.++=+ .+..++.|.++++
T Consensus 12 L~~I~-gIG~~~a~~L~~~f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~~ 63 (68)
T d1x2ia1 12 VEGLP-HVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 63 (68)
T ss_dssp HTTST-TCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HcCCC-CcCHHHHHHHHHHcCCHHHHHHhHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55799 999999999998744999999999999988865 5888888888775
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.38 E-value=0.5 Score=49.25 Aligned_cols=19 Identities=42% Similarity=0.693 Sum_probs=16.2
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+|+.||.|+|||+.+-
T Consensus 38 ~~giLL~GppGtGKT~l~~ 56 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIAR 56 (258)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CceeEEecCCCCCchHHHH
Confidence 4679999999999998653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.31 E-value=0.5 Score=52.78 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=34.1
Q ss_pred CCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 689 FNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
+.+.|.+.+..++. .+.-+|++||||||||+.. ..+++.+... ..+++-+
T Consensus 142 ~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~~~~-~~~i~ti 192 (401)
T d1p9ra_ 142 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSS-ERNILTV 192 (401)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCT-TSCEEEE
T ss_pred ccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhhcCC-CceEEEe
Confidence 56888888887763 3447899999999999874 3456655432 3444433
|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase iota species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=0.45 Score=50.01 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=48.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~ 1374 (1492)
.|+.-|||||....++|.+.||.|+.||++++.+.+.+.++...+..+.+.++-.
T Consensus 208 ~pv~~l~GiG~~~~~~L~~~GI~ti~dl~~~~~~~L~~~fG~~~g~~l~~~a~G~ 262 (273)
T d1zeta2 208 NHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGE 262 (273)
T ss_dssp SSGGGSTTCCHHHHHHHHTTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHhcCCCHHHHHHHHHhCCCcHHHHhcCCHHHHHHHHCHHHHHHHHHHHcCc
Confidence 4788999999999999999999999999999999999999877777888877543
|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: DNA polymerase beta-like, second domain domain: DNA polymerase beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.43 Score=36.05 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhc
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLD 1349 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~ 1349 (1492)
.|..+.|||+..|+++.+.|++|++||..
T Consensus 8 ~l~~I~GvGp~~A~~l~~~Gi~ti~dLr~ 36 (57)
T d2fmpa2 8 FLTRVSGIGPSAARKFVDEGIKTLEDLRK 36 (57)
T ss_dssp HHTTSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred HHhccccccHHHHHHHHHhCCCCHHHHHh
Confidence 36678899999999999999999999975
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.40 E-value=0.21 Score=56.59 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=17.0
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+|+|+.||||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 5699999999999999765
|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: DNA polymerase beta-like, second domain domain: Terminal deoxynucleotidyl transferase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.19 E-value=0.37 Score=36.91 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=26.3
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhc
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLD 1349 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~ 1349 (1492)
.|.++.|||+..|+++.+.|++|++||.+
T Consensus 9 ~f~~I~GvGp~~A~~l~~~Gi~ti~dL~~ 37 (60)
T d1jmsa3 9 LFTSVFGVGLKTAEKWFRMGFRTLSKIQS 37 (60)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHhccccccHHHHHHHHHhCCCCHHHHHh
Confidence 36788999999999999999999999985
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.16 E-value=0.61 Score=48.76 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=22.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
.+.+++.||+|+|||..+-. +...+ +..++++.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~a-la~~~----~~~~~~~~ 73 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKA-IANEC----QANFISIK 73 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHH-HHHHT----TCEEEEEC
T ss_pred CCeEEEECCCCCcchhHHHH-HHHHh----CCcEEEEE
Confidence 46799999999999997643 22222 44555554
|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA excision repair protein ERCC-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.14 E-value=0.49 Score=38.79 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=44.5
Q ss_pred ccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 489 PLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
-|..+| +||+..++.|.++--|++++.+++.+++..+=+ .+..++.|.++++
T Consensus 20 ~L~~I~-gIg~~~a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f~ 72 (78)
T d2a1jb1 20 CLTTVK-SVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 72 (78)
T ss_dssp HHTTST-TCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HhcCCC-CcCHHHHHHHHHHhCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHHc
Confidence 355899 999999999998744999999999999999844 5888999998885
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.39 E-value=0.27 Score=53.04 Aligned_cols=20 Identities=50% Similarity=0.644 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..++++++||||+|||..+-
T Consensus 48 ~~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999999763
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=81.53 E-value=1.4 Score=48.70 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHhh---hcCCC-cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 688 HFNPIQTQIFHIL---YHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~---~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
.|+.-|-+++..+ ++.|+ ...+.|.||||||++.. .+.+.. +..+|||+|+...|.+.++++...++
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~----~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL----GRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh----CCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 3445565566654 33454 57889999999997543 333332 56789999999999999999887654
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.30 E-value=1.7 Score=39.67 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=27.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.=-+++||-.||||.-.+..+-+... .+.+++++-|...
T Consensus 3 ~L~li~GpMfsGKTt~Li~~~~~~~~--~g~~v~~ikp~~D 41 (133)
T d1xbta1 3 QIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKD 41 (133)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTC
T ss_pred EEEEEEecccCHHHHHHHHHHHHHHH--cCCcEEEEecccc
Confidence 34578999999999975554444333 3678999998744
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.70 E-value=0.71 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=25.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.++++.||+|+|||.++- .+.+.+......+.+++
T Consensus 44 ~~lll~GppGtGKT~l~~-~l~~~l~~~~~~~~~~~ 78 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLR-KLWELYKDKTTARFVYI 78 (276)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHHHTTSCCCEEEEE
T ss_pred CceEEECCCCCCHHHHHH-HHHHHHhcccCCcEEEe
Confidence 689999999999998764 46666654444555554
|
| >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: PsbU-like domain: Photosystem II 12 kDa extrinsic protein PsbU species: Thermosynechococcus elongatus [TaxId: 146786]
Probab=80.59 E-value=0.73 Score=39.08 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=35.3
Q ss_pred CCcccccCCCCHHHHHHHHhCC-CCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcC
Q 043190 1319 DSALWMFPCMNNDLLGTLRARG-ISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~-i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~ 1373 (1492)
...|.+|||||+..++++-++| +.+++||.+.+ .++++..+.+.+++..
T Consensus 26 ~~eL~~lpGIg~~~A~~Iv~~gpf~s~edL~~V~------GIg~~~~e~lk~yl~~ 75 (98)
T d2axtu1 26 IAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIP------GLTERQKQILRENLEH 75 (98)
T ss_dssp GGGGTTSTTCTHHHHHHHHHSCCCSSGGGGGGCT------TCCTTHHHHHHHHGGG
T ss_pred HHHHHHhhhhcHHHHHHHHHcCCcCCHHHHhhCC------CCCHHHHHHHHHHHhc
Confidence 3468999999999999887765 88888888764 2455555555555543
|