Citrus Sinensis ID: 043263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MFRRLSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI
Secondary Structure (PSIPRED)
ccccccccHHHHHHccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHccccEEEEEEEcccccccccccccccEEccHHHHHHHHHcccccccEEEccccccccHHHHHHHHHccccEEEEEEHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccEEEEEcccccEEEccccccccHHccHEEEEEccccccccccccccccccccccHcHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHccccEEEccEEEcccccccccEcccEEEccHHHHHHHHHcccEEEEEEEccEEEEEEHHHHHHHHHHccEEEEEccHHHHHHHHccHHHccEEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHcccHHHHHccccc
Coil and Loop (DISEMBL)
MFRRLSTSFSLYIiskpkspfalqrnpiksekqyQRFHyslsltptplvfssnirmnhtqaapvNKIELLRSLEASlghafdsnpvcpppnpliivisgpsgvgkDTVIKKLRESRDSLHFVVtatsrpmrpgevngkdyffVSKEEFLQMVDKNELLEYALVYgdykgipkKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI
Flexible Loop (DISEMBL)
mfrrlstsfslyiiskpkspfalqrnpIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKlresrdslhfvvtatsrpmrpgevngKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERlverktenrEELLVRIATareevqhvkNFDYVVVNAEGKLDSAVKLVESVidaekakvrqrsavi
Low Complexity Region (SEG)
MFRRLSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI
Disordered region (IsUnstruct)
********FSLYIIS*****************QYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTAT*******EVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI**************
Disordered Region (DISOPRED)
*******SFSLYIISKPK***************************************************************************IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV*******
Disordered Region (DISEMBL)
********FSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA*********
Disordered Region (DISPRO)
*FR*LSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIE*******************PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRRLSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLxxxxxxxxxxxxxxxxxxxxxVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q3ZWD8	206	Guanylate kinase OS=Dehal	yes	no	0.664	0.922	0.439	2e-44
Q3ZAF9	206	Guanylate kinase OS=Dehal	yes	no	0.667	0.927	0.453	8e-41
Q182S8	205	Guanylate kinase OS=Clost	yes	no	0.667	0.931	0.396	5e-37
Q895Q5	208	Guanylate kinase OS=Clost	yes	no	0.639	0.879	0.427	8e-37
Q67PR9	211	Guanylate kinase OS=Symbi	yes	no	0.678	0.919	0.424	3e-35
Q9X215	207	Guanylate kinase OS=Therm	yes	no	0.639	0.884	0.403	4e-35
Q3AC14	204	Guanylate kinase OS=Carbo	yes	no	0.639	0.897	0.387	9e-35
Q8R9S6	206	Guanylate kinase OS=Therm	yes	no	0.643	0.893	0.422	1e-34
Q4L5R1	207	Guanylate kinase OS=Staph	yes	no	0.664	0.917	0.430	1e-34
Q0SS73	216	Guanylate kinase OS=Clost	yes	no	0.674	0.893	0.387	2e-34

>sp|Q3ZWD8|KGUA_DEHSC Guanylate kinase OS=Dehalococcoides sp. (strain CBDB1) GN=gmk PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 136/191 (71%), Gaps = 1/191 (0%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           PL++++SGPSGVGKD V+ +++E +  L ++VT T+RP R  E  G DY F+   EF ++
Sbjct: 13  PLLLIVSGPSGVGKDAVLARMKERKLPLTYIVTTTTRPKRETETEGVDYNFIRPAEFQEL 72

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + +NELLE+A VYG++ G+PK  IR+ +++G D++++VD+QGA ++++I+ + AVF+FL 
Sbjct: 73  ISQNELLEWANVYGNFYGVPKAPIRQALSRGSDVIVKVDVQGAASIKKIVPN-AVFIFLM 131

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
                 L  RL  R TE+ E L  R+ATA  E++ + +FDYVVVN EG++D+AV+ + S+
Sbjct: 132 PPDMDELTRRLEHRLTESPESLRRRLATAPLEIEKLPDFDYVVVNPEGEIDNAVREIMSI 191

Query: 272 IDAEKAKVRQR 282
           I AE  +++ R
Sbjct: 192 IAAEHCRIQPR 202

Essential for recycling GMP and indirectly, cGMP.
Dehalococcoides sp. (strain CBDB1) (taxid: 255470)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 8

>sp|Q3ZAF9|KGUA_DEHE1 Guanylate kinase OS=Dehalococcoides ethenogenes (strain 195) GN=gmk PE=3 SV=1

 Score =  167 bits (423), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 134/192 (69%), Gaps = 1/192 (0%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           PL++V+SGPSGVGKD V+ +++E +  L ++VT T+R  R  E  G DY F+   EF Q+
Sbjct: 13  PLLLVVSGPSGVGKDAVLARMKERKLPLAYIVTTTTRTKREKETEGVDYNFIRPAEFQQL 72

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + +NELLE+A VYG++ G+PK  IR+ +A G+D++++VD+QGA ++++I+  +AVF+FL 
Sbjct: 73  IGQNELLEWANVYGNFYGVPKAPIRQALAHGFDVIVKVDVQGAASIKKIV-PNAVFIFLM 131

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
                 L  RL  R TE+ E L  R+ATA  E++ + +FDYVVVN EG++D+AV  + S+
Sbjct: 132 PPDMDELTRRLEHRLTESPESLKRRLATAPLEIEKLPDFDYVVVNPEGEIDNAVSEIMSI 191

Query: 272 IDAEKAKVRQRS 283
           I AE  ++  RS
Sbjct: 192 ISAEHCRINPRS 203

Essential for recycling GMP and indirectly, cGMP.

Dehalococcoides ethenogenes (strain 195) (taxid: 243164)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q182S8|KGUA_CLOD6 Guanylate kinase OS=Clostridium difficile (strain 630) GN=gmk PE=3 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           L++V+SGPSG GK T+ K+L +  D++   V+AT+R  R GEV+G +YFF+SKE+F +M+
Sbjct: 7   LLLVVSGPSGAGKGTICKELLKENDTIKLSVSATTRKPRTGEVDGVNYFFISKEKFEEMI 66

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
           +K E LEYA +Y ++ G PK  I E + KG D++L +++QGA+ ++ +  +  VF+F+  
Sbjct: 67  EKGEFLEYAQIYDNFYGTPKAAIMECLEKGQDVLLEIEMQGAKQIKEVCPE-GVFIFVLP 125

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L  R+V R TE   E+  R + A EE++ +K++DY + N + K  ++ K +E +I
Sbjct: 126 PSLEELKNRIVGRGTETEAEIEKRFSCAYEEIKMIKDYDYFIFNEDVK--TSAKEIEGII 183

Query: 273 DAEKAKVRQRSAVI 286
            +EK KV +   +I
Sbjct: 184 SSEKNKVSRYKNII 197

Essential for recycling GMP and indirectly, cGMP.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q895Q5|KGUA_CLOTE Guanylate kinase OS=Clostridium tetani (strain Massachusetts / E88) GN=gmk PE=3 SV=1

 Score =  154 bits (389), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 123/187 (65%), Gaps = 4/187 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           L+IVISGPSG GK TV K+L  + ++  F V++T+R  R GE+ GK Y+F+SKEEF   +
Sbjct: 5   LLIVISGPSGTGKGTVCKELLRN-NNFWFSVSSTTRDPREGEIQGKSYYFMSKEEFEDKI 63

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
            +N+ LEYA VYG+Y G PK ++ E + KG D++L +DIQGA  ++    +  +F+F+  
Sbjct: 64  KENDFLEYAKVYGNYYGTPKSKVIEMLDKGKDVILEIDIQGALQVKENYKE-GIFIFILP 122

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L  R+++R TE  E L+ R  +A +E+ +V  ++Y VVN   K+  AV+ ++S+I
Sbjct: 123 PSMEELKNRIIKRGTETEESLMTRFKSAYKEINYVSKYNYAVVND--KVHDAVEKIQSII 180

Query: 273 DAEKAKV 279
            AEK +V
Sbjct: 181 SAEKCRV 187

Essential for recycling GMP and indirectly, cGMP.

Clostridium tetani (strain Massachusetts / E88) (taxid: 212717)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q67PR9|KGUA_SYMTH Guanylate kinase OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=gmk PE=3 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 90  PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
           P  L+IV++GPS VGK T+ + L      + F V+ T+RP RPGEV+G +Y+F+SKEEF 
Sbjct: 5   PKGLLIVVTGPSAVGKGTICRALLAETPGIRFSVSCTTRPKRPGEVDGVEYYFISKEEFE 64

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
           + +   E LE+A VYG+Y G P+  + E  A+G D++L +D  GAR +R    D AV VF
Sbjct: 65  RRIAAGEFLEWAEVYGNYYGTPRGYVEEVTAQGQDVILDIDRVGARAVREQYPD-AVSVF 123

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE 269
           +   S  AL +R+  R TE+ E +  R+A A E ++    +DYV+VN +  L  AV  + 
Sbjct: 124 VIPPSMEALRQRIAARGTESPEAVARRLAEAPEWIREGLTYDYVIVNDD--LARAVAELR 181

Query: 270 SVIDAEKAK-VRQRSAVI 286
           ++I AEKA+ VR  +A+I
Sbjct: 182 AIIMAEKARTVRNGAALI 199

Essential for recycling GMP and indirectly, cGMP.

Symbiobacterium thermophilum (taxid: 2734)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q9X215|KGUA_THEMA Guanylate kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=gmk PE=3 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 128/186 (68%), Gaps = 3/186 (1%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           + VI GPSG GK ++IK++ +  D++ F V+ T+RP RP E +GKDYFF+++EEFL+ V+
Sbjct: 5   LFVICGPSGAGKTSIIKEVLKRLDNVVFSVSCTTRPKRPHEEDGKDYFFITEEEFLKRVE 64

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
           + E LE+A V+G   G  +  +  ++ +G D+VL +D+QGA ++++   ++ VF+++A  
Sbjct: 65  RGEFLEWARVHGHLYGTLRSFVESHINEGKDVVLDIDVQGALSVKKKYSNT-VFIYVAPP 123

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273
           S   L ER+++R TE   ++LVR+  A+ E+  +  FDY+VVN    L+ AV++V S++ 
Sbjct: 124 SYADLRERILKRGTEKEADVLVRLENAKWELMFMDEFDYIVVNE--NLEDAVEMVVSIVR 181

Query: 274 AEKAKV 279
           +E+AKV
Sbjct: 182 SERAKV 187

Essential for recycling GMP and indirectly, cGMP.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q3AC14|KGUA_CARHZ Guanylate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gmk PE=3 SV=1

 Score =  147 bits (371), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 127/186 (68%), Gaps = 3/186 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           +++V+SGPSG GK T+ +++R+   +L + ++AT+R  R GE++G  Y+F+ +++F +M+
Sbjct: 5   MLVVVSGPSGAGKGTICQEIRKRNPNLFYSISATTREKRVGEIDGVHYYFIDRQQFEKMI 64

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
             +E LE+A VYG+Y G PKK + E +A+G D++L +DI+GAR +++   +  VFVF+  
Sbjct: 65  ANDEFLEWADVYGNYYGTPKKPVFEALARGQDVILEIDIKGARQVKKTYPE-GVFVFILP 123

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L ERL +R T+  E ++ R+  A EE+ +   +DY+++N +  L++AV  +E+V+
Sbjct: 124 PSISILEERLRKRGTDKEEIIVKRMQMAWEEIANCDWYDYLILNDD--LETAVNDLEAVL 181

Query: 273 DAEKAK 278
            AEK K
Sbjct: 182 TAEKLK 187

Essential for recycling GMP and indirectly, cGMP.

Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q8R9S6|KGUA_THETN Guanylate kinase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=gmk PE=3 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 123/187 (65%), Gaps = 3/187 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           L+IVISGPSG GK T+ K L E    L   ++AT+R  R GEV+GK+YFF S+EEF +M+
Sbjct: 8   LLIVISGPSGAGKGTICKALIEKEKDLKLSISATTRQPRAGEVDGKNYFFKSEEEFKRMI 67

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
           +++  LE+A VY  Y G PK+ + + + +G D+VL +DIQGA  ++    +  VF+F+  
Sbjct: 68  EEDAFLEWAKVYDHYYGTPKEFVLKNLEEGNDVVLEIDIQGALKVKEKFPE-GVFIFILP 126

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L  R+ +R TE+ EE++ R  +A EE+ +V  ++YVV+N +  +D AV+ + ++I
Sbjct: 127 PSMEELRNRIKKRGTESEEEIIKRFKSAYEELNYVSKYNYVVINDD--VDRAVEKIRAII 184

Query: 273 DAEKAKV 279
            AEK +V
Sbjct: 185 IAEKCRV 191

Essential for recycling GMP and indirectly, cGMP.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q4L5R1|KGUA_STAHJ Guanylate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gmk PE=3 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 131/195 (67%), Gaps = 5/195 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           L+IV+SGPSGVGK TV K++ +    S  + V+ T+R MR GEV+G DYFF +KEEF  +
Sbjct: 7   LLIVLSGPSGVGKGTVRKEIFDDPTTSYKYSVSMTTRNMREGEVDGVDYFFKTKEEFEAL 66

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + +++ +EYA   G+Y G P + +++ MA G+D+ L ++++GA+ +R+   D A+F+FLA
Sbjct: 67  IQEDQFIEYAEYVGNYYGTPVQYVKDTMAAGHDVFLEIEVEGAKQVRKKFPD-ALFIFLA 125

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L ERLV R TE+ E++  R+  AR+EV+ +  +DYVVVN E  L  A + ++S+
Sbjct: 126 PPSLDHLKERLVGRGTESDEKIQSRVNEARKEVEMMNLYDYVVVNDEVHL--AKERIQSI 183

Query: 272 IDAEKAKVRQRSAVI 286
           ++AE  K R+R   I
Sbjct: 184 VEAEHLK-RERVEAI 197

Essential for recycling GMP and indirectly, cGMP.

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

>sp|Q0SS73|KGUA_CLOPS Guanylate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=gmk PE=3 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/196 (38%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 84  NPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV 143
           N +      ++IVISGPSG GK T+ K L E  D +   V+AT+R  R GEV+G +Y F+
Sbjct: 3   NKIHKNNRGVLIVISGPSGAGKGTICKALLEKHDDIFISVSATTRNPRVGEVDGVNYHFL 62

Query: 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD 203
           +KEEF Q + +++ LE+A VYG+Y G PK  + + + +G +++L +DIQGA  ++    D
Sbjct: 63  TKEEFKQRIAEDDFLEHAEVYGNYYGTPKSSVEKMLDEGKNVILEIDIQGALKVKEKATD 122

Query: 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263
             VF+F+   S   L +R+++R +E  E L+ R  +A +E+ +V  ++Y VVN    ++ 
Sbjct: 123 -GVFIFILPPSMEELKQRIIKRGSETPESLMTRFKSAYKEINYVSKYNYAVVN--DNVED 179

Query: 264 AVKLVESVIDAEKAKV 279
           AVK +E+++ AEK +V
Sbjct: 180 AVKKIEAILLAEKCRV 195

Essential for recycling GMP and indirectly, cGMP.

Clostridium perfringens (strain SM101 / Type A) (taxid: 289380)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255551505	239	guanylate kinase, putative [Ricinus comm	0.776	0.928	0.801	1e-101
224102585	223	predicted protein [Populus trichocarpa]	0.765	0.982	0.794	5e-98
449517617	295	PREDICTED: guanylate kinase-like isoform	0.895	0.867	0.664	1e-97
224107255	223	predicted protein [Populus trichocarpa]	0.762	0.977	0.784	4e-97
449432753	295	PREDICTED: guanylate kinase-like isoform	0.895	0.867	0.660	5e-97
18397500	282	guanylate kinase [Arabidopsis thaliana]	0.968	0.982	0.643	2e-95
356555608	297	PREDICTED: guanylate kinase-like [Glycin	0.968	0.932	0.634	4e-94
6862924	240	putative guanylate kinase [Arabidopsis t	0.762	0.908	0.756	8e-93
297829144	306	hypothetical protein ARALYDRAFT_340799 [	0.748	0.699	0.757	5e-91
226499356	293	guanylate kinase [Zea mays] gi|195628210	0.762	0.744	0.733	6e-91

>gi|255551505|ref|XP_002516798.1| guanylate kinase, putative [Ricinus communis] gi|223543886|gb|EEF45412.1| guanylate kinase, putative [Ricinus communis]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/222 (80%), Positives = 206/222 (92%)

Query: 65  NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT 124
            K ELLR+LE+SLG AF S+P+ PPPNPL+IVISGPSGVGKD VIKKLRE R+SLHFVVT
Sbjct: 18  TKPELLRALESSLGSAFSSDPILPPPNPLVIVISGPSGVGKDAVIKKLREVRESLHFVVT 77

Query: 125 ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYD 184
           ATSRPMRPGEV+G+DYFFV+KEEFL MV++NELLEYALVYG+YKGIPKKQIREYM+KGYD
Sbjct: 78  ATSRPMRPGEVDGEDYFFVTKEEFLSMVERNELLEYALVYGEYKGIPKKQIREYMSKGYD 137

Query: 185 IVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV 244
           IVLRVDIQGA TLR+IL +SAVF+FL AESEM LVERL++RKTE  E LLVR++TAREE+
Sbjct: 138 IVLRVDIQGAETLRKILKNSAVFIFLVAESEMELVERLIDRKTETAEALLVRVSTAREEM 197

Query: 245 QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI 286
           +HVKNFDYV+VN +GKL++AVKL+ES+IDAEKAKVRQRSAVI
Sbjct: 198 KHVKNFDYVIVNGQGKLENAVKLMESIIDAEKAKVRQRSAVI 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102585|ref|XP_002312736.1| predicted protein [Populus trichocarpa] gi|222852556|gb|EEE90103.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 174/219 (79%), Positives = 202/219 (92%)

Query: 64  VNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVV 123
           V+K E+LR+LE SLG +F +NP+ PPPNPLIIVISGPSGVGKD +IKKLR+ R+SLHFVV
Sbjct: 5   VSKPEMLRALEFSLGSSFSTNPIFPPPNPLIIVISGPSGVGKDAIIKKLRQVRESLHFVV 64

Query: 124 TATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGY 183
           TATSRPMR GEV+GKDY+FVSKEEFL MV++NELLEYALVYGDYKGIPKKQIRE+M KG+
Sbjct: 65  TATSRPMREGEVDGKDYYFVSKEEFLSMVERNELLEYALVYGDYKGIPKKQIREFMEKGH 124

Query: 184 DIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE 243
           DIVLRVD+QGA TLR+ILG+SAVF++L AESE+ LV+RL++RKTE  E LLVRIATAREE
Sbjct: 125 DIVLRVDVQGAETLRKILGNSAVFIYLVAESELELVKRLIDRKTETSEALLVRIATAREE 184

Query: 244 VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
           V+HV++FDYVVVN EGKLDSAVKLVES+IDAEKAKVRQR
Sbjct: 185 VKHVRDFDYVVVNGEGKLDSAVKLVESIIDAEKAKVRQR 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517617|ref|XP_004165842.1| PREDICTED: guanylate kinase-like isoform 1 [Cucumis sativus] gi|449517619|ref|XP_004165843.1| PREDICTED: guanylate kinase-like isoform 2 [Cucumis sativus]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/277 (66%), Positives = 220/277 (79%), Gaps = 21/277 (7%)

Query: 19  SPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQ---------AAPVNKIEL 69
           +P +L+  PI+S               TP  FSS  +M   +             ++ EL
Sbjct: 31  NPISLKSKPIQS------------FPLTPPFFSSISQMGDARRPPFPTIPPPDKADRSEL 78

Query: 70  LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           LRSLE SL  +F S+P+ P P+PL+IVISGPSGVGKD VIK+LRE R+ LHFVVTATSRP
Sbjct: 79  LRSLEFSLASSFSSDPLVPNPSPLVIVISGPSGVGKDAVIKRLREVREGLHFVVTATSRP 138

Query: 130 MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRV 189
           MRPGEV+GKDY+FVSKE+FL M+ +NELLEYALVYGDYKGIPK+QIRE+MAKGYDIVLRV
Sbjct: 139 MRPGEVDGKDYYFVSKEDFLDMIARNELLEYALVYGDYKGIPKRQIREFMAKGYDIVLRV 198

Query: 190 DIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN 249
           D QGA TLR++LG+SAVFVFL AESE+ LVERL++RKTE +E LLVR+ATAREEV+HVKN
Sbjct: 199 DTQGAETLRKVLGNSAVFVFLMAESEVKLVERLIDRKTETKESLLVRVATAREEVKHVKN 258

Query: 250 FDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI 286
           FDYVVVNA+GKL+SAVKLVES+IDAEKAKV QR+AV+
Sbjct: 259 FDYVVVNADGKLESAVKLVESIIDAEKAKVLQRNAVV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107255|ref|XP_002314423.1| predicted protein [Populus trichocarpa] gi|222863463|gb|EEF00594.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 201/218 (92%)

Query: 65  NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT 124
           +K E+LR+LE S+G +F +NP+CPPPNPLIIVISGPSGVGKD VIKKLR+ R+SLHFVVT
Sbjct: 6   SKPEMLRALEFSMGSSFSTNPICPPPNPLIIVISGPSGVGKDAVIKKLRQVRESLHFVVT 65

Query: 125 ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYD 184
           ATSRP R GEV+GKDY+FVS+EEFL MV++NELLEYALVYGDYKGIPKKQIRE+MAKG+D
Sbjct: 66  ATSRPTREGEVDGKDYYFVSEEEFLSMVERNELLEYALVYGDYKGIPKKQIREFMAKGHD 125

Query: 185 IVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV 244
           IVLRVD+QGA TLR+ILG+SAVF++L AESE+ LVERL++RKTE  E LLVRIATAREEV
Sbjct: 126 IVLRVDVQGAETLRKILGNSAVFIYLVAESELELVERLIDRKTEASEALLVRIATAREEV 185

Query: 245 QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
           +HV++FDYVVVN EGKLD+AVKLV S+IDAEKAKV+QR
Sbjct: 186 KHVRDFDYVVVNGEGKLDNAVKLVGSIIDAEKAKVQQR 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432753|ref|XP_004134163.1| PREDICTED: guanylate kinase-like isoform 1 [Cucumis sativus] gi|449432755|ref|XP_004134164.1| PREDICTED: guanylate kinase-like isoform 2 [Cucumis sativus] gi|449432757|ref|XP_004134165.1| PREDICTED: guanylate kinase-like isoform 3 [Cucumis sativus]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 183/277 (66%), Positives = 220/277 (79%), Gaps = 21/277 (7%)

Query: 19  SPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQ---------AAPVNKIEL 69
           +P +L+  PI+S               TP  FSS  +M   +             ++ EL
Sbjct: 31  NPISLKSKPIQS------------FPLTPPFFSSISQMGDARRPPFPTIPPPDKADRSEL 78

Query: 70  LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           LRSLE SL  +F S+P+ P P+PL+IVISGPSGVGKD VIK+LRE R+ LHFVVTATSRP
Sbjct: 79  LRSLEFSLASSFSSDPLVPNPSPLVIVISGPSGVGKDAVIKRLREVREGLHFVVTATSRP 138

Query: 130 MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRV 189
           MRPGEV+GKDY+FVSKE+FL M+ +NELLEYALVYGDYKGIPK+QIRE+MAKGYDIVLRV
Sbjct: 139 MRPGEVDGKDYYFVSKEDFLDMIARNELLEYALVYGDYKGIPKRQIREFMAKGYDIVLRV 198

Query: 190 DIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN 249
           D QGA TLR++LG+SAVFVFL AESE+ LVERL++RKTE +E LLVR+ATAREEV+HVKN
Sbjct: 199 DTQGAETLRKVLGNSAVFVFLMAESEVKLVERLIDRKTETKESLLVRVATAREEVKHVKN 258

Query: 250 FDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRSAVI 286
           FDYVVVNA+GKL+SAVKLVES+IDAEKAKV +R+AV+
Sbjct: 259 FDYVVVNADGKLESAVKLVESIIDAEKAKVLRRNAVV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397500|ref|NP_566276.1| guanylate kinase [Arabidopsis thaliana] gi|14190399|gb|AAK55680.1|AF378877_1 AT3g06200/F28L1_14 [Arabidopsis thaliana] gi|17386098|gb|AAL38595.1|AF446862_1 AT3g06200/F28L1_14 [Arabidopsis thaliana] gi|332640839|gb|AEE74360.1| guanylate kinase [Arabidopsis thaliana]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 223/283 (78%), Gaps = 6/283 (2%)

Query: 1   MFRRLSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYS-LSLTPTPLVFSSNIRMNHT 59
           M R+L +SFS  II  P  P  + R+  +  +      YS L +T T +  + N     +
Sbjct: 1   MIRKLCSSFSRSIIF-PNKPIFIPRSFPQPLRHSSALSYSSLKMTDTHIPGNPNSSPIQS 59

Query: 60  QAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSL 119
              P    E LRSLE  LG +F ++P+ PPPN ++IVISGPSGVGKD VI KLRE R+ L
Sbjct: 60  PTKP----ESLRSLEFQLGSSFTADPIIPPPNQIVIVISGPSGVGKDAVINKLREVREGL 115

Query: 120 HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYM 179
           HFVVTATSRPMRPGEV+GKDYFFVS+++FL MV+  ELLEYALVYG+YKGIPKKQI+E+M
Sbjct: 116 HFVVTATSRPMRPGEVDGKDYFFVSRDQFLSMVENEELLEYALVYGEYKGIPKKQIQEFM 175

Query: 180 AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIAT 239
           AKG DIVLRVDIQGA+TLRRILG+SAVF+FL AESE+A+VERL++RKTE++EELLVR+AT
Sbjct: 176 AKGEDIVLRVDIQGAQTLRRILGNSAVFIFLVAESELAMVERLIDRKTESQEELLVRVAT 235

Query: 240 AREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
           AREEV+H+KNFDYVVVNA+G+LD AV  VES+IDAEK+KV QR
Sbjct: 236 AREEVRHLKNFDYVVVNAKGRLDDAVNRVESIIDAEKSKVHQR 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555608|ref|XP_003546122.1| PREDICTED: guanylate kinase-like [Glycine max]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/293 (63%), Positives = 228/293 (77%), Gaps = 16/293 (5%)

Query: 1   MFRRLSTSFSLYIISKPKSPFALQ-RNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHT 59
           MFRRL  + SL  +SKP+S  +L   N   ++KQ Q+      L+P  +   S+ +M   
Sbjct: 8   MFRRLLCT-SLPRLSKPQSSSSLTILNSSLTQKQKQK-----PLSPQTIKSFSSSKMGDA 61

Query: 60  QA---APVNKIE------LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIK 110
           +     P+  +E      LLR+LEAS+G  F S P+ P PNPLIIVISGPSGVGKDT+I 
Sbjct: 62  RRPLFVPIPTLEKAERSDLLRALEASMGSPFSSEPLSPNPNPLIIVISGPSGVGKDTLIA 121

Query: 111 KLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI 170
           +LR+SR +LHFVVTAT+RP RP EV+GKDY FVSKEEFL MV++ ELLEYALVYGDYKG+
Sbjct: 122 RLRDSRRALHFVVTATTRPRRPAEVDGKDYIFVSKEEFLGMVEREELLEYALVYGDYKGV 181

Query: 171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENR 230
           PK+QIRE +A+G D+VLRVDIQGA TL++ LG SAVFVF+AAESEMALVERLV+RKTE  
Sbjct: 182 PKQQIRECLAQGCDVVLRVDIQGAATLKKALGKSAVFVFVAAESEMALVERLVDRKTETV 241

Query: 231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRS 283
           E LLVRI TAREE++HVKNFDYVVVNA+GKLD+AVKL+ES+IDAEKA+V QR+
Sbjct: 242 ESLLVRIGTAREEMKHVKNFDYVVVNAKGKLDNAVKLMESIIDAEKARVSQRT 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6862924|gb|AAF30313.1|AC018907_13 putative guanylate kinase [Arabidopsis thaliana]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 196/218 (89%)

Query: 65  NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT 124
            K E LRSLE  LG +F ++P+ PPPN ++IVISGPSGVGKD VI KLRE R+ LHFVVT
Sbjct: 19  TKPESLRSLEFQLGSSFTADPIIPPPNQIVIVISGPSGVGKDAVINKLREVREGLHFVVT 78

Query: 125 ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYD 184
           ATSRPMRPGEV+GKDYFFVS+++FL MV+  ELLEYALVYG+YKGIPKKQI+E+MAKG D
Sbjct: 79  ATSRPMRPGEVDGKDYFFVSRDQFLSMVENEELLEYALVYGEYKGIPKKQIQEFMAKGED 138

Query: 185 IVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV 244
           IVLRVDIQGA+TLRRILG+SAVF+FL AESE+A+VERL++RKTE++EELLVR+ATAREEV
Sbjct: 139 IVLRVDIQGAQTLRRILGNSAVFIFLVAESELAMVERLIDRKTESQEELLVRVATAREEV 198

Query: 245 QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
           +H+KNFDYVVVNA+G+LD AV  VES+IDAEK+KV QR
Sbjct: 199 RHLKNFDYVVVNAKGRLDDAVNRVESIIDAEKSKVHQR 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829144|ref|XP_002882454.1| hypothetical protein ARALYDRAFT_340799 [Arabidopsis lyrata subsp. lyrata] gi|297328294|gb|EFH58713.1| hypothetical protein ARALYDRAFT_340799 [Arabidopsis lyrata subsp. lyrata]

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 162/214 (75%), Positives = 193/214 (90%)

Query: 65  NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT 124
            K E LRSLE  LG +F ++P+ PPPN ++IVISGPSGVGKD VI KLRE R+ LHFVVT
Sbjct: 19  TKPESLRSLEFQLGSSFTADPIIPPPNQIVIVISGPSGVGKDAVINKLREVREGLHFVVT 78

Query: 125 ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYD 184
           ATSRPMRPGEV+GKDYFFVS+++FL MV+  ELLEYALVYG+YKGIPKKQI+E+MAKG D
Sbjct: 79  ATSRPMRPGEVDGKDYFFVSRDQFLSMVENEELLEYALVYGEYKGIPKKQIQEFMAKGED 138

Query: 185 IVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV 244
           IVLRVDIQGA+TLRRILG+SAVF+FL AESE+A+VERL++RKTE++EELLVR+ATAREEV
Sbjct: 139 IVLRVDIQGAQTLRRILGNSAVFIFLVAESELAMVERLIDRKTESQEELLVRVATAREEV 198

Query: 245 QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK 278
           +H+KNFDYVVVNA+G+LD AV  VES+IDAEK+K
Sbjct: 199 RHLKNFDYVVVNAKGRLDDAVNRVESIIDAEKSK 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499356|ref|NP_001149581.1| guanylate kinase [Zea mays] gi|195628210|gb|ACG35935.1| guanylate kinase [Zea mays]

 Score =  339 bits (870), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 160/218 (73%), Positives = 192/218 (88%)

Query: 65  NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT 124
           +K +L R LEA+LG AF S P+ PPP P+I+VISGPSGVGKD VIK+L+E R+ +HFVVT
Sbjct: 72  DKDQLFRGLEAALGTAFSSEPLAPPPQPMILVISGPSGVGKDAVIKRLQEEREGIHFVVT 131

Query: 125 ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYD 184
           ATSR MRPGEV GKDY+FVSKEEFL M+++ ELLEYALVYG+YKGIPK+QIR+YMAKG D
Sbjct: 132 ATSRAMRPGEVEGKDYYFVSKEEFLTMIEREELLEYALVYGEYKGIPKQQIRDYMAKGCD 191

Query: 185 IVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV 244
           IVLRVDIQGA TLR+ILG+SAVF+FL AESE ALV+RL+ RKTE  + LLVR+ATAREEV
Sbjct: 192 IVLRVDIQGAATLRQILGESAVFIFLVAESEEALVKRLIHRKTETSDMLLVRVATAREEV 251

Query: 245 QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
           +H+KNFDYVVVNA+GKL+ AVK VES+IDAEK+K+ +R
Sbjct: 252 KHMKNFDYVVVNAQGKLEEAVKQVESIIDAEKSKIHKR 289

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2082460	282	AT3G06200 [Arabidopsis thalian	0.972	0.985	0.652	3.6e-89
TIGR_CMR|DET_0035	206	DET_0035 "guanylate kinase" [D	0.667	0.927	0.453	9.3e-43
TIGR_CMR|CHY_1488	204	CHY_1488 "guanylate kinase" [C	0.650	0.911	0.380	1.7e-34
UNIPROTKB|P0A5I4	208	gmk "Guanylate kinase" [Mycoba	0.678	0.932	0.399	4.9e-30
TIGR_CMR|BA_4009	205	BA_4009 "guanylate kinase, put	0.657	0.917	0.373	3.4e-29
TIGR_CMR|ECH_0322	209	ECH_0322 "guanylate kinase" [E	0.653	0.894	0.361	3.4e-29
UNIPROTKB|Q71YI9	205	gmk "Guanylate kinase" [Lister	0.650	0.907	0.352	7.1e-29
SGD|S000002862	187	GUK1 "Guanylate kinase" [Sacch	0.629	0.962	0.410	1.9e-28
TIGR_CMR|APH_0170	210	APH_0170 "guanylate kinase" [A	0.653	0.890	0.345	3.1e-28
TIGR_CMR|CBU_0301	206	CBU_0301 "guanylate kinase" [C	0.629	0.873	0.360	3.1e-28

TAIR|locus:2082460 AT3G06200 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 184/282 (65%), Positives = 223/282 (79%)

Query:     1 MFRRLSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQ 60
             M R+L +SFS  II  P  P  + R+  +  +      YS SL  T      N   +  Q
Sbjct:     1 MIRKLCSSFSRSIIF-PNKPIFIPRSFPQPLRHSSALSYS-SLKMTDTHIPGNPNSSPIQ 58

Query:    61 AAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH 120
             + P  K E LRSLE  LG +F ++P+ PPPN ++IVISGPSGVGKD VI KLRE R+ LH
Sbjct:    59 S-PT-KPESLRSLEFQLGSSFTADPIIPPPNQIVIVISGPSGVGKDAVINKLREVREGLH 116

Query:   121 FVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMA 180
             FVVTATSRPMRPGEV+GKDYFFVS+++FL MV+  ELLEYALVYG+YKGIPKKQI+E+MA
Sbjct:   117 FVVTATSRPMRPGEVDGKDYFFVSRDQFLSMVENEELLEYALVYGEYKGIPKKQIQEFMA 176

Query:   181 KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATA 240
             KG DIVLRVDIQGA+TLRRILG+SAVF+FL AESE+A+VERL++RKTE++EELLVR+ATA
Sbjct:   177 KGEDIVLRVDIQGAQTLRRILGNSAVFIFLVAESELAMVERLIDRKTESQEELLVRVATA 236

Query:   241 REEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
             REEV+H+KNFDYVVVNA+G+LD AV  VES+IDAEK+KV QR
Sbjct:   237 REEVRHLKNFDYVVVNAKGRLDDAVNRVESIIDAEKSKVHQR 278

GO:0004385 "guanylate kinase activity" evidence=IEA;ISS

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

TIGR_CMR|DET_0035 DET_0035 "guanylate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 87/192 (45%), Positives = 134/192 (69%)

Query:    92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
             PL++V+SGPSGVGKD V+ +++E +  L ++VT T+R  R  E  G DY F+   EF Q+
Sbjct:    13 PLLLVVSGPSGVGKDAVLARMKERKLPLAYIVTTTTRTKREKETEGVDYNFIRPAEFQQL 72

Query:   152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
             + +NELLE+A VYG++ G+PK  IR+ +A G+D++++VD+QGA ++++I+  +AVF+FL 
Sbjct:    73 IGQNELLEWANVYGNFYGVPKAPIRQALAHGFDVIVKVDVQGAASIKKIV-PNAVFIFLM 131

Query:   212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
                   L  RL  R TE+ E L  R+ATA  E++ + +FDYVVVN EG++D+AV  + S+
Sbjct:   132 PPDMDELTRRLEHRLTESPESLKRRLATAPLEIEKLPDFDYVVVNPEGEIDNAVSEIMSI 191

Query:   272 IDAEKAKVRQRS 283
             I AE  ++  RS
Sbjct:   192 ISAEHCRINPRS 203

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CHY_1488 CHY_1488 "guanylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 72/189 (38%), Positives = 129/189 (68%)

Query:    93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
             +++V+SGPSG GK T+ +++R+   +L + ++AT+R  R GE++G  Y+F+ +++F +M+
Sbjct:     5 MLVVVSGPSGAGKGTICQEIRKRNPNLFYSISATTREKRVGEIDGVHYYFIDRQQFEKMI 64

Query:   153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
               +E LE+A VYG+Y G PKK + E +A+G D++L +DI+GAR +++   +  VFVF+  
Sbjct:    65 ANDEFLEWADVYGNYYGTPKKPVFEALARGQDVILEIDIKGARQVKKTYPEG-VFVFILP 123

Query:   213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
              S   L ERL +R T+  E ++ R+  A EE+ +   +DY+++N +  L++AV  +E+V+
Sbjct:   124 PSISILEERLRKRGTDKEEIIVKRMQMAWEEIANCDWYDYLILNDD--LETAVNDLEAVL 181

Query:   273 DAEKAKVRQ 281
              AEK K ++
Sbjct:   182 TAEKLKPKR 190

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|P0A5I4 gmk "Guanylate kinase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 81/203 (39%), Positives = 121/203 (59%)

Query:    76 SLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP 132
             S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R  RP
Sbjct:     2 SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 61

Query:   133 GEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVLRVD 190
             GEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++ VD
Sbjct:    62 GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 121

Query:   191 IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250
             + GAR +++ + + AV VFLA  S   L  RL+ R TE  + +  R+ TAR E+    +F
Sbjct:   122 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 180

Query:   251 DYVVVNAEGKLDSA-VKLVESVI 272
             D VVVN   +L+SA  +LV  ++
Sbjct:   181 DKVVVNR--RLESACAELVSLLV 201

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0004385 "guanylate kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0019002 "GMP binding" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_4009 BA_4009 "guanylate kinase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 72/193 (37%), Positives = 118/193 (61%)

Query:    93 LIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
             L+IV+SGPSGVGK TV K+L    D+   + ++ T+R  R GEV+G DYFF  +EEF +M
Sbjct:     7 LLIVLSGPSGVGKGTVRKELFSHEDTRFQYSISVTTRKPREGEVDGVDYFFKEREEFEEM 66

Query:   152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
             +   +LLE+A   G+Y G P   + + + +G D+ L +++QGA  +++   +  VF+FLA
Sbjct:    67 IRNEKLLEWAEFVGNYYGTPIDYVEKTLQEGKDVFLEIEVQGAIQVKKAFPEG-VFIFLA 125

Query:   212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
               S   L  R+V R TE  + +  R+  A+EE+  +  +DYVV N + +L  A + ++++
Sbjct:   126 PPSLSELKNRIVGRGTETEDVIENRLTVAKEEIDMMDAYDYVVENDQVEL--ACERIKAI 183

Query:   272 IDAEKAKVRQRSA 284
             +  E  + R+R A
Sbjct:   184 VVGEHCR-RERVA 195

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|ECH_0322 ECH_0322 "guanylate kinase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 69/191 (36%), Positives = 116/191 (60%)

Query:    93 LIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
             +++VIS PSG GK T+   L  E ++ L   ++ T+R  R GE+NGKDYFFV++ EF+ +
Sbjct:    10 IMLVISSPSGGGKTTISHLLINELQNDLVRSISVTTREPRDGEINGKDYFFVTEPEFINL 69

Query:   152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
              + N++LEYA V+G+Y GIP+K + + +A G  ++  +D QGA  L  I+ +  V +F+ 
Sbjct:    70 CNTNQMLEYAKVFGNYYGIPRKFVTDNIANGVSVLFSIDWQGAFKLIDIMREHVVSIFIL 129

Query:   212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
               S   L  RL  R  E+ + +  R+  A  E+ H   +DYV+VN +  ++ +V  ++ +
Sbjct:   130 PPSMEELQRRLYNRSGES-DVINKRLGEAAFEISHCYRYDYVIVNHD--IEQSVYQIKCI 186

Query:   272 IDAEKAKVRQR 282
               +EK K ++R
Sbjct:   187 FTSEKLKTQRR 197

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|Q71YI9 gmk "Guanylate kinase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 67/190 (35%), Positives = 117/190 (61%)

Query:    93 LIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
             L+IV+SGPSGVGK TV + + ++   S  + ++ T+R  R GE +G DY+F S+E F Q 
Sbjct:     6 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 65

Query:   152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
             +   ++LEYA   G+Y G P + + E +A G DI L +++QGA  +R+ + +  +F+FL 
Sbjct:    66 IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEG-IFIFLT 124

Query:   212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
                   L  R++ R TE+ E +  R+ TA++E++ + ++DY VVN    + +AV+ ++ +
Sbjct:   125 PPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVN--DVVANAVQKIKGI 182

Query:   272 IDAEKAKVRQ 281
             ++ E  K  +
Sbjct:   183 VETEHLKTER 192

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000002862 GUK1 "Guanylate kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 76/185 (41%), Positives = 111/185 (60%)

Query:    95 IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
             IVISGPSG GK T++KKL  E  DS  F V++T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct:     5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 64

Query:   154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
              NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct:    65 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 124

Query:   214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
             S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct:   125 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 182

Query:   272 IDAEK 276
             I AEK
Sbjct:   183 IFAEK 187

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0046037 "GMP metabolic process" evidence=TAS

GO:0004385 "guanylate kinase activity" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

TIGR_CMR|APH_0170 APH_0170 "guanylate kinase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 66/191 (34%), Positives = 114/191 (59%)

Query:    93 LIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
             +I+V+S PSG GK TV  KL E  ++++   V+ T+R  R GE  GKDY+FV +EEFL++
Sbjct:     7 VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 66

Query:   152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
                 E++E+A V+G++ G+P+K + + + KG   +L +D QGA     ++ +  V +F+ 
Sbjct:    67 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 126

Query:   212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
               S   L  RL  R+ ++ E +  R+  A  E+ H + +DYV+VN +  ++     + ++
Sbjct:   127 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 184

Query:   272 IDAEKAKV-RQ 281
             + AE+ K  RQ
Sbjct:   185 LRAEQMKTCRQ 195

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CBU_0301 CBU_0301 "guanylate kinase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 66/183 (36%), Positives = 108/183 (59%)

Query:    94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
             + +IS PSG GK ++++ L ++   +   ++ T+RP RPG+  G DYFF+ +  F  MV 
Sbjct:     6 LFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 65

Query:   154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
             +   LE+A +Y  + G  K  +   +  G D++L +D QGAR +R +    A+ +F+   
Sbjct:    66 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELF-PPALSIFILPP 124

Query:   214 SEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273
             S  AL ERL++R+ ++   +  R+A AREE+ H K FDY+VVN     D AV+ +  +I 
Sbjct:   125 SIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVN--DNFDQAVQNLIHIIS 182

Query:   274 AEK 276
             AE+
Sbjct:   183 AER 185

GO:0004385 "guanylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.766
4th Layer	2.7.4.8	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.102.1	hypothetical protein (223 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.614.1	GMP synthetase (EC-6.3.5.2) (434 aa)				•		•	•		0.970
	estExt_fgenesh4_pg.C_LG_V1144	SubName- Full=Putative uncharacterized protein; (188 aa)						•	•		0.953
	estExt_fgenesh4_pg.C_LG_I0458	hypothetical protein (204 aa)	•					•	•		0.932
	estExt_fgenesh4_pg.C_1270057	adenine phosphoribosyltransferase (EC-2.4.2.7) (183 aa)	•					•	•		0.927
	eugene3.00031452	hypothetical protein (211 aa)	•					•	•		0.927
	estExt_fgenesh4_pg.C_LG_VI1808	adenine phosphoribosyltransferase (EC-2.4.2.7) (192 aa)						•	•		0.921
	grail3.0007027201	adenine phosphoribosyltransferase (EC-2.4.2.7) (192 aa)						•	•		0.920
	fgenesh4_pm.C_LG_V000114	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (817 aa)						•	•		0.917
	estExt_fgenesh4_pg.C_LG_VII0648	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (813 aa)						•	•		0.916
	eugene3.00051017	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (810 aa)						•	•		0.915

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
PRK14738	206	PRK14738, gmk, guanylate kinase; Provisional	1e-81
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	3e-78
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	7e-74
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	6e-69
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	3e-52
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	1e-44
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	5e-42
PRK14737	186	PRK14737, gmk, guanylate kinase; Provisional	5e-37
PLN02772	398	PLN02772, PLN02772, guanylate kinase	4e-22
COG3709	192	COG3709, COG3709, Uncharacterized component of pho	4e-19
TIGR02322	179	TIGR02322, phosphon_PhnN, phosphonate metabolism p	9e-13
PRK10078	186	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; P	3e-07
pfam13207	114	pfam13207, AAA_17, AAA domain	3e-04
cd02019	69	cd02019, NK, Nucleoside/nucleotide kinase (NK) is	0.003

>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional

 Score =  244 bits (625), Expect = 1e-81
 Identities = 101/198 (51%), Positives = 145/198 (73%), Gaps = 1/198 (0%)

Query: 89  PPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEF 148
           P  PL++VISGPSGVGKD V+ ++RE +   HFVVTAT+RP RPGE++G DY FV+ EEF
Sbjct: 10  PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEF 69

Query: 149 LQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFV 208
            +M+ +NELLE+A VYG+Y G+PK  +R+ +A G D++++VD+QGA +++R++ + AVF+
Sbjct: 70  REMISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPE-AVFI 128

Query: 209 FLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLV 268
           FLA  S   L  RL  R+TE+ EEL  R+ATA  E++ +  FDYVVVN E +LD AV  +
Sbjct: 129 FLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQI 188

Query: 269 ESVIDAEKAKVRQRSAVI 286
            ++I AEK++V  R   +
Sbjct: 189 MAIISAEKSRVHPRRIEL 206

Length = 206

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score =  235 bits (603), Expect = 3e-78
 Identities = 86/191 (45%), Positives = 130/191 (68%), Gaps = 4/191 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           L+IV+SGPSG GK T++K L E   +L   V+AT+R  RPGEV+G DYFFVSKEEF +M+
Sbjct: 6   LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMI 65

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
           +  E LE+A V+G+Y G P+  + E +A G D++L +D QGAR +++ + D AV +F+  
Sbjct: 66  ENGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPD-AVSIFILP 124

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L  RL  R T++ E +  R+A AREE+ H   +DYV+VN +  LD+A++ ++++I
Sbjct: 125 PSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEYDYVIVNDD--LDTALEELKAII 182

Query: 273 DAEKAKV-RQR 282
            AE+ +  RQ+
Sbjct: 183 RAERLRRSRQQ 193

Length = 205

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score =  223 bits (571), Expect = 7e-74
 Identities = 85/182 (46%), Positives = 124/182 (68%), Gaps = 3/182 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           L+IVISGPSG GK T++K L E   +L F ++AT+R  RPGEV+G DYFFVSKEEF +M+
Sbjct: 1   LLIVISGPSGAGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMI 60

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
              E LE+A V+G+Y G PK  + E +A G D++L +D+QGAR +++   D AV +F+  
Sbjct: 61  KAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPD-AVSIFILP 119

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L  RL +R T++ E +  R+A A++E+ H   FDYV+VN +  L+ AV+ ++S+I
Sbjct: 120 PSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDYVIVNDD--LEKAVEELKSII 177

Query: 273 DA 274
            A
Sbjct: 178 LA 179

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score =  211 bits (540), Expect = 6e-69
 Identities = 77/188 (40%), Positives = 129/188 (68%), Gaps = 4/188 (2%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
            L+IV+SGPSGVGK T++K L E  D L F V+AT+R  RPGEV+G DYFFV++EEF ++
Sbjct: 4   GLLIVLSGPSGVGKSTLVKALLE-DDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL 62

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           ++++E LE+A  +G+Y G  ++ + + +A+G D++L +D+QGA  +++ + + AV +F+ 
Sbjct: 63  IERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPN-AVSIFIL 121

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L  RL  R T++ E +  R+  A++E+ H   FDYV+VN +  L+ A++ ++S+
Sbjct: 122 PPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEFDYVIVNDD--LEKALEELKSI 179

Query: 272 IDAEKAKV 279
           I AE+ + 
Sbjct: 180 ILAERLRR 187

Length = 191

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score =  166 bits (424), Expect = 3e-52
 Identities = 54/119 (45%), Positives = 82/119 (68%), Gaps = 2/119 (1%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           +IV+SGPSGVGK T++K+L E  D +  F V+ T+R  RPGEV+G DY FVSKEEF +++
Sbjct: 1   LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           +  E LE+A  +G+Y G  K  + E +A+G  ++L +D+QGAR +++     AV +F+ 
Sbjct: 61  ENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKK-SYPDAVSIFIL 118

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score =  149 bits (378), Expect = 1e-44
 Identities = 79/183 (43%), Positives = 107/183 (58%), Gaps = 4/183 (2%)

Query: 94  IIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
            IV+SGPSGVGK  + K L  E  +   + V+ T+RP RPGEV+GKDY FVSKEE    +
Sbjct: 4   PIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDI 63

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
             NE LEYA   G+Y G  K+ I +    G   +L VDIQG + LR+    S + VF+  
Sbjct: 64  SANEFLEYAEFNGNYYGTSKEAIEQIAESGKICILDVDIQGVKQLRKAE-LSPISVFIKP 122

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   L  RL  R TE  E++  R+  A +E QH   FDY++VN +  LD A K ++ ++
Sbjct: 123 PSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQHYALFDYIIVNDD--LDEAYKKLKEIL 180

Query: 273 DAE 275
           +AE
Sbjct: 181 EAE 183

Length = 183

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score =  142 bits (359), Expect = 5e-42
 Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 6/178 (3%)

Query: 101 SGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE 159
           SGVGK T++ +L +   D+   VV+ T+RP RPGEVNG DY FVSKEEF   +     LE
Sbjct: 1   SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60

Query: 160 YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR-RILGDSAVFVFLAAESEMAL 218
           +    G+Y G  K+ IR+   KG   +L +D QG + LR   L    + +F+A  S   L
Sbjct: 61  WGEYEGNYYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQL--YPIVIFIAPPSSEEL 118

Query: 219 VERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK 276
             RL +R TE  E +  R+A A++E Q    FDYV+VN +  L+ A + ++ +++AE+
Sbjct: 119 ERRLRQRGTETSERIQKRLAAAQKEAQEYHLFDYVIVNDD--LEDAYEELKEILEAEQ 174

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional

 Score =  129 bits (326), Expect = 5e-37
 Identities = 60/181 (33%), Positives = 100/181 (55%), Gaps = 2/181 (1%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           P + +IS  +G GK T+I+ L E      F ++ T+R  RPG+  GK YFF++ EEF + 
Sbjct: 4   PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKG 63

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           +   E LE+A V+ +Y G PK  I +   +G   ++ +D+QGA+ ++    +  V +F+ 
Sbjct: 64  IADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIE 123

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             SE    ERL+ R T++ E +  RI     E+     FDY ++N    L+ A+  +E++
Sbjct: 124 PPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIIN--DDLEDAIADLEAI 181

Query: 272 I 272
           I
Sbjct: 182 I 182

Length = 186

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 94.5 bits (235), Expect = 4e-22
 Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSGVGK T+I  L +E      F V+ T+R  R  E +G  Y F  +    + + 
Sbjct: 138 IVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK 197

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
             + LE+A V+G+  G   + +      G   +L +D+QGAR++R    + A+F+F+   
Sbjct: 198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLE-AIFIFICPP 256

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN---FDYVVVN 256
           S   L +RL  R TE  E++  R+  A  E++  K+   FD+++ N
Sbjct: 257 SMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYN 302

Length = 398

>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 11/175 (6%)

Query: 95  IVISGPSGVGKDTVIKKLRE---SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           I + GPSG GKDT++   R     R  LHFV    +RP   G   G+D+  +S+ EF   
Sbjct: 8   IAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTR 64

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
             +         +G   GIP  +I  ++A G  +++          RR      V V + 
Sbjct: 65  AGQGAFALSWQAHGLSYGIP-AEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLV-VCIT 122

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVK 266
           A  E+ L +RL ER  E+REE+L R+  AR         D   ++  G+L+ A +
Sbjct: 123 ASPEV-LAQRLAERGRESREEILARL--ARAARYTAGPGDVTTIDNSGELEDAGE 174

Length = 192

>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 29/193 (15%)

Query: 95  IVISGPSGVGKDTVIKKLRE---SRDSLHF---VVTATSRPMRPGEVNGKDYFFVSKEEF 148
           I + GPSG GKDT++   R        +HF   V+T      RP    G+++  +S EEF
Sbjct: 4   IYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVIT------RPASAGGENHIALSTEEF 57

Query: 149 LQMVDKNELLEYALVY---GDYKGIPKKQIREYMAKGYDIVL---RVDIQGARTLRRILG 202
               D      +AL +   G   GIP  +I +++  G  +V+   R  +  AR     L 
Sbjct: 58  DHREDGG---AFALSWQAHGLSYGIP-AEIDQWLEAGDVVVVNGSRAVLPEARQRYPNL- 112

Query: 203 DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD 262
              + V + A  ++ L +RL  R  E+REE+  R+  AR         D   ++  G L+
Sbjct: 113 ---LVVNITASPDV-LAQRLAARGRESREEIEERL--ARSARFAAAPADVTTIDNSGSLE 166

Query: 263 SAVKLVESVIDAE 275
            A + +  ++  E
Sbjct: 167 VAGETLLRLLRQE 179

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179

>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 16/183 (8%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           +I + GPSG GKD+++  LR+   +   V  A     RP     +++  +S++EF     
Sbjct: 4   LIWLMGPSGSGKDSLLAALRQREQTQLLV--AHRYITRPASAGSENHIALSEQEFFTRAG 61

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGART----LRRILGDSAVFVF 209
           +N         G Y G+   +I  ++  G+D++    + G+R      R     + + V 
Sbjct: 62  QNLFALSWHANGLYYGV-GIEIDLWLHAGFDVL----VNGSRAHLPQARARYQSALLPVC 116

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE 269
           L   S   L +RL  R  EN  E+  R+A A       +  D   +N +G L  +V  + 
Sbjct: 117 LQV-SPEILRQRLENRGRENASEINARLARA----ARYQPQDCHTLNNDGSLRQSVDTLL 171

Query: 270 SVI 272
           +++
Sbjct: 172 TLL 174

Length = 186

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 94  IIVISGPSGVGKDTVIKKLRE-------SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE 146
           II+I+GP G GK T+ KKL E       S D L          +  GE++  D      E
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGL--AELDDGELDDIDIDLELLE 58

Query: 147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRIL 201
           E L     +EL +   V    +    +   E       + L +     R L+R L
Sbjct: 59  EIL-----DELAKQEWVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRL 108

Length = 114

>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 16/33 (48%), Positives = 17/33 (51%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTAT 126
           II I+G SG GK TV KKL E       VV   
Sbjct: 1   IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	100.0
PRK14737	186	gmk guanylate kinase; Provisional	99.98
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.96
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.95
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.95
PRK14738	206	gmk guanylate kinase; Provisional	99.95
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.94
PLN02772	398	guanylate kinase	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.93
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.93
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.93
PRK00300	205	gmk guanylate kinase; Provisional	99.93
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.93
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.92
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.92
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.92
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.91
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.91
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.91
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.9
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.9
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.9
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.9
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.9
COG4987	573	CydC ABC-type transport system involved in cytochr	99.89
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.89
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.89
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.89
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.89
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.89
COG4988	559	CydD ABC-type transport system involved in cytochr	99.88
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.88
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.88
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.88
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.87
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.87
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.87
PLN03232	1495	ABC transporter C family member; Provisional	99.87
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.87
PLN03130	1622	ABC transporter C family member; Provisional	99.87
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.87
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.87
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.87
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.86
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.86
PTZ00243	1560	ABC transporter; Provisional	99.86
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.86
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.86
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.85
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.85
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.85
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.85
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.85
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.85
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.85
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.85
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	99.85
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.84
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.84
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.84
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.84
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.83
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.83
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.83
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.82
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.82
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.82
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.82
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.82
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	99.82
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.82
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.82
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.81
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.81
COG3709	192	Uncharacterized component of phosphonate metabolis	99.81
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.81
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.81
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.81
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.81
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.81
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.81
cd03246	173	ABCC_Protease_Secretion This family represents the	99.8
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.8
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.8
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.8
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.8
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.8
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.8
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.8
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.8
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.8
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.8
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.8
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.8
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.8
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.8
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.79
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.79
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.79
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.79
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.79
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.79
PRK10908	222	cell division protein FtsE; Provisional	99.79
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.79
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.79
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.79
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.79
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.79
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.79
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.79
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.79
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.79
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.79
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.79
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.79
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.79
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.78
COG4181	228	Predicted ABC-type transport system involved in ly	99.78
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.78
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.78
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.78
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.78
COG4559	259	ABC-type hemin transport system, ATPase component	99.78
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.78
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.78
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.78
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.78
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.78
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.78
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.78
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.78
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.78
COG1123	539	ATPase components of various ABC-type transport sy	99.77
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.77
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.77
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.77
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.77
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.77
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.77
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.77
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.77
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.77
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.77
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.77
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.77
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.77
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.77
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.77
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.77
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.77
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.77
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.77
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.77
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.77
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.76
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.76
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.76
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.76
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.76
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.76
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.76
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.76
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.76
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.76
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.76
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.76
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.76
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.76
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.75
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.75
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.75
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.75
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.75
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.75
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.75
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.75
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.75
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.75
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.75
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.75
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.75
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.75
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.75
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.74
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.74
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.74
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.74
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.74
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.74
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.74
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.74
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.74
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.74
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.74
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.73
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.73
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.73
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.73
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.73
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.73
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.73
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.73
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.73
PRK10938	490	putative molybdenum transport ATP-binding protein	99.73
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.73
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.73
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.73
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.73
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.72
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.72
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.72
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.72
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.72
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.72
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.72
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.72
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.72
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.71
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.71
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.71
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.71
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.71
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.71
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.71
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.71
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.71
PLN03232	1495	ABC transporter C family member; Provisional	99.71
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.71
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.71
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.71
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.71
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.71
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.71
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.71
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.71
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.71
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.71
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.71
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.71
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.71
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.71
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.71
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.71
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.71
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.71
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.7
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.7
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.7
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.7
PLN03130	1622	ABC transporter C family member; Provisional	99.7
COG1123	539	ATPase components of various ABC-type transport sy	99.7
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.7
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.7
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.7
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.69
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.69
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.69
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.69
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.69
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.69
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.69
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.69
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.69
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.69
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.69
PRK08356	195	hypothetical protein; Provisional	99.69
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.69
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.69
COG4172	534	ABC-type uncharacterized transport system, duplica	99.69
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.69
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.69
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.69
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.68
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.68
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.68
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.68
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.68
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.68
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.68
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.68
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.68
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.68
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.68
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.67
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.67
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.67
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.67
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.67
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.67
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.67
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.66
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.66
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.66
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.66
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.66
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.66
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.65
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.65
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.65
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.65
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.65
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.65
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.65
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.64
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.64
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.64
PRK11147	635	ABC transporter ATPase component; Reviewed	99.64
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.64
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.64
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.64
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.64
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.63
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.63
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.62
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.62
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.62
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.62
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.62
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.61
PRK13409	590	putative ATPase RIL; Provisional	99.61
PLN03073	718	ABC transporter F family; Provisional	99.61
PLN03211	659	ABC transporter G-25; Provisional	99.61
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.6
PRK10938	490	putative molybdenum transport ATP-binding protein	99.59
PRK11147	635	ABC transporter ATPase component; Reviewed	99.59
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.59
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.59
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.58
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.57
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.57
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.57
PRK13409	590	putative ATPase RIL; Provisional	99.57
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.56
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.56
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.55
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.55
PLN03073	718	ABC transporter F family; Provisional	99.54
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.54
COG4172	534	ABC-type uncharacterized transport system, duplica	99.54
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.53
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.53
PTZ00451	244	dephospho-CoA kinase; Provisional	99.52
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.52
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.5
COG0488	530	Uup ATPase components of ABC transporters with dup	99.49
PLN02422	232	dephospho-CoA kinase	99.49
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.48
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.47
COG0488	530	Uup ATPase components of ABC transporters with dup	99.47
PTZ00243	1560	ABC transporter; Provisional	99.45
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.45
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.44
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.44
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.44
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.43
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.43
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.41
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.39
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.39
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.36
PRK00698	205	tmk thymidylate kinase; Validated	99.35
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.35
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.35
PRK01184	184	hypothetical protein; Provisional	99.35
PLN03140	1470	ABC transporter G family member; Provisional	99.34
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.31
PRK04040	188	adenylate kinase; Provisional	99.31
PRK06762	166	hypothetical protein; Provisional	99.3
COG4178	604	ABC-type uncharacterized transport system, permeas	99.3
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.28
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.26
PRK05480	209	uridine/cytidine kinase; Provisional	99.26
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.26
PLN03140	1470	ABC transporter G family member; Provisional	99.25
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.24
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.23
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.22
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.21
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.2
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.18
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.18
PRK14530	215	adenylate kinase; Provisional	99.16
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.16
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.16
PRK09825	176	idnK D-gluconate kinase; Provisional	99.15
PRK05541	176	adenylylsulfate kinase; Provisional	99.14
PRK14531	183	adenylate kinase; Provisional	99.13
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.12
PRK13973	213	thymidylate kinase; Provisional	99.12
PLN02200	234	adenylate kinase family protein	99.11
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.11
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.1
PRK13808	333	adenylate kinase; Provisional	99.1
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.1
PRK14527	191	adenylate kinase; Provisional	99.09
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.09
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.08
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.07
PRK13946	184	shikimate kinase; Provisional	99.07
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.05
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.04
KOG0062	582	consensus ATPase component of ABC transporters wit	99.03
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.03
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.03
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.03
PRK00279	215	adk adenylate kinase; Reviewed	99.02
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.02
PRK00131	175	aroK shikimate kinase; Reviewed	99.01
PRK08233	182	hypothetical protein; Provisional	99.01
PRK14532	188	adenylate kinase; Provisional	99.0
PRK05057	172	aroK shikimate kinase I; Reviewed	98.99
PLN02674	244	adenylate kinase	98.99
PRK02496	184	adk adenylate kinase; Provisional	98.98
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.98
PRK14526	211	adenylate kinase; Provisional	98.97
PLN02459	261	probable adenylate kinase	98.96
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.96
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.96
PRK04182	180	cytidylate kinase; Provisional	98.96
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.96
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.95
PRK13949	169	shikimate kinase; Provisional	98.95
PRK13948	182	shikimate kinase; Provisional	98.95
PRK13974	212	thymidylate kinase; Provisional	98.95
PLN02924	220	thymidylate kinase	98.95
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.94
PRK14529	223	adenylate kinase; Provisional	98.94
PRK03839	180	putative kinase; Provisional	98.94
PRK03846	198	adenylylsulfate kinase; Provisional	98.93
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.92
PRK14528	186	adenylate kinase; Provisional	98.91
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	98.91
PRK00889	175	adenylylsulfate kinase; Provisional	98.9
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.88
PRK07933	213	thymidylate kinase; Validated	98.88
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.88
PRK13975	196	thymidylate kinase; Provisional	98.87
PRK13947	171	shikimate kinase; Provisional	98.86
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.84
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.84
PRK06696	223	uridine kinase; Validated	98.83
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.82
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.82
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.81
PRK06217	183	hypothetical protein; Validated	98.81
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.8
PRK13976	209	thymidylate kinase; Provisional	98.79
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.79
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.79
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.78
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.77
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.77
PHA02530	300	pseT polynucleotide kinase; Provisional	98.77
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.75
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.74
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.74
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.74
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.73
PRK00625	173	shikimate kinase; Provisional	98.73
PRK03731	171	aroL shikimate kinase II; Reviewed	98.71
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.71
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.71
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.71
PRK11545	163	gntK gluconate kinase 1; Provisional	98.71
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.7
PRK07429	327	phosphoribulokinase; Provisional	98.7
PLN02199	303	shikimate kinase	98.7
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.69
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.69

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=3.9e-33  Score=220.82  Aligned_cols=183  Identities=42%  Similarity=0.735  Sum_probs=174.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|.+++|.||||+|||||+++|.... .+.+++++|||+|+.|+++|.+|+|++.++|..++.++.|+|+..+++|+||+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            49999999999999999999998877 89999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      +...+++.+..|.+++++.+.|.....+..+ .+.+.||+.||+.+.+.+||..|+..+.+.|..|+..+..+......+
T Consensus        82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~-p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~f  160 (191)
T COG0194          82 SREPVEQALAEGKDVILDIDVQGALQVKKKM-PNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEF  160 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEEehHHHHHHHHhC-CCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998 478889999999999999999999999999999999999998888899


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      |.||+|++  ++.++.++..++...+.
T Consensus       161 dyvivNdd--~e~a~~~l~~ii~aer~  185 (191)
T COG0194         161 DYVIVNDD--LEKALEELKSIILAERL  185 (191)
T ss_pred             CEEEECcc--HHHHHHHHHHHHHHHHH
Confidence            99999998  99999999999988743

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.98  E-value=8.9e-31  Score=214.12  Aligned_cols=182  Identities=33%  Similarity=0.597  Sum_probs=168.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|.+++|+||||||||||++.|...++.+.+.+++|||+|+.|+.+|.+|+|++.++|..++.++.|++++.+.+++||+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            48999999999999999999998887777888999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      +.+.+...+..|..++++++.+.+..++..+.+..++||+.+|+.+.+.+|+.+|+..+...+..|+..+..+.++...|
T Consensus        83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~  162 (186)
T PRK14737         83 PKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEF  162 (186)
T ss_pred             cHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence            99999999999999999999999999988764444789999999999999999998878899999999998888877899


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHH
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      |.||+|+  +++++..+|.+++..
T Consensus       163 D~vI~N~--dle~a~~ql~~ii~~  184 (186)
T PRK14737        163 DYKIIND--DLEDAIADLEAIICG  184 (186)
T ss_pred             CEEEECc--CHHHHHHHHHHHHhc
Confidence            9999987  499999999988864

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-30  Score=241.28  Aligned_cols=189  Identities=20%  Similarity=0.275  Sum_probs=156.0

Q ss_pred             chhhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--c
Q 043263           63 PVNKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--V  135 (286)
Q Consensus        63 ~~~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~  135 (286)
                      ...+.|+++||+|.|+.     +|++++++++| |+++||+||||+||||++++|.++|+            |.+|.  +
T Consensus       461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p-Ge~vALVGPSGsGKSTiasLL~rfY~------------PtsG~Ill  527 (716)
T KOG0058|consen  461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP-GEVVALVGPSGSGKSTIASLLLRFYD------------PTSGRILL  527 (716)
T ss_pred             cccceEEEEEeeeecCCCCCchhhcCceeeeCC-CCEEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEEE
Confidence            35678999999999986     79999999999 99999999999999999999999998            88888  8


Q ss_pred             CCcceeeeCHHHHHHHh---hccchh-----hhheecccccCccHHHHHHH------------HhcCCcEEE--------
Q 043263          136 NGKDYFFVSKEEFLQMV---DKNELL-----EYALVYGDYKGIPKKQIREY------------MAKGYDIVL--------  187 (286)
Q Consensus       136 ~g~~~~~~~~~~~~~~i---~~~~~~-----~~~~~~~~~~~~~~~~i~~~------------~~~g~~~v~--------  187 (286)
                      ||.|+..++...++..+   .|...+     .+++.|+.. ..+.+++..+            +++|+++.+        
T Consensus       528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS  606 (716)
T KOG0058|consen  528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS  606 (716)
T ss_pred             CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence            99999999999888875   444432     334444443 4455665544            567777666        


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |||+||++||||++++|.++|+      ||+.+|..+.+.|.+. .+.|...|+||+++       ++.||+|++.++|+
T Consensus       607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLST-------V~~Ad~Ivvi~~G~  679 (716)
T KOG0058|consen  607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLST-------VRHADQIVVIDKGR  679 (716)
T ss_pred             chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhH-------hhhccEEEEEcCCe
Confidence            6899999999999999999999      9999999998888653 44588999999999       79999999999999


Q ss_pred             HHHH--HHHHHHHH
Q 043263          261 LDSA--VKLVESVI  272 (286)
Q Consensus       261 i~~~--~~~l~~~i  272 (286)
                      +.|.  .+++.+.-
T Consensus       680 V~E~G~h~eLl~~~  693 (716)
T KOG0058|consen  680 VVEMGTHDELLSKP  693 (716)
T ss_pred             EEecccHHHHhhCc
Confidence            9776  56665543

>smart00072 GuKc Guanylate kinase homologues

Probab=99.95  E-value=2.8e-26  Score=188.00  Aligned_cols=181  Identities=40%  Similarity=0.625  Sum_probs=164.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +.+++|+||+||||+|+++.|...++ .+..++.+|||+++.|+.+|.+|+|++.++|..++..+.|+++..+.++.|++
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            67899999999999999999988765 68999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      +.+.+.+++..|..++++++.+.+..++... ..+++||+.+++.+.+.+|+.+|+..+...+..|+..+..+......+
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~-~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~f  160 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQ-LYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLF  160 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECHHHHHHHHHhC-CCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence            9999999999999999999999998888765 556899999999999999999998778899999999877665545779


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      |.+|++++  +++++++|.+++...
T Consensus       161 d~~I~n~~--l~~~~~~l~~~i~~~  183 (184)
T smart00072      161 DYVIVNDD--LEDAYEELKEILEAE  183 (184)
T ss_pred             CEEEECcC--HHHHHHHHHHHHHhc
Confidence            99999875  999999999998753

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.95  E-value=1.8e-26  Score=189.08  Aligned_cols=182  Identities=40%  Similarity=0.657  Sum_probs=159.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      ++++++|+||+|||||||++.|...++ .+...+.+|||+|+.|+.+|.+|+|++.++|..++..+.|+++..+.++.||
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            378899999999999999999987665 6889999999999999999999999999999999999999999998899999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      ++.+.+..++.+|..++++++.+.+..++.. ...+++||+.+++.+.+.+|+.+++..+...+..|+.....+......
T Consensus        81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~  159 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNE  159 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEETHHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGG
T ss_pred             hccchhhHhhhcCCcEEEEccHHHHHHHHhc-ccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhc
Confidence            9999999999999999999999999888876 578899999999999999999888766677788888887776665555


Q ss_pred             CcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          250 FDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       250 ~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      +|.||+|++  +++++.+|.++|+..
T Consensus       160 fd~vi~n~~--le~~~~~l~~ii~~~  183 (183)
T PF00625_consen  160 FDYVIVNDD--LEEAVKELKEIIEQE  183 (183)
T ss_dssp             SSEEEECSS--HHHHHHHHHHHHHHH
T ss_pred             CCEEEECcC--HHHHHHHHHHHHHhC
Confidence            999998764  999999999999763

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.95  E-value=2.3e-25  Score=185.57  Aligned_cols=189  Identities=52%  Similarity=0.893  Sum_probs=163.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263           89 PPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        89 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      +.++.+++|+||||||||||++.|......+.+.+.++||+++.|+.+|.++++++.++|..++..+.|+++..++++.|
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y   89 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY   89 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence            33689999999999999999999987666788999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcE-EEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Q 043263          169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAV-FVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV  247 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~-~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~  247 (286)
                      |++.+.+..+++.|..++++++.+.+..++...  |+. ++|+.+++.+.+.+|+..|+..+...+..|+.....+....
T Consensus        90 Gt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~--pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~  167 (206)
T PRK14738         90 GVPKAPVRQALASGRDVIVKVDVQGAASIKRLV--PEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL  167 (206)
T ss_pred             cCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhC--CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999988888765  444 45555677889999999987767788889998876665545


Q ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263          248 KNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV  279 (286)
Q Consensus       248 ~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~  279 (286)
                      ..+|.++++.+++++++.+++.+++...+.+.
T Consensus       168 ~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~~  199 (206)
T PRK14738        168 PEFDYVVVNPEDRLDEAVAQIMAIISAEKSRV  199 (206)
T ss_pred             cCCCEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence            56789999988889999999999999875333

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=5.7e-28  Score=236.10  Aligned_cols=187  Identities=22%  Similarity=0.299  Sum_probs=154.7

Q ss_pred             chhhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--c
Q 043263           63 PVNKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--V  135 (286)
Q Consensus        63 ~~~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~  135 (286)
                      ...+.|+++||+|.|+.     +|+++++.+.+ |+.+||+|||||||||++.+|.++|+            |..|.  +
T Consensus       983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~-GqTvALVG~SGsGKSTvI~LLeRfYd------------p~~G~V~I 1049 (1228)
T KOG0055|consen  983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRA-GQTVALVGPSGSGKSTVISLLERFYD------------PDAGKVKI 1049 (1228)
T ss_pred             cceeEEEEeeeEeeCCCCCCchhhcCCcEEecC-CCEEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEEE
Confidence            35567999999999986     69999999998 99999999999999999999999998            88887  8


Q ss_pred             CCcceeeeCHHHHHHHh---hccchhhh-----heecccccCccHHHHHHH------------HhcCCcEEE--------
Q 043263          136 NGKDYFFVSKEEFLQMV---DKNELLEY-----ALVYGDYKGIPKKQIREY------------MAKGYDIVL--------  187 (286)
Q Consensus       136 ~g~~~~~~~~~~~~~~i---~~~~~~~~-----~~~~~~~~~~~~~~i~~~------------~~~g~~~v~--------  187 (286)
                      ||.|+..++...++..+   .|.+.+.+     ++.+|.. ..+.+++.++            +++|+++.+        
T Consensus      1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred             CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence            99999999999998865   44444333     3344422 2566666655            678888776        


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |||+||++||||++++|.+++|      ||..||..+++.|.+ +.+.|..+|+||+++       +++||.|+|+++|+
T Consensus      1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST-------IqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST-------IQNADVIAVLKNGK 1201 (1228)
T ss_pred             chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh-------hhcCCEEEEEECCE
Confidence            5799999999999999999999      999999999998876 445689999999999       79999999999998


Q ss_pred             HHH--HHHHHHH
Q 043263          261 LDS--AVKLVES  270 (286)
Q Consensus       261 i~~--~~~~l~~  270 (286)
                      +.|  +.++|..
T Consensus      1202 VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1202 VVEQGTHDELLA 1213 (1228)
T ss_pred             EEecccHHHHHh
Confidence            754  4555544

>PLN02772 guanylate kinase

Probab=99.94  E-value=7.2e-25  Score=194.29  Aligned_cols=183  Identities=31%  Similarity=0.469  Sum_probs=164.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      ++++++|+||||||||||++.|...++ .+.+++.+|||+|+.|+.+|.+|+|.+.++|..++.++.|+++..+++++||
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            467999999999999999999988765 5788999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc---
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQH---  246 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~---  246 (286)
                      ++.+.++.++++|..++++.+.|.+..++... ...++||+.+++.+.+.+||..|+..+.+.|..|+..+..+.+.   
T Consensus       214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~  292 (398)
T PLN02772        214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASS-LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKS  292 (398)
T ss_pred             ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999988887765 45688889999999999999999888899999999988665543   


Q ss_pred             cCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ...+|.+|+|++  +++++++|.+++....
T Consensus       293 ~~~fD~vIvNDd--Le~A~~~L~~iL~~~~  320 (398)
T PLN02772        293 SGIFDHILYNDN--LEECYKNLKKLLGLDG  320 (398)
T ss_pred             cCCCCEEEECCC--HHHHHHHHHHHHhhcC
Confidence            347999999885  9999999999987644

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=5e-27  Score=193.64  Aligned_cols=176  Identities=19%  Similarity=0.230  Sum_probs=142.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+++||+|.|+.  +++++++.++. |++++++|||||||||+++|+.+++.            |++|+  ++|+++...
T Consensus         2 I~~~nvsk~y~~~~av~~v~l~I~~-gef~vliGpSGsGKTTtLkMINrLie------------pt~G~I~i~g~~i~~~   68 (309)
T COG1125           2 IEFENVSKRYGNKKAVDDVNLTIEE-GEFLVLIGPSGSGKTTTLKMINRLIE------------PTSGEILIDGEDISDL   68 (309)
T ss_pred             ceeeeeehhcCCceeeeeeeEEecC-CeEEEEECCCCCcHHHHHHHHhcccC------------CCCceEEECCeecccC
Confidence            678999999997  89999999998 99999999999999999999999987            88888  899999988


Q ss_pred             CHHHHHHH----hhccchhhhheeccc------ccCccHHHHHHH---------------HhcCCcEEEEeCHHHHHHHH
Q 043263          144 SKEEFLQM----VDKNELLEYALVYGD------YKGIPKKQIREY---------------MAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 ~~~~~~~~----i~~~~~~~~~~~~~~------~~~~~~~~i~~~---------------~~~g~~~v~~~~~q~v~iar  198 (286)
                      +..+++..    +++..++.|.++..|      +.+.+++.+.+.               ..+-..-++|||.||+.++|
T Consensus        69 d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~R  148 (309)
T COG1125          69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR  148 (309)
T ss_pred             CHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHH
Confidence            88777664    366666655555544      334444443332               23334668899999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERL---VERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl---~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |+..+|+++++      |||-++..+++-+   .+.-+.|...++|+++.+      .+.+|+|.++++|.+.
T Consensus       149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA------~kLadri~vm~~G~i~  215 (309)
T COG1125         149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA------LKLADRIAVMDAGEIV  215 (309)
T ss_pred             HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH------HhhhceEEEecCCeEE
Confidence            99999999998      9998888887654   444556888899999998      6999999999999763

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.93  E-value=9.9e-28  Score=229.58  Aligned_cols=188  Identities=19%  Similarity=0.257  Sum_probs=152.4

Q ss_pred             chhhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263           63 PVNKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN  136 (286)
Q Consensus        63 ~~~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~  136 (286)
                      .....++++||+|.|+.    .|.++++.+++ |+.|||+|+||||||||+|+|.|++.            |..|.  +|
T Consensus       467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~-Ge~vaIvG~SGsGKSTL~KLL~gly~------------p~~G~I~~d  533 (709)
T COG2274         467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPP-GEKVAIVGRSGSGKSTLLKLLLGLYK------------PQQGRILLD  533 (709)
T ss_pred             ccCceEEEEEEEEEeCCCCcchhhceeEEeCC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEEC
Confidence            44667999999999975    68999999999 99999999999999999999999997            88887  89


Q ss_pred             CcceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEEE--------Ee
Q 043263          137 GKDYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIVL--------RV  189 (286)
Q Consensus       137 g~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v~--------~~  189 (286)
                      |.|+..++...+++.+   .|+.++.+.....|+.    ..+.+++.++            ++.|+++.+        +|
T Consensus       534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG  613 (709)
T COG2274         534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG  613 (709)
T ss_pred             CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence            9999999999998875   6666655544444421    2333444333            455665544        68


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |+||+++||+++.+|+++||      ||+.++..+.+.|.+.. +.|.+.|+||+++       ++.||+|+|+++|++.
T Consensus       614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t-------i~~adrIiVl~~Gkiv  686 (709)
T COG2274         614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST-------IRSADRIIVLDQGKIV  686 (709)
T ss_pred             HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH-------hhhccEEEEccCCcee
Confidence            99999999999999999999      99999999999998853 4588999999999       6999999999999874


Q ss_pred             HH--HHHHHH
Q 043263          263 SA--VKLVES  270 (286)
Q Consensus       263 ~~--~~~l~~  270 (286)
                      +.  .+++.+
T Consensus       687 ~~gs~~ell~  696 (709)
T COG2274         687 EQGSHEELLA  696 (709)
T ss_pred             ccCCHHHHHH
Confidence            43  444443

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=3.4e-27  Score=230.77  Aligned_cols=229  Identities=23%  Similarity=0.290  Sum_probs=165.2

Q ss_pred             cccceeeeeeccCCCcccccCCCCChhhHHHHHhhccCCCCCccccccccccccccccchhhHHHhHhHHHHhcc-----
Q 043263            5 LSTSFSLYIISKPKSPFALQRNPIKSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGH-----   79 (286)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-----   79 (286)
                      +...++|.|.++-.+.++.++....  +.+.    .+...|+.-... ..   .....+....++++||+|+|+.     
T Consensus       298 l~g~~sLgqa~p~l~~f~~a~~aa~--~I~~----~i~~~~~i~~~~-~~---~~~~~~~~g~ief~nV~FsYPsRpdv~  367 (1228)
T KOG0055|consen  298 LIGGMSLGQASPHLSAFAKARAAAY--RIFE----TIDRKPSIDPYS-KG---GRVLSSIKGEIEFRNVCFSYPSRPDVK  367 (1228)
T ss_pred             hhhhhhhhccccchHHHhccccchH--HHHH----HhcCCCCCCccc-cc---CCcccccccceEEEEEEecCCCCCcch
Confidence            4455677777777776655554222  2222    222333222211 11   1122345667999999999986     


Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DK  154 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~  154 (286)
                      +|.++++.+++ |++++|+|||||||||++++|.++|+            |..|+  +||.|+..++...++..+   .|
T Consensus       368 Il~g~sl~i~~-G~~valVG~SGsGKST~i~LL~Rfyd------------P~~G~V~idG~di~~~~~~~lr~~iglV~Q  434 (1228)
T KOG0055|consen  368 ILKGVSLKIPS-GQTVALVGPSGSGKSTLIQLLARFYD------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQ  434 (1228)
T ss_pred             hhCCeEEEeCC-CCEEEEECCCCCCHHHHHHHHHHhcC------------CCCceEEEcCccchhcchHHHHhhcCeeee
Confidence            68999999999 99999999999999999999999998            88888  899999988888888765   44


Q ss_pred             cchhhhheecccc-cC---ccHHHHHHH------------HhcCCcEE--------EEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          155 NELLEYALVYGDY-KG---IPKKQIREY------------MAKGYDIV--------LRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       155 ~~~~~~~~~~~~~-~~---~~~~~i~~~------------~~~g~~~v--------~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                      .+.+....+..|+ ||   .+.+++.++            +++|+++.        .|||+||+++||+++++|++++| 
T Consensus       435 ePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD  514 (1228)
T KOG0055|consen  435 EPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD  514 (1228)
T ss_pred             chhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence            4444333333331 22   334444443            45555554        46899999999999999999999 


Q ss_pred             -----EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          210 -----LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                           ||+.++..+++.|.+- .+.|..+|+||+++       ++.||.|+++++|++.|
T Consensus       515 EaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLSt-------IrnaD~I~v~~~G~IvE  567 (1228)
T KOG0055|consen  515 EATSALDAESERVVQEALDKASKGRTTIVVAHRLST-------IRNADKIAVMEEGKIVE  567 (1228)
T ss_pred             CcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhh-------hhccCEEEEEECCEEEE
Confidence                 9999999998888763 44588999999999       68899999999998643

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.93  E-value=5.6e-24  Score=177.35  Aligned_cols=184  Identities=45%  Similarity=0.764  Sum_probs=162.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|++++|+||||||||||+++|++.++.+...+.+++|+|..|+++|.++.+++.+++...+.++.+++...++++.|+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            49999999999999999999999998777888889999999999999999999999999998888898888888999999


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      ..+.+...+..|..++++++.+....++..+. ....|++.+++.+.+.+|+.+|+..+...+..|+..+..+.++...+
T Consensus        84 ~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~  162 (205)
T PRK00300         84 PRSPVEEALAAGKDVLLEIDWQGARQVKKKMP-DAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEY  162 (205)
T ss_pred             cHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhC
Confidence            99999999999999999999988877777664 45777777777999999999998778899999999888777666789


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      |.+++++  +++++..++.+++.....
T Consensus       163 d~vi~n~--~~e~~~~~l~~il~~~~~  187 (205)
T PRK00300        163 DYVIVND--DLDTALEELKAIIRAERL  187 (205)
T ss_pred             CEEEECC--CHHHHHHHHHHHHHHHHh
Confidence            9999855  599999999999998743

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.93  E-value=1.2e-23  Score=171.77  Aligned_cols=179  Identities=47%  Similarity=0.767  Sum_probs=157.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      |++++|+|||||||||+++.|++.++.+...+.+++|+|..|+.+|.++++++.+.+...+..+.+++...+.++.|+..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            67999999999999999999999887777888899999999999999999999999998888888988888889999999


Q ss_pred             HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          172 KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      .+.+.+++.+|..++++++...+..++..+ .....|++.+++.+.+.+|+.+|+..+...+..|+..+..+.++...||
T Consensus        81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d  159 (180)
T TIGR03263        81 KSPVEEALAAGKDVLLEIDVQGARQVKKKF-PDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFD  159 (180)
T ss_pred             HHHHHHHHHCCCeEEEECCHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCc
Confidence            999999999999999999988887776666 3456777777779999999999987788889999998887777778899


Q ss_pred             EEEECCCCCHHHHHHHHHHHHH
Q 043263          252 YVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       252 ~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .+|+|++  +++++++|.+++.
T Consensus       160 ~~i~n~~--~~~~~~~l~~~~~  179 (180)
T TIGR03263       160 YVIVNDD--LEKAVEELKSIIL  179 (180)
T ss_pred             EEEECCC--HHHHHHHHHHHHh
Confidence            9998864  9999999998874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.3e-26  Score=206.12  Aligned_cols=180  Identities=17%  Similarity=0.286  Sum_probs=143.1

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      .++|+++||+|.|..   .++++++.+++ |++++|+||||+||||++++|.++++            ..+|.  +||+|
T Consensus       535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~p-GktvAlVG~SGaGKSTimRlLfRffd------------v~sGsI~iDgqd  601 (790)
T KOG0056|consen  535 QGKIEFSNVTFAYDPGKPVLSDISFTVQP-GKTVALVGPSGAGKSTIMRLLFRFFD------------VNSGSITIDGQD  601 (790)
T ss_pred             CCeEEEEEeEEecCCCCceeecceEEecC-CcEEEEECCCCCchhHHHHHHHHHhh------------ccCceEEEcCch
Confidence            467999999999975   79999999999 99999999999999999999999998            55555  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGYDI--------VLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~~~--------v~~~~~q  192 (286)
                      +..++...++..+   +|+..+.|.+.+-|+ |   ..+.+++.++            .++|+.+        ++||++|
T Consensus       602 Irnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ  681 (790)
T KOG0056|consen  602 IRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ  681 (790)
T ss_pred             HHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence            9999999998875   777766555444442 2   2233443332            3445544        4468999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      |+++||++++.|.++++      ||.++|..++..|.+. .+.|.++++||+++       +-.||.|++.++|.|.|.
T Consensus       682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLST-------ivnAD~ILvi~~G~IvEr  753 (790)
T KOG0056|consen  682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLST-------IVNADLILVISNGRIVER  753 (790)
T ss_pred             hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehh-------eecccEEEEEeCCeEeec
Confidence            99999999977777777      8888888888777764 34588899999999       789999999999987553

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.9e-26  Score=206.81  Aligned_cols=184  Identities=20%  Similarity=0.332  Sum_probs=146.9

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      +..|+++||+|.|+.   +|.++++.+|+ |+.|||+|+|||||||++|+|.++++             .+|+  +||++
T Consensus       349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~k-GekVaIvG~nGsGKSTilr~LlrF~d-------------~sG~I~IdG~d  414 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPK-GEKVAIVGSNGSGKSTILRLLLRFFD-------------YSGSILIDGQD  414 (591)
T ss_pred             CCcEEEEeeEEEeCCCCceecceeEEecC-CCEEEEECCCCCCHHHHHHHHHHHhc-------------cCCcEEECCee
Confidence            345999999999986   79999999998 99999999999999999999999985             3555  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhh-----heecccccCccHHHHHHH------------HhcCCcEE--------EEeCH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEY-----ALVYGDYKGIPKKQIREY------------MAKGYDIV--------LRVDI  191 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~-----~~~~~~~~~~~~~~i~~~------------~~~g~~~v--------~~~~~  191 (286)
                      +..++.+.++..+   +|+..+.|     +..+++... +.+++.++            +++|+.+.        ++||+
T Consensus       415 ik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek  493 (591)
T KOG0057|consen  415 IKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK  493 (591)
T ss_pred             HhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence            9999999999876   66665444     344444332 23333222            45565544        47899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH-
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS-  263 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~-  263 (286)
                      |+++++|++++++++++|      ||..+|..+.+-++. .++.|.+.|.||++.       ++.||.|+++++|++.+ 
T Consensus       494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l-------l~~~DkI~~l~nG~v~e~  566 (591)
T KOG0057|consen  494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL-------LKDFDKIIVLDNGTVKEY  566 (591)
T ss_pred             HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh-------HhcCCEEEEEECCeeEEe
Confidence            999999999999999999      999999999998887 455689999999999       68999999999997633 


Q ss_pred             -HHHHHHH
Q 043263          264 -AVKLVES  270 (286)
Q Consensus       264 -~~~~l~~  270 (286)
                       ..+++..
T Consensus       567 gth~ell~  574 (591)
T KOG0057|consen  567 GTHSELLA  574 (591)
T ss_pred             ccHHHHhh
Confidence             3444444

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=7.1e-26  Score=182.97  Aligned_cols=175  Identities=20%  Similarity=0.217  Sum_probs=128.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+++||+++||.  +|+++++.+.+ |++++|+|||||||||++++|.++-.            |++|.  ++|.++...
T Consensus         3 i~i~~l~K~fg~~~VLkgi~l~v~~-Gevv~iiGpSGSGKSTlLRclN~LE~------------~~~G~I~i~g~~~~~~   69 (240)
T COG1126           3 IEIKNLSKSFGDKEVLKGISLSVEK-GEVVVIIGPSGSGKSTLLRCLNGLEE------------PDSGSITVDGEDVGDK   69 (240)
T ss_pred             EEEEeeeEEeCCeEEecCcceeEcC-CCEEEEECCCCCCHHHHHHHHHCCcC------------CCCceEEECCEeccch
Confidence            678899999997  89999999998 99999999999999999999999875            77887  788655322


Q ss_pred             -CHHHHHHH----hhccchhhhheecccc-------cCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHH
Q 043263          144 -SKEEFLQM----VDKNELLEYALVYGDY-------KGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 -~~~~~~~~----i~~~~~~~~~~~~~~~-------~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iar  198 (286)
                       +...++..    +++-.++.+.++..|.       .+.++++.++.             .......++|||.||++|||
T Consensus        70 ~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR  149 (240)
T COG1126          70 KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR  149 (240)
T ss_pred             hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH
Confidence             22333332    2444445554444442       23344333222             23344678899999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.-+|++++|      |||.....+.+-+.+.  .+.|...++|.+..+      .+.||+|+.+++|.+
T Consensus       150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA------r~VadrviFmd~G~i  214 (240)
T COG1126         150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA------REVADRVIFMDQGKI  214 (240)
T ss_pred             HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH------HHhhheEEEeeCCEE
Confidence            99989999998      7776666665555543  345778889999887      478999999999943

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.91  E-value=5.6e-26  Score=216.62  Aligned_cols=185  Identities=23%  Similarity=0.321  Sum_probs=146.7

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   .++++++.+++ |+++||+|||||||||++++|.++++            |++|+  +||.|+
T Consensus       327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~-Ge~vaiVG~sGsGKSTl~~LL~r~~~------------~~~G~I~idg~dI  393 (567)
T COG1132         327 GSIEFENVSFSYPGKKPVLKDISFSIEP-GEKVAIVGPSGSGKSTLIKLLLRLYD------------PTSGEILIDGIDI  393 (567)
T ss_pred             CeEEEEEEEEEcCCCCccccCceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCEeh
Confidence            45999999999983   79999999998 99999999999999999999999998            77887  789999


Q ss_pred             eeeCHHHHHHHh---hccchhhhheecccc-cC---ccHHHHHHH------------HhcCCcEEEE--------eCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDY-KG---IPKKQIREY------------MAKGYDIVLR--------VDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~~---~~~~~i~~~------------~~~g~~~v~~--------~~~q~  193 (286)
                      ...+.+.++..+   .|+.++.+.++..|+ ++   .+.+++.++            +++|+++.++        ||+||
T Consensus       394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr  473 (567)
T COG1132         394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR  473 (567)
T ss_pred             hhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence            999999888875   566654444444432 12   344444443            3557777775        78999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH--H
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS--A  264 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~--~  264 (286)
                      +++||+++++|+++||      +|+.++..+.+.+.+. .+.|...|+||+++       .+.||+|+|+++|++.+  .
T Consensus       474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlst-------i~~aD~IiVl~~G~i~e~G~  546 (567)
T COG1132         474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST-------IKNADRIIVLDNGRIVERGT  546 (567)
T ss_pred             HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhH-------HHhCCEEEEEECCEEEEecC
Confidence            9999999999999999      9999999998888743 23377779999999       57899999999997522  3


Q ss_pred             HHHHHH
Q 043263          265 VKLVES  270 (286)
Q Consensus       265 ~~~l~~  270 (286)
                      .+++.+
T Consensus       547 h~eLl~  552 (567)
T COG1132         547 HEELLA  552 (567)
T ss_pred             HHHHHH
Confidence            444433

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.91  E-value=9.7e-26  Score=190.21  Aligned_cols=175  Identities=21%  Similarity=0.263  Sum_probs=130.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +++++++.+++ |++++|+||||||||||+|+|++++.            |..|+  ++|+++...
T Consensus         3 L~~~~ls~~y~~~~il~~ls~~i~~-G~i~~iiGpNG~GKSTLLk~l~g~l~------------p~~G~V~l~g~~i~~~   69 (258)
T COG1120           3 LEVENLSFGYGGKPILDDLSFSIPK-GEITGILGPNGSGKSTLLKCLAGLLK------------PKSGEVLLDGKDIASL   69 (258)
T ss_pred             eEEEEEEEEECCeeEEecceEEecC-CcEEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCCchhhc
Confidence            567899999987  89999999998 99999999999999999999999986            88888  899999888


Q ss_pred             CHHHHHHHh---hccc-hhhhhee-----ccc-----ccC-cc---HHHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          144 SKEEFLQMV---DKNE-LLEYALV-----YGD-----YKG-IP---KKQIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~~~~~~i---~~~~-~~~~~~~-----~~~-----~~~-~~---~~~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      +..++.+.+   +|.. ..+...+     ++.     +.. .+   .+.+.++         ..+....++|||+|++.+
T Consensus        70 ~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~i  149 (258)
T COG1120          70 SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLI  149 (258)
T ss_pred             CHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHH
Confidence            888877754   3331 2111111     111     111 11   2223333         344567788999999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++++      ||......+.+-+++   ..+.|...+.|+++.+      .++||+++++++|++
T Consensus       150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A------~ryad~~i~lk~G~i  217 (258)
T COG1120         150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA------ARYADHLILLKDGKI  217 (258)
T ss_pred             HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEECCeE
Confidence            9999988887776      555555555555443   3355788889999988      699999999998865

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.2e-25  Score=196.73  Aligned_cols=178  Identities=21%  Similarity=0.298  Sum_probs=131.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.||.  .++++++.+.. |++++|+|||||||||++++|+|+..            |++|+  ++|.++..+
T Consensus         4 i~l~~v~K~yg~~~~l~~i~l~i~~-Gef~vllGPSGcGKSTlLr~IAGLe~------------~~~G~I~i~g~~vt~l   70 (338)
T COG3839           4 LELKNVRKSFGSFEVLKDVNLDIED-GEFVVLLGPSGCGKSTLLRMIAGLEE------------PTSGEILIDGRDVTDL   70 (338)
T ss_pred             EEEeeeEEEcCCceeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCCC
Confidence            678999999997  79999999998 99999999999999999999999987            88888  889988887


Q ss_pred             CHHHHH--HHhhccchhhhheecccc------cCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEEFL--QMVDKNELLEYALVYGDY------KGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~~~--~~i~~~~~~~~~~~~~~~------~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      ++++-.  ..+++..+..+.+++.|+      .+.+++++.+.             +.+....+++||.||++++|+++.
T Consensus        71 ~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr  150 (338)
T COG3839          71 PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR  150 (338)
T ss_pred             ChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence            776522  122555555555555552      23344443332             555667888999999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          203 DSAVFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      +|.+++|      ||+.....+..   ++.++-+.|...++|+...+      ...+|+|.++++|.+++.
T Consensus       151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA------mtladri~Vm~~G~i~Q~  215 (338)
T COG3839         151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA------MTLADRIVVMNDGRIQQV  215 (338)
T ss_pred             CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH------HhhCCEEEEEeCCeeeec
Confidence            8886555      33333333332   23344445677778877776      589999999999987554

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.4e-25  Score=184.64  Aligned_cols=172  Identities=19%  Similarity=0.231  Sum_probs=125.0

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.+++|++.|+.  +|.++++.+.+ |++++|+||||||||||+++++|+..            |..|+  ++|..+ .-
T Consensus         4 l~i~~v~~~f~~~~vl~~i~L~v~~-GEfvsilGpSGcGKSTLLriiAGL~~------------p~~G~V~~~g~~v-~~   69 (248)
T COG1116           4 LEIEGVSKSFGGVEVLEDINLSVEK-GEFVAILGPSGCGKSTLLRLIAGLEK------------PTSGEVLLDGRPV-TG   69 (248)
T ss_pred             EEEEeeEEEeCceEEeccceeEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCccc-CC
Confidence            567888899986  89999999998 99999999999999999999999987            66666  566544 11


Q ss_pred             CHHHHHHHhhccchhhhheeccccc------CccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYK------GIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      .......++++..++.+.++.+|..      +...+    .+.+.+         ......++||.+||+++||+++.+|
T Consensus        70 p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P  149 (248)
T COG1116          70 PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRP  149 (248)
T ss_pred             CCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCC
Confidence            2222223335555555555555521      22221    222222         2234567889999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          205 AVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      +++++      ||+-+...+.+-+.   ++.+.|...|+|.++.+      +..+|+|+++.++
T Consensus       150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA------v~LsdRivvl~~~  207 (248)
T COG1116         150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEA------VYLADRVVVLSNR  207 (248)
T ss_pred             CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH------HhhhCEEEEecCC
Confidence            88888      88877777766544   34456888999999998      6899999999984

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.90  E-value=2e-25  Score=196.21  Aligned_cols=178  Identities=19%  Similarity=0.227  Sum_probs=129.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +++++++.+.+ |++++|+|||||||||++++|+|+..            |++|+  ++|+++..
T Consensus         5 ~l~i~~v~k~yg~~~av~~isl~i~~-Gef~~lLGPSGcGKTTlLR~IAGfe~------------p~~G~I~l~G~~i~~   71 (352)
T COG3842           5 ALEIRNVSKSFGDFTAVDDISLDIKK-GEFVTLLGPSGCGKTTLLRMIAGFEQ------------PSSGEILLDGEDITD   71 (352)
T ss_pred             eEEEEeeeeecCCeeEEecceeeecC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCC
Confidence            4778999999996  79999999998 99999999999999999999999986            88887  88999887


Q ss_pred             eCHHH--HHHHhhccchhhhheecccc-cCc------cHHHH----HHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263          143 VSKEE--FLQMVDKNELLEYALVYGDY-KGI------PKKQI----REY---------MAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       143 ~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~------~~~~i----~~~---------~~~g~~~v~~~~~q~v~iaral  200 (286)
                      +++..  +...+++..++.|..++.|. |++      ..+++    .++         ..+...-+++||.||+++|||+
T Consensus        72 lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL  151 (352)
T COG3842          72 VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL  151 (352)
T ss_pred             CChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh
Confidence            77654  33345666777777666662 222      22222    222         2233356778999999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          201 LGDSAVFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      ..+|.++++      ||..-++.+..   ++.+..+.|.+.++|+...+      ...+|+|+|+++|++++
T Consensus       152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA------l~msDrI~Vm~~G~I~Q  217 (352)
T COG3842         152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA------LAMSDRIAVMNDGRIEQ  217 (352)
T ss_pred             hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH------hhhccceEEccCCceee
Confidence            966666655      33332223322   22233345677778887776      68999999999998744

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=2.7e-24  Score=176.39  Aligned_cols=178  Identities=22%  Similarity=0.254  Sum_probs=135.3

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +..|++++|+++||.  +++++++.+++ |++++|+|||||||||++|++.|++.            |+.|+  ++|.++
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~-Gei~~iiGgSGsGKStlLr~I~Gll~------------P~~GeI~i~G~~i   72 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPR-GEILAILGGSGSGKSTLLRLILGLLR------------PDKGEILIDGEDI   72 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecC-CcEEEEECCCCcCHHHHHHHHhccCC------------CCCCeEEEcCcch
Confidence            346899999999998  89999999998 99999999999999999999999986            89998  899999


Q ss_pred             eeeCHHHHHHH-------hhccchhhhheecccc-------cCccHHHHHHH--------------HhcCCcEEEEeCHH
Q 043263          141 FFVSKEEFLQM-------VDKNELLEYALVYGDY-------KGIPKKQIREY--------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       141 ~~~~~~~~~~~-------i~~~~~~~~~~~~~~~-------~~~~~~~i~~~--------------~~~g~~~v~~~~~q  192 (286)
                      ...+.++...+       ++++.++....++.|.       ...+++.+++.              ...-..-+++|-..
T Consensus        73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~K  152 (263)
T COG1127          73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRK  152 (263)
T ss_pred             hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHH
Confidence            88887654333       3566665555555552       23444444443              12223457788889


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMA---LVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~---l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++|||+..+|++++|      |||-+...   ++.+|++.-+.|..+++|++.+.      ...||+|+++.+|++
T Consensus       153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~------~~i~Drv~~L~~gkv  224 (263)
T COG1127         153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL------LTIADRVAVLADGKV  224 (263)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH------HhhhceEEEEeCCEE
Confidence            99999999988887777      66665544   44455555556888999999987      578999999988764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.90  E-value=4.3e-25  Score=214.83  Aligned_cols=176  Identities=19%  Similarity=0.255  Sum_probs=140.5

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|+|+.    .|+++++.+++ |+.++|+|+||||||||+++|+|+++            |.+|+  ++|.+
T Consensus       450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~  516 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDGPLILDDVSLQIEP-GEFVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYDGQD  516 (686)
T ss_pred             ceEEEEEEEEEcCCCCccceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEE
Confidence            46899999999952    79999999998 99999999999999999999999997            88887  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc-C--ccHHHHHHH------------HhcCCcE--------EEEeCHHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK-G--IPKKQIREY------------MAKGYDI--------VLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~-~--~~~~~i~~~------------~~~g~~~--------v~~~~~q~  193 (286)
                      +...+.+.++..+   .|+.++.+.+...|+. +  .+.+++.++            ++.|.++        +++||+||
T Consensus       517 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR  596 (686)
T TIGR03797       517 LAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR  596 (686)
T ss_pred             cCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            9888998888765   4554433333333321 1  344444333            3445554        45689999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +++||+++++|+++||      ||+.+++.+.+.|.+.+ .|...++||++.       ...||+|+++++|++.
T Consensus       597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~-~T~IiItHr~~~-------i~~~D~Iivl~~G~iv  663 (686)
T TIGR03797       597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK-VTRIVIAHRLST-------IRNADRIYVLDAGRVV  663 (686)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhC-CeEEEEecChHH-------HHcCCEEEEEECCEEE
Confidence            9999999999999999      88888999999988774 488889999988       5789999999999764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.90  E-value=5e-25  Score=215.26  Aligned_cols=177  Identities=21%  Similarity=0.278  Sum_probs=141.0

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ...++++||+|+|+.    +|+++++.+++ |+.++|+|+||||||||+++|+|+++            |.+|+  ++|.
T Consensus       475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~  541 (710)
T TIGR03796       475 SGYVELRNITFGYSPLEPPLIENFSLTLQP-GQRVALVGGSGSGKSTIAKLVAGLYQ------------PWSGEILFDGI  541 (710)
T ss_pred             CCeEEEEEEEEecCCCCCCcccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            346899999999973    69999999998 99999999999999999999999997            78887  8999


Q ss_pred             ceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEEE--------EeCH
Q 043263          139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIVL--------RVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v~--------~~~~  191 (286)
                      ++...+..+++..+   .|+.++.+.++..|+.    ..+.+++.++            ++.|.++.+        +||+
T Consensus       542 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr  621 (710)
T TIGR03796       542 PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR  621 (710)
T ss_pred             eHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence            99888888888765   4555443433333321    2334444333            344555544        5899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+++||+++++|+++||      ||+.++..+.+.|.+. +.|...++||++.       +..||+|+++++|++.
T Consensus       622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~-~~T~IiitHrl~~-------i~~~D~Iivl~~G~i~  690 (710)
T TIGR03796       622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR-GCTCIIVAHRLST-------IRDCDEIIVLERGKVV  690 (710)
T ss_pred             HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhc-CCEEEEEecCHHH-------HHhCCEEEEEeCCEEE
Confidence            999999999999999999      8888888999998875 4588899999998       5789999999999874

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.4e-24  Score=194.27  Aligned_cols=176  Identities=17%  Similarity=0.233  Sum_probs=140.0

Q ss_pred             HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++++||+|+|++    +|+++++.+.+ |+.|+|+|+|||||||++++|++.++            |++|+  .+|.++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~-GEkvAIlG~SGsGKSTllqLl~~~~~------------~~~G~i~~~g~~~  402 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQ-GEKVAILGRSGSGKSTLLQLLAGAWD------------PQQGSITLNGVEI  402 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecC-CCeEEEECCCCCCHHHHHHHHHhccC------------CCCCeeeECCcCh
Confidence            5899999999986    79999999998 99999999999999999999999997            88888  788888


Q ss_pred             eeeCHHHHHHHh---hccch-----hhhheecccccCccHHHHHHH--------------------HhcCCcEEEEeCHH
Q 043263          141 FFVSKEEFLQMV---DKNEL-----LEYALVYGDYKGIPKKQIREY--------------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~-----~~~~~~~~~~~~~~~~~i~~~--------------------~~~g~~~v~~~~~q  192 (286)
                      ...+.+.+++.+   .|...     +.++...++.. .+.+++.++                    +.++...++||++|
T Consensus       403 ~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r  481 (573)
T COG4987         403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR  481 (573)
T ss_pred             hhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence            877776666544   23222     22333333332 344443333                    44455667789999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      |+++||.++++.+++|+      ||+.++..+.+++.++ .+.|...|+||+.-       .+.||+|+++++|++.+
T Consensus       482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~-------le~~drIivl~~Gkiie  552 (573)
T COG4987         482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG-------LERMDRIIVLDNGKIIE  552 (573)
T ss_pred             HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc-------HhhcCEEEEEECCeeee
Confidence            99999999999999999      9999999999999876 34588899999998       68999999999997643

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.89  E-value=7.1e-25  Score=210.01  Aligned_cols=175  Identities=18%  Similarity=0.234  Sum_probs=137.5

Q ss_pred             HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      .++++||+|.|. .  +|+++++.+++ |++++|+|+||||||||+++|+|++             |.+|+  ++|.++.
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~-G~~vaIvG~SGsGKSTL~~lL~g~~-------------p~~G~I~i~g~~i~  414 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPA-GQRIALVGPSGAGKTSLLNALLGFL-------------PYQGSLKINGIELR  414 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCC-------------CCCcEEEECCEecc
Confidence            589999997553 3  79999999998 9999999999999999999999997             44565  7899998


Q ss_pred             eeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCcEEE--------EeCHHHH
Q 043263          142 FVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYDIVL--------RVDIQGA  194 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~~v~--------~~~~q~v  194 (286)
                      ..+.+.++..+   .|+.++.+.++..|+    ...+.+++.++            +++|+++.+        +||+||+
T Consensus       415 ~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRi  494 (588)
T PRK11174        415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL  494 (588)
T ss_pred             cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence            88888888765   555554433333331    12344444443            455666554        5799999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++||+++++|+++||      ||+.++..+.+.|.+. .+.|...|+||++.       ...||+|+++++|++.
T Consensus       495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~-------i~~aD~Iivl~~G~i~  562 (588)
T PRK11174        495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED-------LAQWDQIWVMQDGQIV  562 (588)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHH-------HHhCCEEEEEeCCeEe
Confidence            999999999999999      8888898998888775 44588899999988       5789999999998764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.4e-24  Score=184.03  Aligned_cols=175  Identities=22%  Similarity=0.294  Sum_probs=132.5

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      |++++|++.|+.       +++++++.+++ |+++||+|.||||||||++++.++-.            |++|.  ++|.
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~-GeI~GIIG~SGAGKSTLiR~iN~Le~------------PtsG~v~v~G~   68 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPK-GEIFGIIGYSGAGKSTLLRLINLLER------------PTSGSVFVDGQ   68 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcC-CcEEEEEcCCCCcHHHHHHHHhccCC------------CCCceEEEcCE
Confidence            456788887763       68899999998 99999999999999999999999865            88888  8999


Q ss_pred             ceeeeCHHHHHHHhh-------ccchhhhheeccc------ccCccHHHHHHH-------------HhcCCcEEEEeCHH
Q 043263          139 DYFFVSKEEFLQMVD-------KNELLEYALVYGD------YKGIPKKQIREY-------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       139 ~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~------~~~~~~~~i~~~-------------~~~g~~~v~~~~~q  192 (286)
                      ++..++...++...+       .-.++...++++|      +.+.+++++++.             ......-+++||+|
T Consensus        69 di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ  148 (339)
T COG1135          69 DLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ  148 (339)
T ss_pred             ecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh
Confidence            998888777766432       2222222333333      234555555443             22233567899999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++||||+..+|.+++.      |||.+...+.+.|.+   +-+.|+..|+|.++..      .+.||+|.|+++|++
T Consensus       149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vv------k~ic~rVavm~~G~l  220 (339)
T COG1135         149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV------KRICDRVAVLDQGRL  220 (339)
T ss_pred             HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHH------HHHhhhheEeeCCEE
Confidence            99999999988888887      888888877776653   4456888899999875      378999999999875

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.89  E-value=1.7e-24  Score=222.95  Aligned_cols=197  Identities=16%  Similarity=0.197  Sum_probs=150.3

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcce-------------------
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLH-------------------  120 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~-------------------  120 (286)
                      ...|+++||+|+|+.     +|+++++.+++ |+++||+|+|||||||++++|.++|+...                   
T Consensus      1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~-G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265       1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDS-KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred             CceEEEEEEEEECCCCCCCccccCeeEEEcC-CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence            346999999999952     69999999998 99999999999999999999999997420                   


Q ss_pred             -----------------------eeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hccchhhhheecccc-c---
Q 043263          121 -----------------------FVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DKNELLEYALVYGDY-K---  168 (286)
Q Consensus       121 -----------------------~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---  168 (286)
                                             ......++.|.+|+  ++|.|+..++...++..+   .|+.++.+.++..|+ +   
T Consensus      1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265       1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred             cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence                                   11112334457888  899999999988888765   566554444333331 1   


Q ss_pred             CccHHHHHHH------------HhcCCcEEE--------EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHH
Q 043263          169 GIPKKQIREY------------MAKGYDIVL--------RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERL  222 (286)
Q Consensus       169 ~~~~~~i~~~------------~~~g~~~v~--------~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl  222 (286)
                      ..+.+++.++            +++|+++.+        +||+||+++|||++++|+++||      ||+.++..+.+.|
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            2345555443            456666555        5799999999999999999999      9999999998888


Q ss_pred             HHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC----CC-H--HHHHHHHH
Q 043263          223 VER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE----GK-L--DSAVKLVE  269 (286)
Q Consensus       223 ~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~----G~-i--~~~~~~l~  269 (286)
                      .+.   .+.|.+.|+||+++       ++.||+|+++++    |+ +  ..+.+++.
T Consensus      1402 ~~~~~~~~~TvIiIaHRlst-------i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1402 VDIKDKADKTIITIAHRIAS-------IKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             HHHhccCCCEEEEEechHHH-------HHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            764   34588999999999       588999999998    77 4  34556554

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.4e-24  Score=188.89  Aligned_cols=180  Identities=19%  Similarity=0.298  Sum_probs=143.8

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ...+.+.+|+|.|..   +|.++++.+++ |+.++++|++|+||||++++|.++|+            +++|.  +||+|
T Consensus       260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~-g~tvAiVg~SG~gKsTI~rllfRFyD------------~~sG~I~id~qd  326 (497)
T COG5265         260 LGAVAFINVSFAYDPRRPILNGISFTIPL-GKTVAIVGESGAGKSTILRLLFRFYD------------VNSGSITIDGQD  326 (497)
T ss_pred             cceEEEEEEEeeccccchhhcCccccccC-ccEEEEEeCCCCcHHHHHHHHHHHhC------------CcCceEEEcchh
Confidence            356889999999986   79999999999 99999999999999999999999998            77776  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhh-eecccccC---ccHHHHHHH------------HhcCCcEEE--------EeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYA-LVYGDYKG---IPKKQIREY------------MAKGYDIVL--------RVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~-~~~~~~~~---~~~~~i~~~------------~~~g~~~v~--------~~~~q  192 (286)
                      +...+.+.++..+   +|+..+.+- .++...|+   .+.+++..+            ++.|+++.+        +|++|
T Consensus       327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq  406 (497)
T COG5265         327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ  406 (497)
T ss_pred             HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence            9999988888876   666554432 22222232   223332222            455655444        68999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      |+++||+++++|++++|      ||..+|..++..|+.- .+.|...|+||+++       +-.||.|||+++|.+.|.
T Consensus       407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst-------i~~adeiivl~~g~i~er  478 (497)
T COG5265         407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST-------IIDADEIIVLDNGRIVER  478 (497)
T ss_pred             HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh-------ccCCceEEEeeCCEEEec
Confidence            99999999999999999      8999898998888763 44588899999999       789999999999988654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.89  E-value=2e-24  Score=210.89  Aligned_cols=178  Identities=22%  Similarity=0.263  Sum_probs=140.1

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ...++++||+|.|+.   +|+++++.+++ |+.++|+|+||||||||+++|+|+++            |.+|+  ++|.+
T Consensus       471 ~~~I~~~~vsf~y~~~~~iL~~isl~i~~-G~~vaIvG~SGsGKSTLlklL~gl~~------------p~~G~I~idg~~  537 (708)
T TIGR01193       471 NGDIVINDVSYSYGYGSNILSDISLTIKM-NSKTTIVGMSGSGKSTLAKLLVGFFQ------------ARSGEILLNGFS  537 (708)
T ss_pred             CCcEEEEEEEEEcCCCCcceeceeEEECC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCcEEEECCEE
Confidence            346899999999973   79999999998 99999999999999999999999997            88887  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCCcEEE--------EeCH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGYDIVL--------RVDI  191 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~~~v~--------~~~~  191 (286)
                      +...+.+.++..+   .|+.++.+.++..|+     ...+.+++.++            ++.|+++.+        +||+
T Consensus       538 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr  617 (708)
T TIGR01193       538 LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK  617 (708)
T ss_pred             HHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence            9888888888764   455443333332221     12344443333            344555544        5799


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+++||+++++|+++||      ||+.+++.+.+.|.+..+.|...++||++.       ...||+|+++++|++.
T Consensus       618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~-------~~~~D~i~~l~~G~i~  687 (708)
T TIGR01193       618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSV-------AKQSDKIIVLDHGKII  687 (708)
T ss_pred             HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHH-------HHcCCEEEEEECCEEE
Confidence            999999999999999999      888888888888887544578888999998       5789999999999764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.89  E-value=1.9e-24  Score=206.78  Aligned_cols=177  Identities=24%  Similarity=0.287  Sum_probs=138.9

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|.|++    .++++++.+++ |+.++|+|+||||||||+++|+|+++            |..|+  ++|.+
T Consensus       340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~-G~~~aIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~  406 (582)
T PRK11176        340 GDIEFRNVTFTYPGKEVPALRNINFKIPA-GKTVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLDGHD  406 (582)
T ss_pred             CeEEEEEEEEecCCCCCccccCceEEeCC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCceEEECCEE
Confidence            35899999999964    69999999998 99999999999999999999999997            77887  88998


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCCcE--------EEEeCH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGYDI--------VLRVDI  191 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~~~--------v~~~~~  191 (286)
                      +...+.+.++..+   +|+.++.+.++..|+     ...+.+++.++            ++.|.++        +++||+
T Consensus       407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr  486 (582)
T PRK11176        407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR  486 (582)
T ss_pred             hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence            8888888777654   555443333222221     11334444333            4455555        456899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+++||+++++|+++|+      ||+.++..+.+.|.+. .+.|...|+||++.       .+.||+|+++++|++.
T Consensus       487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~-------~~~~D~Ii~l~~g~i~  557 (582)
T PRK11176        487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST-------IEKADEILVVEDGEIV  557 (582)
T ss_pred             HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCCEEEEEECCEEE
Confidence            999999999999999999      8999899998888775 34588889999987       5789999999999763

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=7.9e-24  Score=193.38  Aligned_cols=177  Identities=21%  Similarity=0.258  Sum_probs=138.2

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +..+|+++.|+.   .+.++++.+++ |+.++|+|+|||||||++++|+|+++            |+.|+  ++|.+...
T Consensus       321 i~~~~l~~~y~~g~~~l~~l~~t~~~-g~~talvG~SGaGKSTLl~lL~G~~~------------~~~G~I~vng~~l~~  387 (559)
T COG4988         321 ISLENLSFRYPDGKPALSDLNLTIKA-GQLTALVGASGAGKSTLLNLLLGFLA------------PTQGEIRVNGIDLRD  387 (559)
T ss_pred             eeecceEEecCCCCcccCCceeEecC-CcEEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCccccc
Confidence            345599999975   68999999998 99999999999999999999999986            77887  89999999


Q ss_pred             eCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHHH-----------hcCCcE--------EEEeCHHHHHH
Q 043263          143 VSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREYM-----------AKGYDI--------VLRVDIQGART  196 (286)
Q Consensus       143 ~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~~-----------~~g~~~--------v~~~~~q~v~i  196 (286)
                      ++.+.+++.+   .|..++...+...|+    ...+++++.+++           ++|.++        +++||.||+++
T Consensus       388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaL  467 (559)
T COG4988         388 LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLAL  467 (559)
T ss_pred             cCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHH
Confidence            9999988865   455444333333332    124455555442           224444        44579999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      ||+++.++++++|      ||..+|+.+.+.|.+.. +.|...++||+..       ...+|+|+++++|++.+.
T Consensus       468 ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~-------~~~~D~I~vld~G~l~~~  535 (559)
T COG4988         468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLED-------AADADRIVVLDNGRLVEQ  535 (559)
T ss_pred             HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH-------HhcCCEEEEecCCceecc
Confidence            9999988888888      89988998888887653 3477888999999       589999999999987554

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.88  E-value=2.1e-24  Score=210.35  Aligned_cols=178  Identities=18%  Similarity=0.225  Sum_probs=139.7

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|+|+.    .|+++++.+++ |+.++|+|+||||||||+++|+|+++            |.+|+  ++|.+
T Consensus       462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~-G~~iaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~  528 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETPALDNVSLTIRP-GEKVAIIGRIGSGKSTLLKLLLGLYQ------------PTEGSVLLDGVD  528 (694)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEE
Confidence            45899999999963    69999999998 99999999999999999999999997            78887  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEE--------EEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIV--------LRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v--------~~~~~q  192 (286)
                      +...+...++..+   .|+.++.+.++..|+.    ..+.+++.++            ++.|.++.        ++||+|
T Consensus       529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ  608 (694)
T TIGR03375       529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ  608 (694)
T ss_pred             hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence            8888888887764   4554433333333321    1334443333            34455544        467999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      |+++||+++.+|+++|+      ||+.++..+.+.|.+. .+.|...|+||++.       ...||+|+++++|++.+
T Consensus       609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~-------~~~~D~iivl~~G~i~e  679 (694)
T TIGR03375       609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL-------LDLVDRIIVMDNGRIVA  679 (694)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------HHhCCEEEEEeCCEEEe
Confidence            99999999999999999      8888888898888765 34588889999998       57899999999998743

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.88  E-value=3.5e-24  Score=208.80  Aligned_cols=178  Identities=21%  Similarity=0.275  Sum_probs=135.3

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      ...++++||+|.|+.     +|+++++.+++ |++++|+|||||||||++++|.|+++            |.+|+  +||
T Consensus       476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~-Ge~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg  542 (711)
T TIGR00958       476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHP-GEVVALVGPSGSGKSTVAALLQNLYQ------------PTGGQVLLDG  542 (711)
T ss_pred             CCeEEEEEEEEECCCCCCCccccCceEEEcC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEECC
Confidence            345899999999963     69999999998 99999999999999999999999997            78887  899


Q ss_pred             cceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcE--------EEEeC
Q 043263          138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDI--------VLRVD  190 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~--------v~~~~  190 (286)
                      .++...+...++..+   .|+.++.+..+..|+.    ..+.+++.++            +++|.++        +++||
T Consensus       543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ  622 (711)
T TIGR00958       543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ  622 (711)
T ss_pred             EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence            998888887777654   4544433333333211    1234444333            3445544        44689


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      +||+++||+++++|+++|+      ||+.+++.+.+ .....+.|...|+||++.       ...||+|+++++|++.+
T Consensus       623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~~-------i~~aD~IivL~~G~ive  693 (711)
T TIGR00958       623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLST-------VERADQILVLKKGSVVE  693 (711)
T ss_pred             HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHHH-------HHhCCEEEEEECCEEEE
Confidence            9999999999999999999      78777777766 333334588889999988       57899999999998743

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.88  E-value=1.3e-23  Score=173.99  Aligned_cols=172  Identities=22%  Similarity=0.259  Sum_probs=121.7

Q ss_pred             HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +++||++.|+.      +|.++++.+.+ |++++|+||||||||||+++|.++..            |+.|.  ++|.++
T Consensus         3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~-Ge~vaI~GpSGSGKSTLLniig~ld~------------pt~G~v~i~g~d~   69 (226)
T COG1136           3 ELKNVSKIYGLGGEKVEALKDVNLEIEA-GEFVAIVGPSGSGKSTLLNLLGGLDK------------PTSGEVLINGKDL   69 (226)
T ss_pred             EEeeeEEEeccCCcceEecccceEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEc
Confidence            35677777753      68999999998 99999999999999999999999876            77887  889888


Q ss_pred             eeeCHHHHHHH--------hhccchhhhheecccc------cCccH----HHHHHHH---------h-cCCcEEEEeCHH
Q 043263          141 FFVSKEEFLQM--------VDKNELLEYALVYGDY------KGIPK----KQIREYM---------A-KGYDIVLRVDIQ  192 (286)
Q Consensus       141 ~~~~~~~~~~~--------i~~~~~~~~~~~~~~~------~~~~~----~~i~~~~---------~-~g~~~v~~~~~q  192 (286)
                      ...+..+....        +++..++++..+..|.      .+...    +.+...+         . .....+++||.|
T Consensus        70 ~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ  149 (226)
T COG1136          70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ  149 (226)
T ss_pred             CcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHH
Confidence            77775543322        1334444444333332      12221    1112211         1 223467899999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |+++|||++.+|.+++.      ||..+.+.+++-+.+..   +.+..+++|+...+       ..||++|.+.+|.
T Consensus       150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-------~~~dr~i~l~dG~  219 (226)
T COG1136         150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-------KYADRVIELKDGK  219 (226)
T ss_pred             HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-------HhCCEEEEEeCCe
Confidence            99999999966666666      66666777777666542   34778889988874       7999999999987

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.87  E-value=6.8e-24  Score=203.33  Aligned_cols=177  Identities=15%  Similarity=0.198  Sum_probs=137.6

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   +++++++.+++ |++++|+|+||||||||+++|+|+++            |..|.  ++|.++
T Consensus       339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~-Ge~iaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg~~i  405 (592)
T PRK10790        339 GRIDIDNVSFAYRDDNLVLQNINLSVPS-RGFVALVGHTGSGKSTLASLLMGYYP------------LTEGEIRLDGRPL  405 (592)
T ss_pred             CeEEEEEEEEEeCCCCceeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEh
Confidence            35899999999964   79999999998 99999999999999999999999997            77887  799998


Q ss_pred             eeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHH------------HhcCCcE--------EEEeCHHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREY------------MAKGYDI--------VLRVDIQGA  194 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~------------~~~g~~~--------v~~~~~q~v  194 (286)
                      ...+.+.+++.+   +|+..+.+.++..|+.   ..+.+++.++            +++|.++        +++||+||+
T Consensus       406 ~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi  485 (592)
T PRK10790        406 SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL  485 (592)
T ss_pred             hhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            888888888765   4544433222222211   2334444333            3455555        446899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++||+++.+|+++|+      ||+.+++.+.+.|.+. ...|...++||++.       ...||+|+++++|++.
T Consensus       486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~-------l~~~D~ii~l~~G~i~  553 (592)
T PRK10790        486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST-------IVEADTILVLHRGQAV  553 (592)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCCEEEEEECCEEE
Confidence            999999999999998      8888888888888765 34578888999987       5789999999998753

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=4.2e-23  Score=169.00  Aligned_cols=189  Identities=17%  Similarity=0.185  Sum_probs=131.1

Q ss_pred             HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      .|+++||++.|++   +|.++++.+++ |++|+|+|+||||||||+++|.++.+            |..|+  ++|.++.
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~-GE~VaiIG~SGaGKSTLLR~lngl~d------------~t~G~i~~~g~~i~   69 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQ-GEMVAIIGPSGAGKSTLLRSLNGLVD------------PTSGEILFNGVQIT   69 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCC-CcEEEEECCCCCcHHHHHHHHhcccC------------CCcceEEecccchh
Confidence            4678999999943   89999999998 99999999999999999999999887            77777  6777777


Q ss_pred             eeCHHHHHHHh-------hccchhhhheeccc--------------ccC-ccHHHHHH---H---------HhcCCcEEE
Q 043263          142 FVSKEEFLQMV-------DKNELLEYALVYGD--------------YKG-IPKKQIRE---Y---------MAKGYDIVL  187 (286)
Q Consensus       142 ~~~~~~~~~~i-------~~~~~~~~~~~~~~--------------~~~-~~~~~i~~---~---------~~~g~~~v~  187 (286)
                      .....+++...       ++..++....++.|              +.+ .++++-..   +         .-...+.++
T Consensus        70 ~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LS  149 (258)
T COG3638          70 KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLS  149 (258)
T ss_pred             ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence            66666555543       22232222222111              111 12222111   1         223346788


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +||.||++|||+++.+|.+++-      |||.+.+.+++-|+   +..+.|...-.|.++.+      .++||+||-+.+
T Consensus       150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA------~~Y~~Riigl~~  223 (258)
T COG3638         150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA------KKYADRIIGLKA  223 (258)
T ss_pred             cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH------HHHHhhheEecC
Confidence            9999999999999987777766      89888887777655   34455666668999887      478888887777


Q ss_pred             CCH------HHHHHHHHHHHHH
Q 043263          259 GKL------DSAVKLVESVIDA  274 (286)
Q Consensus       259 G~i------~~~~~~l~~~i~~  274 (286)
                      |++      .++-++....++.
T Consensus       224 G~ivfDg~~~el~~~~~~~iYg  245 (258)
T COG3638         224 GRIVFDGPASELTDEALDEIYG  245 (258)
T ss_pred             CcEEEeCChhhhhHHHHHHHhc
Confidence            753      4454444444443

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.87  E-value=8.6e-23  Score=161.74  Aligned_cols=175  Identities=20%  Similarity=0.237  Sum_probs=124.9

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      |.++||++.|+.   +|.++++.+++ |+++.|+|||||||||++|+|.+...            |+.|+  ++|.|+..
T Consensus         2 I~f~~V~k~Y~~g~~aL~~vs~~i~~-Gef~fl~GpSGAGKSTllkLi~~~e~------------pt~G~i~~~~~dl~~   68 (223)
T COG2884           2 IRFENVSKAYPGGREALRDVSFHIPK-GEFVFLTGPSGAGKSTLLKLIYGEER------------PTRGKILVNGHDLSR   68 (223)
T ss_pred             eeehhhhhhcCCCchhhhCceEeecC-ceEEEEECCCCCCHHHHHHHHHhhhc------------CCCceEEECCeeccc
Confidence            578999999986   79999999998 99999999999999999999998865            77887  77888766


Q ss_pred             eCHHHHHHH-------hhccchhhhheecccc------cCccHHHHHHH-------------HhcCCcEEEEeCHHHHHH
Q 043263          143 VSKEEFLQM-------VDKNELLEYALVYGDY------KGIPKKQIREY-------------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       143 ~~~~~~~~~-------i~~~~~~~~~~~~~~~------~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~i  196 (286)
                      +...++-.+       +++..++.+..++.|.      .+....++++.             ...-...+++|+.||++|
T Consensus        69 l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaI  148 (223)
T COG2884          69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAI  148 (223)
T ss_pred             ccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHH
Confidence            554443222       2444555555555552      24444444332             122236678999999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |||++..|.++|-      ||++....+++-+.+  +.+.|..+.+|..+..      -..-.+++.+++|++
T Consensus       149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv------~~~~~rvl~l~~Grl  215 (223)
T COG2884         149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV------NRMRHRVLALEDGRL  215 (223)
T ss_pred             HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH------HhccCcEEEEeCCEE
Confidence            9999977777776      888766666665554  2344666678877653      245567777888865

>PLN03232 ABC transporter C family member; Provisional

Probab=99.87  E-value=6.4e-24  Score=220.14  Aligned_cols=178  Identities=14%  Similarity=0.170  Sum_probs=141.5

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ...|+++||+|+|+.    +|+++++.+++ |+.|||+|++||||||++++|.++++            |.+|+  +||.
T Consensus      1232 ~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~-GekvaIVG~SGSGKSTL~~lL~rl~~------------p~~G~I~IdG~ 1298 (1495)
T PLN03232       1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSP-SEKVGVVGRTGAGKSSMLNALFRIVE------------LEKGRIMIDDC 1298 (1495)
T ss_pred             CCcEEEEEEEEEECCCCCcccccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCc------------CCCceEEECCE
Confidence            346999999999942    69999999998 99999999999999999999999997            78888  8999


Q ss_pred             ceeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHH------------HhcCCcEEE--------EeCHH
Q 043263          139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREY------------MAKGYDIVL--------RVDIQ  192 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~------------~~~g~~~v~--------~~~~q  192 (286)
                      |+..++.+.++..+   +|+.++.+.++..|+.   ..+.+++.++            ++.|.++.+        +||+|
T Consensus      1299 di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232       1299 DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred             EhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence            99988988888765   5665544444433321   2344554444            234555444        57999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++.+||+++++|+++|+      ||+.++..+.+.|++. .+.|...|+||+++       +..||+|+++++|++.
T Consensus      1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t-------i~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232       1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT-------IIDCDKILVLSSGQVL 1448 (1495)
T ss_pred             HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH-------HHhCCEEEEEECCEEE
Confidence            99999999999999998      8888888888888765 34588899999999       5789999999998763

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.87  E-value=1.2e-23  Score=200.56  Aligned_cols=178  Identities=19%  Similarity=0.266  Sum_probs=138.2

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|.|+.    .|+++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.+
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~-G~~~aivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i~g~~  403 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKA-GEKVALLGRTGCGKSTLLQLLTRAWD------------PQQGEILLNGQP  403 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEE
Confidence            45899999999953    69999999998 99999999999999999999999997            77887  88998


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHHH-----------hcCCcE--------EEEeCHHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREYM-----------AKGYDI--------VLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~~-----------~~g~~~--------v~~~~~q~  193 (286)
                      +...+.+.++..+   .|+.++.+.....|+.    ..+.+++.+++           ++|+++        +++||+||
T Consensus       404 i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR  483 (574)
T PRK11160        404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR  483 (574)
T ss_pred             hhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence            8888888877654   4554443333333321    23444443331           334444        45689999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      +++||+++.+|+++|+      ||+.+++.+.+.|.+. .+.|...++||++.       ...||+|+++++|++.+
T Consensus       484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~-------~~~~d~i~~l~~G~i~~  553 (574)
T PRK11160        484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTG-------LEQFDRICVMDNGQIIE  553 (574)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhH-------HHhCCEEEEEeCCeEEE
Confidence            9999999999999999      8888888888888765 34477888999988       46799999999997643

>PLN03130 ABC transporter C family member; Provisional

Probab=99.87  E-value=9.1e-24  Score=219.44  Aligned_cols=178  Identities=15%  Similarity=0.177  Sum_probs=142.4

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .+.|+++||+|+|..    +|+++++.+++ |+.|||+|++|||||||+++|.++++            |.+|+  +||.
T Consensus      1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~-GekVaIVGrSGSGKSTLl~lL~rl~~------------p~~G~I~IDG~ 1301 (1622)
T PLN03130       1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISP-SEKVGIVGRTGAGKSSMLNALFRIVE------------LERGRILIDGC 1301 (1622)
T ss_pred             CCcEEEEEEEEEeCCCCCceecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCE
Confidence            356999999999953    69999999998 99999999999999999999999997            77887  8999


Q ss_pred             ceeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHH------------HhcCCcEEE--------EeCHH
Q 043263          139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREY------------MAKGYDIVL--------RVDIQ  192 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~------------~~~g~~~v~--------~~~~q  192 (286)
                      |+..++...++..+   +|+.++...++..|+.   ..+.+++.++            ++.|.++.+        +||+|
T Consensus      1302 dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130       1302 DISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred             ecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence            99999999988765   6665544444433321   2344555444            234555444        57999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++++||+++++|+++||      ||..++..+.+.|++. .+.|...|+||+++       +..||+|+|+++|++.
T Consensus      1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t-------I~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130       1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT-------IIDCDRILVLDAGRVV 1451 (1622)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH-------HHhCCEEEEEECCEEE
Confidence            99999999999999999      8888888888888764 34588899999999       5789999999999764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.87  E-value=7.5e-23  Score=163.50  Aligned_cols=174  Identities=17%  Similarity=0.179  Sum_probs=123.2

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++.+++++|+.   .+.++++.... |+++||+|+|||||||++++|+.++.            |++|.  ++|.|...
T Consensus         2 l~v~~l~K~y~~~v~AvrdVSF~ae~-Gei~GlLG~NGAGKTT~LRmiatlL~------------P~~G~v~idg~d~~~   68 (245)
T COG4555           2 LEVTDLTKSYGSKVQAVRDVSFEAEE-GEITGLLGENGAGKTTLLRMIATLLI------------PDSGKVTIDGVDTVR   68 (245)
T ss_pred             eeeeehhhhccCHHhhhhheeEEecc-ceEEEEEcCCCCCchhHHHHHHHhcc------------CCCceEEEeeccccc
Confidence            456788999986   67888998887 99999999999999999999999987            77777  77776643


Q ss_pred             eCHHHHHHHh----------hccchhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHH
Q 043263          143 VSKEEFLQMV----------DKNELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       143 ~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iara  199 (286)
                       .+...+..+          ..-...+|..+++.+++....+++..             +.+...-++.|.+|++.+|||
T Consensus        69 -~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARA  147 (245)
T COG4555          69 -DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARA  147 (245)
T ss_pred             -ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHH
Confidence             333333322          11233567778887777665543332             333344466788899999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVERKTENR--EELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~--~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++|.++||      ||..+...+.+-+.+..+...  ..-+|.+...      -..||+||++.+|.+
T Consensus       148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev------ealCDrvivlh~Gev  211 (245)
T COG4555         148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV------EALCDRVIVLHKGEV  211 (245)
T ss_pred             HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH------HHhhheEEEEecCcE
Confidence            9999999988      555555555555555433333  3336666653      258999999998854

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.87  E-value=1.4e-22  Score=181.59  Aligned_cols=204  Identities=19%  Similarity=0.265  Sum_probs=149.4

Q ss_pred             ChhhHHHHHhhccCCCCCccccccccccccccccchhhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCC
Q 043263           29 KSEKQYQRFHYSLSLTPTPLVFSSNIRMNHTQAAPVNKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVG  104 (286)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsG  104 (286)
                      .+...|+|....+...|....-        -.-+..+..+.++++++.-++    ++.++++.+.+ |+.++|+||||||
T Consensus       304 ~Ar~s~~Rl~~lL~~~p~~~~~--------m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~-G~~lgIIGPSgSG  374 (580)
T COG4618         304 AARQSYKRLNELLAELPAAAER--------MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQA-GEALGIIGPSGSG  374 (580)
T ss_pred             HHHHHHHHHHHHHHhCccccCC--------CCCCCCCceeeEeeeeecCCCCCCcceecceeEecC-CceEEEECCCCcc
Confidence            3567788887777666543311        011123456777888775544    68999999998 9999999999999


Q ss_pred             HHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hcc------chhhhheecccccCccHH
Q 043263          105 KDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKK  173 (286)
Q Consensus       105 KSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~  173 (286)
                      ||||+|+|.|...            |..|.  +||-++...+++++.+.+   +|+      ++.+|...++.-  .+.+
T Consensus       375 KSTLaR~lvG~w~------------p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~--~d~~  440 (580)
T COG4618         375 KSTLARLLVGIWP------------PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE--ADPE  440 (580)
T ss_pred             HHHHHHHHHcccc------------cCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc--CCHH
Confidence            9999999999987            66665  899999999999998876   332      334444444321  1222


Q ss_pred             HHH------------HHHhcCCcEEE--------EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH---H
Q 043263          174 QIR------------EYMAKGYDIVL--------RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV---E  224 (286)
Q Consensus       174 ~i~------------~~~~~g~~~v~--------~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~  224 (286)
                      .+-            -.+++||++.+        +||+||+++||++|++|.++|+      ||...|..+.+.|.   +
T Consensus       441 kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~  520 (580)
T COG4618         441 KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA  520 (580)
T ss_pred             HHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH
Confidence            222            22677877665        5899999999999999988888      78877888877665   3


Q ss_pred             hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          225 RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       225 r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      ++. +...|+||.+.       +..+|+|.++++|++..
T Consensus       521 rG~-~vvviaHRPs~-------L~~~Dkilvl~~G~~~~  551 (580)
T COG4618         521 RGG-TVVVIAHRPSA-------LASVDKILVLQDGRIAA  551 (580)
T ss_pred             cCC-EEEEEecCHHH-------HhhcceeeeecCChHHh
Confidence            443 78888999998       68999999999998754

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.87  E-value=2.5e-20  Score=153.03  Aligned_cols=179  Identities=23%  Similarity=0.334  Sum_probs=138.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      |++++|+||||||||||+++|++.+. .+......+++.+.   ..+.++.+...+++..++..+.+.+.+.++++.||+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS---AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc---hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            68999999999999999999998764 33333344444333   224566778888888888888887778899999999


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      +. .+.+.+..|..++++|..+.....+..++.+..+|+|+++ .+.+.+||..|++.+.+.+..|+..+.    ....+
T Consensus        79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~~~a  152 (186)
T PRK10078         79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRLENRGRENASEINARLARAA----RYQPQ  152 (186)
T ss_pred             cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHHhCCCCHHHHHHHHHHhh----hhccC
Confidence            98 5888999999989988876655555666566677888875 889999999887767777888886532    12358


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAEKAKV  279 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~  279 (286)
                      |.+++++++++++++++|.+++..-+...
T Consensus       153 d~~vi~~~~s~ee~~~~i~~~l~~~~~~~  181 (186)
T PRK10078        153 DCHTLNNDGSLRQSVDTLLTLLHLSQKEK  181 (186)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence            87777888899999999999987665443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.86  E-value=1.8e-23  Score=217.15  Aligned_cols=178  Identities=13%  Similarity=0.138  Sum_probs=144.2

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .+.|+++||+++|+.    +|+++++.+++ |+.|||+|++|||||||+++|.++++            |.+|+  +||.
T Consensus      1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~-GekiaIVGrTGsGKSTL~~lL~rl~~------------~~~G~I~IdG~ 1348 (1522)
T TIGR00957      1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHG-GEKVGIVGRTGAGKSSLTLGLFRINE------------SAEGEIIIDGL 1348 (1522)
T ss_pred             CCcEEEEEEEEEeCCCCcccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcc------------CCCCeEEECCE
Confidence            356999999999963    69999999998 99999999999999999999999997            77887  8999


Q ss_pred             ceeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH------------hcCCcEEE--------EeCHH
Q 043263          139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM------------AKGYDIVL--------RVDIQ  192 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~~~v~--------~~~~q  192 (286)
                      |+..++...++..+   +|+.++...++..|+.   ..+.+++.+++            +.|.++.+        +||+|
T Consensus      1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957      1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred             EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence            99999999988865   6666655444444432   24555555442            34555544        47999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++.+||+++++|+++|+      ||..++..+.+.|++. .+.|...|+||+++       +..||+|+|+++|++.
T Consensus      1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t-------i~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957      1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT-------IMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEEE
Confidence            99999999999999999      8888888888888764 44588899999999       5789999999999764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.86  E-value=3.9e-23  Score=197.91  Aligned_cols=177  Identities=21%  Similarity=0.308  Sum_probs=136.0

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|.  ++|.++
T Consensus       333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~-G~~v~IvG~sGsGKSTLl~lL~gl~~------------p~~G~I~i~g~~i  399 (588)
T PRK13657        333 GAVEFDDVSFSYDNSRQGVEDVSFEAKP-GQTVAIVGPTGAGKSTLINLLQRVFD------------PQSGRILIDGTDI  399 (588)
T ss_pred             CeEEEEEEEEEeCCCCceecceeEEECC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCEEh
Confidence            35899999999964   69999999998 99999999999999999999999997            77777  889988


Q ss_pred             eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCcE--------EEEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYDI--------VLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~~--------v~~~~~q~  193 (286)
                      ...+.+.++..+   .|+..+.+.+...|+    ...+.+++..+            +++|.++        +++||+||
T Consensus       400 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR  479 (588)
T PRK13657        400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR  479 (588)
T ss_pred             hhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence            888888877765   444332222222221    12233333322            3345444        45689999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +++||+++.+|+++||      ||+.+++.+.+.|.+. .+.|...++||.+.       .+.||+|+++++|++.
T Consensus       480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~-------~~~~D~ii~l~~G~i~  548 (588)
T PRK13657        480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLST-------VRNADRILVFDNGRVV  548 (588)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHH-------HHhCCEEEEEECCEEE
Confidence            9999999999999999      8888888888888775 34578888999987       4789999999988653

>PTZ00243 ABC transporter; Provisional

Probab=99.86  E-value=3e-23  Score=215.20  Aligned_cols=178  Identities=15%  Similarity=0.194  Sum_probs=140.0

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..|+++||+|+|+.    +|+++++.+++ |+.|||+|++|||||||+++|.++++            |..|+  +||.|
T Consensus      1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~-GekVaIVGrTGSGKSTLl~lLlrl~~------------p~~G~I~IDG~d 1373 (1560)
T PTZ00243       1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAP-REKVGIVGRTGSGKSTLLLTFMRMVE------------VCGGEIRVNGRE 1373 (1560)
T ss_pred             CeEEEEEEEEEeCCCCCceeecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence            46999999999964    69999999998 99999999999999999999999997            77787  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH------------hcCCcE--------EEEeCHHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM------------AKGYDI--------VLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~~~--------v~~~~~q~  193 (286)
                      +..++..+++..+   +|+.++.+.++..|+.   ..+.+++.+++            +.|+++        +++||+|+
T Consensus      1374 i~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr 1453 (1560)
T PTZ00243       1374 IGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL 1453 (1560)
T ss_pred             cccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH
Confidence            9988988888765   6666654444444432   23455555442            334444        44589999


Q ss_pred             HHHHHHHhCC-CcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          194 ARTLRRILGD-SAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       194 v~iaral~~~-~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      +.+||+++++ ++++|+      ||+.++..+.+.|.+. .+.|...|+||+++       +..||+|+++++|++.|
T Consensus      1454 LaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~t-------i~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243       1454 MCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT-------VAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHH-------HHhCCEEEEEECCEEEE
Confidence            9999999975 677777      7777777887777764 44588899999999       57899999999997643

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.86  E-value=1e-22  Score=194.61  Aligned_cols=177  Identities=19%  Similarity=0.262  Sum_probs=136.9

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|+|+.    .++++++.+++ |++++|+|+||||||||+++|+|+++            |..|+  ++|.+
T Consensus       329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~-G~~v~IvG~sGsGKSTLl~lL~gl~~------------~~~G~I~i~g~~  395 (571)
T TIGR02203       329 GDVEFRNVTFRYPGRDRPALDSISLVIEP-GETVALVGRSGSGKSTLVNLIPRFYE------------PDSGQILLDGHD  395 (571)
T ss_pred             CeEEEEEEEEEcCCCCCccccCeeEEecC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEECCEe
Confidence            45899999999964    68999999998 99999999999999999999999997            77787  78988


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCCcE--------EEEeCH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGYDI--------VLRVDI  191 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~~~--------v~~~~~  191 (286)
                      +...+.+.++..+   +|+.++.+.....|+     ...+.+++.++            ++.|.++        +++||+
T Consensus       396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr  475 (571)
T TIGR02203       396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR  475 (571)
T ss_pred             HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            8777877777654   444443333333221     12334433332            3334443        557899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+++||+++.+|+++|+      ||+.+++.+.+.|.+. .+.+...++|+...       ...||+|+++++|++.
T Consensus       476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~-------~~~~D~ii~l~~g~i~  546 (571)
T TIGR02203       476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST-------IEKADRIVVMDDGRIV  546 (571)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHH-------HHhCCEEEEEeCCEEE
Confidence            999999999999999999      8998899998888775 34588889999977       5789999999988754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=6.5e-23  Score=168.88  Aligned_cols=178  Identities=17%  Similarity=0.202  Sum_probs=117.6

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++|+++.|+.      +++++++.+.+ |+++||+|+||||||||+++|+|+..            |..|+  ++|.+
T Consensus         4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~-Ge~lgivGeSGsGKSTL~r~l~Gl~~------------p~~G~I~~~G~~   70 (252)
T COG1124           4 LSVRNLSIVYGGGKFAFHALNNVSLEIER-GETLGIVGESGSGKSTLARLLAGLEK------------PSSGSILLDGKP   70 (252)
T ss_pred             EEEeceEEEecCCcchhhhhcceeEEecC-CCEEEEEcCCCCCHHHHHHHHhcccC------------CCCceEEECCcc
Confidence            566788888864      68899999998 99999999999999999999999987            55555  55544


Q ss_pred             eeeeCHH-HHHH---Hhhccch--------hhhheeccc-ccCcc--HHHHHHH----------HhcCCcEEEEeCHHHH
Q 043263          140 YFFVSKE-EFLQ---MVDKNEL--------LEYALVYGD-YKGIP--KKQIREY----------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       140 ~~~~~~~-~~~~---~i~~~~~--------~~~~~~~~~-~~~~~--~~~i~~~----------~~~g~~~v~~~~~q~v  194 (286)
                      .....+. .+..   ++.|+..        +......+. ..+..  .+.+.++          +.+...-++|||+||+
T Consensus        71 ~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi  150 (252)
T COG1124          71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI  150 (252)
T ss_pred             cCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHH
Confidence            3322111 1111   1112111        000000000 01111  1112222          4445567889999999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      ++|||+..+|.++|+      ||+.....++.-|.   +..+.+...|+|+++..      ...||+|.|+++|.+.|.
T Consensus       151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v------~~~cdRi~Vm~~G~ivE~  223 (252)
T COG1124         151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV------EHMCDRIAVMDNGQIVEI  223 (252)
T ss_pred             HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHH------HHHhhheeeeeCCeEEEe
Confidence            999999988888888      67665555655443   34455888899999886      478999999999987554

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=5.5e-23  Score=172.67  Aligned_cols=179  Identities=15%  Similarity=0.228  Sum_probs=120.9

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc---
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD---  139 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~---  139 (286)
                      .|+++|+++.|+.  +|+++++.+.+ |++++|+||||||||||+|.++|++.            |..|+  ++|.+   
T Consensus         4 ~i~v~nl~v~y~~~~vl~~i~l~v~~-G~~~~iiGPNGaGKSTLlK~iLGll~------------p~~G~i~~~g~~~~~   70 (254)
T COG1121           4 MIEVENLTVSYGNRPVLEDISLSVEK-GEITALIGPNGAGKSTLLKAILGLLK------------PSSGEIKIFGKPVRK   70 (254)
T ss_pred             EEEEeeeEEEECCEeeeeccEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCc------------CCcceEEEccccccc
Confidence            3678999999995  89999999998 99999999999999999999999887            55555  33332   


Q ss_pred             ------eeeeCHHH-HHHHhhccchhhhheecc------ccc---CccHHHHHHHH---------hcCCcEEEEeCHHHH
Q 043263          140 ------YFFVSKEE-FLQMVDKNELLEYALVYG------DYK---GIPKKQIREYM---------AKGYDIVLRVDIQGA  194 (286)
Q Consensus       140 ------~~~~~~~~-~~~~i~~~~~~~~~~~~~------~~~---~~~~~~i~~~~---------~~g~~~v~~~~~q~v  194 (286)
                            +.++++.. +...+  +.-+.+....+      ++.   ..+++.+.+++         .+....+++||.||+
T Consensus        71 ~~~~~~IgYVPQ~~~~d~~f--P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV  148 (254)
T COG1121          71 RRKRLRIGYVPQKSSVDRSF--PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV  148 (254)
T ss_pred             cccCCeEEEcCcccccCCCC--CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH
Confidence                  22222211 10000  00011111111      111   11234444443         333456889999999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCC-----CCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAE-----GKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~-----G~i  261 (286)
                      .+|||++.+|+++++      +|+.++..+.+-|.+..  +.++.+++|++...      ..++|+|+.++.     |..
T Consensus       149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v------~~~~D~vi~Ln~~~~~~G~~  222 (254)
T COG1121         149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV------MAYFDRVICLNRHLIASGPP  222 (254)
T ss_pred             HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh------HhhCCEEEEEcCeeEeccCh
Confidence            999999999998888      88887777766555432  55888889999986      588999998874     345


Q ss_pred             HHHHH
Q 043263          262 DSAVK  266 (286)
Q Consensus       262 ~~~~~  266 (286)
                      +++..
T Consensus       223 ~~~~~  227 (254)
T COG1121         223 EEVLT  227 (254)
T ss_pred             hhccC
Confidence            55544

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.85  E-value=7.1e-23  Score=194.62  Aligned_cols=177  Identities=16%  Similarity=0.131  Sum_probs=134.0

Q ss_pred             hHHHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263           66 KIELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN  136 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~  136 (286)
                      ..++++||+|.|+.       .|+++++.+++ |++++|+|||||||||++++|+|+++            |++|+  ++
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~-G~~~aivG~sGsGKSTl~~ll~g~~~------------p~~G~i~~~  402 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ-GDIVFIVGENGCGKSTLAKLFCGLYI------------PQEGEILLD  402 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEEC
Confidence            35889999999963       68999999998 99999999999999999999999987            77887  78


Q ss_pred             CcceeeeCHHHHHHHh---hccchhhhheeccccc-CccHHHHHHH------------HhcCCc---EEEEeCHHHHHHH
Q 043263          137 GKDYFFVSKEEFLQMV---DKNELLEYALVYGDYK-GIPKKQIREY------------MAKGYD---IVLRVDIQGARTL  197 (286)
Q Consensus       137 g~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~-~~~~~~i~~~------------~~~g~~---~v~~~~~q~v~ia  197 (286)
                      |.++...+...++..+   .++.++.+.....|.. ....+++.++            +++|++   .+++||+||+++|
T Consensus       403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlala  482 (555)
T TIGR01194       403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALI  482 (555)
T ss_pred             CEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHH
Confidence            8888777777766543   4444444333333321 1233333333            234443   4667899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |+++.+|+++|+      ||+.+++.+.+.+.+   ..+.|...++||++.       ...||+|+++++|++.
T Consensus       483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~-------~~~~d~i~~l~~G~i~  549 (555)
T TIGR01194       483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY-------FELADQIIKLAAGCIV  549 (555)
T ss_pred             HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-------HHhCCEEEEEECCEEE
Confidence            999999999999      888888887776532   234588889999987       5789999999999763

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.85  E-value=1.9e-22  Score=191.05  Aligned_cols=170  Identities=22%  Similarity=0.264  Sum_probs=131.2

Q ss_pred             HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++++||+|.|++    .++++++.+++ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~I~~~g~~i  386 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPP-GERVALVGPSGAGKSTLLNLLLGFVD------------PTEGSIAVNGVPL  386 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEeh
Confidence            5899999999964    69999999998 99999999999999999999999997            77887  789998


Q ss_pred             eeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCc--------EEEEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYD--------IVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~--------~v~~~~~q~  193 (286)
                      ...+.+.++..+   .|+.++.+.....|+.    ..+.+++.++            +++|.+        .+.+|++||
T Consensus       387 ~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr  466 (529)
T TIGR02857       387 ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR  466 (529)
T ss_pred             hhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence            888888777764   4444433333332211    1233333333            233443        355689999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      +++||+++++|+++|+      ||+.+++.+.+.+.+. .+.|...++||++.       .+.||+|+++
T Consensus       467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~-------~~~~d~i~~l  529 (529)
T TIGR02857       467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLAL-------AERADRIVVL  529 (529)
T ss_pred             HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHH-------HHhCCEEEeC
Confidence            9999999999999999      8988898898888875 34578888999988       4789999874

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.85  E-value=1.2e-22  Score=197.90  Aligned_cols=178  Identities=20%  Similarity=0.305  Sum_probs=137.2

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ...++++||+|.|+.    .++++++.+++ |+.++|+|+||||||||+++|+|+++            |.+|+  ++|.
T Consensus       453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~-G~~vaivG~sGsGKSTL~~ll~g~~~------------p~~G~I~idg~  519 (694)
T TIGR01846       453 RGAITFENIRFRYAPDSPEVLSNLNLDIKP-GEFIGIVGPSGSGKSTLTKLLQRLYT------------PQHGQVLVDGV  519 (694)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCE
Confidence            346899999999953    69999999998 99999999999999999999999997            77887  8999


Q ss_pred             ceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEEE--------EeCH
Q 043263          139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIVL--------RVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v~--------~~~~  191 (286)
                      ++...+.+.++..+   .|+..+.+.+...|+.    ..+.+++.++            ++.|.++.+        +||+
T Consensus       520 ~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~  599 (694)
T TIGR01846       520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR  599 (694)
T ss_pred             ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence            98888888887754   4443322222222211    2333333332            344555544        5789


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+++||+++.+|+++|+      ||+.++..+.+.|.+. .+.|...++||++.       ...||+|+++++|++.
T Consensus       600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~-------~~~~d~ii~l~~G~i~  670 (694)
T TIGR01846       600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST-------VRACDRIIVLEKGQIA  670 (694)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH-------HHhCCEEEEEeCCEEE
Confidence            999999999999999999      8888888888888875 34577888999988       4679999999999764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.85  E-value=1.6e-22  Score=159.15  Aligned_cols=176  Identities=18%  Similarity=0.222  Sum_probs=124.9

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      +.+++|.+.|++.--..++.++. |++++|+|||||||||++++++|+..            |.+|+  ++|++.....+
T Consensus         2 l~L~~V~~~y~~~~~~fdl~v~~-ge~vAi~GpSGaGKSTLLnLIAGF~~------------P~~G~i~i~g~d~t~~~P   68 (231)
T COG3840           2 LALDDVRFSYGHLPMRFDLTVPA-GEIVAILGPSGAGKSTLLNLIAGFET------------PASGEILINGVDHTASPP   68 (231)
T ss_pred             ccccceEEeeCcceEEEEEeecC-CcEEEEECCCCccHHHHHHHHHhccC------------CCCceEEEcCeecCcCCc
Confidence            45678889998755556677787 99999999999999999999999976            88888  78888765443


Q ss_pred             HH--HHHHhhccchhhhheecccc-----cC-----ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          146 EE--FLQMVDKNELLEYALVYGDY-----KG-----IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       146 ~~--~~~~i~~~~~~~~~~~~~~~-----~~-----~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      .+  +..+++.+.++.+..+..|.     .+     ...+.++.+         .++-...+++|++||+++||.+++..
T Consensus        69 ~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~  148 (231)
T COG3840          69 AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ  148 (231)
T ss_pred             ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence            32  34444555555555554442     11     122333333         23334678899999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          205 AVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +++++      ||+.-+.....-+.   ...+.|..+++|..+.+      .+.+|++++.++|++.
T Consensus       149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da------~~ia~~~~fl~~Gri~  209 (231)
T COG3840         149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA------ARIADRVVFLDNGRIA  209 (231)
T ss_pred             CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH------HHhhhceEEEeCCEEE
Confidence            88777      66654444444333   22344888889988886      5889999999999873

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=9.6e-23  Score=164.37  Aligned_cols=182  Identities=22%  Similarity=0.264  Sum_probs=124.6

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..++++||++.|+.  +|+++++.+++ +++++|+|||||||||++++|.++.+.+..+       .-+|+  ++|++++
T Consensus         6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~-~~VTAlIGPSGcGKST~LR~lNRmndl~~~~-------r~~G~v~~~g~ni~   77 (253)
T COG1117           6 PAIEVRDLNLYYGDKHALKDINLDIPK-NKVTALIGPSGCGKSTLLRCLNRMNDLIPGA-------RVEGEVLLDGKNIY   77 (253)
T ss_pred             ceeEecceeEEECchhhhccCceeccC-CceEEEECCCCcCHHHHHHHHHhhcccCcCc-------eEEEEEEECCeecc
Confidence            35788999999997  89999999998 9999999999999999999999886533221       12354  6788776


Q ss_pred             e--eCHHHHHHHh----hccc-h---hhhheecc-cccCcc-----------------HHHHHHHHhcCCcEEEEeCHHH
Q 043263          142 F--VSKEEFLQMV----DKNE-L---LEYALVYG-DYKGIP-----------------KKQIREYMAKGYDIVLRVDIQG  193 (286)
Q Consensus       142 ~--~~~~~~~~~i----~~~~-~---~~~~~~~~-~~~~~~-----------------~~~i~~~~~~g~~~v~~~~~q~  193 (286)
                      .  ++..+++..+    +... |   +.++..++ .+.+..                 ++++.+.+.+....++|||.||
T Consensus        78 ~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR  157 (253)
T COG1117          78 DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR  157 (253)
T ss_pred             CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence            4  3455666543    3322 2   12222222 222222                 2334444666666789999999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +-+||++.-.|.++++      |||-+...+.+.+.+.. ..|+..++|-+..+      .+.+|+...+..|.+
T Consensus       158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA------aRvSD~taFf~~G~L  226 (253)
T COG1117         158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA------ARVSDYTAFFYLGEL  226 (253)
T ss_pred             HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH------HHHhHhhhhhcccEE
Confidence            9999999977777777      77777777766666543 34778889988776      355565555555544

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.85  E-value=7.2e-23  Score=194.41  Aligned_cols=178  Identities=12%  Similarity=0.097  Sum_probs=133.1

Q ss_pred             HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      .++++||+|.|+.   .++++++.+++ |++++|+|+||||||||+++|+|+++            |.+|+  ++|.++.
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~-G~~~aivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~~  388 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKR-GELLFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGKPVT  388 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEECC
Confidence            5889999999964   69999999998 99999999999999999999999997            77777  7888887


Q ss_pred             eeCHHHHHHHh---hccchhhhheecccccCccHHHHHHHHh-----------cC---CcEEEEeCHHHHHHHHHHhCCC
Q 043263          142 FVSKEEFLQMV---DKNELLEYALVYGDYKGIPKKQIREYMA-----------KG---YDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~g---~~~v~~~~~q~v~iaral~~~~  204 (286)
                      ..+...++..+   .++.++.+.....+....+.+.+.+.++           .+   ...+++|++||+++||+++.+|
T Consensus       389 ~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~  468 (547)
T PRK10522        389 AEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER  468 (547)
T ss_pred             CCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            77777766653   4444444333333311223333333221           11   2357789999999999999999


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          205 AVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      +++|+      ||+.++..+.+.+.+.   .+.|...++||++.       ...||+|+++++|++.+.
T Consensus       469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-------~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-------FIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-------HHhCCEEEEEECCEEEEe
Confidence            99999      7887777777776532   24577888999877       578999999999976443

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.3e-22  Score=170.41  Aligned_cols=178  Identities=18%  Similarity=0.224  Sum_probs=120.0

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc---ce
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK---DY  140 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~---~~  140 (286)
                      |.++++++.|+.  .+.++++.+.. |+.++|+|||||||||++++|+|+..            |+.|.  ++|+   |.
T Consensus         3 i~i~~~~~~~~~~~a~~di~l~i~~-Ge~vaLlGpSGaGKsTlLRiIAGLe~------------p~~G~I~~~~~~l~D~   69 (345)
T COG1118           3 IRINNVKKRFGAFGALDDISLDIKS-GELVALLGPSGAGKSTLLRIIAGLET------------PDAGRIRLNGRVLFDV   69 (345)
T ss_pred             eeehhhhhhcccccccccceeeecC-CcEEEEECCCCCcHHHHHHHHhCcCC------------CCCceEEECCEeccch
Confidence            567889999987  78899999998 99999999999999999999999986            77777  5666   33


Q ss_pred             eeeCHHH--HHHHhhccchhhhheecccc-cCc-------cHH----HHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          141 FFVSKEE--FLQMVDKNELLEYALVYGDY-KGI-------PKK----QIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       141 ~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~-------~~~----~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      ..+...+  +...++...++.+.+++.|+ +|.       +..    .+.+.         .+....-+++||+||+++|
T Consensus        70 ~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALA  149 (345)
T COG1118          70 SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALA  149 (345)
T ss_pred             hccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHH
Confidence            2211111  11122333444444444442 111       111    12222         1223355778999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERL---VERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl---~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      |++...|+++++      ||+.-...+.+-|   .++-+.+...++|+.+.+      .+.||+|+++++|+|++.
T Consensus       150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea------~~ladrvvvl~~G~Ieqv  219 (345)
T COG1118         150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA------LELADRVVVLNQGRIEQV  219 (345)
T ss_pred             HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH------HhhcceEEEecCCeeeee
Confidence            999977777666      5554444444333   344455777789988887      589999999999987554

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.85  E-value=3.7e-20  Score=151.56  Aligned_cols=187  Identities=39%  Similarity=0.622  Sum_probs=165.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ..-++|.||+|+||+|++++|...++. +++++.+++|.|+.|+++|.+|++.+..++..++..+.|++.+.++++.||.
T Consensus        37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt  116 (231)
T KOG0707|consen   37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT  116 (231)
T ss_pred             CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence            367999999999999999999987774 8999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC--
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK--  248 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~--  248 (286)
                      +.+.+++....|..++.+.+.|.+..+++. ....++|++.+++...+.+||.+|+..+...+..|+..+..+.....  
T Consensus       117 si~av~~~~~~gk~~ildId~qg~~~i~~~-~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~  195 (231)
T KOG0707|consen  117 SIAAVQRLMLSGKVCILDIDLQGVQPIRAT-SLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENS  195 (231)
T ss_pred             hHHHHHHHHhcCCcceeehhhcCceeeecC-CCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCC
Confidence            998888888899999999999988888876 35678888889999999999999987788999999997666665554  


Q ss_pred             -CCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          249 -NFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       249 -~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                       .+|.++++. .++++++.++...+-.......
T Consensus       196 g~~d~~~~ns-~~lee~~kel~~~~~~~~~~~~  227 (231)
T KOG0707|consen  196 GSFDLVIVNS-DRLEEAYKELEIFISSDDKESH  227 (231)
T ss_pred             ccccceecCC-CchhhhhhhhhhhhhHHHHhhh
Confidence             499999886 6799999999988877665544

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.84  E-value=1.2e-22  Score=192.28  Aligned_cols=158  Identities=22%  Similarity=0.296  Sum_probs=121.4

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   .|+++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.++
T Consensus       333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~-G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~i~g~~i  399 (529)
T TIGR02868       333 PTLELRDLSFGYPGSPPVLDGVSLDLPP-GERVAILGPSGSGKSTLLMLLTGLLD------------PLQGEVTLDGVSV  399 (529)
T ss_pred             ceEEEEEEEEecCCCCceeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEh
Confidence            35899999999974   69999999998 99999999999999999999999997            77887  899998


Q ss_pred             eeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcEE--------EEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDIV--------LRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~v--------~~~~~q~  193 (286)
                      ... .++++..+   +|+.++.+.++..|+.    ..+.+++.++            +++|+++.        ++||+||
T Consensus       400 ~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR  478 (529)
T TIGR02868       400 SSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR  478 (529)
T ss_pred             hhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence            887 77777764   5655544443433321    2344444433            34555554        4589999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRI  237 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl  237 (286)
                      +++||+++++|+++||      ||+.++..+.+.+.+. .+.|...|+||+
T Consensus       479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            9999999999999999      8888888888888765 334677777763

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.84  E-value=2.4e-22  Score=190.79  Aligned_cols=177  Identities=19%  Similarity=0.214  Sum_probs=131.3

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++|++|.|+.    .++++++.+++ |++++|+|+||||||||+++|+|+++            |.+|+  ++|.+
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~  381 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQA-GEALAIIGPSGSGKSTLARLIVGIWP------------PTSGSVRLDGAD  381 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEe
Confidence            35899999999953    69999999998 99999999999999999999999987            77777  78888


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCc--------EEEEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYD--------IVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~--------~v~~~~~q  192 (286)
                      +...+...++..+   .++.++.......|+.    ..+.+++.++            +++|.+        .+++||+|
T Consensus       382 i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q  461 (544)
T TIGR01842       382 LKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ  461 (544)
T ss_pred             hhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence            7766766666543   3333322222222211    1233332221            333433        35578999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |+++||+++.+|+++|+      ||+.++..+.+.|.+.  .+.+...++|+++.       ...||+|+++++|++.
T Consensus       462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~-------~~~~d~i~~l~~G~i~  532 (544)
T TIGR01842       462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL-------LGCVDKILVLQDGRIA  532 (544)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-------HHhCCEEEEEECCEEE
Confidence            99999999999999998      8888888888888764  24577888999986       4689999999999764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.84  E-value=3.9e-22  Score=190.73  Aligned_cols=177  Identities=24%  Similarity=0.308  Sum_probs=133.7

Q ss_pred             hHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           66 KIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ..++++||+|.|+.     .++++++.+.+ |+.++|+|+||||||||+++|+|+++            |.+|+  ++|.
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~-Ge~i~IvG~sGsGKSTLlklL~gl~~------------p~~G~I~i~g~  402 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDGLNLTVRP-GETVALVGPSGAGKSTLFQLLLRFYD------------PQSGRILLDGV  402 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccceeEEecC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEECCE
Confidence            45899999999963     68999999998 99999999999999999999999997            77887  7888


Q ss_pred             ceeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCc--------EEEEeCH
Q 043263          139 DYFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYD--------IVLRVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~--------~v~~~~~  191 (286)
                      ++...+...++..+   +|+.++.+.....|+.    ..+.+++.++            ++.|.+        .+++||+
T Consensus       403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~  482 (576)
T TIGR02204       403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR  482 (576)
T ss_pred             EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence            88777777776654   4444433322222211    1223333222            233433        3456899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+.+||+++.+|+++|+      ||+.+++.+.+.+.+. .+.+...++|+++.       ...||+|+++++|++.
T Consensus       483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~-------~~~~d~vi~l~~g~~~  553 (576)
T TIGR02204       483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT-------VLKADRIVVMDQGRIV  553 (576)
T ss_pred             HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCCEEEEEECCEEE
Confidence            999999999999999999      8888888888888764 34578888999977       4789999999999764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.84  E-value=4.4e-22  Score=189.79  Aligned_cols=176  Identities=14%  Similarity=0.235  Sum_probs=131.5

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++|++|.|+.    .++++++.+++ |++++|+||||||||||+++|+|+++            |.+|+  ++|.+
T Consensus       312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~-G~~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~i~~~g~~  378 (569)
T PRK10789        312 GELDVNIRQFTYPQTDHPALENVNFTLKP-GQMLGICGPTGSGKSTLLSLIQRHFD------------VSEGDIRFHDIP  378 (569)
T ss_pred             CcEEEEEEEEECCCCCCccccCeeEEECC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCEEEECCEE
Confidence            35889999999963    69999999998 99999999999999999999999987            77887  78888


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYDI--------VLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~~--------v~~~~~q  192 (286)
                      +...+...++..+   .++.++...+...|+    ...+.+++.++            ++.|.++        +++|++|
T Consensus       379 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q  458 (569)
T PRK10789        379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ  458 (569)
T ss_pred             HhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence            7767777666653   333332222222221    11233333332            2344444        4468999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++||+++.+|+++|+      ||+.+++.+.+.|.+. .+.|...++||++.       ...||+|+++++|++
T Consensus       459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~-------~~~~d~i~~l~~G~i  527 (569)
T PRK10789        459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA-------LTEASEILVMQHGHI  527 (569)
T ss_pred             HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH-------HHcCCEEEEEeCCEE
Confidence            99999999999999999      8888888888888764 34577888999987       467999999998865

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.83  E-value=3.7e-22  Score=177.80  Aligned_cols=175  Identities=21%  Similarity=0.273  Sum_probs=121.7

Q ss_pred             HHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+      .+|+++++.+.+ |++++|+|+||||||||+++|+++..            |+.|+  ++|.+
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~-Gei~gIiG~sGaGKSTLlr~I~gl~~------------p~~G~I~i~G~~   68 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLER------------PTSGSVIVDGQD   68 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEE
Confidence            45678888884      168999999998 99999999999999999999999986            77777  77887


Q ss_pred             eeeeCHHHHHHH---h----hccchhhhheeccc------ccCccHHH----HHHHH---------hcCCcEEEEeCHHH
Q 043263          140 YFFVSKEEFLQM---V----DKNELLEYALVYGD------YKGIPKKQ----IREYM---------AKGYDIVLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~~~~---i----~~~~~~~~~~~~~~------~~~~~~~~----i~~~~---------~~g~~~v~~~~~q~  193 (286)
                      +...+..+++..   +    ++..++....+..+      ..+...+.    +.+.+         ......+++|++||
T Consensus        69 i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQR  148 (343)
T TIGR02314        69 LTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQR  148 (343)
T ss_pred             CCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence            765554443221   1    11122111122221      11222211    22222         22334677899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+||+++.+|+++++      ||+.+...+.+.|.+.   .+.+...++|+++..      .+.||+|+++++|++
T Consensus       149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v------~~~~d~v~vl~~G~i  219 (343)
T TIGR02314       149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV------KRICDCVAVISNGEL  219 (343)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888888      7887777777766653   244778889998875      378999999998865

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.83  E-value=6.4e-22  Score=189.15  Aligned_cols=176  Identities=22%  Similarity=0.307  Sum_probs=130.3

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   .++++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.++
T Consensus       333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~  399 (585)
T TIGR01192       333 GAVEFRHITFEFANSSQGVFDVSFEAKA-GQTVAIVGPTGAGKTTLINLLQRVYD------------PTVGQILIDGIDI  399 (585)
T ss_pred             CeEEEEEEEEECCCCCccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHccCCC------------CCCCEEEECCEEh
Confidence            35889999999964   69999999998 99999999999999999999999987            77777  788887


Q ss_pred             eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCc--------EEEEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYD--------IVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~--------~v~~~~~q~  193 (286)
                      ...+.+.++..+   .|+..+.+.....|+    ...+.+++.++            ++.|.+        .+++|++||
T Consensus       400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr  479 (585)
T TIGR01192       400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR  479 (585)
T ss_pred             hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence            777766666543   333332222222221    11223332221            223333        355689999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++||+++.+|+++|+      ||+.++..+.+.|.+. .+.|...++||++.       ...||+|+++++|++
T Consensus       480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~-------~~~~d~i~~l~~G~i  547 (585)
T TIGR01192       480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLST-------VRNADLVLFLDQGRL  547 (585)
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHH-------HHcCCEEEEEECCEE
Confidence            9999999999999999      8888888888888764 34477888999987       467999999998876

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.83  E-value=5.1e-22  Score=177.08  Aligned_cols=175  Identities=17%  Similarity=0.174  Sum_probs=122.0

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |+++||+|||||||||++++|+|++.            |..|+  ++|.++..
T Consensus        41 ~i~i~nl~k~y~~~~~l~~is~~i~~-Gei~gLlGpNGaGKSTLl~~L~Gl~~------------p~~G~i~i~G~~~~~  107 (340)
T PRK13536         41 AIDLAGVSKSYGDKAVVNGLSFTVAS-GECFGLLGPNGAGKSTIARMILGMTS------------PDAGKITVLGVPVPA  107 (340)
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCceEEEECCEECCc
Confidence            4899999999986  79999999998 99999999999999999999999987            66666  67765532


Q ss_pred             eCHHHHHHHh----hcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263          143 VSKEEFLQMV----DKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       143 ~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iara  199 (286)
                      .. ...+..+    ++.      ...++..+++..++....    .+.+.+         ......+++|++|++.+|++
T Consensus       108 ~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~a  186 (340)
T PRK13536        108 RA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA  186 (340)
T ss_pred             ch-HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHH
Confidence            21 1222211    111      122322222323333221    122222         12223466789999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|+++|+      ||+.+...+++.|.+.  .+.+...++|.++..      ...||+|+++++|++
T Consensus       187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~------~~~~d~i~il~~G~i  250 (340)
T PRK13536        187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA------ERLCDRLCVLEAGRK  250 (340)
T ss_pred             HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence            9999988888      8888788887777653  234677778988875      368999999988865

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.82  E-value=1.9e-18  Score=140.97  Aligned_cols=175  Identities=26%  Similarity=0.348  Sum_probs=134.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCc---ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDS---LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      |++++|+|||||||||+++.|+..+..   ..+...+++|++.   .+|.++.+.+.++|......+.|......+++.|
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSY   77 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence            568999999999999999999987642   3455566676544   4688898999999888777777777667777888


Q ss_pred             CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263          169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                      +.+. .+...+..|..+++++..+....++..+ ....+|||+++ .+.+.+||..|++.+...+..++..+....  ..
T Consensus        78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~-~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~--~~  152 (179)
T TIGR02322        78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRY-PNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARSARFA--AA  152 (179)
T ss_pred             cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHC-CCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHHhhcc--cc
Confidence            8876 4777788888999999887666666665 34578889975 889999999987767777777776543222  14


Q ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          249 NFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       249 ~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .+|.++++++++++++.+++.+++.+
T Consensus       153 ~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       153 PADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            57888777778999999999988753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.82  E-value=6.9e-22  Score=174.25  Aligned_cols=175  Identities=19%  Similarity=0.197  Sum_probs=122.1

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |+++||+|||||||||++++|+|++.            |+.|+  ++|.++..
T Consensus         7 ~i~i~~l~k~~~~~~~l~~vsl~i~~-Gei~gllGpNGaGKSTLl~~l~Gl~~------------p~~G~v~i~G~~~~~   73 (306)
T PRK13537          7 PIDFRNVEKRYGDKLVVDGLSFHVQR-GECFGLLGPNGAGKTTTLRMLLGLTH------------PDAGSISLCGEPVPS   73 (306)
T ss_pred             eEEEEeEEEEECCeEEEecceEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEeccc
Confidence            4788999999985  79999999998 99999999999999999999999986            66666  67776543


Q ss_pred             eCHHHHHHHh----hcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263          143 VSKEEFLQMV----DKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       143 ~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iara  199 (286)
                      .. ...+..+    +..      ...++..+++..++....    .+.+++         ......+++|++|++.+|++
T Consensus        74 ~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  152 (306)
T PRK13537         74 RA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA  152 (306)
T ss_pred             ch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHH
Confidence            22 2222221    111      223333333333443322    122222         12223566789999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|+++|+      ||+.+...+++.|.+.  .+.+...++|.++..      ...||+|+++++|++
T Consensus       153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~------~~~~d~i~il~~G~i  216 (306)
T PRK13537        153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA------ERLCDRLCVIEEGRK  216 (306)
T ss_pred             HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence            9988888888      7887777777766653  234667778988875      367999999998864

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.82  E-value=6.8e-22  Score=204.94  Aligned_cols=176  Identities=13%  Similarity=0.121  Sum_probs=138.5

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..|+++||+++|+.    +|+++++.+++ |+.|||+|++|||||||+++|.++++             .+|+  +||.|
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~-GekvaIvGrSGsGKSTLl~lL~rl~~-------------~~G~I~IdG~d 1281 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEG-GQRVGLLGRTGSGKSTLLSALLRLLS-------------TEGEIQIDGVS 1281 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcC-CCEEEEECCCCCCHHHHHHHHhhhcC-------------CCcEEEECCEE
Confidence            46899999999963    79999999998 99999999999999999999999974             3455  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH------------hcCCcE--------EEEeCHHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM------------AKGYDI--------VLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~~~--------v~~~~~q~  193 (286)
                      +..++...++..+   +|+.++...++..|+.   ..+.+++.+++            +.|.++        +++||+|+
T Consensus      1282 i~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271      1282 WNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred             cccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence            9888888888754   6666554444444432   12444444442            234443        44589999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +.+||+++++++++||      ||..++..+.+.|++. .+.|...|+||+++       +..||+|+++++|++.
T Consensus      1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~t-------i~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271      1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEA-------LLECQQFLVIEGSSVK 1430 (1490)
T ss_pred             HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEEE
Confidence            9999999999999988      8888888888888875 34588899999998       5789999999999763

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=2.3e-21  Score=159.31  Aligned_cols=174  Identities=18%  Similarity=0.236  Sum_probs=129.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +++++|+++||.  ++.++++.+++ |++.|++|+|||||||+.++|.+++.            |++|+  ++|.++...
T Consensus         3 L~ie~vtK~Fg~k~av~~isf~v~~-G~i~GllG~NGAGKTTtfRmILglle------------~~~G~I~~~g~~~~~~   69 (300)
T COG4152           3 LEIEGVTKSFGDKKAVDNISFEVPP-GEIFGLLGPNGAGKTTTFRMILGLLE------------PTEGEITWNGGPLSQE   69 (300)
T ss_pred             eEEecchhccCceeeecceeeeecC-CeEEEeecCCCCCccchHHHHhccCC------------ccCceEEEcCcchhhh
Confidence            568899999997  89999999999 99999999999999999999999997            77776  677765443


Q ss_pred             CHHHHHHH------hhccchhhhheecccccCccHHHHHHH----Hhc---------CCcEEEEeCHHHHHHHHHHhCCC
Q 043263          144 SKEEFLQM------VDKNELLEYALVYGDYKGIPKKQIREY----MAK---------GYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       144 ~~~~~~~~------i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~---------g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      ..+.+..+      .+..+..+...+++.+.+.+.++++..    +++         .-..++-|..|.+.++.++++.|
T Consensus        70 ~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP  149 (300)
T COG4152          70 IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP  149 (300)
T ss_pred             hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence            33333222      233344556667777777776555443    221         11234457779999999999999


Q ss_pred             cEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          205 AVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .++|+      |||.+.+.+.+.+.+..  +.|+..-+|++++.      -..||++++++.|+
T Consensus       150 eLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v------EeLCD~llmL~kG~  207 (300)
T COG4152         150 ELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV------EELCDRLLMLKKGQ  207 (300)
T ss_pred             CEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH------HHHhhhhheecCCc
Confidence            99999      99999888887766533  22555558999986      37899999988874

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.82  E-value=1.7e-21  Score=170.38  Aligned_cols=174  Identities=23%  Similarity=0.247  Sum_probs=125.7

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +.++||++.|+ .  +|+++++.+.+ |+++||+|||||||||++++|+|+..            |.+|+  ++|.+...
T Consensus         5 i~~~~l~k~~~~~~~~l~~vs~~i~~-Gei~gllG~NGAGKTTllk~l~gl~~------------p~~G~i~i~G~~~~~   71 (293)
T COG1131           5 IEVRNLTKKYGGDKTALDGVSFEVEP-GEIFGLLGPNGAGKTTLLKILAGLLK------------PTSGEILVLGYDVVK   71 (293)
T ss_pred             eeecceEEEeCCCCEEEeceeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEEcCEeCcc
Confidence            56789999999 4  89999999998 99999999999999999999999986            77777  77876543


Q ss_pred             eCHHHHHHHh----hccch------hhhheecccccCcc----HHHHHHHHh---------cCCcEEEEeCHHHHHHHHH
Q 043263          143 VSKEEFLQMV----DKNEL------LEYALVYGDYKGIP----KKQIREYMA---------KGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       143 ~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~----~~~i~~~~~---------~g~~~v~~~~~q~v~iara  199 (286)
                      . ...+...+    ++..+      .++..++...|+..    .+.+.+.++         .....++.|++||+.+|.+
T Consensus        72 ~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~a  150 (293)
T COG1131          72 E-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALA  150 (293)
T ss_pred             C-HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHH
Confidence            2 23333322    22222      34445555556543    233444321         1124466789999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVERKT---ENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|+++||      ||+.+...+++.|++...   .+....+|.++..      ...||+|+++++|.+
T Consensus       151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~------~~~~d~v~il~~G~~  215 (293)
T COG1131         151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA------EELCDRVIILNDGKI  215 (293)
T ss_pred             HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH------HHhCCEEEEEeCCEE
Confidence            9999988888      888778888877775432   3566668888875      356999999999965

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=99.82  E-value=1e-18  Score=157.21  Aligned_cols=195  Identities=28%  Similarity=0.381  Sum_probs=161.3

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE  159 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~  159 (286)
                      +..+....+.+...++|+|++|+|-.-+-+.|....+ .|...++||+|+++.++.+|.+|+|++.++|...+..+.|++
T Consensus       329 YEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE  408 (542)
T KOG0609|consen  329 YEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLE  408 (542)
T ss_pred             HHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCcee
Confidence            4444444445578999999999999999999987765 788999999999999999999999999999999999999999


Q ss_pred             hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc-------CCCHHH
Q 043263          160 YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK-------TENREE  232 (286)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~-------~~t~~~  232 (286)
                      ++.+.+++||++.+.++..+..|+.++++.+.|.+..+|..= ..+++||+.+|+.+.+.+.-..-.       ..+.+.
T Consensus       409 ~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~E-f~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~  487 (542)
T KOG0609|consen  409 YGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAE-FKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDED  487 (542)
T ss_pred             cCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhc-ccceEEEecCCCchhHHHHhhhccccccccccCCHHH
Confidence            999999999999999999999999999999999999998763 779999999998776643222111       124555


Q ss_pred             HHHHHHHHH-HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          233 LLVRIATAR-EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       233 i~~rl~~~~-~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      +.+.++... -+..+..++|.||+|++  +++++++|..+++++...
T Consensus       488 Lq~i~~eS~~ie~~yghyfD~iIvN~d--ld~t~~eL~~~iekl~te  532 (542)
T KOG0609|consen  488 LQEIIDESARIEQQYGHYFDLIIVNSD--LDKTFRELKTAIEKLRTE  532 (542)
T ss_pred             HHHHHHHHHHHHHHhhhheeEEEEcCc--HHHHHHHHHHHHHHhccC
Confidence            544444322 24455689999999998  999999999999987644

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.82  E-value=1.4e-21  Score=166.36  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=114.3

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~~   68 (235)
T cd03261           2 ELRGLTKSFGGRTVLKGVDLDVRR-GEILAIIGPSGSGKSTLLRLIVGLLR------------PDSGEVLIDGEDISGLS   68 (235)
T ss_pred             eEEEEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccC
Confidence            45778888865  78999999998 99999999999999999999999986            55565  5565543322


Q ss_pred             H---HHHHHHh---hcc-------chhhhheeccccc-CccHH----HHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263          145 K---EEFLQMV---DKN-------ELLEYALVYGDYK-GIPKK----QIREYM---------AKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       145 ~---~~~~~~i---~~~-------~~~~~~~~~~~~~-~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~ia  197 (286)
                      .   ..++..+   .+.       ...++..+....+ ....+    .+.+.+         ......+++|++|++.+|
T Consensus        69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia  148 (235)
T cd03261          69 EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA  148 (235)
T ss_pred             hhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            2   1122111   111       1112211110001 11111    122222         222245678899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~------~~~~d~v~~l~~G~i  215 (235)
T cd03261         149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA------FAIADRIAVLYDGKI  215 (235)
T ss_pred             HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH------HHhcCEEEEEECCeE
Confidence            999988888887      7777777777766653   234677789988875      367999999998876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=8.4e-22  Score=162.45  Aligned_cols=174  Identities=17%  Similarity=0.202  Sum_probs=118.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +++++|+++||+  +++++++.+.+ |++++|+|||||||||+.++|.|+|.            |+.|+  +.|+++..+
T Consensus         5 L~v~~l~k~FGGl~Al~~Vsl~v~~-Gei~~LIGPNGAGKTTlfNlitG~~~------------P~~G~v~~~G~~it~l   71 (250)
T COG0411           5 LEVRGLSKRFGGLTAVNDVSLEVRP-GEIVGLIGPNGAGKTTLFNLITGFYK------------PSSGTVIFRGRDITGL   71 (250)
T ss_pred             eeeccceeecCCEEEEeceeEEEcC-CeEEEEECCCCCCceeeeeeeccccc------------CCCceEEECCcccCCC
Confidence            467899999998  89999999998 99999999999999999999999997            88887  788888877


Q ss_pred             CHHHHHHH-----h------hccchhhhheeccccc-------Cc-----cHHHH----HHHHh---------cCCcEEE
Q 043263          144 SKEEFLQM-----V------DKNELLEYALVYGDYK-------GI-----PKKQI----REYMA---------KGYDIVL  187 (286)
Q Consensus       144 ~~~~~~~~-----i------~~~~~~~~~~~~~~~~-------~~-----~~~~i----~~~~~---------~g~~~v~  187 (286)
                      ++.+...+     +      +.-..++|.......+       +.     ..++.    .++++         .-...+.
T Consensus        72 ~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls  151 (250)
T COG0411          72 PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLS  151 (250)
T ss_pred             CHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC
Confidence            76654432     1      2222233322211100       00     11111    11111         1112344


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          188 RVDIQGARTLRRILGDSAVFVFLAAES-------EMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      .|+..++.+||+++.+|.++++ |+|.       ...+.+.|++   +.+.+...|.|+++..      ...||+|+|++
T Consensus       152 yG~qR~LEIArALa~~P~lLLL-DEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V------m~l~dri~Vl~  224 (250)
T COG0411         152 YGQQRRLEIARALATQPKLLLL-DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLN  224 (250)
T ss_pred             hhHhHHHHHHHHHhcCCCEEEe-cCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH------hhhccEEEecc
Confidence            5777899999999977666655 4432       3345455544   3445777889999987      48999999999


Q ss_pred             CCCH
Q 043263          258 EGKL  261 (286)
Q Consensus       258 ~G~i  261 (286)
                      .|++
T Consensus       225 ~G~~  228 (250)
T COG0411         225 YGEV  228 (250)
T ss_pred             CCcC
Confidence            8864

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=5.8e-21  Score=156.34  Aligned_cols=175  Identities=17%  Similarity=0.165  Sum_probs=118.1

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||+..||.  +|+++++.+.+ |++++|+|+||+||||+++.|+|+.+            +..|+  ++|+|+..
T Consensus         3 mL~v~~l~~~YG~~~~L~gvsl~v~~-Geiv~llG~NGaGKTTlLkti~Gl~~------------~~~G~I~~~G~dit~   69 (237)
T COG0410           3 MLEVENLSAGYGKIQALRGVSLEVER-GEIVALLGRNGAGKTTLLKTIMGLVR------------PRSGRIIFDGEDITG   69 (237)
T ss_pred             ceeEEeEeecccceeEEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeeEEECCeecCC
Confidence            3678899999997  89999999998 99999999999999999999999986            55666  67888877


Q ss_pred             eCHHHHHHH----hhcc-------chhhhheecccccC-----cc-HHH-------HHHHHhcCCcEEEEeCHHHHHHHH
Q 043263          143 VSKEEFLQM----VDKN-------ELLEYALVYGDYKG-----IP-KKQ-------IREYMAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       143 ~~~~~~~~~----i~~~-------~~~~~~~~~~~~~~-----~~-~~~-------i~~~~~~g~~~v~~~~~q~v~iar  198 (286)
                      .+..+....    ++++       +..||...-.....     .. .+.       +.+........+++|+.|.++++|
T Consensus        70 ~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaR  149 (237)
T COG0410          70 LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIAR  149 (237)
T ss_pred             CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHH
Confidence            666554331    1222       22232221111100     00 122       233345556789999999999999


Q ss_pred             HHhCCCcEEEEEecCCHH-------HHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVFLAAESEM-------ALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Illd~~~~~-------~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+ |.+++||.|++.       .+.+.+.   +..+.|+..+.+....+      .+.+|+.+|+++|++
T Consensus       150 ALm~~-PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A------l~iaDr~yvle~Gri  215 (237)
T COG0410         150 ALMSR-PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA------LEIADRGYVLENGRI  215 (237)
T ss_pred             HHhcC-CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH------HHhhCEEEEEeCCEE
Confidence            99954 555667777643       3333333   33233555556655555      578999999999965

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=2.4e-21  Score=163.19  Aligned_cols=175  Identities=22%  Similarity=0.243  Sum_probs=125.8

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +.+++++|.|+.   .+.++++.+.+ |+.++|+|+|||||||++++|.|++.            |..|+  ++|.++..
T Consensus         4 i~~~~l~~~y~~~~~~l~~v~~~i~~-Ge~~~i~G~nGsGKSTL~~~l~GLl~------------p~~G~v~~~g~~~~~   70 (235)
T COG1122           4 IEAENLSFRYPGRKAALKDVSLEIEK-GERVLLIGPNGSGKSTLLKLLNGLLK------------PTSGEVLVDGLDTSS   70 (235)
T ss_pred             EEEEEEEEEcCCCceeeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHcCcCc------------CCCCEEEECCeeccc
Confidence            556788888864   78899999998 99999999999999999999999987            66676  56766542


Q ss_pred             -eCHHHHHHHh----h--ccch----hhhheecc-cccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHH
Q 043263          143 -VSKEEFLQMV----D--KNEL----LEYALVYG-DYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       143 -~~~~~~~~~i----~--~~~~----~~~~~~~~-~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~ia  197 (286)
                       .+..+++..+    +  +..+    +.....++ ...+.+.+++.+.             .......+++||+||+++|
T Consensus        71 ~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA  150 (235)
T COG1122          71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA  150 (235)
T ss_pred             hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh
Confidence             2333333332    1  1112    11112222 2334555443332             2334467889999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ..+..+|.++||      ||+.....+.+.+.+..   +.|...++|+++..      ...||+++++++|++
T Consensus       151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~------~~~ad~v~vl~~G~i  217 (235)
T COG1122         151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV------LEYADRVVVLDDGKI  217 (235)
T ss_pred             HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH------HhhCCEEEEEECCEE
Confidence            999989999988      88888888888877643   34788889999986      477999999999765

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.81  E-value=5.1e-18  Score=130.93  Aligned_cols=177  Identities=29%  Similarity=0.394  Sum_probs=148.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC---cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD---SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      |.+|.++|||||||.||+......+.   .+.+.-.++||+...|   |++...++..+|...-.++.|...+..++..|
T Consensus         5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y   81 (192)
T COG3709           5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLSY   81 (192)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence            89999999999999999999877654   4788888999988766   45566678999999888999988999999999


Q ss_pred             CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263          169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                      +++. +|..++..|..+++.+.+..+..+|..+. .-+++.+.+ +.+++.+||.+|++++.+.|..|+.......  ..
T Consensus        82 gip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~-~Llvv~ita-~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~--~~  156 (192)
T COG3709          82 GIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYP-QLLVVCITA-SPEVLAQRLAERGRESREEILARLARAARYT--AG  156 (192)
T ss_pred             cCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhh-cceeEEEec-CHHHHHHHHHHhccCCHHHHHHHHHhhcccc--cC
Confidence            9887 57899999999999999999999999884 333344555 4889999999999999999999998754332  24


Q ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          249 NFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ..|.+-++|+|.++.+.+++..++....
T Consensus       157 ~~dv~~idNsG~l~~ag~~ll~~l~~~~  184 (192)
T COG3709         157 PGDVTTIDNSGELEDAGERLLALLHQDS  184 (192)
T ss_pred             CCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence            6788889999999999999999888654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.1e-21  Score=176.06  Aligned_cols=175  Identities=21%  Similarity=0.263  Sum_probs=118.8

Q ss_pred             HHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++|+++.| +.  .|+++++.+.+ |++++|+||||||||||+++|+|+..            |..|+  ++|.++..
T Consensus         4 l~i~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~llG~sGsGKSTLLr~iaGl~~------------p~~G~I~~~g~~i~~   70 (356)
T PRK11650          4 LKLQAVRKSYDGKTQVIKGIDLDVAD-GEFIVLVGPSGCGKSTLLRMVAGLER------------ITSGEIWIGGRVVNE   70 (356)
T ss_pred             EEEEeEEEEeCCCCEEEeeeeEEEcC-CCEEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECCEECCC
Confidence            5678899999 54  78999999998 99999999999999999999999986            66666  66766544


Q ss_pred             eCHHH--HHHHhhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          143 VSKEE--FLQMVDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 ~~~~~--~~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      .+...  +....++..+..+..+..|+      ++....    .+.++         +......+++|++||+++||+++
T Consensus        71 ~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~  150 (356)
T PRK11650         71 LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV  150 (356)
T ss_pred             CCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence            33322  00011222222222222221      122221    12222         23344567789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++++      ||+.+.+.+.+.|.+   ..+.+...++|++..+      ...||+|+++++|++
T Consensus       151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea------~~l~D~i~vl~~G~i  213 (356)
T PRK11650        151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA------MTLADRVVVMNGGVA  213 (356)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence            88888887      777666766665543   2244777789988775      478999999998876

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.81  E-value=1.1e-18  Score=135.97  Aligned_cols=119  Identities=45%  Similarity=0.787  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      +++|+||+||||||+++.|++.++ .+...+.++||+|+.|+.+|.++++++.+++...+.++.|+++..+.++.|+...
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            479999999999999999999865 5678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecC
Q 043263          173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE  213 (286)
Q Consensus       173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~  213 (286)
                      +.+.+.+.+|..++++++.+.+..++... ....+||+.++
T Consensus        81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~-~~~~~I~i~~~  120 (137)
T cd00071          81 AAVEEALAEGKIVILEIDVQGARQVKKSY-PDAVSIFILPP  120 (137)
T ss_pred             HHHHHHHhCCCeEEEEecHHHHHHHHHcC-CCeEEEEEECC
Confidence            99999999999999999999999998865 56678889987

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.81  E-value=1.1e-21  Score=175.78  Aligned_cols=174  Identities=16%  Similarity=0.198  Sum_probs=119.9

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+..            |+.|+  ++|+++...
T Consensus         5 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~GpsGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~~~~~   71 (353)
T TIGR03265         5 LSIDNIRKRFGAFTALKDISLSVKK-GEFVCLLGPSGCGKTTLLRIIAGLER------------QTAGTIYQGGRDITRL   71 (353)
T ss_pred             EEEEEEEEEeCCeEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHCCCC------------CCceEEEECCEECCCC
Confidence            677899999986  68899999998 99999999999999999999999986            66666  677665433


Q ss_pred             CHHHHHH--H-hhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          144 SKEEFLQ--M-VDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       144 ~~~~~~~--~-i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      .... +.  + .++..++.+..+..|+      .+.+..    .+.++         +......+++|++||+++||+++
T Consensus        72 ~~~~-r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~  150 (353)
T TIGR03265        72 PPQK-RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA  150 (353)
T ss_pred             CHHH-CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence            3221 11  1 1222222222222221      122221    22222         23344567789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++++      ||+.+...+.+.|.+.   .+.+...++|+.+.+      ...||+|+++++|++
T Consensus       151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea------~~l~d~i~vl~~G~i  213 (353)
T TIGR03265       151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA------LSMADRIVVMNHGVI  213 (353)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            88888887      7777677776655542   244777889988876      478999999999976

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.81  E-value=4.2e-21  Score=161.36  Aligned_cols=175  Identities=17%  Similarity=0.188  Sum_probs=113.9

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ++++|+++.|+.    .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++.
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~   68 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITK-GEMVFLVGHSGAGKSTFLKLILGIEK------------PTRGKIRFNGQDLT   68 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEehh
Confidence            356788888842    68899999998 99999999999999999999999986            55665  5665543


Q ss_pred             eeCHHH---HHHHh----hccchhhhheeccc------ccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHH
Q 043263          142 FVSKEE---FLQMV----DKNELLEYALVYGD------YKGIP----KKQIREYM---------AKGYDIVLRVDIQGAR  195 (286)
Q Consensus       142 ~~~~~~---~~~~i----~~~~~~~~~~~~~~------~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~  195 (286)
                      ..+...   ++..+    ++..+.....+..+      ..+..    .+.+.+++         ......+++|++||+.
T Consensus        69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  148 (216)
T TIGR00960        69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVA  148 (216)
T ss_pred             hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence            222211   11111    11111111111111      01111    11222222         2233457788999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLV------ETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeCCcC
Confidence            99999988888888      7777777777766653  234667779988864      357999999988863

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.81  E-value=6.4e-21  Score=160.45  Aligned_cols=172  Identities=22%  Similarity=0.245  Sum_probs=111.9

Q ss_pred             HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +++||++.|+.      +++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~-G~~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~   68 (218)
T cd03255           2 ELKNLSKTYGGGGEKVQALKGVSLSIEK-GEFVAIVGPSGSGKSTLLNILGGLDR------------PTSGEVRVDGTDI   68 (218)
T ss_pred             eEeeeEEEecCCCcceeEEeeeEEEEcC-CCEEEEEcCCCCCHHHHHHHHhCCcC------------CCceeEEECCEeh
Confidence            45677777753      68889999998 99999999999999999999999986            56665  566554


Q ss_pred             eeeCHHHH----HHHh---hcc-------chhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHH
Q 043263          141 FFVSKEEF----LQMV---DKN-------ELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~----~~~i---~~~-------~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~  193 (286)
                      ...+....    +..+   .+.       ...++..+....++..    .+.+.+++         ......+++|++|+
T Consensus        69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  148 (218)
T cd03255          69 SKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR  148 (218)
T ss_pred             hhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence            33222111    1111   111       1112111111111111    11222222         22334567889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..       ..||+++++++|+
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-------~~~d~v~~l~~G~  217 (218)
T cd03255         149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-------EYADRIIELRDGK  217 (218)
T ss_pred             HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-------hhhcEEEEeeCCc
Confidence            9999999988888888      7777777777776653   234667778988763       4799999998885

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.4e-20  Score=150.14  Aligned_cols=174  Identities=21%  Similarity=0.306  Sum_probs=123.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+++||++.|+.  +++++++.+++ |.+.+|+||||+|||||+.+++++.+            .++|+  ++|.++...
T Consensus         2 I~i~nv~K~y~~~~vl~~isl~i~~-g~iTs~IGPNGAGKSTLLS~~sRL~~------------~d~G~i~i~g~~~~~~   68 (252)
T COG4604           2 ITIENVSKSYGTKVVLDDVSLDIPK-GGITSIIGPNGAGKSTLLSMMSRLLK------------KDSGEITIDGLELTST   68 (252)
T ss_pred             eeehhhhHhhCCEEeeccceeeecC-CceeEEECCCCccHHHHHHHHHHhcc------------ccCceEEEeeeecccC
Confidence            568999999998  79999999998 99999999999999999999999986            77787  889888776


Q ss_pred             CHHHHHHHh----hccch-----hhhheecccc---cC-c---cHHHHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263          144 SKEEFLQMV----DKNEL-----LEYALVYGDY---KG-I---PKKQIREYM---------AKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 ~~~~~~~~i----~~~~~-----~~~~~~~~~~---~~-~---~~~~i~~~~---------~~g~~~v~~~~~q~v~iar  198 (286)
                      +.+++...+    +...+     ++....||.+   .| .   ++..+.+++         .+-.+.++|||+||..+|-
T Consensus        69 ~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAM  148 (252)
T COG4604          69 PSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAM  148 (252)
T ss_pred             ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhe
Confidence            666665543    22222     3333334432   12 1   223333332         2233568899999999998


Q ss_pred             HHhCCCcEEEEEecCC-------HH---HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVFLAAES-------EM---ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Illd~~~-------~~---~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .++.+.+ +||||+|-       -.   .+.+|+...-+.|+..+.|+++.+      ..++|+|+-+.+|++
T Consensus       149 VlaQdTd-yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA------S~YsD~IVAlK~G~v  214 (252)
T COG4604         149 VLAQDTD-YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA------SCYSDHIVALKNGKV  214 (252)
T ss_pred             eeeccCc-EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH------HhhhhheeeecCCEE
Confidence            8885555 55555542       11   333455554455888889999887      578999999988865

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.80  E-value=3.8e-21  Score=156.05  Aligned_cols=158  Identities=20%  Similarity=0.228  Sum_probs=109.3

Q ss_pred             HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++|+++.|+.    .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~~~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~~~   68 (173)
T cd03246           2 EVENVSFRYPGAEPPVLRNVSFSIEP-GESLAIIGPSGSGKSTLARLILGLLR------------PTSGRVRLDGADISQ   68 (173)
T ss_pred             EEEEEEEEcCCCCCcceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEECCEEccc
Confidence            35667777753    68888888888 99999999999999999999999986            67776  67776654


Q ss_pred             eCHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHH
Q 043263          143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEM  216 (286)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~  216 (286)
                      .+...++..+   .++....   ..+..   .+.+.+      +.+|+.|++.+|++++.+|+++|+      ||+.+..
T Consensus        69 ~~~~~~~~~i---~~~~q~~---~~~~~---tv~~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~  133 (173)
T cd03246          69 WDPNELGDHV---GYLPQDD---ELFSG---SIAENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER  133 (173)
T ss_pred             CCHHHHHhhe---EEECCCC---ccccC---cHHHHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHH
Confidence            4443333221   1111000   01110   111111      788999999999999988888888      7777777


Q ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          217 ALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       217 ~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+.+.|.+.  .+.+...++|++..       ...||+++++++|++
T Consensus       134 ~l~~~l~~~~~~~~tii~~sh~~~~-------~~~~d~v~~l~~G~i  173 (173)
T cd03246         134 ALNQAIAALKAAGATRIVIAHRPET-------LASADRILVLEDGRV  173 (173)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHH-------HHhCCEEEEEECCCC
Confidence            777776653  23366677888765       356999999988863

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.7e-21  Score=174.31  Aligned_cols=176  Identities=20%  Similarity=0.279  Sum_probs=120.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++.            |+.|+  ++|.++..
T Consensus         6 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~~i~~   72 (351)
T PRK11432          6 FVVLKNITKRFGSNTVIDNLNLTIKQ-GTMVTLLGPSGCGKTTVLRLVAGLEK------------PTEGQIFIDGEDVTH   72 (351)
T ss_pred             EEEEEeEEEEECCeEEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECCEECCC
Confidence            4778899999975  68999999998 99999999999999999999999987            66666  66765543


Q ss_pred             eCHHH--HHHHhhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          143 VSKEE--FLQMVDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 ~~~~~--~~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      .+...  +....++..++.+..+..|+      ++....    .+.++         .......+++|+.||+++||+++
T Consensus        73 ~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~  152 (351)
T PRK11432         73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI  152 (351)
T ss_pred             CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence            33221  00011222222222222221      122222    22222         22334567789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++++      ||+...+.+.+.|.+.   .+.+...++|+.+.+      ...||+|+++++|++
T Consensus       153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~------~~laD~i~vm~~G~i  215 (351)
T PRK11432        153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA------FAVSDTVIVMNKGKI  215 (351)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            89888888      7777777776655542   244777889988876      478999999999976

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.80  E-value=4.3e-21  Score=163.94  Aligned_cols=174  Identities=17%  Similarity=0.222  Sum_probs=114.1

Q ss_pred             HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +++||++.|+.   .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 ~~~~l~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~   68 (241)
T cd03256           2 EVENLSKTYPNGKKALKDVSLSINP-GEFVALIGPSGAGKSTLLRCLNGLVE------------PTSGSVLIDGTDINKL   68 (241)
T ss_pred             EEeeEEEecCCccEEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCCceEEECCEecccc
Confidence            35677888863   68999999998 99999999999999999999999986            56665  566655433


Q ss_pred             CH---HHHHHHh---hcc-chhhhheecccc--------------cCc----cHHHHHHH---------HhcCCcEEEEe
Q 043263          144 SK---EEFLQMV---DKN-ELLEYALVYGDY--------------KGI----PKKQIREY---------MAKGYDIVLRV  189 (286)
Q Consensus       144 ~~---~~~~~~i---~~~-~~~~~~~~~~~~--------------~~~----~~~~i~~~---------~~~g~~~v~~~  189 (286)
                      +.   ..++..+   .+. .+.....+..++              .+.    ..+.+.+.         .......+++|
T Consensus        69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G  148 (241)
T cd03256          69 KGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGG  148 (241)
T ss_pred             CHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHH
Confidence            31   1222211   111 111111111110              000    11122222         22233457789


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|+
T Consensus       149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~------~~~~d~v~~l~~G~  222 (241)
T cd03256         149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA------REYADRIVGLKDGR  222 (241)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCE
Confidence            99999999999988888887      7777677777776653   234677789988875      35899999999887


Q ss_pred             H
Q 043263          261 L  261 (286)
Q Consensus       261 i  261 (286)
                      +
T Consensus       223 i  223 (241)
T cd03256         223 I  223 (241)
T ss_pred             E
Confidence            5

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.80  E-value=2.1e-21  Score=176.08  Aligned_cols=175  Identities=15%  Similarity=0.222  Sum_probs=120.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |.+|+  ++|.++...
T Consensus         4 L~~~nls~~y~~~~vL~~vs~~i~~-Geiv~liGpNGaGKSTLLk~LaGll~------------p~sG~I~l~G~~i~~~   70 (402)
T PRK09536          4 IDVSDLSVEFGDTTVLDGVDLSVRE-GSLVGLVGPNGAGKTTLLRAINGTLT------------PTAGTVLVAGDDVEAL   70 (402)
T ss_pred             EEEeeEEEEECCEEEEEeeEEEECC-CCEEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCEEcCcC
Confidence            567899999986  79999999998 99999999999999999999999986            66776  677766554


Q ss_pred             CHHHHHHHh----hccch------hhhheecc-----cccC---ccHHHHHHHH---------hcCCcEEEEeCHHHHHH
Q 043263          144 SKEEFLQMV----DKNEL------LEYALVYG-----DYKG---IPKKQIREYM---------AKGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~~~~~~i----~~~~~------~~~~~~~~-----~~~~---~~~~~i~~~~---------~~g~~~v~~~~~q~v~i  196 (286)
                      +..+++..+    ++..+      .++..+..     ....   ...+.+.+++         .+....+++|++||+.+
T Consensus        71 ~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I  150 (402)
T PRK09536         71 SARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL  150 (402)
T ss_pred             CHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            544444322    11111      11111100     0100   1122233332         22334567889999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      .+.||+++++++|++
T Consensus       151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~------~~~adrii~l~~G~i  217 (402)
T PRK09536        151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLA------ARYCDELVLLADGRV  217 (402)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            9999988888888      7776666666665543  234667779999886      478999999998865

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=4.2e-21  Score=171.75  Aligned_cols=175  Identities=19%  Similarity=0.249  Sum_probs=117.0

Q ss_pred             HHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+    .  +++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.+
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~-Gei~~iiG~nGsGKSTLlk~L~Gl~~------------p~~G~I~~~g~~   68 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPA-GEIFGVIGASGAGKSTLIRCINLLER------------PTSGRVLVDGQD   68 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEE
Confidence            45678888886    2  68999999998 99999999999999999999999986            66666  66766


Q ss_pred             eeeeCHHHH---HHHh----hccch------hhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHH
Q 043263          140 YFFVSKEEF---LQMV----DKNEL------LEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~---~~~i----~~~~~------~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~  193 (286)
                      +...+....   +..+    ++..+      .++..+....++....    .+.+.+         ......+++|++|+
T Consensus        69 i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qR  148 (343)
T PRK11153         69 LTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQR  148 (343)
T ss_pred             CCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence            544333322   1111    11111      2221111111122221    122222         22234567899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i------~~~~d~v~~l~~G~i  219 (343)
T PRK11153        149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV------KRICDRVAVIDAGRL  219 (343)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888877      7777677777766653   234677779988875      367999999988865

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.80  E-value=1.6e-20  Score=157.21  Aligned_cols=172  Identities=23%  Similarity=0.249  Sum_probs=111.7

Q ss_pred             hHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           70 LRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        70 ~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++|+++.|+.    +++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~-G~~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   68 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKK-GEFVLIVGPNGSGKSTLLRLLNGLLG------------PTSGEVLVDGKDLTKL   68 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEEcccC
Confidence            4567777753    58888998887 99999999999999999999999986            56665  566554332


Q ss_pred             CHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHH
Q 043263          144 SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       144 ~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iara  199 (286)
                      +...++..+   .+.        ...++.......++...    +.+.+.         +......+++|++|++.+|++
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  148 (211)
T cd03225          69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV  148 (211)
T ss_pred             CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            222222211   111        11111111000111111    111222         233345577899999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++.+|+++|+      ||+.+...+.+.|.+..  +.+...++|++...      ...||+|+++++|+
T Consensus       149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~G~  211 (211)
T cd03225         149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL------LELADRVIVLEDGK  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEeCCC
Confidence            9988888888      77777777777776532  34667778988764      35699999998774

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.80  E-value=1.6e-20  Score=157.54  Aligned_cols=174  Identities=13%  Similarity=0.171  Sum_probs=113.3

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++|+++.|+ .  ++.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~-G~~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~~~   68 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRK-GEFLFLTGPSGAGKTTLLKLLYGALT------------PSRGQVRIAGEDVNR   68 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEccc
Confidence            35677888883 2  78999999998 99999999999999999999999986            55665  55655433


Q ss_pred             eCHHH---HHHHh----hcc------chhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHH
Q 043263          143 VSKEE---FLQMV----DKN------ELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGART  196 (286)
Q Consensus       143 ~~~~~---~~~~i----~~~------~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~i  196 (286)
                      .+...   ++..+    ++.      ...++........+..    .+.+.+.+         ......+++|++|++.+
T Consensus        69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  148 (214)
T TIGR02673        69 LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAI  148 (214)
T ss_pred             CCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence            22211   11111    111      1112111110011111    11222222         22234567789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|+
T Consensus       149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~------~~~~d~i~~l~~G~  214 (214)
T TIGR02673       149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV------DRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCEEEEecCCC
Confidence            9999988888888      7777777777777653  234677779988874      35799999998874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.80  E-value=5.1e-21  Score=168.52  Aligned_cols=174  Identities=19%  Similarity=0.233  Sum_probs=119.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|++++|+.  +++++++.+.+ |+++||+|||||||||++++|+|++.            |..|+  ++|.++.. 
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~-Gei~~l~G~NGaGKTTLl~~l~Gl~~------------~~~G~i~i~g~~~~~-   68 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQK-GRIVGFLGPNGAGKSTTMKIITGYLP------------PDSGSVQVCGEDVLQ-   68 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc-
Confidence            457788888875  79999999998 99999999999999999999999986            66666  66765532 


Q ss_pred             CHHHHHHHh----hccch------hhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHH
Q 043263          144 SKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       144 ~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral  200 (286)
                      .....+..+    +...+      .++..+....++...    +.+.+.+         .+....+++|++|++.+|+++
T Consensus        69 ~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al  148 (301)
T TIGR03522        69 NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL  148 (301)
T ss_pred             ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence            222222221    11111      222222222233321    2222222         222345667899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+...+++.+.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~------~~~~d~i~~l~~G~i  210 (301)
T TIGR03522       149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV------EAICDRVIIINKGKI  210 (301)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            999988888      88887788877776542 33566668988865      368999999988865

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.80  E-value=2.3e-21  Score=174.71  Aligned_cols=177  Identities=17%  Similarity=0.222  Sum_probs=120.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus        14 ~L~l~~l~~~~~~~~~l~~vsl~i~~-Ge~~~LlGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~~i~~   80 (375)
T PRK09452         14 LVELRGISKSFDGKEVISNLDLTINN-GEFLTLLGPSGCGKTTVLRLIAGFET------------PDSGRIMLDGQDITH   80 (375)
T ss_pred             eEEEEEEEEEECCeEEEeeeEEEEeC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECCC
Confidence            4788999999986  68899999998 99999999999999999999999986            66666  66765543


Q ss_pred             eCHHHH--HHHhhccchhhhheecccc------cCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          143 VSKEEF--LQMVDKNELLEYALVYGDY------KGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 ~~~~~~--~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      ......  ....++..++.+..+..|+      ++....    .+.++         +......+++|++||+++||+++
T Consensus        81 ~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~  160 (375)
T PRK09452         81 VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV  160 (375)
T ss_pred             CCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence            332210  0011222222222222221      122221    22222         23333557789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      .+|+++++      ||+...+.+.+.|.+   ..+.+...++|+...+      ...||+|+++++|++.
T Consensus       161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea------~~laDri~vl~~G~i~  224 (375)
T PRK09452        161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA------LTMSDRIVVMRDGRIE  224 (375)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence            88887777      666666666665554   2244777789988875      4789999999999763

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.80  E-value=8.6e-21  Score=159.10  Aligned_cols=172  Identities=21%  Similarity=0.279  Sum_probs=110.7

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee--
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF--  142 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~--  142 (286)
                      +++|+++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..  
T Consensus         2 ~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~~   68 (213)
T cd03259           2 ELKGLSKTYGSVRALDDLSLTVEP-GEFLALLGPSGCGKTTLLRLIAGLER------------PDSGEILIDGRDVTGVP   68 (213)
T ss_pred             eeeeeEEEeCCeeeecceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEcCcCc
Confidence            45678888865  78999999998 99999999999999999999999986            44444  44443221  


Q ss_pred             --------eCHHHHHHHhhccchhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263          143 --------VSKEEFLQMVDKNELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 --------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~  201 (286)
                              +.+..  .........++..+....++..    .+.+.+.+         ......+++|++|++.+|++++
T Consensus        69 ~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~  146 (213)
T cd03259          69 PERRNIGMVFQDY--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA  146 (213)
T ss_pred             hhhccEEEEcCch--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence                    11100  0111111222211110111111    11122221         2223457789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~v~~l~~G~i  209 (213)
T cd03259         147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA------LALADRIAVMNEGRI  209 (213)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH------HHhcCEEEEEECCEE
Confidence            88888887      7777677777766653   234667778988764      367999999998875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.80  E-value=1.2e-20  Score=194.60  Aligned_cols=173  Identities=13%  Similarity=0.217  Sum_probs=126.8

Q ss_pred             HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--c-CCc
Q 043263           67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--V-NGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~-~g~  138 (286)
                      .++++||+|.|+.     +|+++++.+++ |++++|+||||||||||+++|+++++            |.+|+  + +|.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~-Ge~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~i~~g~  448 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTE-GKTYAFVGESGCGKSTILKLIERLYD------------PTEGDIIINDSH  448 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcC-CCEEEEECCCCCCHHHHHHHHHHhcc------------CCCCeEEEeCCc
Confidence            5899999999973     69999999998 99999999999999999999999997            77777  5 456


Q ss_pred             ceeeeCHHHHHHHh---hccch------hhhheecccc------------------------------------------
Q 043263          139 DYFFVSKEEFLQMV---DKNEL------LEYALVYGDY------------------------------------------  167 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~------------------------------------------  167 (286)
                      ++...+...++..+   .|...      .++.. ++..                                          
T Consensus       449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (1466)
T PTZ00265        449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIK-YSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN  527 (1466)
T ss_pred             chhhCCHHHHHHhccEecccccchhccHHHHHH-hcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence            66655655555533   33322      22221 1100                                          


Q ss_pred             --------------cCccHHHHHHH------------HhcCCc--------EEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263          168 --------------KGIPKKQIREY------------MAKGYD--------IVLRVDIQGARTLRRILGDSAVFVF----  209 (286)
Q Consensus       168 --------------~~~~~~~i~~~------------~~~g~~--------~v~~~~~q~v~iaral~~~~~~~Il----  209 (286)
                                    .....+.+.++            ++.|++        .+++|++||+++||+++.+|+++||    
T Consensus       528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT  607 (1466)
T PTZ00265        528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT  607 (1466)
T ss_pred             ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence                          00122223222            344444        3456899999999999999999999    


Q ss_pred             --EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          210 --LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       210 --ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                        ||+.++..+.+.|.+.   .+.|...++||+++       +..||+|+++++|+
T Consensus       608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-------i~~aD~Iivl~~g~  656 (1466)
T PTZ00265        608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-------IRYANTIFVLSNRE  656 (1466)
T ss_pred             cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-------HHhCCEEEEEeCCc
Confidence              8888888888877764   24588889999988       46899999998874

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.80  E-value=4.5e-21  Score=169.12  Aligned_cols=174  Identities=17%  Similarity=0.176  Sum_probs=116.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         5 i~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~   71 (303)
T TIGR01288         5 IDLVGVSKSYGDKVVVNDLSFTIAR-GECFGLLGPNGAGKSTIARMLLGMIS------------PDRGKITVLGEPVPSR   71 (303)
T ss_pred             EEEEeEEEEeCCeEEEcceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECccc
Confidence            678899999975  79999999998 99999999999999999999999986            55665  556544221


Q ss_pred             CHHHHHHHh----hcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHH
Q 043263          144 SKEEFLQMV----DKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       144 ~~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral  200 (286)
                       ....+..+    ++.      ...++..++...++....    .+.+.+         ......+++|++|++.+|+++
T Consensus        72 -~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al  150 (303)
T TIGR01288        72 -ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL  150 (303)
T ss_pred             -HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence             11112111    111      112222211112222211    122221         222345667899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~------~~~~d~i~~l~~G~i  213 (303)
T TIGR01288       151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA------ERLCDRLCVLESGRK  213 (303)
T ss_pred             hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence            988888888      7777777777766553  234677779988875      367999999988864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.80  E-value=1.2e-20  Score=161.43  Aligned_cols=176  Identities=17%  Similarity=0.175  Sum_probs=114.9

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +.++||++.|+ .  +++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~   68 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINP-GEFVAIIGPSGAGKSTLLRCINRLVE------------PSSGSILLEGTDITK   68 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCccEEEECCEEhhh
Confidence            35678888887 4  78999999998 99999999999999999999999986            66666  56665433


Q ss_pred             eCHHH---HHHHh----hccchhhhheecccc--------------cC----ccHHHHHHH---------HhcCCcEEEE
Q 043263          143 VSKEE---FLQMV----DKNELLEYALVYGDY--------------KG----IPKKQIREY---------MAKGYDIVLR  188 (286)
Q Consensus       143 ~~~~~---~~~~i----~~~~~~~~~~~~~~~--------------~~----~~~~~i~~~---------~~~g~~~v~~  188 (286)
                      .+...   ++..+    +...+.....+..++              ..    ...+.+.+.         +......+++
T Consensus        69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  148 (243)
T TIGR02315        69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSG  148 (243)
T ss_pred             CCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCH
Confidence            22211   12211    111111111111110              00    001122222         2223345778


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      |++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|
T Consensus       149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~------~~~~d~v~~l~~G  222 (243)
T TIGR02315       149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA------KKYADRIVGLKAG  222 (243)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCeEEEEECC
Confidence            999999999999988888877      7776677776666543   234667779988874      3679999999988


Q ss_pred             CHH
Q 043263          260 KLD  262 (286)
Q Consensus       260 ~i~  262 (286)
                      ++.
T Consensus       223 ~i~  225 (243)
T TIGR02315       223 EIV  225 (243)
T ss_pred             EEE
Confidence            753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.2e-20  Score=161.17  Aligned_cols=175  Identities=18%  Similarity=0.164  Sum_probs=114.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         4 l~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~   70 (241)
T PRK14250          4 IEFKEVSYSSFGKEILKDISVKFEG-GAIYTIVGPSGAGKSTLIKLINRLID------------PTEGSILIDGVDIKTI   70 (241)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEhhhc
Confidence            567788888865  78999999998 99999999999999999999999986            55565  556544322


Q ss_pred             CHHHHHHHh---hcc------chhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          144 SKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       144 ~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      +...++..+   .+.      ...++..+.....+.....+.+.          .......+++|++|++.+|++++.+|
T Consensus        71 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p  150 (241)
T PRK14250         71 DVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNP  150 (241)
T ss_pred             ChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            222222211   111      11222111000111111112221          22334457789999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          205 AVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~------~~~~d~i~~l~~G~i  210 (241)
T PRK14250        151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA------KRIGDYTAFLNKGIL  210 (241)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH------HHhCCEEEEEeCCEE
Confidence            88777      7776677776666543   234777779988874      367999999998865

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.80  E-value=8.8e-21  Score=158.13  Aligned_cols=170  Identities=18%  Similarity=0.132  Sum_probs=109.9

Q ss_pred             hHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           70 LRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        70 ~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      ++|+++.|+.   .+.++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..  
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~--   66 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYA-GEIIALTGKNGAGKTTLAKILAGLIK------------ESSGSILLNGKPIKA--   66 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEEhhh--
Confidence            4677777753   68889999988 99999999999999999999999986            55665  45544311  


Q ss_pred             HHHHHHH---hhc--------cchhhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          145 KEEFLQM---VDK--------NELLEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       145 ~~~~~~~---i~~--------~~~~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                       ...+..   +.+        ....++..+....+....+.+.+++         ......+++|++|++.+|++++.+|
T Consensus        67 -~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  145 (205)
T cd03226          67 -KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK  145 (205)
T ss_pred             -HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence             111110   011        1122222111111111112233332         2223456788999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i  204 (205)
T cd03226         146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL------AKVCDRVLLLANGAI  204 (205)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            87777      7777677777776653  233667778988774      357999999988864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=8.6e-21  Score=165.40  Aligned_cols=174  Identities=13%  Similarity=0.145  Sum_probs=116.9

Q ss_pred             HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           68 ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        68 i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +.++||++.|+.     .|.++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i   71 (279)
T PRK13650          5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQ-GEWLSIIGHNGSGKSTTVRLIDGLLE------------AESGQIIIDGDLL   71 (279)
T ss_pred             EEEEeEEEEcCCCCcCeeeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEC
Confidence            567888888852     78999999998 99999999999999999999999986            66666  667665


Q ss_pred             eeeCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          141 FFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      ...+...++..+   .+.        ...++..+.....+...+    .+.++         .......+++|++|++.+
T Consensus        72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~l  151 (279)
T PRK13650         72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI  151 (279)
T ss_pred             CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence            433333332221   111        112222111011122221    12222         233335667789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.   .+.|...++|++...       ..||+|+++++|++
T Consensus       152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-------~~~dri~~l~~G~i  218 (279)
T PRK13650        152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-------ALSDRVLVMKNGQV  218 (279)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-------HhCCEEEEEECCEE
Confidence            9999988888888      7777677776666543   244777889988773       46999999988864

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.79  E-value=1e-20  Score=159.38  Aligned_cols=173  Identities=18%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  ++|.++... 
T Consensus         2 ~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~~~-   67 (220)
T cd03265           2 EVENLVKKYGDFEAVRGVSFRVRR-GEIFGLLGPNGAGKTTTIKMLTTLLK------------PTSGRATVAGHDVVRE-   67 (220)
T ss_pred             EEEEEEEEECCEEeeeceeEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEecCcC-
Confidence            45678888865  78899999998 99999999999999999999999986            55555  445443211 


Q ss_pred             HHHHHHHh----hccch------hhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          145 KEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      ....+..+    ++..+      .++.......++...    +.+.+.         .......+++|++|++.+|++++
T Consensus        68 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~  147 (220)
T cd03265          68 PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLV  147 (220)
T ss_pred             hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence            11111111    11111      111111001111111    112222         22233457789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++|+      ||+.+.+.+.+.|.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~------~~~~d~i~~l~~G~i  210 (220)
T cd03265         148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA------EQLCDRVAIIDHGRI  210 (220)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence            88888888      7777777777766653   134667778988874      367999999999976

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.79  E-value=6.9e-21  Score=159.10  Aligned_cols=172  Identities=22%  Similarity=0.197  Sum_probs=113.0

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |.+|+  ++|.++... 
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~-   67 (208)
T cd03268           2 KTNDLTKTYGKKRVLDDISLHVKK-GEIYGFLGPNGAGKTTTMKIILGLIK------------PDSGEITFDGKSYQKN-   67 (208)
T ss_pred             EEEEEEEEECCeEeEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCCcccch-
Confidence            45678888864  78999999998 99999999999999999999999986            55565  556544221 


Q ss_pred             HHHHHHHh----hccch------hhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          145 KEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                       ..+...+    +...+      .++.......++...+.+.+.         .......+++|++|++.+|++++.+|+
T Consensus        68 -~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  146 (208)
T cd03268          68 -IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD  146 (208)
T ss_pred             -HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence             1111111    11111      121111111111122222222         222334577899999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~------~~~~d~v~~l~~g~i  204 (208)
T cd03268         147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEI------QKVADRIGIINKGKL  204 (208)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HHhcCEEEEEECCEE
Confidence            8777      7777777777766643  234667778988874      367999999998875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.79  E-value=3e-21  Score=173.33  Aligned_cols=175  Identities=15%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC--CC--cCCccee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP--GE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~--G~--~~g~~~~  141 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++.            |..  |+  ++|.++.
T Consensus         6 l~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~~~G~i~~~g~~~~   72 (362)
T TIGR03258         6 IRIDHLRVAYGANTVLDDLSLEIEA-GELLALIGKSGCGKTTLLRAIAGFVK------------AAGLTGRIAIADRDLT   72 (362)
T ss_pred             EEEEEEEEEECCeEEEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCCEEEEECCEECC
Confidence            677899999986  78999999998 99999999999999999999999986            555  65  5666543


Q ss_pred             eeCHHH--HHHHhhccchhhhheeccc------ccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263          142 FVSKEE--FLQMVDKNELLEYALVYGD------YKGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       142 ~~~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral  200 (286)
                      ......  +....++..+..+..+..|      .++....    .+.++         +......+++|++||+++||++
T Consensus        73 ~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL  152 (362)
T TIGR03258        73 HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI  152 (362)
T ss_pred             CCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence            322211  0001122222222222222      1122221    22222         2333455778899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHH---hc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVE---RK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~---r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++++      ||+.....+.+.|.+   .. +.+...++|+++.+      ...||+|+++++|++
T Consensus       153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea------~~l~dri~vl~~G~i  217 (362)
T TIGR03258       153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA------LTLADKAGIMKDGRL  217 (362)
T ss_pred             hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            988888888      777777777665553   22 34677789988875      478999999998865

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.79  E-value=1.8e-20  Score=159.25  Aligned_cols=174  Identities=13%  Similarity=0.137  Sum_probs=113.8

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~   68 (232)
T cd03218           2 RAENLSKRYGKRKVVNGVSLSVKQ-GEIVGLLGPNGAGKTTTFYMIVGLVK------------PDSGKILLDGQDITKLP   68 (232)
T ss_pred             eEEEEEEEeCCEEeeccceeEecC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEecccCC
Confidence            45778888875  78999999998 99999999999999999999999986            55665  5565443222


Q ss_pred             HHHHH-HH---h-hccc------hhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263          145 KEEFL-QM---V-DKNE------LLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       145 ~~~~~-~~---i-~~~~------~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral  200 (286)
                      ..... ..   + +...      ..++.......++...    +.+.+.         .......+++|++|++.+|+++
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  148 (232)
T cd03218          69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL  148 (232)
T ss_pred             HhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            22211 10   1 1111      1111111101111111    112222         2223345678899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+.+.+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i  211 (232)
T cd03218         149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET------LSITDRAYIIYEGKV  211 (232)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCeE
Confidence            988888888      7777777777766543  233666778988764      478999999999876

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.79  E-value=1e-20  Score=158.43  Aligned_cols=172  Identities=20%  Similarity=0.269  Sum_probs=113.3

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ | +++|+||||||||||+++|+|+++            |.+|+  ++|.++...+
T Consensus         2 ~~~~~~~~~~~~~~l~~vs~~i~~-g-~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~   67 (211)
T cd03264           2 QLENLTKRYGKKRALDGVSLTLGP-G-MYGLLGPNGAGKTTLMRILATLTP------------PSSGTIRIDGQDVLKQP   67 (211)
T ss_pred             EEEEEEEEECCEEEEcceeEEEcC-C-cEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCCccccch
Confidence            45678888865  78999999998 9 999999999999999999999986            56666  5666543322


Q ss_pred             HHHHHHHh----hccch------hhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          145 KEEFLQMV----DKNEL------LEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                       ..++..+    ++..+      .++..+.....+..    .+.+.++         +......+++|++|++.+|++++
T Consensus        68 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  146 (211)
T cd03264          68 -QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV  146 (211)
T ss_pred             -HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHh
Confidence             2222211    11111      11111110011111    1112222         22233457788999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++|+      ||+.+.+.+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~g~i  207 (211)
T cd03264         147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV------ESLCNQVAVLNKGKL  207 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            88888888      77777777777776532 34666778988874      357999999998875

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=7.8e-21  Score=165.23  Aligned_cols=175  Identities=18%  Similarity=0.142  Sum_probs=117.0

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++|+++.|+ .  +++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         5 l~~~~l~~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   71 (274)
T PRK13647          5 IEVEDLHFRYKDGTKALKGLSLSIPE-GSKTALLGPNGAGKSTLLLHLNGIYL------------PQRGRVKVMGREVNA   71 (274)
T ss_pred             EEEEEEEEEeCCCCeeeeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCceEEEECCEECCC
Confidence            56788888885 2  79999999998 99999999999999999999999986            56665  56655432


Q ss_pred             eCHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263          143 VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       143 ~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iar  198 (286)
                      .+....+..+   .+.        .+.++..+.....+...    +.+.+++         ......+++|++|++.+|+
T Consensus        72 ~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~lar  151 (274)
T PRK13647         72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAG  151 (274)
T ss_pred             CCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHH
Confidence            2222222211   111        11222211100011111    1222222         2233456678999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.|.+..  +.+...++|+++..      .+.||+|+++++|++
T Consensus       152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~------~~~~d~i~~l~~G~i  216 (274)
T PRK13647        152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA------AEWADQVIVLKEGRV  216 (274)
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            99988888888      77777777777665432  44777889998874      368999999988875

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.79  E-value=6.3e-21  Score=155.46  Aligned_cols=162  Identities=17%  Similarity=0.209  Sum_probs=108.6

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~i~~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~   68 (178)
T cd03229           2 ELKNVSKRYGQKTVLNDVSLNIEA-GEIVALLGPSGSGKSTLLRCIAGLEE------------PDSGSILIDGEDLTDLE   68 (178)
T ss_pred             EEEEEEEEECCeEEEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccc
Confidence            35677777764  68899999998 99999999999999999999999986            66776  6676554332


Q ss_pred             --HHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHH
Q 043263          145 --KEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEM  216 (286)
Q Consensus       145 --~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~  216 (286)
                        ...+...+   .++.....  .....+   +.+.+.   ..+++|++|++.++++++.+|+++|+      ||+.+..
T Consensus        69 ~~~~~~~~~i---~~~~q~~~--~~~~~t---~~~~l~---~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~  137 (178)
T cd03229          69 DELPPLRRRI---GMVFQDFA--LFPHLT---VLENIA---LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR  137 (178)
T ss_pred             hhHHHHhhcE---EEEecCCc--cCCCCC---HHHhee---ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence              12222211   11110000  000111   111111   01778999999999999989988888      7777777


Q ss_pred             HHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          217 ALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       217 ~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .+.+.|.+..   +.+...++|+....      ...||+++++++|+
T Consensus       138 ~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~g~  178 (178)
T cd03229         138 EVRALLKSLQAQLGITVVLVTHDLDEA------ARLADRVVVLRDGK  178 (178)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEeCCC
Confidence            7777766532   34666778887764      25799999998763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.79  E-value=9.9e-21  Score=159.75  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=114.9

Q ss_pred             HHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++|+++.| +.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |.+|+  ++|.++..
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~   68 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRP-GEMAFLTGHSGAGKSTLLKLICGIER------------PSAGKIWFSGHDITR   68 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc
Confidence            3467788888 43  78999999998 99999999999999999999999986            55665  55655543


Q ss_pred             eCHHH---HHHHh----hccch------hhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          143 VSKEE---FLQMV----DKNEL------LEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       143 ~~~~~---~~~~i----~~~~~------~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      .+...   ++..+    +...+      .++..+....++...+    .+.++         +......+++|++|++.+
T Consensus        69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  148 (222)
T PRK10908         69 LKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGI  148 (222)
T ss_pred             CChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHH
Confidence            32221   11111    11111      1211111001111111    12222         223334567789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      |++++.+|+++|+      ||+.+.+.+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++..
T Consensus       149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI------SRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEEcc
Confidence            9999988888887      7776667777766643  234667778988874      36799999999887643

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.79  E-value=1.5e-20  Score=157.58  Aligned_cols=174  Identities=19%  Similarity=0.222  Sum_probs=112.2

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee--
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF--  142 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~--  142 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..  
T Consensus         2 ~~~~l~~~~~~~~~l~~~s~~i~~-G~~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~   68 (213)
T cd03262           2 EIKNLHKSFGDFHVLKGIDLTVKK-GEVVVIIGPSGSGKSTLLRCINLLEE------------PDSGTIIIDGLKLTDDK   68 (213)
T ss_pred             EEEEEEEEECCeEeecCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCccc
Confidence            45678888875  78999999998 99999999999999999999999986            55665  55654421  


Q ss_pred             eCHHHHHHHh----hcc------chhhhheeccc-ccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHH
Q 043263          143 VSKEEFLQMV----DKN------ELLEYALVYGD-YKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       143 ~~~~~~~~~i----~~~------~~~~~~~~~~~-~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iar  198 (286)
                      .....++..+    ++.      ...++...... .++...    +.+.+.         +......+++|+.|++.+++
T Consensus        69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~  148 (213)
T cd03262          69 KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIAR  148 (213)
T ss_pred             hhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHH
Confidence            1111111111    111      11222111100 111111    112222         23333457788999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+.+.+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~------~~~~d~i~~l~~g~i  213 (213)
T cd03262         149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFA------REVADRVIFMDDGRI  213 (213)
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEeCCcC
Confidence            99988888877      7776677777766653  234666778988774      367999999988763

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.79  E-value=9.5e-21  Score=161.32  Aligned_cols=174  Identities=17%  Similarity=0.214  Sum_probs=113.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |.+|+  ++|.++...
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~i~~~   68 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRP-GEFVALLGPNGAGKSTLFSLLTRLYV------------AQEGQISVAGHDLRRA   68 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEcccC
Confidence            346778888864  68999999998 99999999999999999999999986            55555  455544322


Q ss_pred             CHHHHHH--Hhhcc-------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263          144 SKEEFLQ--MVDKN-------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       144 ~~~~~~~--~i~~~-------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~  201 (286)
                      +......  .+.+.       ...++.......++...    +.+.+.+         ......+++|++|++.+|++++
T Consensus        69 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~  148 (236)
T TIGR03864        69 PRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALL  148 (236)
T ss_pred             ChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence            2211111  01111       11222111111111111    1122222         2233456678999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..       ..||+++++++|++
T Consensus       149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-------~~~d~i~~l~~G~i  210 (236)
T TIGR03864       149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI-------EADDRLVVLHRGRV  210 (236)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH-------hhCCEEEEEeCCeE
Confidence            99988888      8888777777776653   234667778988773       45999999988875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.79  E-value=1.7e-20  Score=168.13  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=113.5

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHH----HHHh-
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEF----LQMV-  152 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~----~~~i-  152 (286)
                      .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+...+    +..+ 
T Consensus         8 ~l~~vs~~i~~-Gei~~l~G~sGsGKSTLLr~L~Gl~~------------p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~   74 (363)
T TIGR01186         8 GVNDADLAIAK-GEIFVIMGLSGSGKSTTVRMLNRLIE------------PTAGQIFIDGENIMKQSPVELREVRRKKIG   74 (363)
T ss_pred             eEEeeEEEEcC-CCEEEEECCCCChHHHHHHHHhCCCC------------CCceEEEECCEECCcCCHHHHHHHHhCcEE
Confidence            57788888887 99999999999999999999999987            77776  78887766665554    2111 


Q ss_pred             ---hccchhhhheeccc------ccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          153 ---DKNELLEYALVYGD------YKGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       153 ---~~~~~~~~~~~~~~------~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                         ++..++.+..+..|      ..+...+    .+.++         +......+++|++||+.+||+++.+|+++++ 
T Consensus        75 ~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD  154 (363)
T TIGR01186        75 MVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD  154 (363)
T ss_pred             EEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence               22222222222222      1222221    12222         2333445678899999999999988888888 


Q ss_pred             -----EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 -----LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                           ||+.+...+.+.+.+   ..+.|...++|+++.+      .+.||+|+++++|++
T Consensus       155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea------~~~~drI~vl~~G~i  208 (363)
T TIGR01186       155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA------IRIGDRIVIMKAGEI  208 (363)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence                 777777777766653   2245778889999876      478999999998875

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.79  E-value=9.5e-21  Score=160.37  Aligned_cols=174  Identities=21%  Similarity=0.235  Sum_probs=114.6

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc-----CcceeeeeecccCCCCCC--cCCcc
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR-----DSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-----~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++     +            |.+|+  ++|.+
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~------------~~~G~i~~~g~~   68 (227)
T cd03260           2 ELRDLNVYYGDKHALKDISLDIPK-GEITALIGPSGCGKSTLLRLLNRLNDLIPGA------------PDEGEVLLDGKD   68 (227)
T ss_pred             EEEEEEEEcCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccccCC------------CCCeEEEECCEE
Confidence            45778888875  78999999998 9999999999999999999999997     5            55565  56655


Q ss_pred             eeeeC--HHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHHH---------hcC--CcEEEEeCHH
Q 043263          140 YFFVS--KEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREYM---------AKG--YDIVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~--~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~~---------~~g--~~~v~~~~~q  192 (286)
                      +...+  ...++..+   .+.      ...++.......++. .    .+.+.+.+         ...  ...+++|++|
T Consensus        69 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q  148 (227)
T cd03260          69 IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ  148 (227)
T ss_pred             hhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence            43222  11222211   111      112221111111111 1    11222221         222  2567788999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+... .+...++|+++..      ...||+++++++|++
T Consensus       149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i  218 (227)
T cd03260         149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQA------ARVADRTAFLLNGRL  218 (227)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHH------HHhCCEEEEEeCCEE
Confidence            99999999988888888      777777777777765432 3556678988864      368999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.79  E-value=3.4e-21  Score=172.66  Aligned_cols=175  Identities=15%  Similarity=0.176  Sum_probs=116.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|+++...
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~~i~~~   69 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPS-GQMVALLGPSGSGKTTLLRIIAGLEH------------QTSGHIRFHGTDVSRL   69 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCCC
Confidence            456788888875  68999999998 99999999999999999999999986            66666  566655332


Q ss_pred             CHHH--HHHHhhccch------hhhheecccc----cCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263          144 SKEE--FLQMVDKNEL------LEYALVYGDY----KGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 ~~~~--~~~~i~~~~~------~~~~~~~~~~----~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iar  198 (286)
                      ....  +....++..+      .++..+....    .+...+    .+.+.+         ......+++|+.||+++||
T Consensus        70 ~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAr  149 (353)
T PRK10851         70 HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALAR  149 (353)
T ss_pred             CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence            2211  0001111112      2222111111    111211    222222         2233456788999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++++      ||+.+.+.+.+.|.+.   .+.+...++|++..+      ...||+|+++++|++
T Consensus       150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea------~~~~Dri~vl~~G~i  215 (353)
T PRK10851        150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA------MEVADRVVVMSQGNI  215 (353)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            99988888887      7777676666665542   234777789998876      478999999998875

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.79  E-value=1.2e-20  Score=158.70  Aligned_cols=173  Identities=20%  Similarity=0.186  Sum_probs=113.2

Q ss_pred             HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++||++.|+.      .++++++.+.+ |++++|+|+||||||||+++|+|+++            |.+|+  ++|.++
T Consensus         3 ~~~~v~~~~~~~~~~~~il~~~sl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~   69 (218)
T cd03266           3 TADALTKRFRDVKKTVQAVDGVSFTVKP-GEVTGLLGPNGAGKTTTLRMLAGLLE------------PDAGFATVDGFDV   69 (218)
T ss_pred             EEEEEEEecCCCCccceeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCCceEEECCEEc
Confidence            45677777752      68888999988 99999999999999999999999986            56665  566554


Q ss_pred             eeeCHHHHHHHh----hccch------hhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          141 FFVSKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       141 ~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      .. ....++..+    ++..+      .++..+....++...    +.+.++         +.+....+++|++|++.+|
T Consensus        70 ~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  148 (218)
T cd03266          70 VK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIA  148 (218)
T ss_pred             cc-CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHH
Confidence            32 122222211    11111      121111111111111    112222         2223345677899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++
T Consensus       149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~------~~~~d~i~~l~~G~i  214 (218)
T cd03266         149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEV------ERLCDRVVVLHRGRV  214 (218)
T ss_pred             HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence            999988888887      7777777777777653  234777789988764      367999999998875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=1.5e-20  Score=166.56  Aligned_cols=176  Identities=16%  Similarity=0.171  Sum_probs=119.0

Q ss_pred             hHHHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263           66 KIELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN  136 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~  136 (286)
                      ..++++|+++.|+.       +|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~L~Gl~~------------p~~G~I~i~   86 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEK-NKIYFIIGNSGSGKSTLVTHFNGLIK------------SKYGTIQVG   86 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEEC
Confidence            34789999999962       69999999998 99999999999999999999999987            66665  56


Q ss_pred             Ccceeee----------------CHHHHHHHh---hcc---ch-----hhhheeccc-ccCccHHH----HHHH------
Q 043263          137 GKDYFFV----------------SKEEFLQMV---DKN---EL-----LEYALVYGD-YKGIPKKQ----IREY------  178 (286)
Q Consensus       137 g~~~~~~----------------~~~~~~~~i---~~~---~~-----~~~~~~~~~-~~~~~~~~----i~~~------  178 (286)
                      |.++...                ....++..+   .+.   .+     .++. .++. ..+...+.    +.+.      
T Consensus        87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL  165 (320)
T PRK13631         87 DIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI-MFGPVALGVKKSEAKKLAKFYLNKMGL  165 (320)
T ss_pred             CEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHH-HhhHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            6544211                112222221   121   11     1211 1111 11122211    1111      


Q ss_pred             ----HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhc
Q 043263          179 ----MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQH  246 (286)
Q Consensus       179 ----~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~  246 (286)
                          .......+++|++|++++||+++.+|+++|+      ||+.+...+.+.|.+.  .+.|...++|+++..      
T Consensus       166 ~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~------  239 (320)
T PRK13631        166 DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV------  239 (320)
T ss_pred             ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------
Confidence                1223345778899999999999988888888      7777777777766542  244777889999874      


Q ss_pred             cCCCcEEEECCCCCH
Q 043263          247 VKNFDYVVVNAEGKL  261 (286)
Q Consensus       247 ~~~~d~viv~~~G~i  261 (286)
                      ...||+|+++++|++
T Consensus       240 ~~~adri~vl~~G~i  254 (320)
T PRK13631        240 LEVADEVIVMDKGKI  254 (320)
T ss_pred             HHhCCEEEEEECCEE
Confidence            368999999998864

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.79  E-value=2.4e-20  Score=157.21  Aligned_cols=174  Identities=17%  Similarity=0.167  Sum_probs=113.9

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+.      .+.++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.+
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~   68 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGK-GEIVAIVGSSGSGKSTLLHLLGGLDN------------PTSGEVLFNGQS   68 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence            346778888852      68899999998 99999999999999999999999986            66666  56665


Q ss_pred             eeeeCHHHH---H-HHh---hcc-chhhhheecccc------cCcc----HHHHHHH---------HhcCCcEEEEeCHH
Q 043263          140 YFFVSKEEF---L-QMV---DKN-ELLEYALVYGDY------KGIP----KKQIREY---------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~---~-~~i---~~~-~~~~~~~~~~~~------~~~~----~~~i~~~---------~~~g~~~v~~~~~q  192 (286)
                      +...+....   + ..+   .+. .+........++      +...    .+.+.+.         +......+++|++|
T Consensus        69 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  148 (221)
T TIGR02211        69 LSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQ  148 (221)
T ss_pred             hhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence            543332221   1 111   111 111111111110      1111    1112222         22233457788999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++.       ...+|+|+++++|++
T Consensus       149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-------~~~~d~v~~l~~G~i  219 (221)
T TIGR02211       149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-------AKKLDRVLEMKDGQL  219 (221)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HhhcCEEEEEeCCEe
Confidence            99999999988888888      7777777777777643   23467778998876       355899999998865

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=2.6e-20  Score=186.43  Aligned_cols=181  Identities=19%  Similarity=0.206  Sum_probs=146.3

Q ss_pred             chhhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263           63 PVNKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN  136 (286)
Q Consensus        63 ~~~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~  136 (286)
                      +..+.|+++|++.+|..    +|+++++.+.+ |+.|||+|..|||||||+..|-++.+            |.+|+  +|
T Consensus      1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p-~eKVGIVGRTGaGKSSL~~aLFRl~e------------~~~G~I~ID 1200 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKP-GEKVGIVGRTGAGKSSLILALFRLVE------------PAEGEILID 1200 (1381)
T ss_pred             CCCCeEEEEEeEEEeCCCCcchhcCceEEEcC-CceEEEeCCCCCCHHHHHHHHHHhcC------------ccCCeEEEc
Confidence            34577999999999975    79999999999 99999999999999999999999987            67777  89


Q ss_pred             CcceeeeCHHHHHHH---hhccchhhhheeccccc---CccHHHHHHHH------------hcCC--------cEEEEeC
Q 043263          137 GKDYFFVSKEEFLQM---VDKNELLEYALVYGDYK---GIPKKQIREYM------------AKGY--------DIVLRVD  190 (286)
Q Consensus       137 g~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~---~~~~~~i~~~~------------~~g~--------~~v~~~~  190 (286)
                      |.|+..+...++|..   |+|+.++..+++.-|+.   ..+++++.+++            +.|.        .-++.||
T Consensus      1201 gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred             CeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence            999999999988875   48887776666655532   23444444442            2222        2233479


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      +|-+.+|||++++..++|+      +|+.+...+++.|++. ...|...|+||+.+       +-.+|+|+|+++|++.|
T Consensus      1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~T-------Vmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNT-------VMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred             HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccch-------hhhcCeEEEeeCCeEee
Confidence            9999999999999999998      8888888888888875 45588899999999       67999999999998754

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.79  E-value=1.5e-20  Score=163.07  Aligned_cols=173  Identities=13%  Similarity=0.161  Sum_probs=117.3

Q ss_pred             HHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      +.++||++.|+  .  .|+++++.+.+ |++++|+|+||||||||+++|+|+++             ..|+  ++|.++.
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~-Ge~~~IvG~nGsGKSTLl~~L~gl~~-------------~~G~I~i~g~~i~   68 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISP-GQRVGLLGRTGSGKSTLLSAFLRLLN-------------TEGDIQIDGVSWN   68 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhhhcC-------------CCcEEEECCEEhh
Confidence            56788899984  2  69999999998 99999999999999999999999974             2344  6676654


Q ss_pred             eeCHHHHHHHh---hccchhhhheeccccc--C-ccHHHHHHHH------------hcCC--------cEEEEeCHHHHH
Q 043263          142 FVSKEEFLQMV---DKNELLEYALVYGDYK--G-IPKKQIREYM------------AKGY--------DIVLRVDIQGAR  195 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~~--~-~~~~~i~~~~------------~~g~--------~~v~~~~~q~v~  195 (286)
                      ..+...++..+   .+...+....+..|+.  + ...+.+.+++            +.+.        ..+.+|++|++.
T Consensus        69 ~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~  148 (275)
T cd03289          69 SVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC  148 (275)
T ss_pred             hCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence            44444444322   2222111111111210  1 1222222221            1221        126678999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++.+|+++|+      ||+.+...+.+.|.+. .+.+...++|+++..       ..||+|+++++|++
T Consensus       149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-------~~~dri~vl~~G~i  214 (275)
T cd03289         149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-------LECQRFLVIEENKV  214 (275)
T ss_pred             HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-------HhCCEEEEecCCeE
Confidence            99999999998888      7887777777777754 234777789999873       46999999998876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.79  E-value=2.6e-20  Score=158.33  Aligned_cols=176  Identities=19%  Similarity=0.251  Sum_probs=115.7

Q ss_pred             HHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++|+++.|+      .+++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.+
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~   68 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPK-GEIFGIIGRSGAGKSTLIRCINGLER------------PTSGSVLVDGTD   68 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEE
Confidence            35677888875      268889999998 99999999999999999999999986            66666  66766


Q ss_pred             eeeeCHHHH---HHHh----hccch------hhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHH
Q 043263          140 YFFVSKEEF---LQMV----DKNEL------LEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~---~~~i----~~~~~------~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~  193 (286)
                      +...+....   +..+    ++..+      .++..+....++..    .+.+.+.+         ......+++|++|+
T Consensus        69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  148 (233)
T cd03258          69 LTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR  148 (233)
T ss_pred             cccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHH
Confidence            543332221   1111    11111      22211100011111    11222222         22334567789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|++.
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~------~~~~d~i~~l~~G~i~  220 (233)
T cd03258         149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV------KRICDRVAVMEKGEVV  220 (233)
T ss_pred             HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence            9999999988888888      7777777777777653   234677779988874      3679999999988763

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.79  E-value=2.4e-20  Score=157.40  Aligned_cols=175  Identities=17%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++||++.|+.  .+.++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~   68 (222)
T cd03224           2 EVENLNAGYGKSQILFGVSLTVPE-GEIVALLGRNGAGKTTLLKTIMGLLP------------PRSGSIRFDGRDITGLP   68 (222)
T ss_pred             EEeeEEeecCCeeEeeeeeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEcCCCC
Confidence            46778888865  78999999998 99999999999999999999999986            55555  5555443222


Q ss_pred             HHHH-HHHh----hcc------chhhhheecccccC--ccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          145 KEEF-LQMV----DKN------ELLEYALVYGDYKG--IPKKQIREY----------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       145 ~~~~-~~~i----~~~------~~~~~~~~~~~~~~--~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      .... +..+    +..      ...++..+....+.  ...+.+.+.          +......+++|++|++.+|++++
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~  148 (222)
T cd03224          69 PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             HHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence            2221 1111    111      11122111111111  001111111          12223456788999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      .+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++.
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i~  211 (222)
T cd03224         149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFA------LEIADRAYVLERGRVV  211 (222)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhccEEEEeeCCeEE
Confidence            88888888      7777777777777653  234667778988864      3679999999998764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.79  E-value=2.5e-20  Score=156.41  Aligned_cols=173  Identities=16%  Similarity=0.187  Sum_probs=111.3

Q ss_pred             HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      .++|+++.|+.   .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 ~~~~l~~~~~~~~~~l~~~sl~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~~   68 (214)
T cd03292           2 EFINVTKTYPNGTAALDGINISISA-GEFVFLVGPSGAGKSTLLKLIYKEEL------------PTSGTIRVNGQDVSDL   68 (214)
T ss_pred             EEEEEEEEeCCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEEcccC
Confidence            35677777742   68899999998 99999999999999999999999986            55665  566554333


Q ss_pred             CHHH---HHHHh---hcc-------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263          144 SKEE---FLQMV---DKN-------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       144 ~~~~---~~~~i---~~~-------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ia  197 (286)
                      +...   ++..+   .+.       ...++..+....++...    +.+.+.+         ......+++|++|++.+|
T Consensus        69 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  148 (214)
T cd03292          69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA  148 (214)
T ss_pred             CHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence            2211   11111   111       11222111100111111    1222222         223345677899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|+
T Consensus       149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~G~  213 (214)
T cd03292         149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELV------DTTRHRVIALERGK  213 (214)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEeCCc
Confidence            999988888777      7777677777766653  234667778988774      35799999998875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.79  E-value=1.6e-20  Score=158.23  Aligned_cols=174  Identities=20%  Similarity=0.220  Sum_probs=112.5

Q ss_pred             HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++||++.|+.    +++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         2 ~~~~l~~~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~   68 (220)
T cd03263           2 QIRNLTKTYKKGTKPAVDDLSLNVYK-GEIFGLLGHNGAGKTTTLKMLTGELR------------PTSGTAYINGYSIRT   68 (220)
T ss_pred             EEEeeEEEeCCCCceeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEeccc
Confidence            45677777753    68899999998 99999999999999999999999986            55665  55655432


Q ss_pred             eCHHHHHHHh----hccc------hhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHH
Q 043263          143 VSKEEFLQMV----DKNE------LLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       143 ~~~~~~~~~i----~~~~------~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iara  199 (286)
                      . ...+...+    ++..      ..++..+....++...    +.+.+.         .......+++|++|++.+|++
T Consensus        69 ~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  147 (220)
T cd03263          69 D-RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA  147 (220)
T ss_pred             c-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence            1 11111111    1111      1111111111111111    112222         122234566789999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++.+|+++|+      ||+.+.+.+.+.|.+.. +.+...++|+++..      ...||+++++++|++.
T Consensus       148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~g~i~  211 (220)
T cd03263         148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEA------EALCDRIAIMSDGKLR  211 (220)
T ss_pred             HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhcCEEEEEECCEEE
Confidence            9988888888      77777777777776532 23666778988874      3679999999988763

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.78  E-value=2.7e-20  Score=158.53  Aligned_cols=175  Identities=18%  Similarity=0.205  Sum_probs=113.2

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .+.++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~   68 (236)
T cd03219           2 EVRGLTKRFGGLVALDDVSFSVRP-GEIHGLIGPNGAGKTTLFNLISGFLR------------PTSGSVLFDGEDITGLP   68 (236)
T ss_pred             eeeeeEEEECCEEEecCceEEecC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCceEEECCEECCCCC
Confidence            45788888865  68999999998 99999999999999999999999986            55565  5555443322


Q ss_pred             HHHHH-HH---h-hcc------chhhhheecccccC--------------ccHHHHHHHH---------hcCCcEEEEeC
Q 043263          145 KEEFL-QM---V-DKN------ELLEYALVYGDYKG--------------IPKKQIREYM---------AKGYDIVLRVD  190 (286)
Q Consensus       145 ~~~~~-~~---i-~~~------~~~~~~~~~~~~~~--------------~~~~~i~~~~---------~~g~~~v~~~~  190 (286)
                      ..... ..   + ++.      ...++..+......              ...+.+.+++         ......+++|+
T Consensus        69 ~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  148 (236)
T cd03219          69 PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQ  148 (236)
T ss_pred             HHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHH
Confidence            22211 10   1 111      11121111100000              0011222222         22223466789


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +|++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++.
T Consensus       149 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~G~i~  222 (236)
T cd03219         149 QRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV------MSLADRVTVLDQGRVI  222 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEeCCEEE
Confidence            9999999999988888887      7777677777766643  234677779988875      3679999999988763

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=1e-19  Score=142.09  Aligned_cols=177  Identities=16%  Similarity=0.169  Sum_probs=123.5

Q ss_pred             HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .|+++++++..+.      +|+++++.+.+ |+.++|+||||||||||+-.|+|+..            |.+|+  +.|+
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~-Ge~vaiVG~SGSGKSTLl~vlAGLd~------------~ssGeV~l~G~   72 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKR-GETVAIVGPSGSGKSTLLAVLAGLDD------------PSSGEVRLLGQ   72 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecC-CceEEEEcCCCCcHHhHHHHHhcCCC------------CCCceEEEcCc
Confidence            5788999999875      69999999998 99999999999999999999999976            77887  7899


Q ss_pred             ceeeeCHHHHHHHh--------hccchhhhheeccc------ccCc----cHHHHHHH---------HhcCCcEEEEeCH
Q 043263          139 DYFFVSKEEFLQMV--------DKNELLEYALVYGD------YKGI----PKKQIREY---------MAKGYDIVLRVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~~~~i--------~~~~~~~~~~~~~~------~~~~----~~~~i~~~---------~~~g~~~v~~~~~  191 (286)
                      +...++.+......        +.-.++.+.....|      +.+.    ......+.         +......+++|+.
T Consensus        73 ~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQ  152 (228)
T COG4181          73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQ  152 (228)
T ss_pred             chhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHH
Confidence            98888776544432        11112222222222      2221    11111222         2222346778999


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ||+++||++...|++++-      ||..+-..+..-+....   +.|...++|+..-+       ..|++++-+.+|+++
T Consensus       153 QRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-------~Rc~R~~r~~~G~l~  225 (228)
T COG4181         153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-------ARCDRQLRLRSGRLV  225 (228)
T ss_pred             HHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-------Hhhhheeeeecceec
Confidence            999999999966666655      66666666666655422   33667778987763       789999999999875


Q ss_pred             H
Q 043263          263 S  263 (286)
Q Consensus       263 ~  263 (286)
                      +
T Consensus       226 ~  226 (228)
T COG4181         226 E  226 (228)
T ss_pred             c
Confidence            3

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.78  E-value=2.2e-20  Score=156.64  Aligned_cols=174  Identities=18%  Similarity=0.234  Sum_probs=110.3

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee-----
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF-----  141 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~-----  141 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++....+.+.          ++|.++.     
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~----------~~g~~~~~~~~~   70 (213)
T cd03301           2 ELENVTKRFGNVTALDDLNLDIAD-GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY----------IGGRDVTDLPPK   70 (213)
T ss_pred             EEEeeEEEECCeeeeeceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECCcCCcc
Confidence            45678888865  68999999998 999999999999999999999999863333333          3343321     


Q ss_pred             -----eeCHHHHHHHhhccchhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          142 -----FVSKEEFLQMVDKNELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       142 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                           ++.+..  .........++.......++...    +.+.++         +......+++|+.|++.+|++++.+
T Consensus        71 ~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~  148 (213)
T cd03301          71 DRDIAMVFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE  148 (213)
T ss_pred             cceEEEEecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence                 111110  01111122222211101111111    112222         2233345778999999999999988


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++|++
T Consensus       149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~g~~  209 (213)
T cd03301         149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA------MTMADRIAVMNDGQI  209 (213)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCeEEEEECCEE
Confidence            888777      7777677776666543   234677778988764      367999999988865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.78  E-value=9.5e-21  Score=153.73  Aligned_cols=157  Identities=25%  Similarity=0.278  Sum_probs=106.9

Q ss_pred             hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+ 
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~~~~~-   68 (173)
T cd03230           3 VRNLSKRYGKKTALDDISLTVEK-GEIYGLLGPNGAGKTTLIKIILGLLK------------PDSGEIKVLGKDIKKEP-   68 (173)
T ss_pred             EEEEEEEECCeeeeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEcccch-
Confidence            4567777764  68899999998 99999999999999999999999986            66666  5666543221 


Q ss_pred             HHHHHHhhccchhh-hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHH
Q 043263          146 EEFLQMVDKNELLE-YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMAL  218 (286)
Q Consensus       146 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l  218 (286)
                      ..++..+   .++. +...+   .+.+   +.+.+.     +.+|++|++.+|++++.+|+++++      ||+.+...+
T Consensus        69 ~~~~~~i---~~~~q~~~~~---~~~t---v~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l  134 (173)
T cd03230          69 EEVKRRI---GYLPEEPSLY---ENLT---VRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF  134 (173)
T ss_pred             HhhhccE---EEEecCCccc---cCCc---HHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence            1111111   1111 00011   1111   111121     788999999999999988888888      777777777


Q ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          219 VERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       219 ~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .+.|.+..  +.+...++|+....      ...||+++++++|+
T Consensus       135 ~~~l~~~~~~g~tiii~th~~~~~------~~~~d~i~~l~~g~  172 (173)
T cd03230         135 WELLRELKKEGKTILLSSHILEEA------ERLCDRVAILNNGR  172 (173)
T ss_pred             HHHHHHHHHCCCEEEEECCCHHHH------HHhCCEEEEEeCCC
Confidence            77766532  33566778887764      35799999998875

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.5e-20  Score=162.42  Aligned_cols=174  Identities=14%  Similarity=0.120  Sum_probs=117.4

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ++++||++.|+.    +++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++.
T Consensus         6 l~~~~l~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGaGKSTLl~~i~G~~~------------p~~G~i~~~g~~i~   72 (279)
T PRK13635          6 IRVEHISFRYPDAATYALKDVSFSVYE-GEWVAIVGHNGSGKSTLAKLLNGLLL------------PEAGTITVGGMVLS   72 (279)
T ss_pred             EEEEEEEEEeCCCCccceeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEECC
Confidence            678899999863    78999999998 99999999999999999999999986            66666  6676654


Q ss_pred             eeCHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          142 FVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      ..+.......+   .+.        ...++..+.....+...    +.+.++         +......+++|++|++.+|
T Consensus        73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  152 (279)
T PRK13635         73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIA  152 (279)
T ss_pred             cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence            33332222211   111        12222211111111121    112222         2333345677899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+..   +.+...++|+++..       ..||+|+++++|++
T Consensus       153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~-------~~~d~i~~l~~G~i  218 (279)
T PRK13635        153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA-------AQADRVIVMNKGEI  218 (279)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-------HcCCEEEEEECCEE
Confidence            999988888888      77777777777666432   34677778988874       35999999988864

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.78  E-value=5e-20  Score=162.36  Aligned_cols=162  Identities=17%  Similarity=0.174  Sum_probs=107.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh----h
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV----D  153 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i----~  153 (286)
                      +++++++.+.+ |++++|+||||||||||+++|+|++.            |.+|+  ++|.++.. ....++..+    +
T Consensus         8 ~l~~vs~~i~~-Ge~~~l~G~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q   73 (302)
T TIGR01188         8 AVDGVNFKVRE-GEVFGFLGPNGAGKTTTIRMLTTLLR------------PTSGTARVAGYDVVR-EPRKVRRSIGIVPQ   73 (302)
T ss_pred             EEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc-CHHHHHhhcEEecC
Confidence            67888888887 99999999999999999999999986            66676  66765532 222222211    1


Q ss_pred             ccch------hhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-----
Q 043263          154 KNEL------LEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVFVF-----  209 (286)
Q Consensus       154 ~~~~------~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~Il-----  209 (286)
                      ...+      .++..+....++....    .+.+.+         ......+++|++|++.+|++++.+|+++|+     
T Consensus        74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  153 (302)
T TIGR01188        74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT  153 (302)
T ss_pred             CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            1111      2222222222232211    122222         222345678899999999999988888888     


Q ss_pred             -EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 -LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 -ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                       ||+.+...+++.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~------~~~~d~v~~l~~G~i  202 (302)
T TIGR01188       154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEA------DKLCDRIAIIDHGRI  202 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence             7777777777766653  234667779988875      367999999988865

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.5e-20  Score=162.81  Aligned_cols=176  Identities=17%  Similarity=0.199  Sum_probs=117.4

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++||++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..
T Consensus        11 ~l~i~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~   77 (265)
T PRK10575         11 TFALRNVSFRVPGRTLLHPLSLTFPA-GKVTGLIGHNGSGKSTLLKMLGRHQP------------PSEGEILLDAQPLES   77 (265)
T ss_pred             eEEEeeEEEEECCEEEEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCCCEEEECCEehhh
Confidence            4788999999975  79999999998 99999999999999999999999986            56665  56655433


Q ss_pred             eCHHHHHHHh---hcc-c------hhhhheeccc-cc-------CccHHHHHHH---------HhcCCcEEEEeCHHHHH
Q 043263          143 VSKEEFLQMV---DKN-E------LLEYALVYGD-YK-------GIPKKQIREY---------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~~~~~~i---~~~-~------~~~~~~~~~~-~~-------~~~~~~i~~~---------~~~g~~~v~~~~~q~v~  195 (286)
                      .....++..+   .+. .      ..++..+... ..       ....+.+.+.         +......+++|+.|++.
T Consensus        78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  157 (265)
T PRK10575         78 WSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW  157 (265)
T ss_pred             CCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHH
Confidence            2332222211   111 1      1111111000 00       0011122222         22223456789999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i------~~~~d~i~~l~~G~i  226 (265)
T PRK10575        158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA------ARYCDYLVALRGGEM  226 (265)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCeE
Confidence            99999988888888      7777777776666543   234667778988874      367999999988875

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.4e-19  Score=145.99  Aligned_cols=175  Identities=19%  Similarity=0.254  Sum_probs=117.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+.+|++++..+  .+++++++..+ |++++|+|||||||||+++.|+|.+.            |..|+  ++|.+....
T Consensus         2 i~a~nls~~~~Gr~ll~~vsl~~~p-Gev~ailGPNGAGKSTlLk~LsGel~------------p~~G~v~~~g~~l~~~   68 (259)
T COG4559           2 IRAENLSYSLAGRRLLDGVSLDLRP-GEVLAILGPNGAGKSTLLKALSGELS------------PDSGEVTLNGVPLNSW   68 (259)
T ss_pred             eeeeeeEEEeecceeccCcceeccC-CcEEEEECCCCccHHHHHHHhhCccC------------CCCCeEeeCCcChhhC
Confidence            445677777765  78999999998 99999999999999999999999886            77887  788888777


Q ss_pred             CHHHHHHH---hhccch------hhhheecccc-c--Ccc--HHH--HHHH---------HhcCCcEEEEeCHHHHHHHH
Q 043263          144 SKEEFLQM---VDKNEL------LEYALVYGDY-K--GIP--KKQ--IREY---------MAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 ~~~~~~~~---i~~~~~------~~~~~~~~~~-~--~~~--~~~--i~~~---------~~~g~~~v~~~~~q~v~iar  198 (286)
                      ...++...   ++|..-      +.+..-++.. +  +-.  .+.  ..++         ....+..+++|+.||+.+||
T Consensus        69 ~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlAR  148 (259)
T COG4559          69 PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLAR  148 (259)
T ss_pred             CHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHH
Confidence            77665443   233321      1111122221 1  111  111  2222         23456788899999999999


Q ss_pred             HHhCC-Cc----EEEEEecCCHH-------HHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGD-SA----VFVFLAAESEM-------ALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~-~~----~~Illd~~~~~-------~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+..- ++    .++|||+|+-.       ...+-.++  +.+.....|.|+++-+      ..+||+|+++.+|++
T Consensus       149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA------A~YaDrivll~~Grv  219 (259)
T COG4559         149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA------AQYADRIVLLHQGRV  219 (259)
T ss_pred             HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH------HHhhheeeeeeCCeE
Confidence            88632 22    37888888643       22222222  2233666778998876      589999999998875

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.78  E-value=1.4e-20  Score=153.93  Aligned_cols=163  Identities=16%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++++|+++.|  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+.
T Consensus         5 l~~~~l~~~~--~l~~vs~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~   69 (182)
T cd03215           5 LEVRGLSVKG--AVRDVSFEVRA-GEIVGIAGLVGNGQTELAEALFGLRP------------PASGEITLDGKPVTRRSP   69 (182)
T ss_pred             EEEeccEEEe--eecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCccCH
Confidence            5677888888  78999999998 99999999999999999999999986            67776  67766543332


Q ss_pred             H-HHHHHhhccchhhhh----eecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCC
Q 043263          146 E-EFLQMVDKNELLEYA----LVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAES  214 (286)
Q Consensus       146 ~-~~~~~i~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~  214 (286)
                      . ..+..+   .+....    .++..  ....+.+.-...     +.+|++|++.+|++++.+|+++++      ||+.+
T Consensus        70 ~~~~~~~i---~~~~q~~~~~~~~~~--~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~  139 (182)
T cd03215          70 RDAIRAGI---AYVPEDRKREGLVLD--LSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA  139 (182)
T ss_pred             HHHHhCCe---EEecCCcccCcccCC--CcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH
Confidence            2 111111   111100    00100  011111111111     788999999999999988888888      88877


Q ss_pred             HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          215 EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       215 ~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ...+.+.+.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       140 ~~~l~~~l~~~~~~~~tiii~sh~~~~~------~~~~d~v~~l~~G~i  182 (182)
T cd03215         140 KAEIYRLIRELADAGKAVLLISSELDEL------LGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEecCCcC
Confidence            77777777653  234667778988764      367999999988853

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.78  E-value=9.1e-21  Score=171.06  Aligned_cols=174  Identities=18%  Similarity=0.213  Sum_probs=114.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++.            |+.|+  ++|.++...
T Consensus         4 l~i~~l~~~~~~~~vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLL~~iaGl~~------------p~~G~I~~~g~~i~~~   70 (369)
T PRK11000          4 VTLRNVTKAYGDVVISKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLED------------ITSGDLFIGEKRMNDV   70 (369)
T ss_pred             EEEEEEEEEeCCeEEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECCCC
Confidence            567888999875  68999999998 99999999999999999999999986            55555  455544322


Q ss_pred             CHHHHHH--Hh-hcc------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          144 SKEEFLQ--MV-DKN------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       144 ~~~~~~~--~i-~~~------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                      +... +.  ++ ++.      ...++..+....++...    +.+.++         +......+++|++||+++||+++
T Consensus        71 ~~~~-~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~  149 (369)
T PRK11000         71 PPAE-RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV  149 (369)
T ss_pred             CHhH-CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence            2211 00  01 111      11222111101111121    122222         22233457789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++|+      ||+.+.+.+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~------~~~~d~i~vl~~G~i  212 (369)
T PRK11000        150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA------MTLADKIVVLDAGRV  212 (369)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            88888887      7777666666655542   244777889988875      478999999998865

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.78  E-value=6.9e-20  Score=158.92  Aligned_cols=174  Identities=18%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~L~Gl~~------------p~~G~i~i~g~~~~~~~   92 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVRE-GEIFVIMGLSGSGKSTLLRCINRLIE------------PTSGKVLIDGQDIAAMS   92 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEccccC
Confidence            67799999987  69999999998 99999999999999999999999986            55555  5565443222


Q ss_pred             HHHHH----HH---h-hcc------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          145 KEEFL----QM---V-DKN------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       145 ~~~~~----~~---i-~~~------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      ...+.    ..   + +..      ...++..+.....+...    +.+.+.         +......+++|++|++.+|
T Consensus        93 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA  172 (269)
T cd03294          93 RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA  172 (269)
T ss_pred             hhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH
Confidence            22111    00   0 111      11111111000111111    112222         2333345778999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~------~~~~d~v~~l~~G~i  239 (269)
T cd03294         173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA------LRLGDRIAIMKDGRL  239 (269)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence            999988888888      7777677777766543   234667778988764      367999999988875

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.78  E-value=1.4e-20  Score=153.70  Aligned_cols=162  Identities=20%  Similarity=0.305  Sum_probs=112.3

Q ss_pred             hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++|+++.|+.  .|.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+.
T Consensus         2 ~~~l~~~~~~~~~l~~~~~~i~~-G~~~~l~G~nGsGKStLl~~i~G~~~------------~~~G~v~~~g~~~~~~~~   68 (180)
T cd03214           2 VENLSVGYGGRTVLDDLSLSIEA-GEIVGILGPNGAGKSTLLKTLAGLLK------------PSSGEILLDGKDLASLSP   68 (180)
T ss_pred             eeEEEEEECCeeeEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCcCCH
Confidence            4567777764  68889999987 99999999999999999999999986            66776  66766543333


Q ss_pred             HHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHH
Q 043263          146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALV  219 (286)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~  219 (286)
                      ..+...+   .++..   .-...++     ...+......+.+|+.|+++++|+++.+|+++|+      ||+.+...+.
T Consensus        69 ~~~~~~i---~~~~q---~l~~~gl-----~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~  137 (180)
T cd03214          69 KELARKI---AYVPQ---ALELLGL-----AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL  137 (180)
T ss_pred             HHHHHHH---hHHHH---HHHHcCC-----HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence            3322211   11111   0011111     1122334456888999999999999988888887      6666666776


Q ss_pred             HHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          220 ERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       220 ~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+.+..   +.+...++|+++..      ...||+++++++|++
T Consensus       138 ~~l~~~~~~~~~tiii~sh~~~~~------~~~~d~~~~l~~g~i  176 (180)
T cd03214         138 ELLRRLARERGKTVVMVLHDLNLA------ARYADRVILLKDGRI  176 (180)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            6665431   33667778888864      368999999998875

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.78  E-value=2.6e-20  Score=159.17  Aligned_cols=174  Identities=17%  Similarity=0.195  Sum_probs=112.7

Q ss_pred             HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +++||++.|+.   .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 ~~~~l~~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   68 (242)
T cd03295           2 EFENVTKRYGGGKKAVNNLNLEIAK-GEFLVLIGPSGSGKTTTMKMINRLIE------------PTSGEIFIDGEDIREQ   68 (242)
T ss_pred             EEEEEEEEeCCcceEeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCeEcCcC
Confidence            35677777753   68889999998 99999999999999999999999986            55555  556544332


Q ss_pred             CHHHHHHHh---hcc-------chhhhheecccccCcc----HHHHHHHH-----------hcCCcEEEEeCHHHHHHHH
Q 043263          144 SKEEFLQMV---DKN-------ELLEYALVYGDYKGIP----KKQIREYM-----------AKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 ~~~~~~~~i---~~~-------~~~~~~~~~~~~~~~~----~~~i~~~~-----------~~g~~~v~~~~~q~v~iar  198 (286)
                      +...++..+   .+.       ...++..+.....+..    .+.+.+.+           ......+++|++|++.+|+
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~lar  148 (242)
T cd03295          69 DPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVAR  148 (242)
T ss_pred             ChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence            222222111   111       1122221111111111    11122222           1222346678999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++|++
T Consensus       149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~------~~~~d~i~~l~~G~i  214 (242)
T cd03295         149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA------FRLADRIAIMKNGEI  214 (242)
T ss_pred             HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99988888888      7777777777766653   234667779988764      368999999998876

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.5e-20  Score=163.19  Aligned_cols=175  Identities=14%  Similarity=0.100  Sum_probs=114.1

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ++++||++.|+.       +++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~-Ge~v~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~   68 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKK-GSYTALIGHTGSGKSTLLQHLNGLLQ------------PTEGKVTVGDI   68 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            456778888852       68899999998 99999999999999999999999986            66665  5666


Q ss_pred             ceeee----CHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHH----------hcCCcEEEEe
Q 043263          139 DYFFV----SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYM----------AKGYDIVLRV  189 (286)
Q Consensus       139 ~~~~~----~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~----------~~g~~~v~~~  189 (286)
                      ++...    ....++..+   .+.        ...++..+....++...+    .+.+++          ......+++|
T Consensus        69 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG  148 (288)
T PRK13643         69 VVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG  148 (288)
T ss_pred             ECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHH
Confidence            54211    112222211   111        111221111111122221    122222          2222446678


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++++|++++.+|+++|+      ||+.+...+.+.|.+.  .+.|...++|+++..      ...||+|+++++|++
T Consensus       149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~------~~~~dri~~l~~G~i  222 (288)
T PRK13643        149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDV------ADYADYVYLLEKGHI  222 (288)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99999999999988888888      7777677776666542  244777889988874      367999999998865

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.78  E-value=4.5e-20  Score=156.03  Aligned_cols=181  Identities=15%  Similarity=0.142  Sum_probs=116.5

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         7 ~i~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~   73 (225)
T PRK10247          7 LLQLQNVGYLAGDAKILNNISFSLRA-GEFKLITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDIST   73 (225)
T ss_pred             eEEEeccEEeeCCceeeeccEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCeEEECCEEcCc
Confidence            3678899999975  79999999998 99999999999999999999999876            55665  55554432


Q ss_pred             eCHHHHHHHh---hcc------chhhhheecccccCc--cHHHHHHHH----------hcCCcEEEEeCHHHHHHHHHHh
Q 043263          143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGI--PKKQIREYM----------AKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~--~~~~i~~~~----------~~g~~~v~~~~~q~v~iaral~  201 (286)
                      .+...++..+   .+.      ...++..+....+..  ..+.+.+.+          ......+++|+.|++.++++++
T Consensus        74 ~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~  153 (225)
T PRK10247         74 LKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ  153 (225)
T ss_pred             CCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            2222222211   111      112221110001111  111222222          2223446678899999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC--CCCHHHHHHH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA--EGKLDSAVKL  267 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~--~G~i~~~~~~  267 (286)
                      .+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+.+..       ..||++++++  .|.+++..-+
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~-------~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI-------NHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH-------HhCCEEEEEecccchHhhhhhc
Confidence            88888888      7777677776666543   234667778887763       4699998884  5677665443

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.1e-20  Score=163.50  Aligned_cols=175  Identities=13%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ++++||++.|+.       +|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~   69 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIED-GEFVGLIGHTGSGKSTLIQHLNGLLK------------PTSGKIIIDGV   69 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCccEEEECCE
Confidence            456777887752       68899999998 99999999999999999999999986            56665  5665


Q ss_pred             ceeeeC--HHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHHhc-----------CCcEEEEeC
Q 043263          139 DYFFVS--KEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYMAK-----------GYDIVLRVD  190 (286)
Q Consensus       139 ~~~~~~--~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~~~-----------g~~~v~~~~  190 (286)
                      ++...+  ...++..+   .+.        ...++..+....++...+    .+.++++.           ....+++|+
T Consensus        70 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq  149 (287)
T PRK13637         70 DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQ  149 (287)
T ss_pred             ECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHH
Confidence            543211  11222111   111        112221111111122222    22222221           223456789


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++|++
T Consensus       150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~drv~~l~~G~i  223 (287)
T PRK13637        150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDV------AKLADRIIVMNKGKC  223 (287)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999999988888888      7777777776666542   244777889998874      367999999988864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.78  E-value=3.9e-20  Score=156.74  Aligned_cols=175  Identities=17%  Similarity=0.154  Sum_probs=114.4

Q ss_pred             HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .++++|+++.|+.      .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~   72 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKR-GETIALIGESGSGKSTLLAILAGLDD------------GSSGEVSLVGQ   72 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCeeEEECCE
Confidence            4678888888863      68999999998 99999999999999999999999986            56665  5665


Q ss_pred             ceeeeCHHHH---H-HHh---hcc-c------hhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCH
Q 043263          139 DYFFVSKEEF---L-QMV---DKN-E------LLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~---~-~~i---~~~-~------~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~  191 (286)
                      ++...+....   + ..+   .+. .      ..++..+....++..    .+.+.+.         +......+++|++
T Consensus        73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~  152 (228)
T PRK10584         73 PLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ  152 (228)
T ss_pred             EcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHH
Confidence            5443333221   1 111   111 1      111111100011111    1122222         2233345778899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+.+.+.+.|.+.   .+.+...++|+++.       ...||+++++++|++
T Consensus       153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-------~~~~d~i~~l~~g~i  224 (228)
T PRK10584        153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-------AARCDRRLRLVNGQL  224 (228)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-------HHhCCEEEEEECCEE
Confidence            999999999988887777      7776677777777543   23466777898776       345999999998876

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.78  E-value=9.4e-21  Score=152.20  Aligned_cols=147  Identities=20%  Similarity=0.252  Sum_probs=106.5

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~vl~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~v~~~g~~~~~~~   68 (163)
T cd03216           2 ELRGITKRFGGVKALDGVSLSVRR-GEVHALLGENGAGKSTLMKILSGLYK------------PDSGEILVDGKEVSFAS   68 (163)
T ss_pred             EEEEEEEEECCeEEEeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEECCcCC
Confidence            45677888865  78899999998 99999999999999999999999986            66666  5665543222


Q ss_pred             HHH-HHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263          145 KEE-FLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA  217 (286)
Q Consensus       145 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~  217 (286)
                      ... .+..+   .+.     +                    .+.+|++|++.+|++++.+|+++++      ||+.+...
T Consensus        69 ~~~~~~~~i---~~~-----~--------------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~  120 (163)
T cd03216          69 PRDARRAGI---AMV-----Y--------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVER  120 (163)
T ss_pred             HHHHHhcCe---EEE-----E--------------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence            111 00000   000     0                    0778999999999999988888888      77776777


Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          218 LVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       218 l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +.+.+.+..  +.+...++|++...      ...||+++++++|++.
T Consensus       121 l~~~l~~~~~~~~tiii~sh~~~~~------~~~~d~~~~l~~g~i~  161 (163)
T cd03216         121 LFKVIRRLRAQGVAVIFISHRLDEV------FEIADRVTVLRDGRVV  161 (163)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence            777666532  33666778888764      3679999999988753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=9.3e-21  Score=171.01  Aligned_cols=176  Identities=18%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+..            |..|+  ++|+++..
T Consensus        19 ~l~l~~v~~~~~~~~~l~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~~i~~   85 (377)
T PRK11607         19 LLEIRNLTKSFDGQHAVDDVSLTIYK-GEIFALLGASGCGKSTLLRMLAGFEQ------------PTAGQIMLDGVDLSH   85 (377)
T ss_pred             eEEEEeEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECCC
Confidence            4788999999976  68899999998 99999999999999999999999986            56665  56665433


Q ss_pred             eCHHH--HHHHhhccchhhhheecccc------cCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263          143 VSKEE--FLQMVDKNELLEYALVYGDY------KGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 ~~~~~--~~~~i~~~~~~~~~~~~~~~------~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~  201 (286)
                      .....  +....++..++.+..+..|+      .+....    .+.+.+         ......+++|+.||+++||+++
T Consensus        86 ~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~  165 (377)
T PRK11607         86 VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA  165 (377)
T ss_pred             CCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence            22211  00011222222222222221      112221    222222         2223456788999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|.++++      ||+...+.+.+.|.   ++.+.+...++|+.+.+      ...||+|+++++|++
T Consensus       166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea------~~laDri~vl~~G~i  228 (377)
T PRK11607        166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA------MTMAGRIAIMNRGKF  228 (377)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEeCCEE
Confidence            88888777      67666666654433   33344777789988875      478999999998865

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.77  E-value=6.6e-20  Score=168.29  Aligned_cols=179  Identities=17%  Similarity=0.183  Sum_probs=119.9

Q ss_pred             hHHHhHhHHHHhcc-------------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC
Q 043263           66 KIELLRSLEASLGH-------------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP  132 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-------------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~  132 (286)
                      ..++++||++.|..             +++++++.+.+ |+++||+|+|||||||++++|+|+.+            |..
T Consensus       279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~-GE~lglVGeSGsGKSTlar~i~gL~~------------P~~  345 (539)
T COG1123         279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE-GETLGLVGESGSGKSTLARILAGLLP------------PSS  345 (539)
T ss_pred             ceeEeeeeeeeeccccccccccccceeeeeeeeeEecC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCC
Confidence            34678888888861             47888999998 99999999999999999999999987            656


Q ss_pred             CC--cCCcceeeeCHHHHHH------Hhhccch--------hhh-----heecccccCcc-HHHHHH----------HHh
Q 043263          133 GE--VNGKDYFFVSKEEFLQ------MVDKNEL--------LEY-----ALVYGDYKGIP-KKQIRE----------YMA  180 (286)
Q Consensus       133 G~--~~g~~~~~~~~~~~~~------~i~~~~~--------~~~-----~~~~~~~~~~~-~~~i~~----------~~~  180 (286)
                      |.  ++|.+ ...+...+..      ++.|+.+        +.+     ...+....... .+.+.+          .+.
T Consensus       346 G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~  424 (539)
T COG1123         346 GSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLD  424 (539)
T ss_pred             ceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHh
Confidence            65  55655 2222222221      1122221        000     00010000000 111211          244


Q ss_pred             cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          181 KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVER---LVERKTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       181 ~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~r---l~~r~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      +...-+++||+||+++||++..+|.++|+      ||+.....+.+-   |+++-+.+...|+|+++..      ...||
T Consensus       425 ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV------~~i~d  498 (539)
T COG1123         425 RYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV------RYIAD  498 (539)
T ss_pred             cCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH------HhhCc
Confidence            55577889999999999999989988888      777655555544   4445556888899999986      47899


Q ss_pred             EEEECCCCCHHHH
Q 043263          252 YVVVNAEGKLDSA  264 (286)
Q Consensus       252 ~viv~~~G~i~~~  264 (286)
                      +|.++.+|++.|.
T Consensus       499 rv~vm~~G~iVE~  511 (539)
T COG1123         499 RVAVMYDGRIVEE  511 (539)
T ss_pred             eEEEEECCeEEEe
Confidence            9999999987554

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=2.4e-20  Score=163.38  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=113.8

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ++++||++.|+.       +|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|+
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~   69 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPS-GSYVAIIGHTGSGKSTLLQHLNGLLQ------------PTSGTVTIGER   69 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            456788888852       78999999998 99999999999999999999999986            55665  5666


Q ss_pred             ceee----eCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH----------HhcCCcEEEEe
Q 043263          139 DYFF----VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY----------MAKGYDIVLRV  189 (286)
Q Consensus       139 ~~~~----~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~----------~~~g~~~v~~~  189 (286)
                      ++..    .....++..+   .+.        ...++..+.....+...+    .+.++          .......+++|
T Consensus        70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  149 (290)
T PRK13634         70 VITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGG  149 (290)
T ss_pred             ECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHH
Confidence            5421    1111222211   111        111111111001122221    12222          12233456678


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|+
T Consensus       150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~------~~~~drv~~l~~G~  223 (290)
T PRK13634        150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA------ARYADQIVVMHKGT  223 (290)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCE
Confidence            99999999999988888888      7777677776666543   244778889988875      36799999998886


Q ss_pred             H
Q 043263          261 L  261 (286)
Q Consensus       261 i  261 (286)
                      +
T Consensus       224 i  224 (290)
T PRK13634        224 V  224 (290)
T ss_pred             E
Confidence            4

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.77  E-value=3.6e-20  Score=156.12  Aligned_cols=174  Identities=20%  Similarity=0.235  Sum_probs=109.7

Q ss_pred             HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce--
Q 043263           69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY--  140 (286)
Q Consensus        69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~--  140 (286)
                      +++|+++.|+.      +++++++.+.+ |++++|+||||||||||+++|+|++....+.+.          ++|.++  
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----------~~g~~~~~   70 (220)
T cd03293           2 EVRNVSKTYGGGGGAVTALEDISLSVEE-GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL----------VDGEPVTG   70 (220)
T ss_pred             eEEEEEEEcCCCCcceEEEeceeEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECcc
Confidence            35677777753      68888999998 999999999999999999999999863333332          344332  


Q ss_pred             -----eeeCHHHHHHHhhccchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263          141 -----FFVSKEEFLQMVDKNELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       141 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~  202 (286)
                           .++.+..  ..+......++..+....++..    .+.+.+.         +......+++|++|++.+|++++.
T Consensus        71 ~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~  148 (220)
T cd03293          71 PGPDRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV  148 (220)
T ss_pred             ccCcEEEEeccc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence                 1111110  0111111122211110011111    1112222         223335577899999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC--CCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA--EGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~--~G~i  261 (286)
                      +|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||++++++  +|++
T Consensus       149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~~~G~i  212 (220)
T cd03293         149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA------VFLADRVVVLSARPGRI  212 (220)
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH------HHhCCEEEEEECCCCEE
Confidence            8888888      8887777777777653   234677779988864      36799999988  6765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.2e-19  Score=165.50  Aligned_cols=174  Identities=25%  Similarity=0.336  Sum_probs=120.5

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|++|+|++  +|+++++.+.+ |++++|+|.||||||||+|+|+|.+.            |++|+  ++|+.+.+
T Consensus         8 ll~~~~i~K~FggV~AL~~v~l~v~~-GEV~aL~GeNGAGKSTLmKiLsGv~~------------p~~G~I~~~G~~~~~   74 (500)
T COG1129           8 LLELRGISKSFGGVKALDGVSLTVRP-GEVHALLGENGAGKSTLMKILSGVYP------------PDSGEILIDGKPVAF   74 (500)
T ss_pred             eeeeecceEEcCCceeeccceeEEeC-ceEEEEecCCCCCHHHHHHHHhCccc------------CCCceEEECCEEccC
Confidence            4678999999998  89999999998 99999999999999999999999997            88888  88998888


Q ss_pred             eCHHHHHHH----h-hccchhhhh-----eeccccc----C-ccHHHH----HHHHhc-C----CcE----EEEeCHHHH
Q 043263          143 VSKEEFLQM----V-DKNELLEYA-----LVYGDYK----G-IPKKQI----REYMAK-G----YDI----VLRVDIQGA  194 (286)
Q Consensus       143 ~~~~~~~~~----i-~~~~~~~~~-----~~~~~~~----~-~~~~~i----~~~~~~-g----~~~----v~~~~~q~v  194 (286)
                      .++.+-...    + +...+.++.     .+.+...    + ++++..    .+.+.. +    .+.    +..+++|.+
T Consensus        75 ~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V  154 (500)
T COG1129          75 SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV  154 (500)
T ss_pred             CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH
Confidence            777664442    1 222222222     2222211    1 222222    222331 1    111    123577999


Q ss_pred             HHHHHHhCCCcEEEEEecCCH-------HH---HHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVFLAAESE-------MA---LVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Illd~~~~-------~~---l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|||++..++. +|++|+|+-       +.   ++++|++++ -+...|+||++..      ...||+|.|+.||+.
T Consensus       155 eIArAl~~~ar-llIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G-v~ii~ISHrl~Ei------~~i~DritVlRDG~~  223 (500)
T COG1129         155 EIARALSFDAR-VLILDEPTAALTVKETERLFDLIRRLKAQG-VAIIYISHRLDEV------FEIADRITVLRDGRV  223 (500)
T ss_pred             HHHHHHhcCCC-EEEEcCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHH------HHhcCEEEEEeCCEE
Confidence            99999986555 555565552       23   334555544 3788889999987      589999999999964

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.3e-20  Score=160.89  Aligned_cols=175  Identities=16%  Similarity=0.146  Sum_probs=115.3

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +.++|+++.|+ .  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         4 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   70 (277)
T PRK13652          4 IETRDLCYSYSGSKEALNNINFIAPR-NSRIAVIGPNGAGKSTLFRHFNGILK------------PTSGSVLIRGEPITK   70 (277)
T ss_pred             EEEEEEEEEeCCCCceeeEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEECCc
Confidence            45678888885 2  79999999998 99999999999999999999999987            56665  56665432


Q ss_pred             eCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHHHH
Q 043263          143 VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       143 ~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~iar  198 (286)
                      .+...+...+   .+.        ...++..+.....+...+    .+.++         +......+++|++|++.+|+
T Consensus        71 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lar  150 (277)
T PRK13652         71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG  150 (277)
T ss_pred             CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence            2222222221   111        111111111111122221    12222         23334556788999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.+.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~------~~~~drv~~l~~G~i  216 (277)
T PRK13652        151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV------PEMADYIYVMDKGRI  216 (277)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEECCeE
Confidence            99988888887      6766667776666542   234677779988874      368999999988864

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.77  E-value=1.3e-20  Score=161.98  Aligned_cols=175  Identities=16%  Similarity=0.205  Sum_probs=113.4

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~~~   68 (252)
T TIGR03005         2 RFSDVTKRFGILTVLDGLNFSVAA-GEKVALIGPSGSGKSTILRILMTLEP------------IDEGQIQVEGEQLYHMP   68 (252)
T ss_pred             EEEEEEEEeCCeeEEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccc
Confidence            46788888875  78999999998 99999999999999999999999986            55555  5565443211


Q ss_pred             ----------H---HHHHHHh----hccchhhhheecccc-------cCccH----HHHHHH---------HhcCCcEEE
Q 043263          145 ----------K---EEFLQMV----DKNELLEYALVYGDY-------KGIPK----KQIREY---------MAKGYDIVL  187 (286)
Q Consensus       145 ----------~---~~~~~~i----~~~~~~~~~~~~~~~-------~~~~~----~~i~~~---------~~~g~~~v~  187 (286)
                                .   ..++..+    ++..+.....+..++       .+...    +.+.+.         +......++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS  148 (252)
T TIGR03005        69 GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLS  148 (252)
T ss_pred             cccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcC
Confidence                      0   1112111    111111111111110       11111    112222         223334577


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +|+.|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+++++++
T Consensus       149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~  222 (252)
T TIGR03005       149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA------REFADRVCFFDK  222 (252)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHhcCEEEEEEC
Confidence            8899999999999988888877      7777677776666543   234677789988874      367999999998


Q ss_pred             CCHH
Q 043263          259 GKLD  262 (286)
Q Consensus       259 G~i~  262 (286)
                      |++.
T Consensus       223 G~i~  226 (252)
T TIGR03005       223 GRIV  226 (252)
T ss_pred             CEEE
Confidence            8763

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.77  E-value=4.2e-20  Score=157.43  Aligned_cols=171  Identities=18%  Similarity=0.255  Sum_probs=112.2

Q ss_pred             HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++|+++.|+.    .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  ++|.++..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~   68 (237)
T cd03252           2 TFEHVRFRYKPDGPVILDNISLRIKP-GEVVGIVGRSGSGKSTLTKLIQRFYV------------PENGRVLVDGHDLAL   68 (237)
T ss_pred             EEEEEEEecCCCCccceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCeehHh
Confidence            35677777752    68889999998 99999999999999999999999986            55665  56655433


Q ss_pred             eCHHHHHHHh---hcc------chhhhheecccccCccHHHHH---------HH-----------HhcCCcEEEEeCHHH
Q 043263          143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIR---------EY-----------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~---------~~-----------~~~g~~~v~~~~~q~  193 (286)
                      .+...++..+   .+.      ...++..+...  ......+.         +.           +......+++|++|+
T Consensus        69 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr  146 (237)
T cd03252          69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR  146 (237)
T ss_pred             cCHHHHhhcEEEEcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence            3332222211   111      11122111110  11111111         11           122335677889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..       ..||+++++++|++
T Consensus       147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-------~~~d~v~~l~~G~i  214 (237)
T cd03252         147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-------KNADRIIVMEKGRI  214 (237)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------HhCCEEEEEECCEE
Confidence            9999999988888887      77777777777776542 34666778988773       46999999998876

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.77  E-value=6.9e-20  Score=153.63  Aligned_cols=172  Identities=17%  Similarity=0.181  Sum_probs=110.2

Q ss_pred             hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee----
Q 043263           70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF----  141 (286)
Q Consensus        70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~----  141 (286)
                      ++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++.    
T Consensus         2 ~~~l~~~~~~~~~l~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~~~   68 (213)
T cd03235           2 VEDLTVSYGGHPVLEDVSFEVKP-GEFLAIVGPNGAGKSTLLKAILGLLK------------PTSGSIRVFGKPLEKERK   68 (213)
T ss_pred             cccceeEECCEEeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCCCEEEECCccHHHHHh
Confidence            5678888875  78999999998 99999999999999999999999986            56665  5554431    


Q ss_pred             ---eeCHHHHHHHhhccchhhhheeccccc--------CccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHh
Q 043263          142 ---FVSKEEFLQMVDKNELLEYALVYGDYK--------GIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       142 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~  201 (286)
                         ++.++............++.......+        ....+.+.++         +......+++|++|++.+|++++
T Consensus        69 ~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  148 (213)
T cd03235          69 RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV  148 (213)
T ss_pred             heEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence               111100000000011112211100000        0011122222         23334567789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|.
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~~~  209 (213)
T cd03235         149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV------LEYFDRVLLLNRTV  209 (213)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEcCcE
Confidence            88888888      7777777777766653  233667779988874      36799999998763

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.77  E-value=1.8e-20  Score=156.89  Aligned_cols=170  Identities=16%  Similarity=0.249  Sum_probs=109.4

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..  
T Consensus         2 ~~~~l~~~~~~~~~l~~v~~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~--   66 (210)
T cd03269           2 EVENVTKRFGRVTALDDISFSVEK-GEIFGLLGPNGAGKTTTIRMILGIIL------------PDSGEVLFDGKPLDI--   66 (210)
T ss_pred             EEEEEEEEECCEEEEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCCchhH--
Confidence            35677777764  68899999998 99999999999999999999999986            55555  45544321  


Q ss_pred             HHHHHHHh----hc------cchhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHh
Q 043263          145 KEEFLQMV----DK------NELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       145 ~~~~~~~i----~~------~~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~  201 (286)
                        ..+..+    ++      ....++.......++..    .+.+.+.+         ......+++|++|++.+|++++
T Consensus        67 --~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~  144 (210)
T cd03269          67 --AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI  144 (210)
T ss_pred             --HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHh
Confidence              011100    11      11122211111111111    11122221         2222446678999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|+++|+      ||+.+...+.+.|.+..  +.+...++|++...      ...||+++++++|++
T Consensus       145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~g~i  206 (210)
T cd03269         145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV------EELCDRVLLLNKGRA  206 (210)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH------HHhhhEEEEEeCCEE
Confidence            88887777      66666667766665432  33677778988764      367999999998875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.77  E-value=3.9e-20  Score=149.83  Aligned_cols=156  Identities=22%  Similarity=0.296  Sum_probs=103.9

Q ss_pred             hHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           70 LRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        70 ~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++|+++.|+.    .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         3 ~~~l~~~~~~~~~~~l~~i~~~i~~-G~~~~l~G~nGsGKstLl~~i~G~~~------------~~~G~i~~~g~~~~~~   69 (171)
T cd03228           3 FKNVSFSYPGRPKPVLKDVSLTIKP-GEKVAIVGPSGSGKSTLLKLLLRLYD------------PTSGEILIDGVDLRDL   69 (171)
T ss_pred             EEEEEEEcCCCCcccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCCEEEECCEEhhhc
Confidence            4566666643    58888888888 99999999999999999999999986            66676  567655333


Q ss_pred             CHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA  217 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~  217 (286)
                      +...++..+   .+.....   ..+..   .+.+.+      +.+|++|++.++++++.+|+++|+      ||+.+...
T Consensus        70 ~~~~~~~~i---~~~~~~~---~~~~~---t~~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~  134 (171)
T cd03228          70 DLESLRKNI---AYVPQDP---FLFSG---TIRENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL  134 (171)
T ss_pred             CHHHHHhhE---EEEcCCc---hhccc---hHHHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence            333322211   1110000   01110   111111      778999999999999988877777      66666667


Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          218 LVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       218 l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      +.+.+.+.. +.+...++|++...       ..||+++++++|+
T Consensus       135 l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~~~~l~~g~  171 (171)
T cd03228         135 ILEALRALAKGKTVIVIAHRLSTI-------RDADRIIVLDDGR  171 (171)
T ss_pred             HHHHHHHhcCCCEEEEEecCHHHH-------HhCCEEEEEcCCC
Confidence            767666542 23556668887764       3499999998774

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.77  E-value=1.6e-20  Score=153.17  Aligned_cols=159  Identities=16%  Similarity=0.197  Sum_probs=107.2

Q ss_pred             hHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           70 LRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        70 ~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++|+++.|+.    .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         3 ~~~~~~~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~~~~   69 (178)
T cd03247           3 INNVSFSYPEQEQQVLKNLSLELKQ-GEKIALLGRSGSGKSTLLQLLTGDLK------------PQQGEITLDGVPVSDL   69 (178)
T ss_pred             EEEEEEEeCCCCccceEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCEEHHHH
Confidence            4566676642    68888999998 99999999999999999999999986            66776  566544221


Q ss_pred             CHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA  217 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~  217 (286)
                       ...++..+   .+.....   .++..   .+.+.+   ...+.+|++|++.++|+++.+|+++|+      ||+.+.+.
T Consensus        70 -~~~~~~~i---~~~~q~~---~~~~~---tv~~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~  136 (178)
T cd03247          70 -EKALSSLI---SVLNQRP---YLFDT---TLRNNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ  136 (178)
T ss_pred             -HHHHHhhE---EEEccCC---eeecc---cHHHhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence             11222111   1111000   01110   112212   355778999999999999988888887      77766777


Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          218 LVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       218 l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+.|.+.. +.+...++|....       ...||+++++++|++
T Consensus       137 l~~~l~~~~~~~tii~~sh~~~~-------~~~~d~~~~l~~g~i  174 (178)
T cd03247         137 LLSLIFEVLKDKTLIWITHHLTG-------IEHMDKILFLENGKI  174 (178)
T ss_pred             HHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEE
Confidence            777776542 2355666887776       346999999998875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=5.5e-20  Score=159.78  Aligned_cols=175  Identities=13%  Similarity=0.085  Sum_probs=113.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-  142 (286)
                      ++++||++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++.. 
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~   68 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSL-SPVTGLVGANGCGKSTLFMNLSGLLR------------PQKGAVLWQGKPLDYS   68 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCccEEEECCEEcccc
Confidence            456788888875  78999999998 99999999999999999999999986            55665  55655421 


Q ss_pred             -eCHHHHHHHh---hcc-c-------hhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263          143 -VSKEEFLQMV---DKN-E-------LLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       143 -~~~~~~~~~i---~~~-~-------~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ia  197 (286)
                       .....++..+   .+. .       ..++.......++...    +.+.+++         ......+++|++|++.+|
T Consensus        69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la  148 (271)
T PRK13638         69 KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA  148 (271)
T ss_pred             cCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence             1111222111   111 1       1111111001111111    1122222         222345678999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++
T Consensus       149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~------~~~~d~i~~l~~G~i  214 (271)
T PRK13638        149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQI  214 (271)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999988888888      7777777777766653  234666778988874      367999999988875

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.77  E-value=4.7e-20  Score=156.41  Aligned_cols=174  Identities=16%  Similarity=0.124  Sum_probs=113.5

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~   68 (230)
T TIGR03410         2 EVSNLNVYYGQSHILRGVSLEVPK-GEVTCVLGRNGVGKTTLLKTLMGLLP------------VKSGSIRLDGEDITKLP   68 (230)
T ss_pred             EEEeEEEEeCCeEEecceeeEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEECCCCC
Confidence            45778888875  78999999998 99999999999999999999999986            55665  5555443333


Q ss_pred             HHHH-HHH---hhcc-ch------hhhheecccccCccH----HHHH-------HHHhcCCcEEEEeCHHHHHHHHHHhC
Q 043263          145 KEEF-LQM---VDKN-EL------LEYALVYGDYKGIPK----KQIR-------EYMAKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       145 ~~~~-~~~---i~~~-~~------~~~~~~~~~~~~~~~----~~i~-------~~~~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      .... ...   +.+. .+      .++..+....++...    +.+.       .........+++|+.|++.++++++.
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  148 (230)
T TIGR03410        69 PHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT  148 (230)
T ss_pred             HHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            2211 111   1111 11      111111000111111    1111       11223334567889999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++|+      ||+.+...+.+.|.+..   +.+...++|+++..      ...||+|+++++|++
T Consensus       149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~v~~l~~g~i  210 (230)
T TIGR03410       149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA------RELADRYYVMERGRV  210 (230)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            8888888      77777777777776532   34667778988874      357999999988865

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=3e-20  Score=162.50  Aligned_cols=175  Identities=11%  Similarity=0.070  Sum_probs=115.0

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ++++||++.|+.       +|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~L~Gl~~------------p~~G~i~~~g~   69 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQ-GKYYAIVGQTGSGKSTLIQNINALLK------------PTTGTVTVDDI   69 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            456788888852       78999999998 99999999999999999999999986            56665  5665


Q ss_pred             ceeeeC----HHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHH----------hcCCcEEEEe
Q 043263          139 DYFFVS----KEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYM----------AKGYDIVLRV  189 (286)
Q Consensus       139 ~~~~~~----~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~----------~~g~~~v~~~  189 (286)
                      ++....    ...++..+   .+.        .+.++..+.....+...+    .+.+++          ......+++|
T Consensus        70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  149 (286)
T PRK13646         70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG  149 (286)
T ss_pred             ECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence            543211    11222211   111        111221111001112211    122221          2233456678


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++|++.+|++++.+|+++|+      ||+.+...+.+.+.+.   .+.|...++|+++..      ...||+|+++++|+
T Consensus       150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~------~~~~dri~~l~~G~  223 (286)
T PRK13646        150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV------ARYADEVIVMKEGS  223 (286)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCE
Confidence            99999999999989988888      7777777776666542   345778889998874      36799999998886


Q ss_pred             H
Q 043263          261 L  261 (286)
Q Consensus       261 i  261 (286)
                      +
T Consensus       224 i  224 (286)
T PRK13646        224 I  224 (286)
T ss_pred             E
Confidence            4

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.77  E-value=3e-20  Score=161.25  Aligned_cols=176  Identities=16%  Similarity=0.168  Sum_probs=115.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         7 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~   73 (269)
T PRK11831          7 LVDMRGVSFTRGNRCIFDNISLTVPR-GKITAIMGPSGIGKTTLLRLIGGQIA------------PDHGEILFDGENIPA   73 (269)
T ss_pred             eEEEeCeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEccc
Confidence            4788999999975  68999999998 99999999999999999999999986            55665  55655432


Q ss_pred             eCHHH---HHHHh----hccc------hhhhheeccccc-CccH----HHHHHH---------HhcCCcEEEEeCHHHHH
Q 043263          143 VSKEE---FLQMV----DKNE------LLEYALVYGDYK-GIPK----KQIREY---------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~~---~~~~i----~~~~------~~~~~~~~~~~~-~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~  195 (286)
                      .+...   ++..+    ++..      ..++.......+ ....    +.+.+.         .......+++|++|++.
T Consensus        74 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~  153 (269)
T PRK11831         74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA  153 (269)
T ss_pred             cChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence            22211   11111    1111      111111100000 1111    111122         22233457788999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++|++
T Consensus       154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~------~~~~d~v~~l~~G~i  222 (269)
T PRK11831        154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV------LSIADHAYIVADKKI  222 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH------HHhhCEEEEEECCEE
Confidence            99999988888877      7777677776666653   234677779988764      367999999988865

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=1.4e-19  Score=164.07  Aligned_cols=177  Identities=17%  Similarity=0.177  Sum_probs=121.3

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..+.+.++.+.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~L~~isl~i~~-Gei~~LvG~NGsGKSTLLr~I~Gl~~------------p~sG~I~i~G~~i~   93 (400)
T PRK10070         27 QGLSKEQILEKTGLSLGVKDASLAIEE-GEIFVIMGLSGSGKSTMVRLLNRLIE------------PTRGQVLIDGVDIA   93 (400)
T ss_pred             ccccHHHHHhhcCCeEEEEeEEEEEcC-CCEEEEECCCCchHHHHHHHHHcCCC------------CCCCEEEECCEECC
Confidence            34677888888886  68999999998 99999999999999999999999986            67776  6777665


Q ss_pred             eeCHHHHHH----H---h-hccchhhhheeccc------ccCccH----HHHHHHH---------hcCCcEEEEeCHHHH
Q 043263          142 FVSKEEFLQ----M---V-DKNELLEYALVYGD------YKGIPK----KQIREYM---------AKGYDIVLRVDIQGA  194 (286)
Q Consensus       142 ~~~~~~~~~----~---i-~~~~~~~~~~~~~~------~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v  194 (286)
                      ..+...+..    .   + ++..+..+..+..+      .++...    +.+.+++         ......+++|++|++
T Consensus        94 ~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv  173 (400)
T PRK10070         94 KISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRV  173 (400)
T ss_pred             cCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHH
Confidence            444433221    1   1 11112111111111      112221    1222222         223345678899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+||+++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~------~~~~Dri~vL~~G~i  243 (400)
T PRK10070        174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA------MRIGDRIAIMQNGEV  243 (400)
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            999999988888888      7777777777766542   244777789988875      478999999998865

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=1e-18  Score=148.78  Aligned_cols=163  Identities=21%  Similarity=0.254  Sum_probs=121.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh-----
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV-----  152 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i-----  152 (286)
                      .+.+.++.++. |+|.+|+|-||||||||+++|.++.+            |..|+  ++|.|+..++..+++...     
T Consensus        43 Gv~~~sl~v~~-GeIfViMGLSGSGKSTLvR~~NrLie------------pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~s  109 (386)
T COG4175          43 GVNDASLDVEE-GEIFVIMGLSGSGKSTLVRLLNRLIE------------PTRGEILVDGKDIAKLSAAELRELRRKKIS  109 (386)
T ss_pred             eeccceeeecC-CeEEEEEecCCCCHHHHHHHHhccCC------------CCCceEEECCcchhcCCHHHHHHHHhhhhh
Confidence            48888999998 99999999999999999999999987            88888  899999988888776643     


Q ss_pred             ---hccchhhhheeccc------ccCccHHHHHH----H---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          153 ---DKNELLEYALVYGD------YKGIPKKQIRE----Y---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       153 ---~~~~~~~~~~~~~~------~~~~~~~~i~~----~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                         ++-.++.+..+..|      ..+.++++-++    +         ..+...-+++|..||+.+|||+..+|+++++ 
T Consensus       110 MVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD  189 (386)
T COG4175         110 MVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD  189 (386)
T ss_pred             hhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec
Confidence               33333333333333      34555443222    2         2233456778899999999999988888877 


Q ss_pred             -----EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 -----LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                           |||--...++.-|.   ++-..|+..|+|+++.+      ++..|+|.++.+|.+
T Consensus       190 EaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEA------lriG~rIaimkdG~i  243 (386)
T COG4175         190 EAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA------LRIGDRIAIMKDGEI  243 (386)
T ss_pred             CchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH------HhccceEEEecCCeE
Confidence                 77765555554433   33445888899999998      699999999999975

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.77  E-value=3.8e-20  Score=157.91  Aligned_cols=177  Identities=18%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      ++++||++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++....+.+.          ++|.++...+.
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----------~~g~~~~~~~~   71 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPS-GELVALLGPSGSGKTTLLRLIAGLERPDSGTIL----------FGGEDATDVPV   71 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECCcCCc
Confidence            456788888875  79999999998 999999999999999999999999863333322          34433211110


Q ss_pred             H--HHH------HHhhccchhhhheecccccCc----c----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263          146 E--EFL------QMVDKNELLEYALVYGDYKGI----P----KKQIREY---------MAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       146 ~--~~~------~~i~~~~~~~~~~~~~~~~~~----~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral  200 (286)
                      .  .+.      .........++..+....++.    .    .+.+.++         .......+++|++|++.+|+++
T Consensus        72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  151 (239)
T cd03296          72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL  151 (239)
T ss_pred             cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence            0  000      000011112221111000000    1    1112222         2223345778999999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~------~~~~d~i~~l~~G~i  215 (239)
T cd03296         152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA------LEVADRVVVMNKGRI  215 (239)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCeE
Confidence            988888887      7777677777766643   234677789988764      367999999988875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.5e-20  Score=159.80  Aligned_cols=177  Identities=18%  Similarity=0.203  Sum_probs=116.9

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..+.++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++.
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~   72 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPD-GHFTAIIGPNGCGKSTLLRTLSRLMT------------PAHGHVWLDGEHIQ   72 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCCcEEEECCEEhh
Confidence            34778899999975  79999999998 99999999999999999999999986            55555  5565443


Q ss_pred             eeCHHHHHHHh----hccch------hhhheec--cc---c--c-CccHHHHHHH---------HhcCCcEEEEeCHHHH
Q 043263          142 FVSKEEFLQMV----DKNEL------LEYALVY--GD---Y--K-GIPKKQIREY---------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       142 ~~~~~~~~~~i----~~~~~------~~~~~~~--~~---~--~-~~~~~~i~~~---------~~~g~~~v~~~~~q~v  194 (286)
                      ..+...+...+    ++..+      .++....  ..   .  . ....+.+.+.         ..+....+++|++|++
T Consensus        73 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv  152 (265)
T PRK10253         73 HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRA  152 (265)
T ss_pred             hCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHH
Confidence            22222222211    11111      1111110  00   0  0 0011112222         2334456778999999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+++++++|++
T Consensus       153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i  222 (265)
T PRK10253        153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA------CRYASHLIALREGKI  222 (265)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999999988888887      7777676776666543   234667778988864      478999999988864

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.77  E-value=5e-20  Score=155.99  Aligned_cols=175  Identities=17%  Similarity=0.141  Sum_probs=111.8

Q ss_pred             HHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      +.++||++.|+      ..++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.+
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~   68 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKK-GETLGLVGESGSGKSTLARAILGLLK------------PTSGSIIFDGKD   68 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEE
Confidence            34667788775      258899999998 99999999999999999999999986            55665  55655


Q ss_pred             eeeeCH---HHHHHHh---hccc---hhhhheeccc------ccC--ccH---HHH-HHH----------HhcCCcEEEE
Q 043263          140 YFFVSK---EEFLQMV---DKNE---LLEYALVYGD------YKG--IPK---KQI-REY----------MAKGYDIVLR  188 (286)
Q Consensus       140 ~~~~~~---~~~~~~i---~~~~---~~~~~~~~~~------~~~--~~~---~~i-~~~----------~~~g~~~v~~  188 (286)
                      +...+.   ..++..+   .+..   +........+      .++  ...   +.. .+.          +......+++
T Consensus        69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~  148 (228)
T cd03257          69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSG  148 (228)
T ss_pred             ccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCH
Confidence            433221   1111111   1111   1111111111      000  000   110 111          1222344667


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      |++|++.+|++++.+|+++|+      ||+.+.+.+.+.|.+..   +.+...++|+++..      ...||+|+++++|
T Consensus       149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G  222 (228)
T cd03257         149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV------AKIADRVAVMYAG  222 (228)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCeEEEEeCC
Confidence            899999999999988888887      77776777777766532   34667779988864      3579999999998


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       223 ~i  224 (228)
T cd03257         223 KI  224 (228)
T ss_pred             EE
Confidence            75

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=2.2e-18  Score=134.21  Aligned_cols=175  Identities=17%  Similarity=0.192  Sum_probs=111.1

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++++...-++  +|+++++.+.+ |+.++|+|||||||||++|+++.+..            |++|.  +.|+++....
T Consensus         5 e~kq~~y~a~~a~il~~isl~v~~-Ge~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~   71 (223)
T COG4619           5 ELKQVGYLAGDAKILNNISLSVRA-GEFIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLK   71 (223)
T ss_pred             HHHHHHhhcCCCeeecceeeeecC-CceEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccC
Confidence            45555544444  78999999998 99999999999999999999999986            88888  7899999999


Q ss_pred             HHHHHHHh----hccch----hhhheeccccc---CccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          145 KEEFLQMV----DKNEL----LEYALVYGDYK---GIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       145 ~~~~~~~i----~~~~~----~~~~~~~~~~~---~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                      ++.++..+    ++..+    ++++..+++..   ..+.+...+.          +.+....++||++|+++++|.+.--
T Consensus        72 pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~  151 (223)
T COG4619          72 PEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFM  151 (223)
T ss_pred             hHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcC
Confidence            99888765    33332    34444444321   1222222221          3334456789999999999999744


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          204 SAVFVF------LAAESEMALVERLVERKT---ENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |.++++      ||+.+...+.+-|...-.   ....-|+|.-+.+      .+.||+++-...|.+.
T Consensus       152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa------~rha~k~itl~~G~~~  213 (223)
T COG4619         152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA------IRHADKVITLQPGHAG  213 (223)
T ss_pred             CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH------hhhhheEEEeccCccc
Confidence            554444      444433333222221110   0111224433332      5788988887777553

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.77  E-value=7.5e-20  Score=157.14  Aligned_cols=175  Identities=18%  Similarity=0.181  Sum_probs=114.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   70 (250)
T PRK11264          4 IEVKNLVKKFHGQTVLHGIDLEVKP-GEVVAIIGPSGSGKTTLLRCINLLEQ------------PEAGTIRVGDITIDTA   70 (250)
T ss_pred             EEEeceEEEECCeeeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEcccc
Confidence            567888988875  78999999998 99999999999999999999999986            55555  455544321


Q ss_pred             C--------HHHHHHHh---hcc-------chhhhheeccc-ccCccH----HHHHHHH---------hcCCcEEEEeCH
Q 043263          144 S--------KEEFLQMV---DKN-------ELLEYALVYGD-YKGIPK----KQIREYM---------AKGYDIVLRVDI  191 (286)
Q Consensus       144 ~--------~~~~~~~i---~~~-------~~~~~~~~~~~-~~~~~~----~~i~~~~---------~~g~~~v~~~~~  191 (286)
                      .        ...++..+   .+.       ...++...... ..+...    +.+.+.+         ......+++|++
T Consensus        71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         71 RSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             ccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence            1        11111111   111       11222111000 011111    1122221         223345778999


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++
T Consensus       151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~------~~~~d~i~~l~~G~i  222 (250)
T PRK11264        151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA------RDVADRAIFMDQGRI  222 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence            999999999988888888      7777777777766543  234666778988764      367999999988865

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.8e-20  Score=156.68  Aligned_cols=174  Identities=16%  Similarity=0.095  Sum_probs=114.2

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+.      +++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.+
T Consensus         6 l~~~~l~~~~~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~   72 (233)
T PRK11629          6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGE-GEMMAIVGSSGSGKSTLLHLLGGLDT------------PTSGDVIFNGQP   72 (233)
T ss_pred             EEEEeEEEEcCCCCcceeeEEeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEE
Confidence            667888888852      68999999998 99999999999999999999999986            56665  56665


Q ss_pred             eeeeCHHHH---H-HHh---hcc-------chhhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHH
Q 043263          140 YFFVSKEEF---L-QMV---DKN-------ELLEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~---~-~~i---~~~-------~~~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q  192 (286)
                      +...+....   + ..+   .+.       ...++..+.....+...    +.+.+.+         ......+++|++|
T Consensus        73 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q  152 (233)
T PRK11629         73 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ  152 (233)
T ss_pred             cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence            543333221   1 111   111       11222111000111111    1222222         2233456678999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..       ..+|+++++++|++
T Consensus       153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~-------~~~~~~~~l~~G~i  223 (233)
T PRK11629        153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA-------KRMSRQLEMRDGRL  223 (233)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-------HhhCEEEEEECCEE
Confidence            99999999988888888      7777777777766653   244677789988773       44578888888875

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.77  E-value=1.1e-19  Score=162.96  Aligned_cols=181  Identities=20%  Similarity=0.222  Sum_probs=127.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++++++.|++  +.+++++.+.+ |+|.+|+|.||+|||||+++|.|+|.            |++|+  ++|+.+.+
T Consensus         4 ~l~~~~itK~f~~~~And~V~l~v~~-GeIHaLLGENGAGKSTLm~iL~G~~~------------P~~GeI~v~G~~v~~   70 (501)
T COG3845           4 ALEMRGITKRFPGVVANDDVSLSVKK-GEIHALLGENGAGKSTLMKILFGLYQ------------PDSGEIRVDGKEVRI   70 (501)
T ss_pred             eEEEeccEEEcCCEEecCceeeeecC-CcEEEEeccCCCCHHHHHHHHhCccc------------CCcceEEECCEEecc
Confidence            3677899999998  78999999998 99999999999999999999999997            99998  89999988


Q ss_pred             eCHHHHHHH----h-hccchhhhheeccccc---------CccHH----HHHHHHhc-C--------CcEEEEeCHHHHH
Q 043263          143 VSKEEFLQM----V-DKNELLEYALVYGDYK---------GIPKK----QIREYMAK-G--------YDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~~~~~~----i-~~~~~~~~~~~~~~~~---------~~~~~----~i~~~~~~-g--------~~~v~~~~~q~v~  195 (286)
                      .++.+....    + +.-.++++.++..|+.         .....    .+.+..+. |        -..+.-|+.||+.
T Consensus        71 ~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE  150 (501)
T COG3845          71 KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE  150 (501)
T ss_pred             CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence            777654432    2 2223344444433321         11222    22222111 1        1123347889999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVK  266 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~  266 (286)
                      |++++++++.++||      |.|...+.+.+.++.  ..+.++..|+|++...      ...||++-|+..|++..+++
T Consensus       151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev------~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV------MAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH------HHhhCeeEEEeCCeEEeeec
Confidence            99999988888888      444334455555443  2345889999999997      48899999999997644444

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.77  E-value=6.1e-20  Score=158.33  Aligned_cols=175  Identities=19%  Similarity=0.252  Sum_probs=113.0

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------p~~G~i~~~g~~~~~~   69 (258)
T PRK13548          3 LEARNLSVRLGGRTLLDDVSLTLRP-GEVVAILGPNGAGKSTLLRALSGELS------------PDSGEVRLNGRPLADW   69 (258)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEEcccC
Confidence            456788888875  79999999998 99999999999999999999999986            56665  556554332


Q ss_pred             CHHHHHHHh----hccc------hhhhheecccccCc----cHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHH
Q 043263          144 SKEEFLQMV----DKNE------LLEYALVYGDYKGI----PKKQIREYM---------AKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       144 ~~~~~~~~i----~~~~------~~~~~~~~~~~~~~----~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral  200 (286)
                      +...+...+    ++..      ..++..........    ..+.+.+++         ......+++|++|++.+|+++
T Consensus        70 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al  149 (258)
T PRK13548         70 SPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL  149 (258)
T ss_pred             CHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence            322222211    1111      12221111111111    111222222         223345667899999999999


Q ss_pred             h------CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 L------GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~------~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +      .+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  219 (258)
T PRK13548        150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLA------ARYADRIVLLHQGRL  219 (258)
T ss_pred             hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhcCEEEEEECCEE
Confidence            9      47777777      7777666666666542   234667778988764      368999999988865

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=6e-20  Score=159.66  Aligned_cols=174  Identities=19%  Similarity=0.173  Sum_probs=113.0

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++|+++.|+.   ++.++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   68 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKK-GEYIGIIGKNGSGKSTLALHLNGLLR------------PQKGKVLVSGIDTGD   68 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEECCc
Confidence            346788888842   79999999998 99999999999999999999999986            55665  55554432


Q ss_pred             eC-HHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          143 VS-KEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       143 ~~-~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      .+ ...+...+   .+.        ...++..+....++...    +.+.+.         .......+++|+.|++.+|
T Consensus        69 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  148 (274)
T PRK13644         69 FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALA  148 (274)
T ss_pred             cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHH
Confidence            21 11222111   111        11222211111111221    112222         2223345667899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..       ..||+|+++++|++
T Consensus       149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-------~~~d~v~~l~~G~i  213 (274)
T PRK13644        149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-------HDADRIIVMDRGKI  213 (274)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-------hhCCEEEEEECCEE
Confidence            999988888888      7777777777766543  244777779988873       46999999988764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.77  E-value=6.4e-20  Score=158.08  Aligned_cols=175  Identities=17%  Similarity=0.205  Sum_probs=116.5

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~~~   68 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPP-GSLTGLLGPNGSGKSTLLRLLAGALR------------PDAGTVDLAGVDLHGL   68 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCCEEEECCEEcccC
Confidence            456788888875  79999999998 99999999999999999999999986            66665  666655433


Q ss_pred             CHHHHHHHh---hcc-------chhhhheecc----cccCc----cHHHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          144 SKEEFLQMV---DKN-------ELLEYALVYG----DYKGI----PKKQIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~~~~~~i---~~~-------~~~~~~~~~~----~~~~~----~~~~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      +....+..+   .+.       ...++.....    ..+..    ..+.+.+.         .......+.+|++|++.+
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  148 (256)
T TIGR03873        69 SRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHV  148 (256)
T ss_pred             CHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence            333322211   111       1122221110    00010    11122222         222334566789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+..  +.+...++|+++..      ...||+|+++++|++
T Consensus       149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  215 (256)
T TIGR03873       149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLA------ASYCDHVVVLDGGRV  215 (256)
T ss_pred             HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEeCCCE
Confidence            9999988888888      77777777777666532  34667778988874      378999999988875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=7e-20  Score=159.92  Aligned_cols=175  Identities=15%  Similarity=0.144  Sum_probs=114.9

Q ss_pred             HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC---CC--cCC
Q 043263           67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP---GE--VNG  137 (286)
Q Consensus        67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~---G~--~~g  137 (286)
                      .++++|+++.|+.    .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..   |+  ++|
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~-Ge~~~I~G~nGaGKSTLl~~l~G~~~------------p~~g~~G~i~i~g   71 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALNDISFSIPR-GSWTALIGHNGSGKSTISKLINGLLL------------PDDNPNSKITVDG   71 (282)
T ss_pred             eEEEEEEEEEcCCCCccceeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcccC------------CCCCCCcEEEECC
Confidence            3677888988853    68999999998 99999999999999999999999986            443   44  556


Q ss_pred             cceeeeCHHHHHHHh---hcc--------chhhhheecccccCccHHH----HHHH---------HhcCCcEEEEeCHHH
Q 043263          138 KDYFFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKKQ----IREY---------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~~----i~~~---------~~~g~~~v~~~~~q~  193 (286)
                      .++.......++..+   .+.        ...++..+....++...+.    +.++         +......+++|++|+
T Consensus        72 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr  151 (282)
T PRK13640         72 ITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR  151 (282)
T ss_pred             EECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence            554322222222211   111        1222221110111222211    2222         233344567789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+..   +.+...++|.++..       ..||+++++++|++
T Consensus       152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-------~~~d~i~~l~~G~i  221 (282)
T PRK13640        152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-------NMADQVLVLDDGKL  221 (282)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-------HhCCEEEEEECCEE
Confidence            9999999988888888      77777777777776532   34667778988763       46999999988865

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=4.6e-20  Score=158.88  Aligned_cols=175  Identities=17%  Similarity=0.216  Sum_probs=115.5

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~   69 (255)
T PRK11231          3 LRTENLTVGYGTKRILNDLSLSLPT-GKITALIGPNGCGKSTLLKCFARLLT------------PQSGTVFLGDKPISML   69 (255)
T ss_pred             EEEEeEEEEECCEEEEeeeeeEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCCcEEEECCEEhHHC
Confidence            456788888875  78999999998 99999999999999999999999986            55555  555543222


Q ss_pred             CHHHHHHHh----hcc------chhhhheecc----cccC----ccHHHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          144 SKEEFLQMV----DKN------ELLEYALVYG----DYKG----IPKKQIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~~~~~~i----~~~------~~~~~~~~~~----~~~~----~~~~~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      +...+...+    ++.      ...++..+..    ..++    ...+.+.++         .......+++|++|++.+
T Consensus        70 ~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  149 (255)
T PRK11231         70 SSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFL  149 (255)
T ss_pred             CHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHH
Confidence            222222211    111      1111111100    0001    011122222         233445677899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i  216 (255)
T PRK11231        150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQA------SRYCDHLVVLANGHV  216 (255)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH------HHhcCEEEEEECCeE
Confidence            9999989988888      7777777777776653  234667778988874      368999999988865

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.76  E-value=5.6e-20  Score=163.50  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=117.7

Q ss_pred             HHHhHhHHHHhc---------------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC
Q 043263           67 IELLRSLEASLG---------------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR  131 (286)
Q Consensus        67 ~i~~~~v~~~~~---------------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~  131 (286)
                      .++++||++.|+               .+++++++.+.+ |++++|+|+||||||||+++|+|++.            |.
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~lvG~sGsGKSTLlk~i~Gl~~------------p~   74 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE-GETLGVVGESGCGKSTFARAIIGLVK------------AT   74 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHHCCCC------------CC
Confidence            366777777774               157889999998 99999999999999999999999986            66


Q ss_pred             CCC--cCCcceeeeCHHHHHH---H---hhccc---hhhhheecccc------c--CccHHH----HHHH----------
Q 043263          132 PGE--VNGKDYFFVSKEEFLQ---M---VDKNE---LLEYALVYGDY------K--GIPKKQ----IREY----------  178 (286)
Q Consensus       132 ~G~--~~g~~~~~~~~~~~~~---~---i~~~~---~~~~~~~~~~~------~--~~~~~~----i~~~----------  178 (286)
                      +|+  ++|.++...+...+..   .   +.|+.   +.....+..++      +  ....+.    +.+.          
T Consensus        75 ~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~  154 (331)
T PRK15079         75 DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL  154 (331)
T ss_pred             CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH
Confidence            666  6777665444433221   1   12221   11111111110      0  122211    1111          


Q ss_pred             HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCC
Q 043263          179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       179 ~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      +......+++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...
T Consensus       155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~------~~~  228 (331)
T PRK15079        155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV------KHI  228 (331)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHh
Confidence            2333356778999999999999988888888      7777677776666542   244778889999885      367


Q ss_pred             CcEEEECCCCCH
Q 043263          250 FDYVVVNAEGKL  261 (286)
Q Consensus       250 ~d~viv~~~G~i  261 (286)
                      ||+|+++.+|++
T Consensus       229 ~dri~vl~~G~i  240 (331)
T PRK15079        229 SDRVLVMYLGHA  240 (331)
T ss_pred             CCEEEEEECCEE
Confidence            999999988875

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=8.4e-20  Score=158.44  Aligned_cols=175  Identities=15%  Similarity=0.223  Sum_probs=115.4

Q ss_pred             HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .+.++|+++.|+.    .++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~-Ge~~~I~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~   73 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNIPK-GQWTSIVGHNGSGKSTIAKLMIGIEK------------VKSGEIFYNNQAI   73 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEEC
Confidence            4678899999963    68999999998 99999999999999999999999986            55565  566554


Q ss_pred             eeeCHHHHHHHh---hccc--hh-----hhheecc-cccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          141 FFVSKEEFLQMV---DKNE--LL-----EYALVYG-DYKGIPK----KQIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~--~~-----~~~~~~~-~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      ...+...++..+   .+..  ++     .++..+. ...+...    +.+.++         .......+++|++|++.+
T Consensus        74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  153 (269)
T PRK13648         74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAI  153 (269)
T ss_pred             CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHH
Confidence            333332222221   1111  11     1111111 0011111    112222         222334566789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..       ..||+|+++++|++
T Consensus       154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~-------~~~d~i~~l~~G~i  220 (269)
T PRK13648        154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA-------MEADHVIVMNKGTV  220 (269)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH-------hcCCEEEEEECCEE
Confidence            9999988888888      7777777777766653   234667778988764       35999999988875

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=5.5e-20  Score=161.94  Aligned_cols=177  Identities=15%  Similarity=0.082  Sum_probs=111.7

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY  140 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~  140 (286)
                      +.++||++.|+.       +|+++++.+.+ |++++|+|+||||||||+++|+|+++...+.+.          ++|.+.
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~-Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~----------~~g~~~   71 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQ-GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE----------WIFKDE   71 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE----------Eeceec
Confidence            456788888852       68899999998 999999999999999999999999873333322          333221


Q ss_pred             ee------------------------eCHHHHHHHh---hcc---ch-----hhhheecccccCccHHH----HHHH---
Q 043263          141 FF------------------------VSKEEFLQMV---DKN---EL-----LEYALVYGDYKGIPKKQ----IREY---  178 (286)
Q Consensus       141 ~~------------------------~~~~~~~~~i---~~~---~~-----~~~~~~~~~~~~~~~~~----i~~~---  178 (286)
                      ..                        .....++..+   .++   .+     .++..+....++...+.    +.++   
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~  151 (305)
T PRK13651         72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL  151 (305)
T ss_pred             ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence            00                        0111122111   111   11     12211111111222221    2222   


Q ss_pred             -------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 043263          179 -------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREE  243 (286)
Q Consensus       179 -------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~  243 (286)
                             .......+++|++|++++|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..   
T Consensus       152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~---  228 (305)
T PRK13651        152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV---  228 (305)
T ss_pred             cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH---
Confidence                   2223345667899999999999988888888      7777676776666542  244777889998865   


Q ss_pred             hhccCCCcEEEECCCCCH
Q 043263          244 VQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       244 ~~~~~~~d~viv~~~G~i  261 (286)
                         ...||+|+++++|++
T Consensus       229 ---~~~adrv~vl~~G~i  243 (305)
T PRK13651        229 ---LEWTKRTIFFKDGKI  243 (305)
T ss_pred             ---HHhCCEEEEEECCEE
Confidence               478999999998864

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=7.8e-20  Score=159.70  Aligned_cols=176  Identities=16%  Similarity=0.123  Sum_probs=117.0

Q ss_pred             HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      .++++|+++.|+ .  +++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++.
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~i~Gl~~------------p~~G~i~i~g~~~~   71 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKK-GEVTAILGGNGAGKSTLFQNLNGILK------------PSSGRILFDGKPID   71 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCccEEEECCEECC
Confidence            467889999995 3  79999999998 99999999999999999999999986            56665  6666542


Q ss_pred             e--eCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHH
Q 043263          142 F--VSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       142 ~--~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~  195 (286)
                      .  .....++..+   .+.        ...++..+....++.+.+    .+.++         .......+++|++|++.
T Consensus        72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~  151 (283)
T PRK13636         72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA  151 (283)
T ss_pred             CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH
Confidence            1  1112222221   111        111221110001122211    12222         22334556778999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+-|.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~------~~~~dri~~l~~G~i  220 (283)
T PRK13636        152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV------PLYCDNVFVMKEGRV  220 (283)
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99999988888888      7777676666655542   244777789998874      357999999988865

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=5.1e-20  Score=163.63  Aligned_cols=179  Identities=16%  Similarity=0.095  Sum_probs=118.4

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+.      +|+++++.+.+ |++++|+|+||||||||+++|+|+++..        ..+..|+  ++|.+
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~lvG~sGsGKSTL~~~l~Gll~~~--------~~~~~G~i~~~G~~   74 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQ-GEVVGIVGESGSGKSVSSLAIMGLIDYP--------GRVMAEKLEFNGQD   74 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCC--------CCCcceEEEECCEE
Confidence            467788888853      68999999998 9999999999999999999999987410        0024555  67777


Q ss_pred             eeeeCHHHHHHH-------hhccc---hhhhheecc-------cccCcc----HHHHHHHH------------hcCCcEE
Q 043263          140 YFFVSKEEFLQM-------VDKNE---LLEYALVYG-------DYKGIP----KKQIREYM------------AKGYDIV  186 (286)
Q Consensus       140 ~~~~~~~~~~~~-------i~~~~---~~~~~~~~~-------~~~~~~----~~~i~~~~------------~~g~~~v  186 (286)
                      +...+...+...       +.|+.   +.....+..       ...+..    .+.+.+++            ......+
T Consensus        75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L  154 (326)
T PRK11022         75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL  154 (326)
T ss_pred             CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence            655555444331       12221   110000000       001111    11222222            2333457


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++.
T Consensus       155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~------~~~adri~vm~  228 (326)
T PRK11022        155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALV------AEAAHKIIVMY  228 (326)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEE
Confidence            78999999999999989988888      7777777776666542   344778889999875      36899999999


Q ss_pred             CCCH
Q 043263          258 EGKL  261 (286)
Q Consensus       258 ~G~i  261 (286)
                      +|++
T Consensus       229 ~G~i  232 (326)
T PRK11022        229 AGQV  232 (326)
T ss_pred             CCEE
Confidence            8876

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.76  E-value=1.2e-19  Score=153.36  Aligned_cols=173  Identities=15%  Similarity=0.086  Sum_probs=111.9

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++++++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.+....
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~   89 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPR-GERIGLIGRNGAGKSTLLRLLAGIYP------------PDSGTVTVRGRVSSLL   89 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEchhh
Confidence            788999999987  79999999998 99999999999999999999999986            55555  445432210


Q ss_pred             CHHHHHHHhhccchhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                      ...  ..........++.......++...    +.+.+.         +......+++|++|++.+|++++.+|+++|+ 
T Consensus        90 ~~~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  167 (224)
T cd03220          90 GLG--GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID  167 (224)
T ss_pred             ccc--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            000  000001111111111100111111    111111         1222345667899999999999988888877 


Q ss_pred             -----EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 -----LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                           ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++
T Consensus       168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  220 (224)
T cd03220         168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI------KRLCDRALVLEKGKI  220 (224)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence                 7776666777766543  233667778887764      367999999998875

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=7.1e-20  Score=159.04  Aligned_cols=175  Identities=18%  Similarity=0.179  Sum_probs=115.0

Q ss_pred             HHHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .+.++|+++.|+  .  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~i   73 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINE-GEYVAILGHNGSGKSTISKILTGLLK------------PQSGEIKIDGITI   73 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEec
Confidence            367889999994  2  78999999998 99999999999999999999999986            55565  556554


Q ss_pred             eeeCHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          141 FFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      ...+...++..+   .+.        ...++........+...+    .+.+.         +......+++|++|++.+
T Consensus        74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  153 (271)
T PRK13632         74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAI  153 (271)
T ss_pred             CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHH
Confidence            322222222211   111        112222110000111111    11221         233445677899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.   ++.+...++|+++..       ..||+++++++|++
T Consensus       154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-------~~~d~v~~l~~G~i  220 (271)
T PRK13632        154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-------ILADKVIVFSEGKL  220 (271)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH-------hhCCEEEEEECCEE
Confidence            9999988888888      7776677777766653   224666778987763       46999999988875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.76  E-value=6.3e-20  Score=156.83  Aligned_cols=175  Identities=17%  Similarity=0.155  Sum_probs=114.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  ++|.++...
T Consensus         3 i~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~   69 (242)
T TIGR03411         3 LYLEGLSVSFDGFKALNDLSLYVDP-GELRVIIGPNGAGKTTMMDVITGKTR------------PDEGSVLFGGTDLTGL   69 (242)
T ss_pred             EEEEeeEEEcCCeEEeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEECCeecCCC
Confidence            457788888875  69999999998 99999999999999999999999986            66665  566554332


Q ss_pred             CHHHHHH-H---h-hcc------chhhhheecc--------cccCc----cHHHHHHHH---------hcCCcEEEEeCH
Q 043263          144 SKEEFLQ-M---V-DKN------ELLEYALVYG--------DYKGI----PKKQIREYM---------AKGYDIVLRVDI  191 (286)
Q Consensus       144 ~~~~~~~-~---i-~~~------~~~~~~~~~~--------~~~~~----~~~~i~~~~---------~~g~~~v~~~~~  191 (286)
                      +...... .   + ++.      ...++..+..        ..++.    ..+.+.+.+         ......+++|++
T Consensus        70 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~  149 (242)
T TIGR03411        70 PEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQK  149 (242)
T ss_pred             CHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            2222111 0   1 111      1122211110        00001    111222222         222334667899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++++      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~g~~  220 (242)
T TIGR03411       150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV------RSIADKVTVLHQGSV  220 (242)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEEECCeE
Confidence            999999999988888777      77777777777776532 33667778988874      367999999988875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=6.2e-20  Score=158.07  Aligned_cols=176  Identities=15%  Similarity=0.151  Sum_probs=116.2

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~   71 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVRE-QEIVSLIGPNGAGKTTVFNCLTGFYK------------PTGGTILLRGQHIEG   71 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcC-CeEEEEECCCCCCHHHHHHHHhCCcC------------CCcceEEECCEECCC
Confidence            4678899999975  79999999998 99999999999999999999999986            55555  55554432


Q ss_pred             eCHHHHHHH-----hhcc------chhhhheec----------ccccC------cc---HHHHHHH---------HhcCC
Q 043263          143 VSKEEFLQM-----VDKN------ELLEYALVY----------GDYKG------IP---KKQIREY---------MAKGY  183 (286)
Q Consensus       143 ~~~~~~~~~-----i~~~------~~~~~~~~~----------~~~~~------~~---~~~i~~~---------~~~g~  183 (286)
                      .+.......     .++.      ...++..+.          ...+.      ..   .+.+.+.         .....
T Consensus        72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  151 (255)
T PRK11300         72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA  151 (255)
T ss_pred             CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence            222211110     1111      111111110          00000      00   0112211         23334


Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      ..+++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+++
T Consensus       152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~------~~~~d~i~  225 (255)
T PRK11300        152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV------MGISDRIY  225 (255)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH------HHhCCEEE
Confidence            45678899999999999989988888      8887777777766643   234677778988875      36799999


Q ss_pred             ECCCCCH
Q 043263          255 VNAEGKL  261 (286)
Q Consensus       255 v~~~G~i  261 (286)
                      ++++|++
T Consensus       226 ~l~~g~i  232 (255)
T PRK11300        226 VVNQGTP  232 (255)
T ss_pred             EEECCeE
Confidence            9998875

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.76  E-value=1.3e-20  Score=162.06  Aligned_cols=172  Identities=16%  Similarity=0.205  Sum_probs=111.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce--
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY--  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~--  140 (286)
                      .++++|+++.|+.  .|+++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++  
T Consensus        12 ~l~i~~l~~~~~~~~il~~isl~i~~-Ge~~~I~G~NGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~   78 (257)
T PRK11247         12 PLLLNAVSKRYGERTVLNQLDLHIPA-GQFVAVVGRSGCGKSTLLRLLAGLET------------PSAGELLAGTAPLAE   78 (257)
T ss_pred             cEEEEEEEEEECCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEHHH
Confidence            4788999999975  78999999998 99999999999999999999999986            44444  333221  


Q ss_pred             -----eeeCHHHHHHHhhccchhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263          141 -----FFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       141 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~  206 (286)
                           .++.+..  .........++..+ . .+....+.+.++         +......+++|++|++.+|++++.+|++
T Consensus        79 ~~~~i~~v~q~~--~l~~~~tv~enl~~-~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l  154 (257)
T PRK11247         79 AREDTRLMFQDA--RLLPWKKVIDNVGL-G-LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL  154 (257)
T ss_pred             hhCceEEEecCc--cCCCCCcHHHHHHh-c-ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence                 1111000  00000111111111 0 000011122222         2233355778999999999999988888


Q ss_pred             EEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          207 FVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|.+
T Consensus       155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~------~~~~d~i~~l~~G~i  212 (257)
T PRK11247        155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA------VAMADRVLLIEEGKI  212 (257)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            888      7777777776666542   234677789988864      367999999887765

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.76  E-value=6.6e-20  Score=153.05  Aligned_cols=175  Identities=16%  Similarity=0.176  Sum_probs=116.9

Q ss_pred             HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++++|+++.|+.    .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~   72 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKA-GEKIGIVGRTGAGKSTLILALFRFLE------------AEEGKIEIDGIDI   72 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCeEEECCEEh
Confidence            3667788888862    68899999998 99999999999999999999999986            66666  566654


Q ss_pred             eeeCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHHh--cCCcEEEEeCHHHHHHHHHHhCCCcEEEE---
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYMA--KGYDIVLRVDIQGARTLRRILGDSAVFVF---  209 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~~--~g~~~v~~~~~q~v~iaral~~~~~~~Il---  209 (286)
                      ...+...++..+   .+...+....+..++.   ....+.+.+.+.  .....+.+|+.|++.+||+++.+|+++|+   
T Consensus        73 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  152 (207)
T cd03369          73 STIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA  152 (207)
T ss_pred             HHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            333333332221   1111111111111110   112233333332  33355677899999999999988888888   


Q ss_pred             ---EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 ---LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 ---ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                         ||+.+...+.+.|.+.. +.+...++|+++..       ..||+++++++|++
T Consensus       153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~-------~~~d~v~~l~~g~i  201 (207)
T cd03369         153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTI-------IDYDKILVMDAGEV  201 (207)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------hhCCEEEEEECCEE
Confidence               77776777777777642 34666778887763       34899999998875

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.8e-19  Score=154.00  Aligned_cols=175  Identities=9%  Similarity=0.105  Sum_probs=113.9

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         4 l~~~~l~~~~~~~~~l~~~sl~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   70 (241)
T PRK10895          4 LTAKNLAKAYKGRRVVEDVSLTVNS-GEIVGLLGPNGAGKTTTFYMVVGIVP------------RDAGNIIIDDEDISLL   70 (241)
T ss_pred             EEEeCcEEEeCCEEEEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCCC
Confidence            567888888875  78999999998 99999999999999999999999986            55565  556554332


Q ss_pred             CHHH-HHHHh----hcc------chhhhheeccccc-CccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHH
Q 043263          144 SKEE-FLQMV----DKN------ELLEYALVYGDYK-GIPK----KQIREYM---------AKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       144 ~~~~-~~~~i----~~~------~~~~~~~~~~~~~-~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iar  198 (286)
                      +... .+..+    +..      ...++........ ....    ..+.+.+         ......+++|+.|++.+|+
T Consensus        71 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (241)
T PRK10895         71 PLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR  150 (241)
T ss_pred             CHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence            2211 11111    111      1122221111111 0111    1122221         2223456788999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.+.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~------~~~~d~v~~l~~G~i  215 (241)
T PRK10895        151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET------LAVCERAYIVSQGHL  215 (241)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH------HHhcCEEEEEeCCeE
Confidence            99988888877      7776676666666542  234667778988764      478999999998875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=7.2e-20  Score=162.65  Aligned_cols=176  Identities=17%  Similarity=0.098  Sum_probs=117.0

Q ss_pred             HHhHhHHHHhc------------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-
Q 043263           68 ELLRSLEASLG------------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-  134 (286)
Q Consensus        68 i~~~~v~~~~~------------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-  134 (286)
                      ++++||++.|+            .+++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+ 
T Consensus         6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~IvG~sGsGKSTLl~~l~gl~~------------p~~G~i   72 (327)
T PRK11308          6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLER-GKTLAVVGESGCGKSTLARLLTMIET------------PTGGEL   72 (327)
T ss_pred             EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHHcCCC------------CCCcEE
Confidence            56777787774            168899999998 99999999999999999999999986            55665 


Q ss_pred             -cCCcceeeeCHHHHHH---H---hhccc---hhhhheeccc------cc-CccH----HHHHHHH----------hcCC
Q 043263          135 -VNGKDYFFVSKEEFLQ---M---VDKNE---LLEYALVYGD------YK-GIPK----KQIREYM----------AKGY  183 (286)
Q Consensus       135 -~~g~~~~~~~~~~~~~---~---i~~~~---~~~~~~~~~~------~~-~~~~----~~i~~~~----------~~g~  183 (286)
                       ++|.++...+..++..   .   +.++.   +.....+..+      .+ +...    +.+.+.+          ....
T Consensus        73 ~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p  152 (327)
T PRK11308         73 YYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP  152 (327)
T ss_pred             EECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC
Confidence             6676665444333221   1   12221   1000000000      00 1111    1122222          2233


Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      ..+++|++||+.+|++++.+|+++|+      ||..+...+.+.|.+.   .+.+...++|++...      ...||+|+
T Consensus       153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~------~~~adrv~  226 (327)
T PRK11308        153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV------EHIADEVM  226 (327)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEE
Confidence            46778899999999999989888888      7777677777766542   244778889999885      36799999


Q ss_pred             ECCCCCHH
Q 043263          255 VNAEGKLD  262 (286)
Q Consensus       255 v~~~G~i~  262 (286)
                      ++.+|++.
T Consensus       227 vm~~G~iv  234 (327)
T PRK11308        227 VMYLGRCV  234 (327)
T ss_pred             EEECCEEE
Confidence            99988763

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=6e-20  Score=158.05  Aligned_cols=169  Identities=17%  Similarity=0.157  Sum_probs=107.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee--
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF--  141 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~--  141 (286)
                      ++++|+++.|+.  .+.++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++.  
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~   68 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLES-GELLVVLGPSGCGKTTLLNLIAGFVP------------YQHGSITLDGKPVEGP   68 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCCC
Confidence            356788888865  68999999998 99999999999999999999999986            44444  3443321  


Q ss_pred             -----eeCHHHHHHHhhccchhhhheecccccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          142 -----FVSKEEFLQMVDKNELLEYALVYGDYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       142 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                           ++.+..  .........++........+...    +.+.+.         .......+++|++|++.+|++++.+
T Consensus        69 ~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~  146 (255)
T PRK11248         69 GAERGVVFQNE--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAAN  146 (255)
T ss_pred             CCcEEEEeCCC--ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence                 111000  00011111222111000011111    112222         2223345778999999999999988


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      |+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|++++
T Consensus       147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~------~~~~d~i~~l~  203 (255)
T PRK11248        147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA------VFMATELVLLS  203 (255)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEe
Confidence            888888      7777777777766653   244677779988865      36799998886

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.76  E-value=1e-19  Score=155.29  Aligned_cols=176  Identities=18%  Similarity=0.206  Sum_probs=113.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   68 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQ-GEVVVIIGPSGSGKSTLLRCINKLEE------------ITSGDLIVDGLKVNDP   68 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECCcC
Confidence            346778888864  68999999998 99999999999999999999999986            55555  556544321


Q ss_pred             C--HHHHHHHh----hcc------chhhhheecc-cccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          144 S--KEEFLQMV----DKN------ELLEYALVYG-DYKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       144 ~--~~~~~~~i----~~~------~~~~~~~~~~-~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      .  ...++..+    ++.      ...++..+.. ...+...    +.+.++         +......+++|++|++.+|
T Consensus        69 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la  148 (240)
T PRK09493         69 KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA  148 (240)
T ss_pred             ChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence            1  11111111    111      1111111100 0011111    112222         2233345677899999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++.
T Consensus       149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i~  215 (240)
T PRK09493        149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA------EKVASRLIFIDKGRIA  215 (240)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence            999988888887      7777677777766543  234667778988874      3679999999988763

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.76  E-value=1.6e-19  Score=152.31  Aligned_cols=172  Identities=14%  Similarity=0.217  Sum_probs=112.3

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ++++|+++.|+.    .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++.
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~   69 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKP-GEKVGIVGRTGSGKSSLLLALFRLVE------------LSSGSILIDGVDIS   69 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCCEEEECCEEhH
Confidence            456788888852    78999999998 99999999999999999999999986            55565  4555443


Q ss_pred             eeCHHHHHHHh---hcc------chhhhheecccccCccHHHHHH---------HHh-----------cCCcEEEEeCHH
Q 043263          142 FVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIRE---------YMA-----------KGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~---------~~~-----------~g~~~v~~~~~q  192 (286)
                      ..+...++..+   .+.      ...++...+..   ...+.+.+         .+.           .....+.+|++|
T Consensus        70 ~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q  146 (221)
T cd03244          70 KIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ  146 (221)
T ss_pred             hCCHHHHhhhEEEECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence            22222222211   111      11222211111   11111111         111           233456678999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++.++++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...       ..||+++++++|++.
T Consensus       147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~i~~l~~g~~~  216 (221)
T cd03244         147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI-------IDSDRILVLDKGRVV  216 (221)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------hhCCEEEEEECCeEE
Confidence            99999999988888887      77777777777776542 23556668887763       458999999988763

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.4e-19  Score=155.10  Aligned_cols=178  Identities=16%  Similarity=0.130  Sum_probs=115.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++...         .|..|+  ++|+++...
T Consensus         3 ~~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---------~~~~G~i~~~g~~i~~~   72 (246)
T PRK14269          3 AKTTNLNLFYGKKQALFDINMQIEQ-NKITALIGASGCGKSTFLRCFNRMNDKI---------AKIDGLVEIEGKDVKNQ   72 (246)
T ss_pred             eeeeeeEEEECCEeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCC---------CCCceEEEECCEecccC
Confidence            567889999975  79999999998 9999999999999999999999986310         034555  566655433


Q ss_pred             CHHHHHHHh---hcc------chhhhheecccccCc------cHHHHHHHH-------------hcCCcEEEEeCHHHHH
Q 043263          144 SKEEFLQMV---DKN------ELLEYALVYGDYKGI------PKKQIREYM-------------AKGYDIVLRVDIQGAR  195 (286)
Q Consensus       144 ~~~~~~~~i---~~~------~~~~~~~~~~~~~~~------~~~~i~~~~-------------~~g~~~v~~~~~q~v~  195 (286)
                      +...++..+   .+.      ...++..+....++.      ..+.+.+.+             ......+.+|++|+++
T Consensus        73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  152 (246)
T PRK14269         73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC  152 (246)
T ss_pred             CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHH
Confidence            322322211   111      112221111111110      011112221             2223456778999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++.+|+++|+      ||+.+...+.+.|.+. .+.+...++|+++..      ...||+|+++++|++
T Consensus       153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i  219 (246)
T PRK14269        153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG------KRVADYTAFFHLGEL  219 (246)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HhhCcEEEEEECCEE
Confidence            99999988888888      7776677777766653 234667778988875      468999999998875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.75  E-value=9.3e-20  Score=157.16  Aligned_cols=177  Identities=18%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      +.++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~   70 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSEGSIVVNGQTIN   70 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEcc
Confidence            45788999999975  79999999998 99999999999999999999999986            55555  5555432


Q ss_pred             ee----------C---HHHHHHHh----hccc------hhhhheecc-cccCccH----HHHHHHH----------hcCC
Q 043263          142 FV----------S---KEEFLQMV----DKNE------LLEYALVYG-DYKGIPK----KQIREYM----------AKGY  183 (286)
Q Consensus       142 ~~----------~---~~~~~~~i----~~~~------~~~~~~~~~-~~~~~~~----~~i~~~~----------~~g~  183 (286)
                      ..          +   ...++..+    ++..      ..++..+.. ..+....    +.+.+.+          ....
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  150 (257)
T PRK10619         71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP  150 (257)
T ss_pred             cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence            10          1   11222211    1111      122211100 0011111    1222221          2233


Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEE
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVV  255 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv  255 (286)
                      ..+++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+|++
T Consensus       151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~------~~~~d~i~~  224 (257)
T PRK10619        151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA------RHVSSHVIF  224 (257)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEE
Confidence            45667899999999999988888888      7777777777766543  234677778988874      357999999


Q ss_pred             CCCCCH
Q 043263          256 NAEGKL  261 (286)
Q Consensus       256 ~~~G~i  261 (286)
                      +++|++
T Consensus       225 l~~G~i  230 (257)
T PRK10619        225 LHQGKI  230 (257)
T ss_pred             EECCEE
Confidence            998865

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.6e-19  Score=157.47  Aligned_cols=174  Identities=18%  Similarity=0.181  Sum_probs=115.1

Q ss_pred             HHhHhHHHHhcc--------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           68 ELLRSLEASLGH--------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        68 i~~~~v~~~~~~--------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      ++++|++++|+.        +|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|
T Consensus         5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~i~g   71 (280)
T PRK13633          5 IKCKNVSYKYESNEESTEKLALDDVNLEVKK-GEFLVILGRNGSGKSTIAKHMNALLI------------PSEGKVYVDG   71 (280)
T ss_pred             EEEeeeEEEcCCCCCCCCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECC
Confidence            567888898852        78999999998 99999999999999999999999987            55555  555


Q ss_pred             cceeeeC-HHHHHHHh---hccc---h----hhhheecc-cccCccH----HHHHHH---------HhcCCcEEEEeCHH
Q 043263          138 KDYFFVS-KEEFLQMV---DKNE---L----LEYALVYG-DYKGIPK----KQIREY---------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       138 ~~~~~~~-~~~~~~~i---~~~~---~----~~~~~~~~-~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q  192 (286)
                      .++.... ...++..+   .+..   +    +.+...++ ...+...    +.+.++         .......+++|++|
T Consensus        72 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q  151 (280)
T PRK13633         72 LDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ  151 (280)
T ss_pred             EeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence            5442211 11112111   1111   1    11111111 1112221    122222         23334566788999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..       ..||+++++++|++
T Consensus       152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~-------~~~d~v~~l~~G~i  222 (280)
T PRK13633        152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-------VEADRIIVMDSGKV  222 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH-------hcCCEEEEEECCEE
Confidence            99999999988888888      7887777777777653   244677779988874       34999999988865

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.1e-19  Score=158.22  Aligned_cols=174  Identities=13%  Similarity=0.116  Sum_probs=114.7

Q ss_pred             HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           68 ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        68 i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +.++||++.|+.     .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~i   71 (277)
T PRK13642          5 LEVENLVFKYEKESDVNQLNGVSFSITK-GEWVSIIGQNGSGKSTTARLIDGLFE------------EFEGKVKIDGELL   71 (277)
T ss_pred             EEEEEEEEEcCCCCcCeeeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCCEEEECCEEC
Confidence            567888888862     68999999998 99999999999999999999999987            55565  556554


Q ss_pred             eeeCHHHHHHHh---hcc--------chhhhheecccccCccHHH----HHHH---------HhcCCcEEEEeCHHHHHH
Q 043263          141 FFVSKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKKQ----IREY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~~----i~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      ...+...++..+   .+.        ...++..+.....+...+.    +..+         .......+++|+.|++.+
T Consensus        72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  151 (277)
T PRK13642         72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAV  151 (277)
T ss_pred             CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence            322222222211   111        1122221100001112111    1222         223334567789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..       ..||+|+++++|++
T Consensus       152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~-------~~~d~i~~l~~G~i  218 (277)
T PRK13642        152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA-------ASSDRILVMKAGEI  218 (277)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-------HhCCEEEEEECCEE
Confidence            9999988888888      7777677777766543   244777789988884       46999999998865

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.75  E-value=8.4e-20  Score=143.61  Aligned_cols=132  Identities=18%  Similarity=0.143  Sum_probs=99.8

Q ss_pred             hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++|+++.|+.  .++++++.+.+ |++++|+|+|||||||++++|+|+++            |..|+  ++|....    
T Consensus         3 ~~~l~~~~~~~~~l~~~~~~~~~-Ge~~~i~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~~~~~i----   65 (144)
T cd03221           3 LENLSKTYGGKLLLKDISLTINP-GDRIGLVGRNGAGKSTLLKLIAGELE------------PDEGIVTWGSTVKI----   65 (144)
T ss_pred             EEEEEEEECCceEEEeeEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCC------------CCceEEEECCeEEE----
Confidence            4567777764  68888999888 99999999999999999999999986            66665  3442000    


Q ss_pred             HHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHH
Q 043263          146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALV  219 (286)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~  219 (286)
                                .++.         .                +.+|+.|++.+||+++.+|+++|+      ||+.+...+.
T Consensus        66 ----------~~~~---------~----------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~  110 (144)
T cd03221          66 ----------GYFE---------Q----------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE  110 (144)
T ss_pred             ----------EEEc---------c----------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence                      0000         0                677899999999999988888888      7776677777


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          220 ERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       220 ~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      +.+.+.. .+...++|+++..      ...||+++++++|+
T Consensus       111 ~~l~~~~-~til~~th~~~~~------~~~~d~v~~l~~g~  144 (144)
T cd03221         111 EALKEYP-GTVILVSHDRYFL------DQVATKIIELEDGK  144 (144)
T ss_pred             HHHHHcC-CEEEEEECCHHHH------HHhCCEEEEEeCCC
Confidence            7776653 3666778887764      36799999998874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=8.6e-20  Score=159.73  Aligned_cols=175  Identities=11%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      +.++||++.|+.       +++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~iiG~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~   69 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEE-GSFVALVGHTGSGKSTLMQHFNALLK------------PSSGTITIAGY   69 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence            456788888862       68999999998 99999999999999999999999987            55665  5665


Q ss_pred             ceeee----CHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHH----------HhcCCcEEEEe
Q 043263          139 DYFFV----SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREY----------MAKGYDIVLRV  189 (286)
Q Consensus       139 ~~~~~----~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~----------~~~g~~~v~~~  189 (286)
                      ++...    +....+..+   .+.        ...++..+....+....+    .+.++          .......+++|
T Consensus        70 ~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  149 (287)
T PRK13641         70 HITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGG  149 (287)
T ss_pred             ECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHH
Confidence            54221    111111111   111        111211110001111111    12222          12233456788


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~------~~~~d~v~~l~~G~i  223 (287)
T PRK13641        150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDV------AEYADDVLVLEHGKL  223 (287)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            99999999999988888877      7776666776666653  234667779988875      368999999988864

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.75  E-value=1.5e-19  Score=152.38  Aligned_cols=172  Identities=19%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ++++|+++.|+.    .++++++.+.+ |++++|+||||||||||+++|+|+.+            |..|+  ++|.++.
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~-G~~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~   69 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRA-GEKVAIIGRVGSGKSTLLKLLAGLYK------------PTSGSVLLDGTDIR   69 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCeEEECCEEhH
Confidence            456778888853    68899999998 99999999999999999999999976            55565  4555432


Q ss_pred             eeCHHHHHHHh---hcc------chhhhheecccccCccHHHHHHH---------Hhc-----------CCcEEEEeCHH
Q 043263          142 FVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIREY---------MAK-----------GYDIVLRVDIQ  192 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~~-----------g~~~v~~~~~q  192 (286)
                      ..+...++..+   .+.      ...++.......  ...+.+.+.         +..           ....+++|++|
T Consensus        70 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q  147 (220)
T cd03245          70 QLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ  147 (220)
T ss_pred             HCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence            22222222211   111      112221111000  111111111         111           11357788999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+... .+...++|+++.       ...||+++++++|++
T Consensus       148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-------~~~~d~v~~l~~g~i  216 (220)
T cd03245         148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL-------LDLVDRIIVMDSGRI  216 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-------HHhCCEEEEEeCCeE
Confidence            99999999988888888      777777788787776432 355666887765       357999999998875

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.75  E-value=3.3e-20  Score=156.63  Aligned_cols=174  Identities=16%  Similarity=0.133  Sum_probs=109.1

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee-----
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF-----  141 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~-----  141 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++...+.+.          ++|.++.     
T Consensus         2 ~l~~v~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----------~~~~~~~~~~~~   70 (223)
T TIGR03740         2 ETKNLSKRFGKQTAVNNISLTVPK-NSVYGLLGPNGAGKSTLLKMITGILRPTSGEII----------FDGHPWTRKDLH   70 (223)
T ss_pred             EEEeEEEEECCEEEEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEeccccccc
Confidence            35677777764  68889999888 999999999999999999999999873333332          3333211     


Q ss_pred             ---eeCHHHHHHHhhccchhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263          142 ---FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF  209 (286)
Q Consensus       142 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il  209 (286)
                         +.....  .........++.......++...+.+.+.         .......+++|+.|++.+|++++.+|+++++
T Consensus        71 ~~~~~~q~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll  148 (223)
T TIGR03740        71 KIGSLIESP--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL  148 (223)
T ss_pred             cEEEEcCCC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence               110000  00000111111111000111112222222         1222344677899999999999988888888


Q ss_pred             ------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 ------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 ------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                            ||+.+.+.+.+.|.+..  +.+...++|+++..      ...||+++++++|++
T Consensus       149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~g~i  202 (223)
T TIGR03740       149 DEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV------QQLADHIGIISEGVL  202 (223)
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HHhcCEEEEEeCCEE
Confidence                  88877777777766532  33667778988874      368999999988875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.75  E-value=1.4e-19  Score=155.11  Aligned_cols=175  Identities=18%  Similarity=0.197  Sum_probs=112.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC-----CCC--cCCc
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR-----PGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~-----~G~--~~g~  138 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.     .|+  ++|.
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~~~~~~G~i~~~g~   68 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPK-NQVTALIGPSGCGKSTLLRSLNRMND------------LVPGVRIEGKVLFDGQ   68 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCcCCCCceEEEECCE
Confidence            356788888875  78999999998 99999999999999999999999986            43     555  5565


Q ss_pred             ceeee--CHHHHHHHh---hcc------chhhhheecccccC-ccH----HHHHHH-------------HhcCCcEEEEe
Q 043263          139 DYFFV--SKEEFLQMV---DKN------ELLEYALVYGDYKG-IPK----KQIREY-------------MAKGYDIVLRV  189 (286)
Q Consensus       139 ~~~~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~-~~~----~~i~~~-------------~~~g~~~v~~~  189 (286)
                      ++...  ....++..+   .+.      ...++..+.....+ ...    +.+.++             +......+++|
T Consensus        69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  148 (247)
T TIGR00972        69 DIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG  148 (247)
T ss_pred             EccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence            44321  111112111   111      11122111000111 111    111211             22233456778


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i  221 (247)
T TIGR00972       149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQA------ARISDRTAFFYDGEL  221 (247)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99999999999988887777      66666667766666532 23667779988874      368999999998875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.75  E-value=1.5e-19  Score=153.22  Aligned_cols=173  Identities=20%  Similarity=0.282  Sum_probs=113.3

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++|+++.|+.   .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~   69 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKP-GETVAIVGPTGAGKTTLINLLMRFYD------------PQKGQILIDGIDIRD   69 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCEeHHH
Confidence            456788888852   68899999998 99999999999999999999999986            55665  55554432


Q ss_pred             eCHHHHHHHh---hcc------chhhhheecccccCccHHHHHH---------HH-----------hcCCcEEEEeCHHH
Q 043263          143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIRE---------YM-----------AKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~~---------~~-----------~~g~~~v~~~~~q~  193 (286)
                      .+...++..+   .+.      ...++.......  .....+..         .+           ......+.+|++|+
T Consensus        70 ~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r  147 (229)
T cd03254          70 ISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL  147 (229)
T ss_pred             cCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence            2222222211   111      122222111110  11111111         11           11224567789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +.+|++++.+|+++|+      ||+.+.+.+.+.|.+.. +.+...++|.+...       ..||+++++++|++.
T Consensus       148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~i~~l~~g~~~  216 (229)
T cd03254         148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-------KNADKILVLDDGKII  216 (229)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-------hhCCEEEEEeCCeEE
Confidence            9999999988888888      77777777777776542 33666678877663       459999999999763

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=7e-19  Score=148.07  Aligned_cols=153  Identities=23%  Similarity=0.191  Sum_probs=111.3

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHhhccch
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMVDKNEL  157 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i~~~~~  157 (286)
                      +++++++.+.+ |+++||+|.|||||||+.++|.+++.            |+.|+  ++|.++..++.++....+.  .+
T Consensus        28 avd~Vsf~i~~-ge~~glVGESG~GKSTlgr~i~~L~~------------pt~G~i~f~g~~i~~~~~~~~~~~v~--el   92 (268)
T COG4608          28 AVDGVSFSIKE-GETLGLVGESGCGKSTLGRLILGLEE------------PTSGEILFEGKDITKLSKEERRERVL--EL   92 (268)
T ss_pred             EecceeEEEcC-CCEEEEEecCCCCHHHHHHHHHcCcC------------CCCceEEEcCcchhhcchhHHHHHHH--HH
Confidence            56777888887 99999999999999999999999987            78887  7888876665433222210  01


Q ss_pred             hhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHH---HHhcCC
Q 043263          158 LEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERL---VERKTE  228 (286)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl---~~r~~~  228 (286)
                      ++   ..    +...    +.+.+-..-++|||+||+.+||++..+|.++|+      ||......+..-|   ++..+.
T Consensus        93 L~---~V----gl~~----~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l  161 (268)
T COG4608          93 LE---KV----GLPE----EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL  161 (268)
T ss_pred             HH---Hh----CCCH----HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC
Confidence            11   11    1111    123344466889999999999999989999988      7776555555444   344455


Q ss_pred             CHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          229 NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       229 t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      +...|+|+++..      ...||+|.|+..|++.|.
T Consensus       162 t~lFIsHDL~vv------~~isdri~VMy~G~iVE~  191 (268)
T COG4608         162 TYLFISHDLSVV------RYISDRIAVMYLGKIVEI  191 (268)
T ss_pred             eEEEEEEEHHhh------hhhcccEEEEecCceeEe
Confidence            788889999986      478999999999987553

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.4e-19  Score=158.04  Aligned_cols=175  Identities=14%  Similarity=0.095  Sum_probs=111.5

Q ss_pred             HHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      +.++||++.|+.       +++++++.+.+ |++++|+||||||||||+++|+|++.            |.+|+  ++|.
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~   69 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIED-GSYTAFIGHTGSGKSTIMQLLNGLHV------------PTQGSVRVDDT   69 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCE
Confidence            446777777752       68888999988 99999999999999999999999986            55555  5555


Q ss_pred             ceeee----CHHHHHHHh---hcc--------chhhhheecccccCccHH----HHHHHH----------hcCCcEEEEe
Q 043263          139 DYFFV----SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPKK----QIREYM----------AKGYDIVLRV  189 (286)
Q Consensus       139 ~~~~~----~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~~----~i~~~~----------~~g~~~v~~~  189 (286)
                      ++...    ....++..+   .+.        ...++..+....++...+    .+.+++          ......+++|
T Consensus        70 ~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  149 (280)
T PRK13649         70 LITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG  149 (280)
T ss_pred             EccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence            43221    111222111   111        112221111011111111    112221          2222346678


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i  223 (280)
T PRK13649        150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV------ANYADFVYVLEKGKL  223 (280)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH------HHhCCEEEEEECCEE
Confidence            99999999999988888888      7777677777766653  234667779988764      367999999988865

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.2e-19  Score=155.11  Aligned_cols=175  Identities=19%  Similarity=0.220  Sum_probs=112.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         3 l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   69 (242)
T PRK11124          3 IQLNGINCFYGAHQALFDITLDCPQ-GETLVLLGPSGAGKSSLLRVLNLLEM------------PRSGTLNIAGNHFDFS   69 (242)
T ss_pred             EEEEeeEEEECCeeeEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEecccc
Confidence            456788888864  78999999998 99999999999999999999999986            55665  566554210


Q ss_pred             ------CHHHHHHHh----hccc------hhhhheec-ccccCccH----HHHHHH---------HhcCCcEEEEeCHHH
Q 043263          144 ------SKEEFLQMV----DKNE------LLEYALVY-GDYKGIPK----KQIREY---------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       144 ------~~~~~~~~i----~~~~------~~~~~~~~-~~~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~  193 (286)
                            .....+..+    ++..      ..++.... ....+...    +.+.+.         +......+++|++|+
T Consensus        70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  149 (242)
T PRK11124         70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQR  149 (242)
T ss_pred             cccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence                  011111111    1111      11111110 00011111    112222         222334566789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+++++++|++
T Consensus       150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~------~~~~d~i~~l~~g~i  219 (242)
T PRK11124        150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA------RKTASRVVYMENGHI  219 (242)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence            9999999988888887      7776677777766642  234667778988774      357999999988865

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=9.5e-20  Score=155.27  Aligned_cols=175  Identities=15%  Similarity=0.132  Sum_probs=113.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         6 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~~   72 (237)
T PRK11614          6 LSFDKVSAHYGKIQALHEVSLHINQ-GEIVTLIGANGAGKTTLLGTLCGDPR------------ATSGRIVFDGKDITDW   72 (237)
T ss_pred             EEEEeEEEeeCCceeeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCceEEECCEecCCC
Confidence            667888998875  79999999998 99999999999999999999999986            55565  556554333


Q ss_pred             CHHH-HHHHh----hcc------chhhhheecccccC--ccHHHHHH----------HHhcCCcEEEEeCHHHHHHHHHH
Q 043263          144 SKEE-FLQMV----DKN------ELLEYALVYGDYKG--IPKKQIRE----------YMAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       144 ~~~~-~~~~i----~~~------~~~~~~~~~~~~~~--~~~~~i~~----------~~~~g~~~v~~~~~q~v~iaral  200 (286)
                      +... .+..+    ++.      ...++.........  ...+.+.+          ........+++|++|++.+|+++
T Consensus        73 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al  152 (237)
T PRK11614         73 QTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL  152 (237)
T ss_pred             CHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence            3221 11111    111      11111111000000  00111111          11223345678899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  215 (237)
T PRK11614        153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA------LKLADRGYVLENGHV  215 (237)
T ss_pred             HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH------HhhCCEEEEEeCCEE
Confidence            988888888      7777677776666542  234667778988764      478999999988865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.75  E-value=3e-19  Score=151.88  Aligned_cols=172  Identities=18%  Similarity=0.245  Sum_probs=111.3

Q ss_pred             HhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           69 LLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++|+++.|+.    .+.++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   68 (234)
T cd03251           2 EFKNVTFRYPGDGPPVLRDISLDIPA-GETVALVGPSGSGKSTLVNLIPRFYD------------VDSGRILIDGHDVRD   68 (234)
T ss_pred             EEEEEEEEeCCCCccceeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccc------------CCCCEEEECCEEhhh
Confidence            34566666642    57888888887 99999999999999999999999986            66666  56655433


Q ss_pred             eCHHHHHHHh---hcc------chhhhheecccccCccHHHHH---------HHH-----------hcCCcEEEEeCHHH
Q 043263          143 VSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIR---------EYM-----------AKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~---------~~~-----------~~g~~~v~~~~~q~  193 (286)
                      .+...++..+   .+.      ...++.......  .....+.         +.+           ......+.+|++|+
T Consensus        69 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr  146 (234)
T cd03251          69 YTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR  146 (234)
T ss_pred             CCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence            3333322221   111      112222111110  1111111         111           11223566789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...       ..||+|+++++|++.
T Consensus       147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~v~~l~~G~i~  215 (234)
T cd03251         147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI-------ENADRIVVLEDGKIV  215 (234)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-------hhCCEEEEecCCeEe
Confidence            9999999988888888      77777777777776542 33566678888763       449999999999763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.3e-19  Score=154.10  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=114.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .|..|+  ++|.++...
T Consensus         4 l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~i~~~   75 (250)
T PRK14247          4 IEIRDLKVSFGQVEVLDGVNLEIPD-NTITALMGPSGSGKSTLLRVFNRLIELYPE-------ARVSGEVYLDGQDIFKM   75 (250)
T ss_pred             EEEEeeEEEECCeeeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCC-------CCCceEEEECCEECCcC
Confidence            567888888875  78999999998 999999999999999999999998741000       013454  455544322


Q ss_pred             CHHHHHHHh---hcc-------chhhhheecccccCc--c----HHHHHHHH-------------hcCCcEEEEeCHHHH
Q 043263          144 SKEEFLQMV---DKN-------ELLEYALVYGDYKGI--P----KKQIREYM-------------AKGYDIVLRVDIQGA  194 (286)
Q Consensus       144 ~~~~~~~~i---~~~-------~~~~~~~~~~~~~~~--~----~~~i~~~~-------------~~g~~~v~~~~~q~v  194 (286)
                      +...++..+   .+.       ...++..+.......  .    .+.+.+++             ......+++|++|++
T Consensus        76 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv  155 (250)
T PRK14247         76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL  155 (250)
T ss_pred             CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence            222222211   111       112221110000000  1    11122222             222345667899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  223 (250)
T PRK14247        156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQA------ARISDYVAFLYKGQI  223 (250)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEECCeE
Confidence            999999988888888      78777777777776532 34666778988874      367999999998876

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=8.8e-20  Score=156.97  Aligned_cols=180  Identities=18%  Similarity=0.167  Sum_probs=113.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee--
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF--  141 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~--  141 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .+..|+  ++|.++.  
T Consensus         5 l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-------~~~~G~i~~~g~~i~~~   76 (253)
T PRK14267          5 IETVNLRVYYGSNHVIKGVDLKIPQ-NGVFALMGPSGCGKSTLLRTFNRLLELNEE-------ARVEGEVRLFGRNIYSP   76 (253)
T ss_pred             EEEEeEEEEeCCeeeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCcccC-------CCCceEEEECCEEcccc
Confidence            567888998875  79999999998 999999999999999999999998751100       012555  5565543  


Q ss_pred             eeCHHHHHHHh----hcc------chhhhheecccccCc--cH----HHHHHHHh-------------cCCcEEEEeCHH
Q 043263          142 FVSKEEFLQMV----DKN------ELLEYALVYGDYKGI--PK----KQIREYMA-------------KGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~--~~----~~i~~~~~-------------~g~~~v~~~~~q  192 (286)
                      ..+...++..+    ++.      ...++........+.  ..    +.+.++++             .....+++|++|
T Consensus        77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  156 (253)
T PRK14267         77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ  156 (253)
T ss_pred             ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence            11122222211    111      111221110000010  11    11222222             223346678999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  226 (253)
T PRK14267        157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQA------ARVSDYVAFLYLGKL  226 (253)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH------HhhCCEEEEEECCEE
Confidence            99999999988888888      77777777777766532 23667778988874      367999999998875

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.75  E-value=1.9e-19  Score=145.08  Aligned_cols=150  Identities=21%  Similarity=0.178  Sum_probs=102.9

Q ss_pred             HhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc-ceee
Q 043263           69 LLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK-DYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~-~~~~  142 (286)
                      +++|+++.|+.   .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|. .+.+
T Consensus         2 ~~~~~~~~~~~~~~~l~~i~l~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~~~~~i~~   68 (166)
T cd03223           2 ELENLSLATPDGRVLLKDLSFEIKP-GDRLLITGPSGTGKSSLFRALAGLWP------------WGSGRIGMPEGEDLLF   68 (166)
T ss_pred             EEEEEEEEcCCCCeeeecCeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCCceEEE
Confidence            35667777742   68899999998 99999999999999999999999986            55665  3331 1212


Q ss_pred             eCHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHH
Q 043263          143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEM  216 (286)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~  216 (286)
                      +.++..   +......++..+.                 ....+++|++|++.+||+++.+|+++|+      ||+.+..
T Consensus        69 ~~q~~~---~~~~tv~~nl~~~-----------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~  128 (166)
T cd03223          69 LPQRPY---LPLGTLREQLIYP-----------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED  128 (166)
T ss_pred             ECCCCc---cccccHHHHhhcc-----------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHH
Confidence            111100   0000111111000                 2345778999999999999988888888      7777777


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          217 ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       217 ~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      .+.+.+.+.+ .+...++|+...       ...||++++++++
T Consensus       129 ~l~~~l~~~~-~tiiivsh~~~~-------~~~~d~i~~l~~~  163 (166)
T cd03223         129 RLYQLLKELG-ITVISVGHRPSL-------WKFHDRVLDLDGE  163 (166)
T ss_pred             HHHHHHHHhC-CEEEEEeCChhH-------HhhCCEEEEEcCC
Confidence            7777777653 467777888754       3579999988764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.75  E-value=5.1e-19  Score=159.35  Aligned_cols=172  Identities=17%  Similarity=0.206  Sum_probs=115.7

Q ss_pred             HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc----ceee
Q 043263           71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK----DYFF  142 (286)
Q Consensus        71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~----~~~~  142 (286)
                      .++.+.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.    ++..
T Consensus        28 ~~~~~~~g~~~~l~~vsf~i~~-Gei~~I~G~nGsGKSTLlr~L~Gl~~------------p~~G~I~idG~~~~~~i~~   94 (382)
T TIGR03415        28 EEILDETGLVVGVANASLDIEE-GEICVLMGLSGSGKSSLLRAVNGLNP------------VSRGSVLVKDGDGSIDVAN   94 (382)
T ss_pred             HHHHHhhCCEEEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCEeccccccc
Confidence            466778886  78999999998 99999999999999999999999987            66676  5664    3333


Q ss_pred             eCHHHHHHH----h----hccchhhhheeccc------ccCccHH----HHHHHH---------hcCCcEEEEeCHHHHH
Q 043263          143 VSKEEFLQM----V----DKNELLEYALVYGD------YKGIPKK----QIREYM---------AKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~~~~~~----i----~~~~~~~~~~~~~~------~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~  195 (286)
                      .+...++..    +    ++..+..+..+..|      ..+....    .+.+++         ......+++|+.|++.
T Consensus        95 ~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~  174 (382)
T TIGR03415        95 CDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVG  174 (382)
T ss_pred             CCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence            333333221    1    12122221122222      1122221    222222         2222346678999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++.+|+++|+      ||+.+...+.+.|.+.   .+.|...++|+++..      .+.||+|+++++|++
T Consensus       175 LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~------~~l~DrI~vl~~G~i  243 (382)
T TIGR03415       175 LARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA------LKIGNRIAIMEGGRI  243 (382)
T ss_pred             HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            99999988888888      7777677776666542   244778889999885      478999999998865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.75  E-value=7.7e-20  Score=153.12  Aligned_cols=174  Identities=15%  Similarity=0.126  Sum_probs=110.2

Q ss_pred             HhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           69 LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        69 ~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      .++|+++.|+....++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+..
T Consensus         2 ~~~~l~~~~~~~~~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~gl~~------------~~~G~i~~~g~~~~~~~~~   68 (211)
T cd03298           2 RLDKIRFSYGEQPMHFDLTFAQ-GEITAIVGPSGSGKSTLLNLIAGFET------------PQSGRVLINGVDVTAAPPA   68 (211)
T ss_pred             EEEeEEEEeCCEecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEEcCcCCHh
Confidence            4567777776533478888887 99999999999999999999999986            55555  455443221111


Q ss_pred             H--HHHHhhc------cchhhhheeccccc-C---ccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          147 E--FLQMVDK------NELLEYALVYGDYK-G---IPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       147 ~--~~~~i~~------~~~~~~~~~~~~~~-~---~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      .  +....++      ....++..+..... .   ...+.+.+.+         ......+++|++|++.+|++++.+|+
T Consensus        69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~  148 (211)
T cd03298          69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP  148 (211)
T ss_pred             HccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            0  0000011      11122221110000 0   0112222222         22334577889999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i  207 (211)
T cd03298         149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA------KRLAQRVVFLDNGRI  207 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HhhhCEEEEEECCEE
Confidence            8888      7777777777766643   234677779988874      367999999999875

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.75  E-value=1.7e-19  Score=154.32  Aligned_cols=174  Identities=16%  Similarity=0.198  Sum_probs=110.4

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCcceee
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|++  .            |.+|+  ++|.++..
T Consensus         2 ~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------------~~~G~i~~~g~~~~~   68 (243)
T TIGR01978         2 KIKDLHVSVEDKEILKGVNLTVKK-GEIHAIMGPNGSGKSTLSKTIAGHPSYE------------VTSGTILFKGQDLLE   68 (243)
T ss_pred             eEeeEEEEECCEEEEeccceEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCC------------CCcceEEECCEecCC
Confidence            46788888875  78999999998 9999999999999999999999984  4            44454  45544332


Q ss_pred             eCHHHHHH----Hh-hccch------hhhheec-cccc------Ccc----HHHHHHHH----------hcCCc-EEEEe
Q 043263          143 VSKEEFLQ----MV-DKNEL------LEYALVY-GDYK------GIP----KKQIREYM----------AKGYD-IVLRV  189 (286)
Q Consensus       143 ~~~~~~~~----~i-~~~~~------~~~~~~~-~~~~------~~~----~~~i~~~~----------~~g~~-~v~~~  189 (286)
                      .+......    .+ ++..+      .++.... ....      ...    .+.+.+.+          ..... .+++|
T Consensus        69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G  148 (243)
T TIGR01978        69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGG  148 (243)
T ss_pred             CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHH
Confidence            22211110    00 11111      1110000 0000      001    11122211          11222 37789


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCC-CcEEEECCCCC
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKN-FDYVVVNAEGK  260 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~G~  260 (286)
                      ++|++.+|++++.+|+++|+      ||+.+.+.+.+.|.+..  +.+...++|+++..      ... ||+++++++|+
T Consensus       149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~------~~~~~d~i~~l~~G~  222 (243)
T TIGR01978       149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL------NYIKPDYVHVLLDGR  222 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH------HhhcCCeEEEEeCCE
Confidence            99999999999988888888      77777777777776542  34667778988874      245 89999999887


Q ss_pred             H
Q 043263          261 L  261 (286)
Q Consensus       261 i  261 (286)
                      +
T Consensus       223 i  223 (243)
T TIGR01978       223 I  223 (243)
T ss_pred             E
Confidence            5

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=9.5e-20  Score=159.71  Aligned_cols=176  Identities=14%  Similarity=0.104  Sum_probs=112.0

Q ss_pred             HHHhHhHHHHhcc-------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           67 IELLRSLEASLGH-------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        67 ~i~~~~v~~~~~~-------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      .++++|+++.|+.       +++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g   72 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKK-NKVTCVIGTTGSGKSTMIQLTNGLII------------SETGQTIVGD   72 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECC
Confidence            4678888888863       68899999998 99999999999999999999999986            44554  444


Q ss_pred             cceee----e-CHHHHHHHh---hcc--------chhhhheecccccCccH----HHHHHHH----------hcCCcEEE
Q 043263          138 KDYFF----V-SKEEFLQMV---DKN--------ELLEYALVYGDYKGIPK----KQIREYM----------AKGYDIVL  187 (286)
Q Consensus       138 ~~~~~----~-~~~~~~~~i---~~~--------~~~~~~~~~~~~~~~~~----~~i~~~~----------~~g~~~v~  187 (286)
                      .++..    . +...++..+   .+.        ...++..+.....+...    +.+.+.+          ......++
T Consensus        73 ~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS  152 (289)
T PRK13645         73 YAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELS  152 (289)
T ss_pred             EEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCC
Confidence            43310    0 111111111   111        11111111000011111    1111121          12234566


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++
T Consensus       153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~------~~~~d~i~~l~~  226 (289)
T PRK13645        153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV------LRIADEVIVMHE  226 (289)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEEC
Confidence            7899999999999988888888      7777677776666543   234677789988864      368999999988


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       227 G~i  229 (289)
T PRK13645        227 GKV  229 (289)
T ss_pred             CEE
Confidence            865

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.74  E-value=1.1e-19  Score=153.68  Aligned_cols=176  Identities=17%  Similarity=0.199  Sum_probs=111.9

Q ss_pred             hHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           66 KIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ..++++|+++.|+.     .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.
T Consensus        10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~   76 (226)
T cd03248          10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHP-GEVTALVGPSGSGKSTVVALLENFYQ------------PQGGQVLLDGK   76 (226)
T ss_pred             ceEEEEEEEEEeCCCCCCccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCcEEEECCC
Confidence            34778889998862     68999999998 99999999999999999999999986            55565  4555


Q ss_pred             ceeeeCHHHHHHHh----hcc-----chhhhheecccccCc---cH-------HH--------HHHHHhcCCcEEEEeCH
Q 043263          139 DYFFVSKEEFLQMV----DKN-----ELLEYALVYGDYKGI---PK-------KQ--------IREYMAKGYDIVLRVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~---~~-------~~--------i~~~~~~g~~~v~~~~~  191 (286)
                      ++...+...++..+    ++.     ...++..+.......   ..       +.        +...+......+++|++
T Consensus        77 ~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~  156 (226)
T cd03248          77 PISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK  156 (226)
T ss_pred             chHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence            44322222222111    111     112221110000000   00       00        01112222344567899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.+.+.+.. +.+...++|+++..       ..||+|+++++|++
T Consensus       157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-------~~~d~i~~l~~g~i  226 (226)
T cd03248         157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV-------ERADQILVLDGGRI  226 (226)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH-------HhCCEEEEecCCcC
Confidence            999999999988888877      77776777777776532 23566678887763       45999999988753

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.6e-19  Score=160.48  Aligned_cols=182  Identities=17%  Similarity=0.153  Sum_probs=118.9

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..+.++|+++.|..    .|+++++.+.+ |++++|+|+||||||||+++|+|+......       .|..|+  ++|.+
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~-Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~-------~p~~G~I~idG~~  150 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKR-NKVTAFIGPSGCGKSTFLRNLNQLNDLIEG-------TSHEGEIYFLGTN  150 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEE
Confidence            46889999999952    79999999998 999999999999999999999998641100       023555  56666


Q ss_pred             eeee--CHHHHHHHh---hcc------chhhhheecccccCccHHH-----HHH-------------HHhcCCcEEEEeC
Q 043263          140 YFFV--SKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQ-----IRE-------------YMAKGYDIVLRVD  190 (286)
Q Consensus       140 ~~~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~-----i~~-------------~~~~g~~~v~~~~  190 (286)
                      +...  ....++..+   .+.      ...++..+.....+...+.     +..             .+.+....+++|+
T Consensus       151 i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq  230 (329)
T PRK14257        151 TRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ  230 (329)
T ss_pred             ccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence            5321  112222211   121      1122222111111111111     111             1234445677889


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++.+||+++.+|+++|+      ||+.+...+.+.|.+.. +.|...++|++...      ...||+|+++++|++
T Consensus       231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i------~~~~Driivl~~G~i  302 (329)
T PRK14257        231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA------QRISDETVFFYQGWI  302 (329)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999999989998888      77777777767666532 34677789999985      356999999998875

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.74  E-value=1.8e-19  Score=156.15  Aligned_cols=176  Identities=17%  Similarity=0.134  Sum_probs=112.4

Q ss_pred             HHHhHhHHHHhc-----------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-
Q 043263           67 IELLRSLEASLG-----------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-  134 (286)
Q Consensus        67 ~i~~~~v~~~~~-----------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-  134 (286)
                      .++++||++.|+           ..+.++++.+.+ |++++|+||||||||||+++|+|+++            |.+|+ 
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~Gl~~------------p~~G~i   70 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLRE-GQTLAIIGENGSGKSTLAKMLAGMIE------------PTSGEL   70 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecC-CCEEEEEcCCCCCHHHHHHHHhCCCC------------CCCCEE
Confidence            367888888884           168899999998 99999999999999999999999987            55555 


Q ss_pred             -cCCcceeeeCHHHHHHHh---hccc---h------hhhheeccccc-Ccc----HHHHHHHHh----------cCCcEE
Q 043263          135 -VNGKDYFFVSKEEFLQMV---DKNE---L------LEYALVYGDYK-GIP----KKQIREYMA----------KGYDIV  186 (286)
Q Consensus       135 -~~g~~~~~~~~~~~~~~i---~~~~---~------~~~~~~~~~~~-~~~----~~~i~~~~~----------~g~~~v  186 (286)
                       ++|.++........+..+   .+..   +      .++.......+ ...    .+.+.+.++          .....+
T Consensus        71 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  150 (267)
T PRK15112         71 LIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML  150 (267)
T ss_pred             EECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhc
Confidence             455443211111111111   1110   0      00100000000 011    111222221          112456


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||++++++
T Consensus       151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~------~~~~d~i~~l~  224 (267)
T PRK15112        151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM------KHISDQVLVMH  224 (267)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH------HHhcCEEEEEE
Confidence            77899999999999988888888      7777777777766653   234677779988774      35799999998


Q ss_pred             CCCH
Q 043263          258 EGKL  261 (286)
Q Consensus       258 ~G~i  261 (286)
                      +|++
T Consensus       225 ~G~i  228 (267)
T PRK15112        225 QGEV  228 (267)
T ss_pred             CCEE
Confidence            8865

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=3.4e-19  Score=153.41  Aligned_cols=181  Identities=15%  Similarity=0.115  Sum_probs=115.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .+..|+  ++|.++..
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~   78 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILK-NSITALIGPSGCGKSTFLRTLNRMNDLVEG-------IKIEGNVIYEGKNIYS   78 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcC-CCEEEEECCCCCCHHHHHHHHhccccCCcC-------CCCceEEEECCEeccc
Confidence            4778999999975  78999999998 999999999999999999999998752100       012454  45554321


Q ss_pred             e--CHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263          143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~  193 (286)
                      .  ....++..+   .+.      ...++..+....++. .    .+.+.+.             .......+++|++|+
T Consensus        79 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr  158 (254)
T PRK14273         79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR  158 (254)
T ss_pred             ccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence            1  111122111   111      111211110000110 1    1112221             233334577889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+||+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~------~~~~d~i~~l~~G~i  227 (254)
T PRK14273        159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA------GRISDRTAFFLNGCI  227 (254)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999989988888      77777777777776542 23666778988875      367999999988876

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.74  E-value=2.7e-19  Score=152.58  Aligned_cols=171  Identities=19%  Similarity=0.238  Sum_probs=109.6

Q ss_pred             HhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           69 LLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        69 ~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      +++|+++.|+.     .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  ++|.++.
T Consensus         2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~   68 (238)
T cd03249           2 EFKNVSFRYPSRPDVPILKGLSLTIPP-GKTVALVGSSGCGKSTVVSLLERFYD------------PTSGEILLDGVDIR   68 (238)
T ss_pred             eEEEEEEecCCCCCccceeceEEEecC-CCEEEEEeCCCCCHHHHHHHHhccCC------------CCCCEEEECCEehh
Confidence            35667777742     67888888887 99999999999999999999999986            55665  5565443


Q ss_pred             eeCHHHHHHHh---hcc------chhhhheecccccCccHHHHH---------H---HHh--------cCCcEEEEeCHH
Q 043263          142 FVSKEEFLQMV---DKN------ELLEYALVYGDYKGIPKKQIR---------E---YMA--------KGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~~i~---------~---~~~--------~g~~~v~~~~~q  192 (286)
                      ..+....+..+   .+.      .+.++..+.....  ..+.+.         +   .++        .....+++|++|
T Consensus        69 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q  146 (238)
T cd03249          69 DLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ  146 (238)
T ss_pred             hcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence            22222222111   111      1122211110000  111111         1   111        112356678999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..       ..||+|+++++|++
T Consensus       147 rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-------~~~d~v~~l~~G~i  215 (238)
T cd03249         147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-------RNADLIAVLQNGQV  215 (238)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-------hhCCEEEEEECCEE
Confidence            99999999988888887      77777777777776543 33556668887763       47999999999876

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.74  E-value=1.6e-18  Score=134.27  Aligned_cols=177  Identities=19%  Similarity=0.221  Sum_probs=119.0

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |.++++++.||.  .|.++++.-+. |+.++++||||+|||||++.|.-+--            |++|+  +.|..+.+.
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~-getlvllgpsgagkssllr~lnlle~------------p~sg~l~ia~~~fd~s   69 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPE-GETLVLLGPSGAGKSSLLRVLNLLEM------------PRSGTLNIAGNHFDFS   69 (242)
T ss_pred             eEEcccccccccchheeeeeecCCC-CCEEEEECCCCCchHHHHHHHHHHhC------------CCCCeEEecccccccc
Confidence            667899999997  79999999998 99999999999999999999875543            77887  445433221


Q ss_pred             --C-HHHHHHH-------hhccchhhhheeccc-------ccCccHHHHHH----H---------HhcCCcEEEEeCHHH
Q 043263          144 --S-KEEFLQM-------VDKNELLEYALVYGD-------YKGIPKKQIRE----Y---------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       144 --~-~~~~~~~-------i~~~~~~~~~~~~~~-------~~~~~~~~i~~----~---------~~~g~~~v~~~~~q~  193 (286)
                        . ......+       +++..+..+..+..|       ..+.++++...    .         ...-.--+.+|+.||
T Consensus        70 ~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqr  149 (242)
T COG4161          70 KTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQR  149 (242)
T ss_pred             cCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhh
Confidence              1 1222222       233333333333333       23444332211    1         111223567899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERKT--ENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      +++||+++..|.+++|      |||.-...+..-+++..+  .|-.+++|..+.+      .+.|.+|+.+++|.+.|
T Consensus       150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va------~k~as~vvyme~g~ive  221 (242)
T COG4161         150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA------RKTASRVVYMENGHIVE  221 (242)
T ss_pred             HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH------HhhhhheEeeecCeeEe
Confidence            9999999999999998      777655566666666543  2445568877765      47788999999998755

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.74  E-value=2.8e-19  Score=155.10  Aligned_cols=175  Identities=13%  Similarity=0.168  Sum_probs=113.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC--------CCC--c
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR--------PGE--V  135 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~--------~G~--~  135 (286)
                      ++++|+++.|+.  .|.++++.+.+ |++++|+|+||||||||+++|+|+++            |.        .|+  +
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~laG~~~------------p~~~~~~~~~~G~i~~   68 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEP-GRVTALLGRNGAGKSTLLKALAGDLT------------GGGAPRGARVTGDVTL   68 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CcccccccCCceEEEE
Confidence            456788888875  78999999998 99999999999999999999999976            43        455  5


Q ss_pred             CCcceeeeCHHHHHHHh---hcc-------chhhhheeccccc----C-c---cHHHHHHHH---------hcCCcEEEE
Q 043263          136 NGKDYFFVSKEEFLQMV---DKN-------ELLEYALVYGDYK----G-I---PKKQIREYM---------AKGYDIVLR  188 (286)
Q Consensus       136 ~g~~~~~~~~~~~~~~i---~~~-------~~~~~~~~~~~~~----~-~---~~~~i~~~~---------~~g~~~v~~  188 (286)
                      +|.++...+...++..+   .+.       ...++........    . .   ..+.+.+.+         ......+++
T Consensus        69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  148 (272)
T PRK13547         69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSG  148 (272)
T ss_pred             CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCH
Confidence            66655433333333221   111       1122221110000    0 0   111222222         223345677


Q ss_pred             eCHHHHHHHHHHhC---------CCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          189 VDIQGARTLRRILG---------DSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       189 ~~~q~v~iaral~~---------~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      |++|++.++++++.         +|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...|
T Consensus       149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~------~~~~  222 (272)
T PRK13547        149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA------ARHA  222 (272)
T ss_pred             HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhC
Confidence            89999999999994         7777777      7776677777666542   234667778988874      3679


Q ss_pred             cEEEECCCCCH
Q 043263          251 DYVVVNAEGKL  261 (286)
Q Consensus       251 d~viv~~~G~i  261 (286)
                      |+++++++|++
T Consensus       223 d~i~~l~~G~i  233 (272)
T PRK13547        223 DRIAMLADGAI  233 (272)
T ss_pred             CEEEEEECCeE
Confidence            99999998875

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=6.9e-19  Score=140.24  Aligned_cols=174  Identities=20%  Similarity=0.181  Sum_probs=109.8

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~  143 (286)
                      +.+++++.+|++    .+.++++.+.+ |+.++++|||||||||++++++|+..+..+.+.          ++|..+.- 
T Consensus         4 l~~~~~sl~y~g~~~~~le~vsL~ia~-ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~----------l~~r~i~g-   71 (259)
T COG4525           4 LNVSHLSLSYEGKPRSALEDVSLTIAS-GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ----------LNGRRIEG-   71 (259)
T ss_pred             eehhheEEecCCcchhhhhccceeecC-CCEEEEEcCCCccHHHHHHHHhcCcCcccceEE----------ECCEeccC-
Confidence            345677778865    68999999998 999999999999999999999999873333333          33432211 


Q ss_pred             CHHHHHHHhhccchhhhheeccc------ccCccHHHHHHH----H--------hcC-CcEEEEeCHHHHHHHHHHhCCC
Q 043263          144 SKEEFLQMVDKNELLEYALVYGD------YKGIPKKQIREY----M--------AKG-YDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~i~~~----~--------~~g-~~~v~~~~~q~v~iaral~~~~  204 (286)
                      +..+-.-.++++.++.+....+|      +.++.+.+-.+.    +        ... ..-+++|.+||+.+||++.-+|
T Consensus        72 PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP  151 (259)
T COG4525          72 PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEP  151 (259)
T ss_pred             CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCc
Confidence            00110111122333333222222      344444322221    1        111 2345688999999999999788


Q ss_pred             cEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          205 AVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      +++++      ||+-+.+.+++-|..   +.+.....|+|.++.+      +-.++++++++.|
T Consensus       152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA------lflatrLvvlsp~  209 (259)
T COG4525         152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA------LFLATRLVVLSPG  209 (259)
T ss_pred             ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH------HhhhheeEEecCC
Confidence            77776      666666666655543   2344666779988887      5678999988754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.74  E-value=9.1e-20  Score=152.89  Aligned_cols=172  Identities=13%  Similarity=0.130  Sum_probs=109.8

Q ss_pred             HhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           69 LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        69 ~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      +++||++.|+..+.++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++....  
T Consensus         2 ~~~~l~~~~~~~~~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~--   66 (213)
T TIGR01277         2 ALDKVRYEYEHLPMEFDLNVAD-GEIVAIMGPSGAGKSTLLNLIAGFIE------------PASGSIKVNDQSHTGLA--   66 (213)
T ss_pred             eEEeeeEEeCCcceeeEEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEcccCC--
Confidence            3567888887667788888888 99999999999999999999999986            45554  4454432111  


Q ss_pred             HHHHHh----hc------cchhhhheec--cccc--CccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          147 EFLQMV----DK------NELLEYALVY--GDYK--GIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       147 ~~~~~i----~~------~~~~~~~~~~--~~~~--~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                      ..+..+    ++      ....++..+.  ....  ....+.+.++         .......+++|++|++.+|++++.+
T Consensus        67 ~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  146 (213)
T TIGR01277        67 PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRP  146 (213)
T ss_pred             hhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            001100    11      1112221110  0000  0011122222         2333456778999999999999988


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+++++++|++
T Consensus       147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~------~~~~d~v~~l~~g~i  207 (213)
T TIGR01277       147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA------RAIASQIAVVSQGKI  207 (213)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhcCeEEEEECCeE
Confidence            888777      7777677776666543   234677778888764      367999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.74  E-value=3e-19  Score=154.67  Aligned_cols=175  Identities=15%  Similarity=0.145  Sum_probs=111.0

Q ss_pred             HHhHhHHHHhc---------c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--
Q 043263           68 ELLRSLEASLG---------H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--  134 (286)
Q Consensus        68 i~~~~v~~~~~---------~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--  134 (286)
                      +.++||++.|+         .  +++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~   69 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEE-GETVGLLGRSGCGKSTLARLLLGLEK------------PAQGTVS   69 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEE
Confidence            44567777773         1  68899999998 99999999999999999999999986            66665  


Q ss_pred             cCCcceeeeCHHH---HHHHh---hccc---hhhhheeccc-------ccCcc----HHHHHHHH----------hcCCc
Q 043263          135 VNGKDYFFVSKEE---FLQMV---DKNE---LLEYALVYGD-------YKGIP----KKQIREYM----------AKGYD  184 (286)
Q Consensus       135 ~~g~~~~~~~~~~---~~~~i---~~~~---~~~~~~~~~~-------~~~~~----~~~i~~~~----------~~g~~  184 (286)
                      ++|.++...+...   ++..+   .+..   +........+       .....    .+.+.+++          .....
T Consensus        70 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  149 (265)
T TIGR02769        70 FRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPR  149 (265)
T ss_pred             ECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence            5665544333221   11111   1111   1111111110       11111    11222222          22223


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEE
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVV  255 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv  255 (286)
                      .+++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||++++
T Consensus       150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~------~~~~d~i~~  223 (265)
T TIGR02769       150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV------QSFCQRVAV  223 (265)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHHhcEEEE
Confidence            4667899999999999988887777      6666566666666542   244777789988875      357999999


Q ss_pred             CCCCCH
Q 043263          256 NAEGKL  261 (286)
Q Consensus       256 ~~~G~i  261 (286)
                      +++|++
T Consensus       224 l~~G~i  229 (265)
T TIGR02769       224 MDKGQI  229 (265)
T ss_pred             EeCCEE
Confidence            988864

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.74  E-value=2.6e-19  Score=148.67  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=110.5

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCcceee
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+.  .            |..|+  ++|.++..
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~------------p~~G~i~~~g~~~~~   68 (200)
T cd03217           2 EIKDLHVSVGGKEILKGVNLTIKK-GEVHALMGPNGSGKSTLAKTIMGHPKYE------------VTEGEILFKGEDITD   68 (200)
T ss_pred             eEEEEEEEeCCEEeeeccceEECC-CcEEEEECCCCCCHHHHHHHHhCCCcCC------------CCccEEEECCEECCc
Confidence            35677777764  78899999998 9999999999999999999999983  4            66676  67776544


Q ss_pred             eCHHHHHHHhhccchhhhh-eecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263          143 VSKEEFLQMVDKNELLEYA-LVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE  215 (286)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~  215 (286)
                      .+.......  .-.++... ..+   .+....   +.+..-...+.+|++|++.++++++.+|+++|+      ||+.+.
T Consensus        69 ~~~~~~~~~--~i~~v~q~~~~~---~~~~~~---~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  140 (200)
T cd03217          69 LPPEERARL--GIFLAFQYPPEI---PGVKNA---DFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL  140 (200)
T ss_pred             CCHHHHhhC--cEEEeecChhhc---cCccHH---HHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            333322110  00111000 000   111221   112222235778999999999999988888777      666667


Q ss_pred             HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCH
Q 043263          216 MALVERLVER--KTENREELLVRIATAREEVQHVK-NFDYVVVNAEGKL  261 (286)
Q Consensus       216 ~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i  261 (286)
                      ..+.+.|.+.  .+.+...++|+++..      .. .||+++++++|++
T Consensus       141 ~~l~~~L~~~~~~~~tiii~sh~~~~~------~~~~~d~i~~l~~G~i  183 (200)
T cd03217         141 RLVAEVINKLREEGKSVLIITHYQRLL------DYIKPDRVHVLYDGRI  183 (200)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCHHHH------HHhhCCEEEEEECCEE
Confidence            7777766643  233667778988763      24 6999999998866

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.73  E-value=8.6e-19  Score=146.18  Aligned_cols=166  Identities=17%  Similarity=0.188  Sum_probs=103.5

Q ss_pred             HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      +||++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++......
T Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~~   68 (206)
T TIGR03608         2 KNISKKFGDKIILDDLNLTIEK-GKMYAIIGESGSGKSTLLNIIGLLEK------------FDSGQVYLNGKETPPLNSK   68 (206)
T ss_pred             cceEEEECCEEEEeceEEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEEccccchh
Confidence            567777764  78899999998 99999999999999999999999986            55665  566554322211


Q ss_pred             ----HHHHHh----hc------cchhhhheecccccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263          147 ----EFLQMV----DK------NELLEYALVYGDYKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       147 ----~~~~~i----~~------~~~~~~~~~~~~~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~iara  199 (286)
                          ..+..+    +.      ....++..+.....+..    .+.+.+.+         ......+++|++|++.+|++
T Consensus        69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara  148 (206)
T TIGR03608        69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA  148 (206)
T ss_pred             hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence                111111    11      11122111110111111    11222222         22234466789999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      ++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++..       ...||+++++
T Consensus       149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-------~~~~d~i~~l  206 (206)
T TIGR03608       149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-------AKQADRVIEL  206 (206)
T ss_pred             HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HhhcCEEEeC
Confidence            9988888888      7777777777766653  23356667887764       3568888763

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.73  E-value=4.7e-19  Score=150.87  Aligned_cols=172  Identities=17%  Similarity=0.223  Sum_probs=111.1

Q ss_pred             HhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           69 LLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        69 ~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +++|+++.|+ .  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 ~~~~l~~~~~~~~~~l~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~v~~~g~~~~~~   68 (236)
T cd03253           2 EFENVTFAYDPGRPVLKDVSFTIPA-GKKVAIVGPSGSGKSTILRLLFRFYD------------VSSGSILIDGQDIREV   68 (236)
T ss_pred             EEEEEEEEeCCCCceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccC------------CCCCEEEECCEEhhhC
Confidence            3567777774 2  68899999998 99999999999999999999999986            55665  556544332


Q ss_pred             CHHHHHHHh----hcc-----chhhhheecccccCccHHHHHH---------H---Hh--------cCCcEEEEeCHHHH
Q 043263          144 SKEEFLQMV----DKN-----ELLEYALVYGDYKGIPKKQIRE---------Y---MA--------KGYDIVLRVDIQGA  194 (286)
Q Consensus       144 ~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~~~~~i~~---------~---~~--------~g~~~v~~~~~q~v  194 (286)
                      +...++..+    ++.     ...++..+. .. ......+..         .   ++        .....+++|++|++
T Consensus        69 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl  146 (236)
T cd03253          69 TLDSLRRAIGVVPQDTVLFNDTIGYNIRYG-RP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV  146 (236)
T ss_pred             CHHHHHhhEEEECCCChhhcchHHHHHhhc-CC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence            332222211    111     112221111 00 011111111         1   11        12235677899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..       ..||+++++++|++.
T Consensus       147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-------~~~d~~~~l~~g~i~  214 (236)
T cd03253         147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-------VNADKIIVLKDGRIV  214 (236)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-------HhCCEEEEEECCEEE
Confidence            999999988888888      77777777777776532 33666678888763       459999999988763

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.73  E-value=1.7e-19  Score=155.99  Aligned_cols=178  Identities=15%  Similarity=0.149  Sum_probs=113.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|++....         +..|+  ++|.++...
T Consensus         5 l~~~nl~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---------~~~G~i~~~g~~~~~~   74 (262)
T PRK09984          5 IRVEKLAKTFNQHQALHAVDLNIHH-GEMVALLGPSGSGKSTLLRHLSGLITGDK---------SAGSHIELLGRTVQRE   74 (262)
T ss_pred             EEEeeEEEEeCCeEEEecceEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCCCC---------CCceEEEECCEecccc
Confidence            667889998875  79999999998 99999999999999999999999975110         01244  455443221


Q ss_pred             C-----HHHHHHHh----hcc------chhhhheecc------------cccCccHHHHHHH---------HhcCCcEEE
Q 043263          144 S-----KEEFLQMV----DKN------ELLEYALVYG------------DYKGIPKKQIREY---------MAKGYDIVL  187 (286)
Q Consensus       144 ~-----~~~~~~~i----~~~------~~~~~~~~~~------------~~~~~~~~~i~~~---------~~~g~~~v~  187 (286)
                      .     ...++..+    +..      ...++..+..            .......+.+.++         .......++
T Consensus        75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  154 (262)
T PRK09984         75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLS  154 (262)
T ss_pred             cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccC
Confidence            1     11111111    111      1111111100            0000001112222         233445577


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +|++|++.++++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++
T Consensus       155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~------~~~~d~i~~l~~  228 (262)
T PRK09984        155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA------LRYCERIVALRQ  228 (262)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEEC
Confidence            8999999999999988888888      7777777777766653   234677788988864      367999999988


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       229 g~i  231 (262)
T PRK09984        229 GHV  231 (262)
T ss_pred             CEE
Confidence            865

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=3.7e-19  Score=153.51  Aligned_cols=181  Identities=18%  Similarity=0.184  Sum_probs=113.9

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|+++....       .|..|+  ++|.++..
T Consensus        12 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-------~~~~G~i~~~g~~i~~   83 (258)
T PRK14268         12 QIKVENLNLWYGEKQALKNVSMQIPK-NSVTALIGPSGCGKSTFIRCLNRMNDLIKN-------CRIEGKVSIEGEDIYE   83 (258)
T ss_pred             eEEEeeeEEEeCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCcccC-------CCcceEEEECCEEccc
Confidence            4778999999975  79999999998 999999999999999999999998741000       013454  45544321


Q ss_pred             eC--HHHHHHHh---hcc------chhhhheecccccCccHH----HHHHHH-------------hcCCcEEEEeCHHHH
Q 043263          143 VS--KEEFLQMV---DKN------ELLEYALVYGDYKGIPKK----QIREYM-------------AKGYDIVLRVDIQGA  194 (286)
Q Consensus       143 ~~--~~~~~~~i---~~~------~~~~~~~~~~~~~~~~~~----~i~~~~-------------~~g~~~v~~~~~q~v  194 (286)
                      ..  ...++..+   .+.      ...++..+....++...+    .+.+++             ......+++|++|++
T Consensus        84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv  163 (258)
T PRK14268         84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL  163 (258)
T ss_pred             ccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence            11  11112111   111      111211110001111111    122222             222345667899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...      ...||+|+++++|++
T Consensus       164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i  231 (258)
T PRK14268        164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA------ARISDYTGFFLMGEL  231 (258)
T ss_pred             HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            999999988888887      77777777777776532 33666778988874      367999999998875

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=2.1e-19  Score=156.33  Aligned_cols=174  Identities=18%  Similarity=0.184  Sum_probs=112.0

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +.++||++.|+.   .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~~~~   68 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEK-GEMVALLGPNGAGKSTLFLHFNGILK------------PTSGEVLIKGEPIKY   68 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCEECcc
Confidence            346788888852   78999999998 99999999999999999999999986            55555  55554421


Q ss_pred             --eCHHHHHHHh---hcc--------chhhhheeccc-ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHH
Q 043263          143 --VSKEEFLQMV---DKN--------ELLEYALVYGD-YKGIPK----KQIREYM---------AKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 --~~~~~~~~~i---~~~--------~~~~~~~~~~~-~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~  195 (286)
                        .+....+..+   .+.        ...++.. ++. ..+...    +.+.+++         ......+++|+.|++.
T Consensus        69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~-~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~  147 (275)
T PRK13639         69 DKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA-FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVA  147 (275)
T ss_pred             ccchHHHHHhheEEEeeChhhhhccccHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHH
Confidence              0111111111   111        1112111 111 011111    1122222         2223456678999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|.+
T Consensus       148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~------~~~~d~i~~l~~G~i  215 (275)
T PRK13639        148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV------PVYADKVYVMSDGKI  215 (275)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99999988888888      7777677776666643  234777789998875      357999999987754

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.73  E-value=3.4e-19  Score=150.15  Aligned_cols=172  Identities=17%  Similarity=0.206  Sum_probs=109.8

Q ss_pred             HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +++|+++.|+.      .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++
T Consensus         3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~-G~~~~I~G~nGsGKStLl~~l~G~~~------------~~~G~i~~~g~~~   69 (220)
T TIGR02982         3 SIRNLNHYYGHGSLRKQVLFDINLEINP-GEIVILTGPSGSGKTTLLTLIGGLRS------------VQEGSLKVLGQEL   69 (220)
T ss_pred             EEEEEEEEccCCCcceeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCEEh
Confidence            34566666642      58888888887 99999999999999999999999986            55665  566654


Q ss_pred             eeeCHHH---HHHHh----hc------cchhhhheeccccc-CccH----HHHHHH---------HhcCCcEEEEeCHHH
Q 043263          141 FFVSKEE---FLQMV----DK------NELLEYALVYGDYK-GIPK----KQIREY---------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~---~~~~i----~~------~~~~~~~~~~~~~~-~~~~----~~i~~~---------~~~g~~~v~~~~~q~  193 (286)
                      ...+...   ++..+    ++      ....++..+....+ ....    +.+.++         .......+.+|++|+
T Consensus        70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr  149 (220)
T TIGR02982        70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR  149 (220)
T ss_pred             HhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence            3222211   11111    11      11122211111111 1111    112222         222334566789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      +.++++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++.       ...||+|+++++|+
T Consensus       150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-------~~~~d~v~~l~~g~  218 (220)
T TIGR02982       150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-------LDVADRIVHMEDGK  218 (220)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-------HhhCCEEEEEECCE
Confidence            9999999988888888      7777776776666543   23477777898764       46899999998875

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.73  E-value=5.4e-19  Score=152.38  Aligned_cols=176  Identities=14%  Similarity=0.151  Sum_probs=115.9

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ...+.++|+++.|+.    .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~i~g~   83 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKP-GQKVGICGRTGSGKSSLSLAFFRMVD------------IFDGKIVIDGI   83 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEEcC-CCEEEEECCCCCCHHHHHHHHHcccC------------CCCCeEEECCE
Confidence            345788999999863    68999999998 99999999999999999999999986            66666  6676


Q ss_pred             ceeeeCHHHHHHHh---hcc-chhhhheeccccc---CccHHHHH---------HHH---hcCC--------cEEEEeCH
Q 043263          139 DYFFVSKEEFLQMV---DKN-ELLEYALVYGDYK---GIPKKQIR---------EYM---AKGY--------DIVLRVDI  191 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~-~~~~~~~~~~~~~---~~~~~~i~---------~~~---~~g~--------~~v~~~~~  191 (286)
                      ++...+...++..+   .+. .+.. ..+..+..   ......+.         +.+   +.+.        ..+.+|++
T Consensus        84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~  162 (257)
T cd03288          84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR  162 (257)
T ss_pred             EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence            55433433333322   111 1111 11111110   00111111         111   1122        24556889


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+.+.+.+.+.+.. +.+...++|+++..       ..||+|+++++|++
T Consensus       163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-------~~~dri~~l~~G~i  232 (257)
T cd03288         163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTI-------LDADLVLVLSRGIL  232 (257)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHH-------HhCCEEEEEECCEE
Confidence            999999999988888888      67766667766666532 33666678988874       35999999998876

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=1.3e-19  Score=153.99  Aligned_cols=175  Identities=13%  Similarity=0.122  Sum_probs=111.2

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++++||++.|+....++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++.....
T Consensus         2 l~~~~l~~~~~~~~~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~~~~~   68 (232)
T PRK10771          2 LKLTDITWLYHHLPMRFDLTVER-GERVAILGPSGAGKSTLLNLIAGFLT------------PASGSLTLNGQDHTTTPP   68 (232)
T ss_pred             eEEEEEEEEECCccceeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCeecCcCCh
Confidence            35678888887644578888887 99999999999999999999999987            44554  44543321111


Q ss_pred             HH--HHHHhhc------cchhhhheec--cccc-C-ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          146 EE--FLQMVDK------NELLEYALVY--GDYK-G-IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       146 ~~--~~~~i~~------~~~~~~~~~~--~~~~-~-~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      ..  +....++      ....++..+.  .... . ...+.+.+.         +......+++|++|++.+|++++.+|
T Consensus        69 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  148 (232)
T PRK10771         69 SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ  148 (232)
T ss_pred             hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            00  0000011      1122222110  0000 0 011112222         23344567789999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          205 AVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++|++
T Consensus       149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~g~i  208 (232)
T PRK10771        149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA------ARIAPRSLVVADGRI  208 (232)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            88888      7777777777766643   234667778988864      367999999988865

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4.6e-19  Score=153.61  Aligned_cols=182  Identities=17%  Similarity=0.150  Sum_probs=115.9

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..++++||++.|+.  +|+++++.+.+ |++++|+|+||||||||+++|+|+++...       ..|..|+  ++|.++.
T Consensus        18 ~~l~~~nl~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         18 IKMRARDVSVFYGEKQALFDVDLDIPE-KTVTAFIGPSGCGKSTFLRCLNRMNDTID-------GCRVTGKITLDGEDIY   89 (267)
T ss_pred             ceEEEEeEEEEECCEEEEEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccccc-------CCCCceEEEECCEECc
Confidence            35889999999976  79999999998 99999999999999999999999874100       0024454  4555442


Q ss_pred             ee--CHHHHHHHh----hcc-----chhhhheecccccCc--c----HHHHHHHH-------------hcCCcEEEEeCH
Q 043263          142 FV--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI--P----KKQIREYM-------------AKGYDIVLRVDI  191 (286)
Q Consensus       142 ~~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~--~----~~~i~~~~-------------~~g~~~v~~~~~  191 (286)
                      ..  ....++..+    +..     ...++..+....++.  .    .+.+.+++             ......+++|++
T Consensus        90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  169 (267)
T PRK14235         90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ  169 (267)
T ss_pred             ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence            11  111222211    111     112221110000111  1    11122221             222345677899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~------~~~~d~v~~l~~G~i  240 (267)
T PRK14235        170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQA------ARVSQRTAFFHLGNL  240 (267)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHH------HhhCCEEEEEECCEE
Confidence            999999999988888888      77776777777776542 33666778988875      367999999998876

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.73  E-value=3e-19  Score=158.87  Aligned_cols=180  Identities=15%  Similarity=0.105  Sum_probs=118.3

Q ss_pred             HHHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .++++||++.|+    .  +++++++.+.+ |++++|+|+||||||||+++|+|+++...         ...|+  ++|.
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~---------~~sG~I~~~G~   81 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRA-GETLGIVGESGSGKSQTAFALMGLLAANG---------RIGGSATFNGR   81 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcC-CCEEEEECCCCchHHHHHHHHHcCCCCCC---------CCCeEEEECCE
Confidence            477889988884    1  68999999998 99999999999999999999999986110         02555  6777


Q ss_pred             ceeeeCHHHHHHH-------hhccc---hhhhheecc------ccc-CccHH----HHHHHH------------hcCCcE
Q 043263          139 DYFFVSKEEFLQM-------VDKNE---LLEYALVYG------DYK-GIPKK----QIREYM------------AKGYDI  185 (286)
Q Consensus       139 ~~~~~~~~~~~~~-------i~~~~---~~~~~~~~~------~~~-~~~~~----~i~~~~------------~~g~~~  185 (286)
                      ++...+..+++..       +.|+.   +.....+..      ..+ +...+    .+.+.+            ......
T Consensus        82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~  161 (330)
T PRK09473         82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHE  161 (330)
T ss_pred             ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCccc
Confidence            7655555444321       12221   100000000      000 11111    112222            122345


Q ss_pred             EEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          186 VLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       186 v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      +++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+   ..+.+...++|++...      ...||+|+++
T Consensus       162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~------~~~~Dri~vm  235 (330)
T PRK09473        162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV------AGICDKVLVM  235 (330)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH------HHhCCEEEEE
Confidence            678899999999999989988888      777767766665543   2244778889999875      3679999999


Q ss_pred             CCCCHH
Q 043263          257 AEGKLD  262 (286)
Q Consensus       257 ~~G~i~  262 (286)
                      .+|++.
T Consensus       236 ~~G~iv  241 (330)
T PRK09473        236 YAGRTM  241 (330)
T ss_pred             ECCEEE
Confidence            988763

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.73  E-value=8.9e-19  Score=164.43  Aligned_cols=175  Identities=13%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|+++            |.+|+  ++|.++...
T Consensus         4 l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~G~~~------------p~~G~i~~~~~~~~~~   70 (490)
T PRK10938          4 LQISQGTFRLSDTKTLQLPSLTLNA-GDSWAFVGANGSGKSALARALAGELP------------LLSGERQSQFSHITRL   70 (490)
T ss_pred             EEEEeEEEEcCCeeecccceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCceEEECCcccccC
Confidence            677899999975  79999999998 99999999999999999999999986            66666  445544322


Q ss_pred             CHHHHHHHh---hcc-ch--hh------hheeccccc-C-ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHH
Q 043263          144 SKEEFLQMV---DKN-EL--LE------YALVYGDYK-G-IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       144 ~~~~~~~~i---~~~-~~--~~------~~~~~~~~~-~-~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral  200 (286)
                      +...++..+   .+. .+  +.      ......+.. . ...+.+.+.         +......+++|++||+++|+++
T Consensus        71 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  150 (490)
T PRK10938         71 SFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL  150 (490)
T ss_pred             CHHHHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence            322222211   111 10  00      011111110 0 011122222         2333456778999999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~------~~~~d~v~~l~~G~i  213 (490)
T PRK10938        151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEI------PDFVQFAGVLADCTL  213 (490)
T ss_pred             HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HhhCCEEEEEECCEE
Confidence            988888888      7777777777766553  233667778988875      367999999998865

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.73  E-value=4e-19  Score=150.94  Aligned_cols=176  Identities=16%  Similarity=0.159  Sum_probs=110.3

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHH
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE  146 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~  146 (286)
                      .++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|.++...+.+.          ++|.++......
T Consensus         2 ~~~~l~~~~~~~~il~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~----------~~g~~~~~~~~~   70 (232)
T cd03300           2 ELENVSKFYGGFVALDGVSLDIKE-GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL----------LDGKDITNLPPH   70 (232)
T ss_pred             EEEeEEEEeCCeeeeccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----------ECCEEcCcCChh
Confidence            35677888864  78999999998 999999999999999999999999873333332          344333211110


Q ss_pred             H--HH------HHhhccchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          147 E--FL------QMVDKNELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       147 ~--~~------~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      .  +.      ..+......++..+....++..    .+.+..+         +......+.+|++|++.++++++.+|+
T Consensus        71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (232)
T cd03300          71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK  150 (232)
T ss_pred             hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            0  00      0000001111111100011111    1122222         222234466789999999999999998


Q ss_pred             EEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+++++++|++
T Consensus       151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~------~~~~d~i~~l~~G~~  209 (232)
T cd03300         151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA------LTMSDRIAVMNKGKI  209 (232)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhcCEEEEEECCEE
Confidence            8888      7777777777766543   244777788988764      367999999988875

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.73  E-value=3.6e-19  Score=167.70  Aligned_cols=176  Identities=15%  Similarity=0.193  Sum_probs=117.9

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   77 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHA-GEVHALLGGNGAGKSTLMKIIAGIVP------------PDSGTLEIGGNPCAR   77 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECCC
Confidence            4778999999976  69999999998 99999999999999999999999986            56666  56655433


Q ss_pred             eCHHHHHH----Hhhcc-chhhhheecccc------cCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263          143 VSKEEFLQ----MVDKN-ELLEYALVYGDY------KGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       143 ~~~~~~~~----~i~~~-~~~~~~~~~~~~------~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      .+......    .+.+. .+.....+..++      .....+.+.+.+         ......+++|++|++.+|++++.
T Consensus        78 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~  157 (510)
T PRK15439         78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR  157 (510)
T ss_pred             CCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence            33322221    11111 111111111111      001112223322         22224566789999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~------~~~~d~i~~l~~G~i  218 (510)
T PRK15439        158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI------RQLADRISVMRDGTI  218 (510)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            8888888      7777777777776653  234667779988875      367999999988865

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.73  E-value=4.1e-19  Score=153.27  Aligned_cols=176  Identities=17%  Similarity=0.134  Sum_probs=114.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc---
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD---  139 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~---  139 (286)
                      .++++|+++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.+   
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   72 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYP-GEVLGIVGESGSGKTTLLNALSARLA------------PDAGEVHYRMRDGQL   72 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCccccc
Confidence            3678899999874  78999999998 99999999999999999999999986            55565  55554   


Q ss_pred             --eeeeCHHHHHH----H---hhccc---h------hhhhe----eccc-ccCccHHHHHHH----------HhcCCcEE
Q 043263          140 --YFFVSKEEFLQ----M---VDKNE---L------LEYAL----VYGD-YKGIPKKQIREY----------MAKGYDIV  186 (286)
Q Consensus       140 --~~~~~~~~~~~----~---i~~~~---~------~~~~~----~~~~-~~~~~~~~i~~~----------~~~g~~~v  186 (286)
                        +...+......    .   +.+..   +      .++..    .+.. .+....+.+.++          +......+
T Consensus        73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  152 (258)
T PRK11701         73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF  152 (258)
T ss_pred             cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence              33222222111    0   11111   0      00100    0000 000001111111          22334557


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ++|++|++.+||+++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|++++
T Consensus       153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~------~~~~d~i~~l~  226 (258)
T PRK11701        153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA------RLLAHRLLVMK  226 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHhcCEEEEEE
Confidence            78999999999999988888888      7777777777766542   234667789988875      35799999999


Q ss_pred             CCCH
Q 043263          258 EGKL  261 (286)
Q Consensus       258 ~G~i  261 (286)
                      +|++
T Consensus       227 ~g~i  230 (258)
T PRK11701        227 QGRV  230 (258)
T ss_pred             CCEE
Confidence            8876

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.73  E-value=1.9e-19  Score=161.73  Aligned_cols=171  Identities=19%  Similarity=0.192  Sum_probs=108.3

Q ss_pred             hHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC----H
Q 043263           72 SLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS----K  145 (286)
Q Consensus        72 ~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~----~  145 (286)
                      ||++.|+....++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++....    .
T Consensus         5 ~l~k~~~~~~~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~~~g~~~~~~~~~~~~   71 (352)
T PRK11144          5 NFKQQLGDLCLTVNLTLPA-QGITAIFGRSGAGKTSLINAISGLTR------------PQKGRIVLNGRVLFDAEKGICL   71 (352)
T ss_pred             EEEEEeCCEEEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEcccccccccc
Confidence            6677776533377888887 99999999999999999999999986            55554  4554432110    0


Q ss_pred             HHHHHH---h-hccchhhhheeccccc-C---ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263          146 EEFLQM---V-DKNELLEYALVYGDYK-G---IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFV  208 (286)
Q Consensus       146 ~~~~~~---i-~~~~~~~~~~~~~~~~-~---~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~I  208 (286)
                      ...+..   + ++..+..+..+..++. +   ...+.+.+.         +......+++|++||+++||+++.+|+++|
T Consensus        72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL  151 (352)
T PRK11144         72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL  151 (352)
T ss_pred             chhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            011111   1 1111221212222210 0   111222222         233345677899999999999998888888


Q ss_pred             E------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          209 F------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       209 l------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~------~~~~d~i~~l~~G~i  207 (352)
T PRK11144        152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI------LRLADRVVVLEQGKV  207 (352)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH------HHhCCEEEEEeCCEE
Confidence            7      7776667676666542   234677789988765      478999999999876

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=7.9e-19  Score=151.56  Aligned_cols=180  Identities=18%  Similarity=0.179  Sum_probs=114.1

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCC--cCCccee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.. ..        .+..|+  ++|.++.
T Consensus        12 ~l~i~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~--------~~~~G~i~~~g~~~~   82 (259)
T PRK14274         12 VYQINGMNLWYGQHHALKNINLSIPE-NEVTAIIGPSGCGKSTFIKTLNLMIQMVPN--------VKLTGEMNYNGSNIL   82 (259)
T ss_pred             eEEEeeEEEEECCeeeEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccCCCC--------CCCceEEEECCEEcc
Confidence            4788999999975  79999999998 999999999999999999999998641 00        002344  4454432


Q ss_pred             e--eCHHHHHHHh---hcc------chhhhheecccccCc-cH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263          142 F--VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-PK----KQIREY-------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~--~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~~----~~i~~~-------------~~~g~~~v~~~~~q  192 (286)
                      .  .....++..+   .+.      ...++..+....++. ..    +.+.+.             +......+++|++|
T Consensus        83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q  162 (259)
T PRK14274         83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ  162 (259)
T ss_pred             ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence            1  1111111111   111      112222111111111 11    111111             12233456778999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.++++++.+|+++++      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~G~i  232 (259)
T PRK14274        163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA------ARVSDQTAFFYMGEL  232 (259)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH------HHhCCEEEEEECCEE
Confidence            99999999988888888      77777777777776542 33667778988874      368999999988875

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.72  E-value=5.8e-19  Score=152.47  Aligned_cols=182  Identities=16%  Similarity=0.142  Sum_probs=114.5

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..+.++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .|..|+  ++|.++.
T Consensus        12 ~~l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-------~p~~G~i~~~g~~~~   83 (260)
T PRK10744         12 SKIQVRNLNFYYGKFHALKNINLDIAK-NQVTAFIGPSGCGKSTLLRTFNRMYELYPE-------QRAEGEILLDGENIL   83 (260)
T ss_pred             ceEEEEEEEEEeCCeEEeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCC-------CCcceEEEECCEEcc
Confidence            34778899999975  79999999998 999999999999999999999998631000       023444  4444332


Q ss_pred             e--eCHHHHHHHh----hcc-----chhhhheeccccc-CccH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263          142 F--VSKEEFLQMV----DKN-----ELLEYALVYGDYK-GIPK----KQIREY-------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~--~~~~~~~~~i----~~~-----~~~~~~~~~~~~~-~~~~----~~i~~~-------------~~~g~~~v~~~~~q  192 (286)
                      .  .+...++..+    ++.     ...++.......+ +...    +.+.++             +......+++|++|
T Consensus        84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q  163 (260)
T PRK10744         84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ  163 (260)
T ss_pred             ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence            1  1111112111    111     1112111100000 1111    111211             22334457789999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...      ...||+++++++|++
T Consensus       164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  233 (260)
T PRK10744        164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQA------ARCSDYTAFMYLGEL  233 (260)
T ss_pred             HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            99999999988888888      77777777777776542 33566778988764      367999999998875

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.72  E-value=1.7e-18  Score=145.03  Aligned_cols=160  Identities=12%  Similarity=0.031  Sum_probs=94.0

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc---CCcceeeeCHHHHHHHhhccc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV---NGKDYFFVSKEEFLQMVDKNE  156 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~---~g~~~~~~~~~~~~~~i~~~~  156 (286)
                      +++++++.+.+ |++++|+||||||||||+++|+|+++            |.+|++   +|..+. ....  ...+....
T Consensus         2 vl~~vs~~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~------------~~sG~i~~~~~~~~~-~~~~--~~l~~~lt   65 (213)
T PRK15177          2 VLDKTDFVMGY-HEHIGILAAPGSGKTTLTRLLCGLDA------------PDEGDFIGLRGDALP-LGAN--SFILPGLT   65 (213)
T ss_pred             eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCCCEEEecCceec-cccc--cccCCcCc
Confidence            35677777777 99999999999999999999999986            555652   222211 1000  00111111


Q ss_pred             hhhhheecccccCccHHHHHH----------HHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHH
Q 043263          157 LLEYALVYGDYKGIPKKQIRE----------YMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVE  220 (286)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~----------~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~  220 (286)
                      ..++..+....++...+.+..          ........+.+|++|++++|++++.+|+++|+      +|+.+...+.+
T Consensus        66 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~  145 (213)
T PRK15177         66 GEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA  145 (213)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence            222221111111222111111          11222234667899999999999977776666      34444445555


Q ss_pred             HHHH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          221 RLVE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       221 rl~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+.+ ....+...++|++...      ...||+++++++|++
T Consensus       146 ~l~~~~~~~~ii~vsH~~~~~------~~~~d~i~~l~~G~i  181 (213)
T PRK15177        146 ALACQLQQKGLIVLTHNPRLI------KEHCHAFGVLLHGKI  181 (213)
T ss_pred             HHHHHhhCCcEEEEECCHHHH------HHhcCeeEEEECCeE
Confidence            5543 2233666678888764      357999999998865

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=5.2e-19  Score=152.08  Aligned_cols=181  Identities=19%  Similarity=0.211  Sum_probs=111.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .|..|+  ++|.++..
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~i~~   75 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPE-NSVTAIIGPSGCGKSTVLRSINRMHDLVPS-------ARVTGKILLDDTDIYD   75 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHHhcccCCCC-------CCCceEEEECCEEccc
Confidence            4678899999975  79999999998 999999999999999999999998631000       012333  44443321


Q ss_pred             e--CHHHHHHHh----hcc------chhhhheecccccC-ccH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263          143 V--SKEEFLQMV----DKN------ELLEYALVYGDYKG-IPK----KQIREY-------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       143 ~--~~~~~~~~i----~~~------~~~~~~~~~~~~~~-~~~----~~i~~~-------------~~~g~~~v~~~~~q  192 (286)
                      .  ....++..+    ++.      ...++........+ ...    +.+.+.             +......+++|++|
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (252)
T PRK14256         76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ  155 (252)
T ss_pred             ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence            1  111111111    111      11111111000001 011    112221             12233456778999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i  225 (252)
T PRK14256        156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQA------ARVSDYTAFFYMGDL  225 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHH------HhhCCEEEEEECCEE
Confidence            99999999988888888      77776777777666542 23566678988874      378999999988875

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.72  E-value=9.6e-19  Score=148.96  Aligned_cols=167  Identities=17%  Similarity=0.186  Sum_probs=103.6

Q ss_pred             HHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHH
Q 043263           75 ASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQ  150 (286)
Q Consensus        75 ~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~  150 (286)
                      ..|+.  +|+++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.+... ....+..
T Consensus        29 ~~~~~~~il~~vs~~i~~-Ge~~~i~G~NGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~   94 (236)
T cd03267          29 RKYREVEALKGISFTIEK-GEIVGFIGPNGAGKTTTLKILSGLLQ------------PTSGEVRVAGLVPWK-RRKKFLR   94 (236)
T ss_pred             cccCCeeeeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEccc-cchhhcc
Confidence            34444  78899999998 99999999999999999999999986            44444  34432211 0001111


Q ss_pred             H---h-hcc-ch------hhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263          151 M---V-DKN-EL------LEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       151 ~---i-~~~-~~------~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~  206 (286)
                      .   + ++. .+      .++.......++...+    .+...+         ......+++|++|++.+|++++.+|++
T Consensus        95 ~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l  174 (236)
T cd03267          95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI  174 (236)
T ss_pred             cEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            0   0 010 11      1111111111111111    112221         222234667899999999999988888


Q ss_pred             EEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          207 FVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~G~i  232 (236)
T cd03267         175 LFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDI------EALARRVLVIDKGRL  232 (236)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHH------HHhCCEEEEEeCCEE
Confidence            888      7777777777777653   234667778988764      367999999998875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.72  E-value=7.9e-19  Score=149.38  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=111.3

Q ss_pred             HhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           69 LLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        69 ~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      .++|+++.|+. .++++++.+.+ |++++|+|+|||||||++++|+|++.            |..|+  ++|.++.....
T Consensus         2 ~~~~l~~~~~~~~l~~is~~i~~-Ge~~~i~G~nG~GKStLl~~l~G~~~------------p~~G~v~i~g~~~~~~~~   68 (235)
T cd03299           2 KVENLSKDWKEFKLKNVSLEVER-GDYFVILGPTGSGKSVLLETIAGFIK------------PDSGKILLNGKDITNLPP   68 (235)
T ss_pred             eeEeEEEEeCCceeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEcCcCCh
Confidence            35667777754 78888888888 99999999999999999999999986            55554  45544321111


Q ss_pred             HHHHHH---h-hc------cchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263          146 EEFLQM---V-DK------NELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       146 ~~~~~~---i-~~------~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      .  ...   + ++      ....++..+.....+..    .+.+.++         +......+++|+.|++.+|++++.
T Consensus        69 ~--~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  146 (235)
T cd03299          69 E--KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV  146 (235)
T ss_pred             h--HcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc
Confidence            0  000   0 11      11111111100011111    1112222         222334577889999999999999


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++++      ||+.+...+.+.|.+..   +.+...++|++...      ...||+++++++|++
T Consensus       147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~------~~~~d~i~~l~~G~i  208 (235)
T cd03299         147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA------WALADKVAIMLNGKL  208 (235)
T ss_pred             CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            9988888      88887888877776531   34667778988774      367999999988876

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.72  E-value=1.1e-18  Score=150.18  Aligned_cols=181  Identities=18%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .|..|+  ++|+++..
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~   77 (253)
T PRK14242          6 KMEARGLSFFYGDFQALHDISLEFEQ-NQVTALIGPSGCGKSTFLRCLNRMNDLIPG-------ARVEGEILLDGENIYD   77 (253)
T ss_pred             EEEEeeeEEEECCeeeecceeEEEeC-CCEEEEECCCCCCHHHHHHHHHhhcccCCC-------CCCceEEEECCEEccc
Confidence            4778899999975  79999999998 999999999999999999999998520000       023444  45544321


Q ss_pred             --eCHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHHH-------------hcCCcEEEEeCHHH
Q 043263          143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREYM-------------AKGYDIVLRVDIQG  193 (286)
Q Consensus       143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~~-------------~~g~~~v~~~~~q~  193 (286)
                        .....++..+   .+.      ...++..+.....+. .    .+.+.+.+             ......+++|++|+
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  157 (253)
T PRK14242         78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR  157 (253)
T ss_pred             cccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence              1111111111   111      111211110000111 0    11122221             22234567889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~------~~~~d~v~~l~~G~i  226 (253)
T PRK14242        158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA------ARVSDVTAFFYMGKL  226 (253)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888877      77777777777666532 33666678988874      367999999998876

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.72  E-value=9.4e-20  Score=150.57  Aligned_cols=164  Identities=15%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             HHhHhHHHHhcc--------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--c
Q 043263           68 ELLRSLEASLGH--------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--V  135 (286)
Q Consensus        68 i~~~~v~~~~~~--------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~  135 (286)
                      ++++||++.|+.        .+.++++.+.+ |++++|+||||||||||+++|+|++  .            |..|+  +
T Consensus         4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~-Ge~~~l~G~nGsGKStLl~~i~Gl~~~~------------~~~G~i~~   70 (194)
T cd03213           4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKP-GELTAIMGPSGAGKSTLLNALAGRRTGL------------GVSGEVLI   70 (194)
T ss_pred             EEEEeeEEEEecCCCcccccceecceEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCC------------CCceEEEE
Confidence            456778888752        68888999998 9999999999999999999999997  6            56666  6


Q ss_pred             CCcceeeeCHHHHHHHhhccchhh-hheecccccCcc-HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263          136 NGKDYFFVSKEEFLQMVDKNELLE-YALVYGDYKGIP-KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF----  209 (286)
Q Consensus       136 ~g~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~-~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il----  209 (286)
                      +|+++..   ...+..+   .+.. +...+   ...+ .+.+.-...  ...+++|++|++.+|++++.+|+++|+    
T Consensus        71 ~g~~~~~---~~~~~~i---~~~~q~~~~~---~~~t~~~~i~~~~~--~~~LS~G~~qrv~laral~~~p~illlDEP~  139 (194)
T cd03213          71 NGRPLDK---RSFRKII---GYVPQDDILH---PTLTVRETLMFAAK--LRGLSGGERKRVSIALELVSNPSLLFLDEPT  139 (194)
T ss_pred             CCEeCch---HhhhheE---EEccCcccCC---CCCcHHHHHHHHHH--hccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            6765431   1111111   1110 00011   1111 111111111  115788999999999999988888777    


Q ss_pred             --EecCCHHHHHHHHHHhc--CCCHHHHHHHHH-HHHHHhhccCCCcEEEECCCCCH
Q 043263          210 --LAAESEMALVERLVERK--TENREELLVRIA-TAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 --ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~-~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                        ||+.+...+.+.|.+..  +.+...++|++. ..      ...||+++++++|++
T Consensus       140 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~------~~~~d~v~~l~~G~i  190 (194)
T cd03213         140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEI------FELFDKLLLLSQGRV  190 (194)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHH------HHhcCEEEEEeCCEE
Confidence              67766777766666532  336667788775 32      357999999998875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=4.6e-19  Score=157.91  Aligned_cols=179  Identities=15%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             HHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+    .  +++++++.+.+ |++++|+|+||||||||+++|+|++....        .+..|+  ++|.+
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~-Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~--------~~~~G~i~~~g~~   74 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTE-GEIRGLVGESGSGKSLIAKAICGVTKDNW--------RVTADRMRFDDID   74 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHHccCCCCC--------CCcceEEEECCEE
Confidence            56788888883    2  78999999998 99999999999999999999999874100        023454  56665


Q ss_pred             eeeeCHHHHHHH-------hhccc---h------hhhheec--cc-ccC-------ccHHHHHHHH------------hc
Q 043263          140 YFFVSKEEFLQM-------VDKNE---L------LEYALVY--GD-YKG-------IPKKQIREYM------------AK  181 (286)
Q Consensus       140 ~~~~~~~~~~~~-------i~~~~---~------~~~~~~~--~~-~~~-------~~~~~i~~~~------------~~  181 (286)
                      +...+...+...       +.|+.   +      .++....  .. ..+       ...+.+.+.+            ..
T Consensus        75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~  154 (330)
T PRK15093         75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS  154 (330)
T ss_pred             CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence            544444333221       11111   0      0000000  00 000       0011222222            22


Q ss_pred             CCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          182 GYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       182 g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      ....+++|+.||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+
T Consensus       155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v------~~~~dr  228 (330)
T PRK15093        155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML------SQWADK  228 (330)
T ss_pred             CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCE
Confidence            2345778999999999999988888888      7776677776666542   245778889999885      368999


Q ss_pred             EEECCCCCH
Q 043263          253 VVVNAEGKL  261 (286)
Q Consensus       253 viv~~~G~i  261 (286)
                      |+++++|++
T Consensus       229 i~vm~~G~i  237 (330)
T PRK15093        229 INVLYCGQT  237 (330)
T ss_pred             EEEEECCEE
Confidence            999998876

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.71  E-value=1.5e-18  Score=150.53  Aligned_cols=176  Identities=13%  Similarity=0.122  Sum_probs=112.0

Q ss_pred             HHhHhHHHHhc---------c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--
Q 043263           68 ELLRSLEASLG---------H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--  134 (286)
Q Consensus        68 i~~~~v~~~~~---------~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--  134 (286)
                      ++++||++.|+         .  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~sG~i~   70 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKS-GETVALLGRSGCGKSTLARLLVGLES------------PSQGNVS   70 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEE
Confidence            45678888886         2  68999999998 99999999999999999999999986            55665  


Q ss_pred             cCCcceeeeCHHH---HHHHh---hccc---hhhhheeccc-------ccCccH----HHHHHH----------HhcCCc
Q 043263          135 VNGKDYFFVSKEE---FLQMV---DKNE---LLEYALVYGD-------YKGIPK----KQIREY----------MAKGYD  184 (286)
Q Consensus       135 ~~g~~~~~~~~~~---~~~~i---~~~~---~~~~~~~~~~-------~~~~~~----~~i~~~----------~~~g~~  184 (286)
                      ++|.++...+...   ++..+   .+..   +........+       ......    ..+.+.          ......
T Consensus        71 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  150 (268)
T PRK10419         71 WRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPP  150 (268)
T ss_pred             ECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCc
Confidence            5665543332211   11111   1111   1110000000       001111    112222          122334


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEE
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVV  255 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv  255 (286)
                      .+++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||++++
T Consensus       151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i------~~~~d~i~~  224 (268)
T PRK10419        151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLV------ERFCQRVMV  224 (268)
T ss_pred             cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHH------HHhCCEEEE
Confidence            5678899999999999988887777      6666666666666542   244677778988874      357999999


Q ss_pred             CCCCCHH
Q 043263          256 NAEGKLD  262 (286)
Q Consensus       256 ~~~G~i~  262 (286)
                      +++|++.
T Consensus       225 l~~G~i~  231 (268)
T PRK10419        225 MDNGQIV  231 (268)
T ss_pred             EECCEEe
Confidence            9888753

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.71  E-value=6.6e-19  Score=151.53  Aligned_cols=175  Identities=15%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc----
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD----  139 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~----  139 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |.+|+  ++|.+    
T Consensus         4 l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~   70 (253)
T TIGR02323         4 LQVSGLSKSYGGGKGCRDVSFDLYP-GEVLGIVGESGSGKSTLLGCLAGRLA------------PDHGTATYIMRSGAEL   70 (253)
T ss_pred             EEEeeeEEEeCCceEeecceEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEEeccccccc
Confidence            667888998875  68999999998 99999999999999999999999986            55555  44543    


Q ss_pred             -eeeeCHHHHH----HHh---hccc---h------hhhhee----cc-cccCccHHHHHHH----------HhcCCcEEE
Q 043263          140 -YFFVSKEEFL----QMV---DKNE---L------LEYALV----YG-DYKGIPKKQIREY----------MAKGYDIVL  187 (286)
Q Consensus       140 -~~~~~~~~~~----~~i---~~~~---~------~~~~~~----~~-~~~~~~~~~i~~~----------~~~g~~~v~  187 (286)
                       +...+.....    ..+   .+..   +      .++...    .. ..+....+.+.++          +......++
T Consensus        71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LS  150 (253)
T TIGR02323        71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFS  150 (253)
T ss_pred             ccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcC
Confidence             3222222211    111   1111   0      001000    00 0000011122222          122334467


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +|++|++.+|++++.+|+++|+      ||+.+.+.+.+.|.+.   .+.+...++|.+...      ...||+++++++
T Consensus       151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~------~~~~d~~~~l~~  224 (253)
T TIGR02323       151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA------RLLAQRLLVMQQ  224 (253)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEEC
Confidence            7899999999999988888888      7777677776666542   234677788988774      357999999998


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       225 G~i  227 (253)
T TIGR02323       225 GRV  227 (253)
T ss_pred             CEE
Confidence            875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.71  E-value=1.1e-19  Score=149.88  Aligned_cols=166  Identities=14%  Similarity=0.183  Sum_probs=107.7

Q ss_pred             HHhHhHHHHhc-----c-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG-----H-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~-----~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++|+++.|+     . .++++++.+.+ |++++|+||||||||||+++|+|++.          .+|..|+  ++|.+
T Consensus         4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~----------~~~~~G~i~~~g~~   72 (192)
T cd03232           4 LTWKNLNYTVPVKGGKRQLLNNISGYVKP-GTLTALMGESGAGKTTLLDVLAGRKT----------AGVITGEILINGRP   72 (192)
T ss_pred             EEEeeeEEEecCCCCceEeEEccEEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCc----------CCCcceEEEECCEe
Confidence            45677777775     2 68888888888 99999999999999999999999742          0145665  56665


Q ss_pred             eeeeCHHHHHHHhhccchhhh-heecccccCcc-HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------Ee
Q 043263          140 YFFVSKEEFLQMVDKNELLEY-ALVYGDYKGIP-KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LA  211 (286)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld  211 (286)
                      +.    ..++..+   .+... ...+   ...+ .+.+.-....  ..+.+|++|++.+|++++.+|+++|+      ||
T Consensus        73 ~~----~~~~~~i---~~~~q~~~~~---~~~tv~~~l~~~~~~--~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD  140 (192)
T cd03232          73 LD----KNFQRST---GYVEQQDVHS---PNLTVREALRFSALL--RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD  140 (192)
T ss_pred             hH----HHhhhce---EEecccCccc---cCCcHHHHHHHHHHH--hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC
Confidence            42    1111111   11000 0000   0111 1111110000  15888999999999999988888888      77


Q ss_pred             cCCHHHHHHHHHHh--cCCCHHHHHHHHHH-HHHHhhccCCCcEEEECCC-CCHH
Q 043263          212 AESEMALVERLVER--KTENREELLVRIAT-AREEVQHVKNFDYVVVNAE-GKLD  262 (286)
Q Consensus       212 ~~~~~~l~~rl~~r--~~~t~~~i~~rl~~-~~~~~~~~~~~d~viv~~~-G~i~  262 (286)
                      +.+...+.+.+.+.  .+.+...++|+++. .      ...||+|+++++ |++.
T Consensus       141 ~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~------~~~~d~i~~l~~~g~i~  189 (192)
T cd03232         141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASI------FEKFDRLLLLKRGGKTV  189 (192)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEEcCChHHH------HhhCCEEEEEcCCCeEE
Confidence            77777777777653  23466777888763 2      367999999988 7653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.71  E-value=5e-18  Score=140.24  Aligned_cols=178  Identities=14%  Similarity=0.185  Sum_probs=119.6

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..|+++||+..|.+  +|.+++..+.+ |+-.+|+||||||||||++++++.++            |.+|.  +.|+.+.
T Consensus        30 ~li~l~~v~v~r~gk~iL~~isW~V~~-ge~W~I~G~NGsGKTTLL~ll~~~~~------------pssg~~~~~G~~~G   96 (257)
T COG1119          30 PLIELKNVSVRRNGKKILGDLSWQVNP-GEHWAIVGPNGAGKTTLLSLLTGEHP------------PSSGDVTLLGRRFG   96 (257)
T ss_pred             ceEEecceEEEECCEeeccccceeecC-CCcEEEECCCCCCHHHHHHHHhcccC------------CCCCceeeeeeecc
Confidence            45899999999987  89999999999 99999999999999999999999876            43333  3333322


Q ss_pred             eeCH-HHHHHHh------hccch-----hhhhee------ccccc-CccHHHHHHH------------HhcCCcEEEEeC
Q 043263          142 FVSK-EEFLQMV------DKNEL-----LEYALV------YGDYK-GIPKKQIREY------------MAKGYDIVLRVD  190 (286)
Q Consensus       142 ~~~~-~~~~~~i------~~~~~-----~~~~~~------~~~~~-~~~~~~i~~~------------~~~g~~~v~~~~  190 (286)
                      ..+. .++++.+      ....|     ..+...      .+.++ ..+.++..++            ..+-...++.|+
T Consensus        97 ~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge  176 (257)
T COG1119          97 KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGE  176 (257)
T ss_pred             CCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhH
Confidence            2111 3333332      00111     111111      11122 2333222221            223345667789


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKT----ENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~----~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++++-+|||++.+|.++|+      ||....+.+.+++.+...    .+...|+|..+..      ...+++++.+.+|.
T Consensus       177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi------~~~~th~lll~~g~  250 (257)
T COG1119         177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI------PPCFTHRLLLKEGE  250 (257)
T ss_pred             HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc------ccccceEEEeeCCc
Confidence            9999999999999999999      788778888888886532    2456678887775      57788998888886


Q ss_pred             HH
Q 043263          261 LD  262 (286)
Q Consensus       261 i~  262 (286)
                      +.
T Consensus       251 v~  252 (257)
T COG1119         251 VV  252 (257)
T ss_pred             ee
Confidence            53

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.71  E-value=8.2e-19  Score=165.03  Aligned_cols=176  Identities=17%  Similarity=0.206  Sum_probs=115.0

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~------------p~~G~i~~~g~~~~~   70 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYP-GRVMALVGENGAGKSTMMKVLTGIYT------------RDAGSILYLGKEVTF   70 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCC
Confidence            3678899999975  78999999998 99999999999999999999999986            56665  56655432


Q ss_pred             eCHHHH-HHH---hhcc-------chhhhheeccccc---C-ccH----HHHHHHHh---------cCCcEEEEeCHHHH
Q 043263          143 VSKEEF-LQM---VDKN-------ELLEYALVYGDYK---G-IPK----KQIREYMA---------KGYDIVLRVDIQGA  194 (286)
Q Consensus       143 ~~~~~~-~~~---i~~~-------~~~~~~~~~~~~~---~-~~~----~~i~~~~~---------~g~~~v~~~~~q~v  194 (286)
                      .+.... +..   +.+.       ...++..+....+   + ...    +.+.+.+.         .....+++|++|++
T Consensus        71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv  150 (501)
T PRK10762         71 NGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV  150 (501)
T ss_pred             CCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence            222111 110   1111       1122211110000   1 111    12222221         12245667899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~------~~~~d~i~~l~~G~i  219 (501)
T PRK10762        151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEI------FEICDDVTVFRDGQF  219 (501)
T ss_pred             HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeCCEE
Confidence            999999988888777      7776666776555542  233667779988875      368999999998875

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.7e-18  Score=150.18  Aligned_cols=178  Identities=20%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|+++....       .|..|+  ++|.++..
T Consensus        13 ~l~i~nl~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~-------~p~~G~v~~~g~~i~~   84 (269)
T PRK14259         13 IISLQNVTISYGTFEAVKNVFCDIPR-GKVTALIGPSGCGKSTVLRSLNRMNDLIEG-------CSLKGRVLFDGTDLYD   84 (269)
T ss_pred             eEEEEeEEEEECCEEEEcceEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEEccc
Confidence            4788999999975  79999999998 999999999999999999999998641000       023444  45544321


Q ss_pred             --eCHHHHHHHh---hcc------chhhhheecccccCcc---HHHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263          143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGIP---KKQIREY-------------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~---~~~i~~~-------------~~~g~~~v~~~~~q~v~  195 (286)
                        .+...++..+   .+.      ...++..+.....+..   .+.+.++             +......+++|++|++.
T Consensus        85 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~  164 (269)
T PRK14259         85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC  164 (269)
T ss_pred             ccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence              1122222211   111      1122221111111111   1112221             12222446678999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...      ...||+++++++
T Consensus       165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~  228 (269)
T PRK14259        165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQA------VRVSDMTAFFNA  228 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEec
Confidence            99999988888888      77776777777776542 23566778988765      478999999986

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.4e-18  Score=149.72  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=114.2

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC----
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN----  136 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~----  136 (286)
                      ...+.++++++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++    
T Consensus         8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~iaG~~~------------~~~G~v~~~G~~~   74 (257)
T PRK14246          8 EDVFNISRLYLYINDKAILKDITIKIPN-NSIFGIMGPSGSGKSTLLKVLNRLIE------------IYDSKIKVDGKVL   74 (257)
T ss_pred             hhheeeeeEEEecCCceeEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCcCceeEcCEEE
Confidence            456889999999987  79999999998 99999999999999999999999976            44443  22    


Q ss_pred             --CcceeeeCHHHHHHHh----hccch------hhhheecccccCc-cHH----HHHHHHh-------------cCCcEE
Q 043263          137 --GKDYFFVSKEEFLQMV----DKNEL------LEYALVYGDYKGI-PKK----QIREYMA-------------KGYDIV  186 (286)
Q Consensus       137 --g~~~~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~-~~~----~i~~~~~-------------~g~~~v  186 (286)
                        |.+........++..+    ++..+      .++..+.....+. ..+    .+.++++             .....+
T Consensus        75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  154 (257)
T PRK14246         75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL  154 (257)
T ss_pred             ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC
Confidence              2332212222222211    11111      1111110000011 111    1122211             122345


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      .+|++|+++++++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+.+..      ...||+++++++|
T Consensus       155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~------~~~~d~v~~l~~g  228 (257)
T PRK14246        155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV------ARVADYVAFLYNG  228 (257)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHH------HHhCCEEEEEECC
Confidence            56888999999999988888888      77777777777776542 34667778988874      3689999999888


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       229 ~i  230 (257)
T PRK14246        229 EL  230 (257)
T ss_pred             EE
Confidence            65

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.5e-18  Score=148.95  Aligned_cols=181  Identities=19%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-  142 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++....       .|..|+  ++|.++.. 
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~~~~~   75 (249)
T PRK14253          4 FNIENLDLFYGENQALKSINLPIPA-RQVTALIGPSGCGKSTLLRCLNRMNDLIEG-------VKITGKLTMDGEDIYGN   75 (249)
T ss_pred             EEEeccEEEECCeeeeecceEEecC-CCEEEEECCCCCCHHHHHHHHHhhcccccC-------CCCceEEEECCEEcccc
Confidence            567888988875  79999999998 999999999999999999999998752100       012444  45544321 


Q ss_pred             eCHHHHHHHh----hccc-----hhhhheecccccCcc-H----HHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263          143 VSKEEFLQMV----DKNE-----LLEYALVYGDYKGIP-K----KQIREY-------------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~~~~~~i----~~~~-----~~~~~~~~~~~~~~~-~----~~i~~~-------------~~~g~~~v~~~~~q~v~  195 (286)
                      .+...++..+    ++..     ..++..+....++.. .    +.+.+.             +......+++|+.|++.
T Consensus        76 ~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  155 (249)
T PRK14253         76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC  155 (249)
T ss_pred             cchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence            1111222111    1111     111111100011111 1    111111             22233456778999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++.
T Consensus       156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~------~~~~d~i~~l~~G~i~  223 (249)
T PRK14253        156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQA------RRISDRTAFFLMGELV  223 (249)
T ss_pred             HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHH------HHhCCEEEEEECCEEE
Confidence            99999988888777      66666667766666532 23666778988774      3679999999988763

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.71  E-value=2.8e-19  Score=160.77  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=107.2

Q ss_pred             hHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH---
Q 043263           72 SLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK---  145 (286)
Q Consensus        72 ~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~---  145 (286)
                      ||++.|+. .+ ++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++.....   
T Consensus         4 ~l~~~~~~~~~-~isl~i~~-Gei~~l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~~~g~~i~~~~~~~~   69 (354)
T TIGR02142         4 RFSKRLGDFSL-DADFTLPG-QGVTAIFGRSGSGKTTLIRLIAGLTR------------PDEGEIVLNGRTLFDSRKGIF   69 (354)
T ss_pred             EEEEEECCEEE-EEEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECccCccccc
Confidence            45666764 34 77888887 99999999999999999999999986            55555  45554321100   


Q ss_pred             -HHHHHH---h-hccchhhhheecccc------cCc-c-HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          146 -EEFLQM---V-DKNELLEYALVYGDY------KGI-P-KKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       146 -~~~~~~---i-~~~~~~~~~~~~~~~------~~~-~-~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                       ...+..   + ++..+..+..+..++      ... . .+.+.+.         +......+++|++|++++||+++.+
T Consensus        70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~  149 (354)
T TIGR02142        70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS  149 (354)
T ss_pred             cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence             011110   1 111111111111111      000 0 1112222         2223345778999999999999988


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~------~~~~d~i~~l~~G~i  210 (354)
T TIGR02142       150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV------LRLADRVVVLEDGRV  210 (354)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEeCCEE
Confidence            888888      7777777777766542   234677789988875      367999999999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.71  E-value=1.1e-18  Score=181.39  Aligned_cols=169  Identities=13%  Similarity=0.185  Sum_probs=116.3

Q ss_pred             HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC--Ccc
Q 043263           67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN--GKD  139 (286)
Q Consensus        67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~--g~~  139 (286)
                      .++++|++|.|+.     .|+++++.+++ |+.++|+|++|||||||+++|.|+++            |.+|.+.  ...
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~-Ge~vaIvG~sGSGKSTLl~lLlG~~~------------~~~G~i~~~~~~  680 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPV-GSLVAIVGGTGEGKTSLISAMLGELS------------HAETSSVVIRGS  680 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCc------------ccCCCEEEecCc
Confidence            5889999999963     69999999998 99999999999999999999999987            4444310  111


Q ss_pred             eeeeCHHHHHHHhhccchhhhheecccccCccHHHHH------------HHHhcCCcE--------EEEeCHHHHHHHHH
Q 043263          140 YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIR------------EYMAKGYDI--------VLRVDIQGARTLRR  199 (286)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~g~~~--------v~~~~~q~v~iara  199 (286)
                      +..++++.+   +.++.+.+|. .+++.  .+.+.+.            +.+++|.++        ++|||+||+++|||
T Consensus       681 Iayv~Q~p~---Lf~gTIreNI-~fg~~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA  754 (1495)
T PLN03232        681 VAYVPQVSW---IFNATVRENI-LFGSD--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA  754 (1495)
T ss_pred             EEEEcCccc---cccccHHHHh-hcCCc--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence            222222110   1122222322 22221  1222221            224555555        44689999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|+++||      ||+.++..+.+++..  ..+.|...++|+++.       ...||+|+++++|++
T Consensus       755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~-------l~~aD~Ii~L~~G~i  817 (1495)
T PLN03232        755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF-------LPLMDRIILVSEGMI  817 (1495)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhh-------HHhCCEEEEEeCCEE
Confidence            9999999999      787777767666433  234588888999987       578999999999875

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.71  E-value=1.4e-18  Score=138.94  Aligned_cols=174  Identities=11%  Similarity=0.111  Sum_probs=116.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +..+|+.++|+.  +++++++.+.+ |++|||+||||+||||...++.|+..            |++|.  ++|.|+..+
T Consensus         5 L~a~~l~K~y~kr~Vv~~Vsl~v~~-GEiVGLLGPNGAGKTT~Fymi~Glv~------------~d~G~i~ld~~diT~l   71 (243)
T COG1137           5 LVAENLAKSYKKRKVVNDVSLEVNS-GEIVGLLGPNGAGKTTTFYMIVGLVR------------PDSGKILLDDEDITKL   71 (243)
T ss_pred             EEehhhhHhhCCeeeeeeeeEEEcC-CcEEEEECCCCCCceeEEEEEEEEEe------------cCCceEEECCcccccC
Confidence            567899999997  89999999998 99999999999999999999999976            88887  788888766


Q ss_pred             CHHHHHHH-----hhccchhhhheeccccc------Ccc------HHHHHHH---------HhcCCcEEEEeCHHHHHHH
Q 043263          144 SKEEFLQM-----VDKNELLEYALVYGDYK------GIP------KKQIREY---------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       144 ~~~~~~~~-----i~~~~~~~~~~~~~~~~------~~~------~~~i~~~---------~~~g~~~v~~~~~q~v~ia  197 (286)
                      +...-..+     .+....+....+..|+.      ..+      ...+.+.         .......+++|++.|+.+|
T Consensus        72 Pm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA  151 (243)
T COG1137          72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA  151 (243)
T ss_pred             ChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence            54332221     12222332333333321      101      1111111         2334567889999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVER---LVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~r---l~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++..+|.+++|      +||-+...+++-   |+.++ ....+-.|-....      +..||+.+++.+|++
T Consensus       152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg-iGvLITDHNVREt------L~i~dRaYIi~~G~v  217 (243)
T COG1137         152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG-IGVLITDHNVRET------LDICDRAYIISDGKV  217 (243)
T ss_pred             HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC-ceEEEccccHHHH------HhhhheEEEEecCeE
Confidence            999988888777      777666555443   44442 2333334544443      578999988877754

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.2e-18  Score=150.40  Aligned_cols=181  Identities=19%  Similarity=0.221  Sum_probs=112.4

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  +|+++++.+.+ |++++|+|+||||||||+++|+|++.....       .|.+|+  ++|.++..
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~-------~~~~G~I~~~g~~~~~   75 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEP-RSVTAFIGPSGCGKSTVLRTLNRMHEVIPG-------ARVEGEVLLDGEDLYG   75 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCcccC-------CCcceEEEECCEeccc
Confidence            3678899999975  78999999998 999999999999999999999998741000       013454  45544321


Q ss_pred             --eCHHHHHHHh----hcc------chhhhheecccccCc-cH----HHHHHH-------------HhcCCcEEEEeCHH
Q 043263          143 --VSKEEFLQMV----DKN------ELLEYALVYGDYKGI-PK----KQIREY-------------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       143 --~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~-~~----~~i~~~-------------~~~g~~~v~~~~~q  192 (286)
                        .....++..+    ++.      ...++.......++. ..    +.+.++             .......+++|++|
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (258)
T PRK14241         76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ  155 (258)
T ss_pred             cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence              1111111111    111      112221110001111 11    111221             22233456778999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC------CC
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA------EG  259 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~------~G  259 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...      ...||+|++++      +|
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~------~~~~d~i~~l~~~~~~~~g  229 (258)
T PRK14241        156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQA------ARVSDQTAFFNLEATGKPG  229 (258)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEecccCCCCc
Confidence            99999999988888888      77776777777766532 23666778988874      36899998885      67


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       230 ~i  231 (258)
T PRK14241        230 RL  231 (258)
T ss_pred             eE
Confidence            65

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.71  E-value=8.8e-19  Score=165.20  Aligned_cols=175  Identities=17%  Similarity=0.160  Sum_probs=116.5

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         5 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~liG~nGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~~i~~   71 (510)
T PRK09700          5 YISMAGIGKSFGPVHALKSVNLTVYP-GEIHALLGENGAGKSTLMKVLSGIHE------------PTKGTITINNINYNK   71 (510)
T ss_pred             eEEEeeeEEEcCCeEEeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCcC------------CCccEEEECCEECCC
Confidence            3678899999975  78999999998 99999999999999999999999986            55665  56655533


Q ss_pred             eCHHHHHH-H---hhcc-------chhhhheeccc-----ccCc---cH----HHHHHHHh---------cCCcEEEEeC
Q 043263          143 VSKEEFLQ-M---VDKN-------ELLEYALVYGD-----YKGI---PK----KQIREYMA---------KGYDIVLRVD  190 (286)
Q Consensus       143 ~~~~~~~~-~---i~~~-------~~~~~~~~~~~-----~~~~---~~----~~i~~~~~---------~g~~~v~~~~  190 (286)
                      .+...... .   +.+.       ...++.. ++.     .++.   ..    +.+.+.+.         .....+++|+
T Consensus        72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  150 (510)
T PRK09700         72 LDHKLAAQLGIGIIYQELSVIDELTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISH  150 (510)
T ss_pred             CCHHHHHHCCeEEEeecccccCCCcHHHHhh-hccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence            33222111 0   1111       1112211 110     0111   11    12222322         1223566789


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~------~~~~d~v~~l~~G~i  223 (510)
T PRK09700        151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI------RRICDRYTVMKDGSS  223 (510)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999999988888888      7777677776666543  234677789988875      367999999988865

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.71  E-value=8.4e-19  Score=149.43  Aligned_cols=176  Identities=18%  Similarity=0.207  Sum_probs=111.0

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHH
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE  146 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~  146 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++...+.+.          ++|.++......
T Consensus         2 ~i~~l~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~----------i~g~~~~~~~~~   70 (237)
T TIGR00968         2 EIANISKRFGSFQALDDVNLEVPT-GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR----------LNGQDATRVHAR   70 (237)
T ss_pred             EEEEEEEEECCeeeeeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----------ECCEEcCcCChh
Confidence            45677777765  78899999988 999999999999999999999999863333222          344332211110


Q ss_pred             H--H------HHHhhccchhhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          147 E--F------LQMVDKNELLEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       147 ~--~------~~~i~~~~~~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      .  +      ...+......++..+....++..    .+.+.++         .......+++|+.|++.++++++.+|+
T Consensus        71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (237)
T TIGR00968        71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ  150 (237)
T ss_pred             hcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            0  0      00111111122211110111111    1122222         222234566789999999999999998


Q ss_pred             EEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|+      ||+.+...+.+.|.+..   +.+...++|++...      .+.||+++++++|.+
T Consensus       151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~------~~~~d~i~~l~~g~i  209 (237)
T TIGR00968       151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA------MEVADRIVVMSNGKI  209 (237)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhcCEEEEEECCEE
Confidence            8888      88887888877776531   34677778988864      367999999988875

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.1e-18  Score=150.03  Aligned_cols=180  Identities=15%  Similarity=0.157  Sum_probs=111.0

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-  142 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       ...+|+  ++|.++.. 
T Consensus         5 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~~~~~   76 (252)
T PRK14272          5 LSAQDVNIYYGDKQAVKNVNLDVQR-GTVNALIGPSGCGKTTFLRAINRMHDLTPG-------ARVTGRILLDGQDIYGP   76 (252)
T ss_pred             EEEeeeEEEECCEEeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCcC-------CCCceeEEECCEEcccC
Confidence            567888888875  79999999998 999999999999999999999998751100       001344  44443321 


Q ss_pred             -eCHHHHHHHh----hcc------chhhhheecccccCc-cHH----HHHH-------------HHhcCCcEEEEeCHHH
Q 043263          143 -VSKEEFLQMV----DKN------ELLEYALVYGDYKGI-PKK----QIRE-------------YMAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 -~~~~~~~~~i----~~~------~~~~~~~~~~~~~~~-~~~----~i~~-------------~~~~g~~~v~~~~~q~  193 (286)
                       .....++..+    ++.      .+.++........+. ..+    .+.+             ........+++|++|+
T Consensus        77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  156 (252)
T PRK14272         77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR  156 (252)
T ss_pred             ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence             0111111111    111      111211110000010 111    1111             1122234566789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...      ...||+|+++++|++
T Consensus       157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  225 (252)
T PRK14272        157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQA------ARVSDTTSFFLVGDL  225 (252)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999989988888      77777777777776542 23566678988874      357999999998875

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.71  E-value=2.1e-18  Score=143.62  Aligned_cols=168  Identities=15%  Similarity=0.223  Sum_probs=103.7

Q ss_pred             HhHhHHHHhc-------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           69 LLRSLEASLG-------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        69 ~~~~v~~~~~-------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      +++||++.|+       ..++++++.+.+ |++++|+||||||||||+++|+|+++            |.+|+  ++| .
T Consensus         2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~-G~~~~i~G~nG~GKSTLl~~i~G~~~------------~~~G~i~~~g-~   67 (204)
T cd03250           2 SVEDASFTWDSGEQETSFTLKDINLEVPK-GELVAIVGPVGSGKSSLLSALLGELE------------KLSGSVSVPG-S   67 (204)
T ss_pred             EEeEEEEecCCCCccccceeeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhCcCC------------CCCCeEEEcC-E
Confidence            3566777774       267888888888 99999999999999999999999986            66666  455 2


Q ss_pred             eeeeCHHHHHHHhhccchhhhheecccccCccHHHH------HHHH-----------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263          140 YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQI------REYM-----------AKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i------~~~~-----------~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      +.++.....  .+ .....++..+............      .+.+           ......+++|++|++.+||+++.
T Consensus        68 i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~  144 (204)
T cd03250          68 IAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS  144 (204)
T ss_pred             EEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            322222110  01 1122222221111000000000      0111           11224466789999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHH-HHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          203 DSAVFVF------LAAESEMALVERL-VER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl-~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      +|+++|+      ||+.+.+.+.+.+ .+.  .+.+...++|++...       ..||+++++++|+
T Consensus       145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~-------~~~d~i~~l~~G~  204 (204)
T cd03250         145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL-------PHADQIVVLDNGR  204 (204)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH-------hhCCEEEEEeCCC
Confidence            8888888      7776555565543 322  234667778988774       3499999998774

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.71  E-value=2.2e-18  Score=146.19  Aligned_cols=162  Identities=17%  Similarity=0.123  Sum_probs=102.2

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHhhc----
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMVDK----  154 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i~~----  154 (286)
                      ++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  ++|.++...+...  ..+.+    
T Consensus         1 l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~~~~--~~v~q~~~l   65 (230)
T TIGR01184         1 LKGVNLTIQQ-GEFISLIGHSGCGKSTLLNLISGLAQ------------PTSGGVILEGKQITEPGPDR--MVVFQNYSL   65 (230)
T ss_pred             CCceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCCCChhh--eEEecCccc
Confidence            3566777776 99999999999999999999999986            55555  4554432111110  11111    


Q ss_pred             ---cchhhhheec-cc-ccCccH----HHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------E
Q 043263          155 ---NELLEYALVY-GD-YKGIPK----KQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------L  210 (286)
Q Consensus       155 ---~~~~~~~~~~-~~-~~~~~~----~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------l  210 (286)
                         ....++.... .. ......    +.+.+.         +......+++|++|++.+|++++.+|+++|+      |
T Consensus        66 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL  145 (230)
T TIGR01184        66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGAL  145 (230)
T ss_pred             CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence               1112221110 00 011111    112222         2233345778999999999999988888888      7


Q ss_pred             ecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          211 AAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       211 d~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      |+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++..
T Consensus       146 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~------~~~~d~v~~l~~G~i~~  195 (230)
T TIGR01184       146 DALTRGNLQEELMQIWEEHRVTVLMVTHDVDEA------LLLSDRVVMLTNGPAAN  195 (230)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCEEEEEeCCcEec
Confidence            777777777777653   234677789988864      36799999999887643

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.71  E-value=1.1e-18  Score=150.18  Aligned_cols=177  Identities=12%  Similarity=0.029  Sum_probs=111.2

Q ss_pred             HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      ++++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++...        .++.|+  ++|.++....
T Consensus         5 l~~~~l~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--------~~~~G~i~~~g~~i~~~~   75 (254)
T PRK10418          5 IELRNIALQAAQPLVHGVSLTLQR-GRVLALVGGSGSGKSLTCAAALGILPAGV--------RQTAGRVLLDGKPVAPCA   75 (254)
T ss_pred             EEEeCeEEEeccceecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCC--------CCcCCEEEECCeeccccc
Confidence            667888888843 78999999998 99999999999999999999999976200        014554  4554432100


Q ss_pred             HHHHHH---Hhhccc---hh------hhheecccccCc--cHHHHHHH------------HhcCCcEEEEeCHHHHHHHH
Q 043263          145 KEEFLQ---MVDKNE---LL------EYALVYGDYKGI--PKKQIREY------------MAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       145 ~~~~~~---~i~~~~---~~------~~~~~~~~~~~~--~~~~i~~~------------~~~g~~~v~~~~~q~v~iar  198 (286)
                        ....   .+.+..   +.      ++........+.  ..+.+.+.            +......+++|+.|++.+|+
T Consensus        76 --~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar  153 (254)
T PRK10418         76 --LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL  153 (254)
T ss_pred             --cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence              0000   011110   10      110000000111  11122222            12333557789999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~------~~~~d~v~~l~~G~i  219 (254)
T PRK10418        154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV------ARLADDVAVMSHGRI  219 (254)
T ss_pred             HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99988888888      7777666776666543   234667778988874      367999999988865

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.71  E-value=1.8e-18  Score=144.10  Aligned_cols=169  Identities=14%  Similarity=0.101  Sum_probs=105.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~v~~~g~~~~~~   68 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNA-GELVQIEGPNGAGKTSLLRILAGLAR------------PDAGEVLWQGEPIRRQ   68 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEcccc
Confidence            346778888865  78999999998 99999999999999999999999986            55665  555544321


Q ss_pred             CHHHHHHHh----hcc------chhhhheecccccC-ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          144 SKEEFLQMV----DKN------ELLEYALVYGDYKG-IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       144 ~~~~~~~~i----~~~------~~~~~~~~~~~~~~-~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                      .. .+...+    ++.      ...++.......++ ...+.+.++         .......+++|++|++.+|++++.+
T Consensus        69 ~~-~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         69 RD-EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             hH-HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            11 111111    111      11122111111111 111222222         2223345778899999999999988


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          204 SAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      |+++|+      ||+.+.+.+.+.|.+.  .+.+...++|++...      ....+++++.
T Consensus       148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i------~~~~~~~~~~  202 (204)
T PRK13538        148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV------ASDKVRKLRL  202 (204)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh------ccCCceEEec
Confidence            888888      7776677776666543  233667778887773      2445566655

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.71  E-value=5.5e-19  Score=146.92  Aligned_cols=173  Identities=13%  Similarity=0.130  Sum_probs=107.0

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++||+|.|+.      .+.++++.+.+ |++++|+|+||||||||+++|+|+++..         .|..|+  ++|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---------~~~~G~i~i~g~~   73 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVVKP-GEMVLVLGRPGSGCSTLLKALANRTEGN---------VSVEGDIHYNGIP   73 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEECC-CcEEEEECCCCCCHHHHHHHhcccCCCC---------CCcceEEEECCEE
Confidence            356788888852      68899999998 9999999999999999999999987410         034554  56655


Q ss_pred             eeeeCHHHHHHHh---h-ccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------
Q 043263          140 YFFVSKEEFLQMV---D-KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------  209 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------  209 (286)
                      +..... ..+..+   . +..+.....+..++... . ..  ........+.+|++|++.+|++++.+|+++|+      
T Consensus        74 ~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~~l~~~-~-~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~  148 (202)
T cd03233          74 YKEFAE-KYPGEIIYVSEEDVHFPTLTVRETLDFA-L-RC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRG  148 (202)
T ss_pred             Cccchh-hhcceEEEEecccccCCCCcHHHHHhhh-h-hh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCcc
Confidence            432211 111111   1 11111111111111000 0 00  02223345678999999999999989988888      


Q ss_pred             EecCCHHHHHHHHHHhc---CCCHHHH-HHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 LAAESEMALVERLVERK---TENREEL-LVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 ld~~~~~~l~~rl~~r~---~~t~~~i-~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+.+...+.+.+.+..   +.+...+ .|..+..      ...||+++++++|++
T Consensus       149 LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~------~~~~d~i~~l~~G~i  198 (202)
T cd03233         149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI------YDLFDKVLVLYEGRQ  198 (202)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH------HHhCCeEEEEECCEE
Confidence            77777777777766532   2233333 4444442      367999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.4e-18  Score=149.26  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=111.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-  142 (286)
                      +.++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .+..|+  ++|.++.. 
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~~~~~   75 (250)
T PRK14240          4 ISVKDLDLFYGDFQALKKINLDIEE-NQVTALIGPSGCGKSTFLRTLNRMNDLIPS-------VKIEGEVLLDGQDIYKS   75 (250)
T ss_pred             EEEEEEEEEECCceeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEEcccc
Confidence            567888888865  78999999998 999999999999999999999997531000       012343  44544321 


Q ss_pred             -eCHHHHHHHh---hcc------chhhhheecccccCc-----cHHHHHHH-------------HhcCCcEEEEeCHHHH
Q 043263          143 -VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-----PKKQIREY-------------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       143 -~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-----~~~~i~~~-------------~~~g~~~v~~~~~q~v  194 (286)
                       .....++..+   .+.      ...++..+.....+.     ..+.+.+.             .......+++|++|++
T Consensus        76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  155 (250)
T PRK14240         76 DIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL  155 (250)
T ss_pred             ccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence             0111111111   111      111111111001111     01111111             2233345778899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~------~~~~d~v~~l~~G~i  223 (250)
T PRK14240        156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQA------SRISDKTAFFLNGEI  223 (250)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH------HhhCCEEEEEECCEE
Confidence            999999988888888      77777777767666532 33666778988764      367999999998876

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=8.7e-18  Score=140.85  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=117.1

Q ss_pred             HHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee------eCH
Q 043263           74 EASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF------VSK  145 (286)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~------~~~  145 (286)
                      ...+|.-.-+.++..+. ..+.+|.|+|||||||++|+++|+..            |++|.  ++|.-+.+      ++.
T Consensus         7 ~~~lG~~~l~a~~~~p~-~GvTAlFG~SGsGKTslin~IaGL~r------------PdeG~I~lngr~L~Ds~k~i~lp~   73 (352)
T COG4148           7 RQRLGNFALDANFTLPA-RGITALFGPSGSGKTSLINMIAGLTR------------PDEGRIELNGRVLVDAEKGIFLPP   73 (352)
T ss_pred             hhhcCceEEEEeccCCC-CceEEEecCCCCChhhHHHHHhccCC------------ccccEEEECCEEeecccCCcccCh
Confidence            34455434455667765 57899999999999999999999986            77776  55654332      222


Q ss_pred             H--HHHHHhhccchhhhheecccc-cCc---cHHHH---------HHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          146 E--EFLQMVDKNELLEYALVYGDY-KGI---PKKQI---------REYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       146 ~--~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~i---------~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                      +  .+...+++..++.+..+.+|+ |+.   ....+         ...+..-..++++|++||++|.||++..|.++++ 
T Consensus        74 ~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD  153 (352)
T COG4148          74 EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             hhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence            2  223344666677777777774 332   12222         2235666788999999999999999988888777 


Q ss_pred             -----EecCCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 -----LAAESEMALV---ERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 -----ld~~~~~~l~---~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                           ||.+-+.+++   +||.+.-+..+.-++|-++..      .+.||+|+++++|++
T Consensus       154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev------~RLAd~vV~le~GkV  207 (352)
T COG4148         154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV------LRLADRVVVLENGKV  207 (352)
T ss_pred             CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH------HhhhheEEEecCCeE
Confidence                 6766555554   566555444555668877765      589999999999976

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.71  E-value=2e-17  Score=130.36  Aligned_cols=179  Identities=17%  Similarity=0.199  Sum_probs=114.9

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..+++.|+.++||.  .|..+++.-.. |.+|.|+|.|||||||+++|+.=+-.            |..|.  ++|+.+.
T Consensus         5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~-GdVisIIGsSGSGKSTfLRCiN~LE~------------P~~G~I~v~geei~   71 (256)
T COG4598           5 NALEVEDLHKRYGEHEVLKGVSLQANA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSAGSIRVNGEEIR   71 (256)
T ss_pred             cceehhHHHhhcccchhhcceeeecCC-CCEEEEecCCCCchhHHHHHHHhhcC------------CCCceEEECCeEEE
Confidence            35889999999997  89999999887 99999999999999999999986544            55555  4455433


Q ss_pred             ----------eeCHHHHHHHh-------hccchhhhheeccc-------ccCccHHH-HHHH---H---------hcCCc
Q 043263          142 ----------FVSKEEFLQMV-------DKNELLEYALVYGD-------YKGIPKKQ-IREY---M---------AKGYD  184 (286)
Q Consensus       142 ----------~~~~~~~~~~i-------~~~~~~~~~~~~~~-------~~~~~~~~-i~~~---~---------~~g~~  184 (286)
                                ..+..++..+.       +.-.+..+.++..|       ..+.++.+ ++.+   +         .....
T Consensus        72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~  151 (256)
T COG4598          72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA  151 (256)
T ss_pred             eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc
Confidence                      22444443332       22122222222222       22333322 2222   1         12234


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      .+++|+.||++|||++.-.|.+++|      |||.-...+.+-+.+.  .+.|...++|.+..++      ..+.+|+.+
T Consensus       152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR------~Vss~v~fL  225 (256)
T COG4598         152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR------DVSSHVIFL  225 (256)
T ss_pred             ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHH------hhhhheEEe
Confidence            5678999999999999988888888      5554333443433332  2347777899888763      567778878


Q ss_pred             CCCCHHH
Q 043263          257 AEGKLDS  263 (286)
Q Consensus       257 ~~G~i~~  263 (286)
                      .+|.++|
T Consensus       226 h~G~iEE  232 (256)
T COG4598         226 HQGKIEE  232 (256)
T ss_pred             ecceecc
Confidence            7777655

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.71  E-value=2.2e-18  Score=148.04  Aligned_cols=180  Identities=18%  Similarity=0.159  Sum_probs=118.1

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||+..|..      +++++++.+.+ |+++||+|.|||||||+++.|.++++.....       ...|+  ++|.+
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~-GE~lgiVGESGsGKS~~~~aim~llp~~~~~-------i~~G~i~f~g~~   73 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKK-GEILGIVGESGSGKSVLAKAIMGLLPKPNAR-------IVGGEILFDGKD   73 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcC-CcEEEEEcCCCCCHHHHHHHHHhccCCCCCe-------EeeeEEEECCcc
Confidence            345677776643      68899999998 9999999999999999999999998621111       11344  66777


Q ss_pred             eeeeCHHHHHHH-------hhccch-------------hhhheecccccCccHH----HH------------HHHHhcCC
Q 043263          140 YFFVSKEEFLQM-------VDKNEL-------------LEYALVYGDYKGIPKK----QI------------REYMAKGY  183 (286)
Q Consensus       140 ~~~~~~~~~~~~-------i~~~~~-------------~~~~~~~~~~~~~~~~----~i------------~~~~~~g~  183 (286)
                      +..++.++++..       +.|+..             .+-...+...  ...+    .+            ++.+..-.
T Consensus        74 l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~--~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP  151 (316)
T COG0444          74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--LSKKEAKERAIELLELVGIPDPERRLKSYP  151 (316)
T ss_pred             cccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence            766666644332       222211             1111111110  0111    11            11234445


Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      .-++||.+||+.+|-++..+|+++|.      ||+.....+.+.|++   ..+.+...|+|++...      ...||+|.
T Consensus       152 helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv------a~~aDri~  225 (316)
T COG0444         152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV------AEIADRVA  225 (316)
T ss_pred             cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcceEE
Confidence            67889999999999999988888777      666555555555543   2344778889999976      58999999


Q ss_pred             ECCCCCHHH
Q 043263          255 VNAEGKLDS  263 (286)
Q Consensus       255 v~~~G~i~~  263 (286)
                      |+..|++.|
T Consensus       226 VMYaG~iVE  234 (316)
T COG0444         226 VMYAGRIVE  234 (316)
T ss_pred             EEECcEEEE
Confidence            999997644

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.7e-18  Score=148.73  Aligned_cols=181  Identities=22%  Similarity=0.199  Sum_probs=113.0

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+.....       ..+.+|+  ++|.++..
T Consensus         4 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-------~~~~~G~i~~~g~~i~~   75 (251)
T PRK14270          4 KMESKNLNLWYGEKQALNDINLPIYE-NKITALIGPSGCGKSTFLRCLNRMNDLIS-------NVKIEGEVLLDGKNIYD   75 (251)
T ss_pred             EEEEEEeEEEECCeeeeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCccc-------CCCCccEEEECCEeccc
Confidence            3567888888864  78999999998 99999999999999999999999864100       0013454  45554421


Q ss_pred             e--CHHHHHHHh----hcc-----chhhhheecccccCc-cH----HHHHHH-------------HhcCCcEEEEeCHHH
Q 043263          143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-PK----KQIREY-------------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~~----~~i~~~-------------~~~g~~~v~~~~~q~  193 (286)
                      .  ....++..+    ++.     ...++..+....++. ..    +.+.++             .......+++|++|+
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  155 (251)
T PRK14270         76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR  155 (251)
T ss_pred             ccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence            1  111111111    111     112222111111111 11    111111             223345567789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.++++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~------~~~~d~v~~l~~G~i  224 (251)
T PRK14270        156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA------SRVSDYTAFFLMGDL  224 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH------HHhcCEEEEEECCeE
Confidence            9999999988888888      77776777777666532 34666778988764      367999999998875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.71  E-value=1.4e-18  Score=140.73  Aligned_cols=133  Identities=15%  Similarity=0.105  Sum_probs=95.1

Q ss_pred             HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      .||++.|+.  .+.+ .+.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++.+..+ 
T Consensus         4 ~~l~~~~~~~~~l~~-~~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~~q-   68 (177)
T cd03222           4 PDCVKRYGVFFLLVE-LGVVKE-GEVIGIVGPNGTGKTTAVKILAGQLI------------PNGDNDEWDGITPVYKPQ-   68 (177)
T ss_pred             CCeEEEECCEEEEcc-CcEECC-CCEEEEECCCCChHHHHHHHHHcCCC------------CCCcEEEECCEEEEEEcc-
Confidence            466777765  4555 466776 99999999999999999999999986            77776  45543322110 


Q ss_pred             HHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHH
Q 043263          147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVE  220 (286)
Q Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~  220 (286)
                                         ..                 .+++|++|++.+|++++.+|+++++      ||+.+...+.+
T Consensus        69 -------------------~~-----------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~  112 (177)
T cd03222          69 -------------------YI-----------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR  112 (177)
T ss_pred             -------------------cC-----------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence                               00                 0778999999999999988877777      66655555655


Q ss_pred             HHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          221 RLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       221 rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .+.+.   ++.+...++|++...      ...||++++++++.
T Consensus       113 ~l~~~~~~~~~tiiivsH~~~~~------~~~~d~i~~l~~~~  149 (177)
T cd03222         113 AIRRLSEEGKKTALVVEHDLAVL------DYLSDRIHVFEGEP  149 (177)
T ss_pred             HHHHHHHcCCCEEEEEECCHHHH------HHhCCEEEEEcCCC
Confidence            55542   224667778988774      35799999888663

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=1.1e-18  Score=164.29  Aligned_cols=178  Identities=13%  Similarity=0.176  Sum_probs=116.4

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|+++..          |.+|+  ++|.++..
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----------~~~G~i~~~g~~~~~   73 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRA-GEIVSLCGENGAGKSTLMKVLSGVYPHG----------TYEGEIIFEGEELQA   73 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCC----------CCCeEEEECCEECCC
Confidence            3778899999975  79999999998 9999999999999999999999987510          14565  56655433


Q ss_pred             eCHHHH-HHH---hhcc-------chhhhheeccccc--C-ccH----HHHHHHHh---------cCCcEEEEeCHHHHH
Q 043263          143 VSKEEF-LQM---VDKN-------ELLEYALVYGDYK--G-IPK----KQIREYMA---------KGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~~~-~~~---i~~~-------~~~~~~~~~~~~~--~-~~~----~~i~~~~~---------~g~~~v~~~~~q~v~  195 (286)
                      .+.... +..   +.+.       ...++..+....+  + ...    +.+.+++.         .....+++|++||++
T Consensus        74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~  153 (506)
T PRK13549         74 SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE  153 (506)
T ss_pred             CCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence            222211 111   1111       1122211111010  1 111    12233322         122356678999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~------~~~~d~v~~l~~G~i  221 (506)
T PRK13549        154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV------KAISDTICVIRDGRH  221 (506)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH------HHhcCEEEEEECCEE
Confidence            99999988888888      7777777777766553  234677789988875      367999999998875

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.5e-18  Score=149.16  Aligned_cols=181  Identities=17%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+++....       .+..|+  ++|.++..
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPE-RQITAIIGPSGCGKSTLLRALNRMNDIVSG-------ARLEGAVLLDNENIYS   75 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCcccc-------CCcccEEEECCEEccc
Confidence            3667888888875  78999999998 999999999999999999999998762210       011344  44443321


Q ss_pred             e--CHHHHHHHh----hcc-----chhhhheecccccCcc-----HHHHHH-------------HHhcCCcEEEEeCHHH
Q 043263          143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGIP-----KKQIRE-------------YMAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~~-----~~~i~~-------------~~~~g~~~v~~~~~q~  193 (286)
                      .  +...++..+    ++.     ...++..+.....+..     .+.+..             .+......+.+|++|+
T Consensus        76 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr  155 (251)
T PRK14249         76 PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR  155 (251)
T ss_pred             cccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence            0  111111111    111     1122211111111111     111111             1233344577889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.++|+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|.+
T Consensus       156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~------~~~~d~i~~l~~G~i  224 (251)
T PRK14249        156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQA------ARASDWTGFLLTGDL  224 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhCCEEEEEeCCeE
Confidence            9999999988888888      77766766666665432 34667779988875      467999999988875

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.3e-18  Score=150.85  Aligned_cols=181  Identities=18%  Similarity=0.180  Sum_probs=113.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++....       ..|..|+  ++|.++..
T Consensus        21 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~i~~~g~~i~~   92 (268)
T PRK14248         21 ILEVKDLSIYYGEKRAVNDISMDIEK-HAVTALIGPSGCGKSTFLRSINRMNDLIP-------SARSEGEILYEGLNILD   92 (268)
T ss_pred             eEEEEEEEEEeCCceeeeceEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcccccC-------CCCCceEEEECCEEccc
Confidence            4788999999975  79999999998 99999999999999999999999752000       0023343  44443321


Q ss_pred             e--CHHHHHHHh----hcc-----chhhhheecccccCc-----cHHHHHH-------------HHhcCCcEEEEeCHHH
Q 043263          143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-----PKKQIRE-------------YMAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-----~~~~i~~-------------~~~~g~~~v~~~~~q~  193 (286)
                      .  ....++..+    ++.     ...++....-.....     ..+.+.+             .+......+++|++|+
T Consensus        93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  172 (268)
T PRK14248         93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR  172 (268)
T ss_pred             ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence            1  111111111    111     111111100000000     0111111             1233345577889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~------~~~~d~v~~l~~G~i  241 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQA------LRVSDRTAFFLNGDL  241 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888888      78777777777776542 23666778988864      368999999998875

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.7e-18  Score=148.68  Aligned_cols=180  Identities=19%  Similarity=0.217  Sum_probs=111.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++....       .|..|+  ++|.++...
T Consensus         4 l~~~~l~~~~~~~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-------~~~~G~i~i~g~~~~~~   75 (250)
T PRK14262          4 IEIENFSAYYGEKKAVKNVTMKIFK-NQITAIIGPSGCGKTTLLRSINRMNDHIPG-------FRVEGKIYFKGQDIYDP   75 (250)
T ss_pred             EEEEeeEEEeCCceeEeeeeEeecC-CCEEEEECCCCCCHHHHHHHHhccccCCCC-------CCcceEEEECCEEcccc
Confidence            567888888874  68999999998 999999999999999999999998641000       013444  445433211


Q ss_pred             C--HHHHHHHh----hcc-----chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHHH
Q 043263          144 S--KEEFLQMV----DKN-----ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       144 ~--~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~v  194 (286)
                      +  ....+..+    ++.     ...++..+....++. .    .+.+.++             .......+++|++|++
T Consensus        76 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~  155 (250)
T PRK14262         76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL  155 (250)
T ss_pred             hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence            0  11111111    111     111211110001111 1    1111111             2223345677899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~------~~~~d~i~~l~~G~i  223 (250)
T PRK14262        156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQA------IRIADYIAFMYRGEL  223 (250)
T ss_pred             HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999999988888888      77777777777776532 23566778988864      367999999988875

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.3e-18  Score=151.45  Aligned_cols=181  Identities=17%  Similarity=0.188  Sum_probs=113.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++...++       .|..|+  ++|.++..
T Consensus        21 ~l~i~nl~~~~~~~~il~~vs~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~   92 (276)
T PRK14271         21 AMAAVNLTLGFAGKTVLDQVSMGFPA-RAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-------YRYSGDVLLGGRSIFN   92 (276)
T ss_pred             EEEEeeEEEEECCEEEeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCcCCC-------CCCceEEEECCEEccc
Confidence            4788999999976  78999999998 999999999999999999999998752100       013444  44543321


Q ss_pred             eC-HHHHHHHh---hcc------chhhhheecccccC-ccHHHH----HHH-------------HhcCCcEEEEeCHHHH
Q 043263          143 VS-KEEFLQMV---DKN------ELLEYALVYGDYKG-IPKKQI----REY-------------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       143 ~~-~~~~~~~i---~~~------~~~~~~~~~~~~~~-~~~~~i----~~~-------------~~~g~~~v~~~~~q~v  194 (286)
                      .. ...++..+   .+.      ...++......... ...+..    .+.             +......+++|++|++
T Consensus        93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl  172 (276)
T PRK14271         93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL  172 (276)
T ss_pred             cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence            11 11111111   111      11111111000000 111111    111             1223345677899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+||+++.+|+++|+      ||+.+...+.+.|.+.. ..+...++|++...      ...||+++++++|++
T Consensus       173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~------~~~~dri~~l~~G~i  240 (276)
T PRK14271        173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQA------ARISDRAALFFDGRL  240 (276)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999999988888877      77766777777666542 23666778988764      367999999998865

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.70  E-value=7.4e-18  Score=140.85  Aligned_cols=174  Identities=22%  Similarity=0.219  Sum_probs=110.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh-----
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV-----  152 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i-----  152 (286)
                      +++++++.+|+ |++++++|+|||||||++|+|.|++.            |.+|.  +.|.+-.. .++++...+     
T Consensus        39 AVqdisf~IP~-G~ivgflGaNGAGKSTtLKmLTGll~------------p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~g  104 (325)
T COG4586          39 AVQDISFEIPK-GEIVGFLGANGAGKSTTLKMLTGLLL------------PTSGKVRVNGKDPFR-RREEYLRSIGLVMG  104 (325)
T ss_pred             hhheeeeecCC-CcEEEEEcCCCCcchhhHHHHhCccc------------cCCCeEEecCcCcch-hHHHHHHHHHHHhh
Confidence            67888888888 99999999999999999999999986            77777  67775532 333332221     


Q ss_pred             hcc------chhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecC
Q 043263          153 DKN------ELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE  213 (286)
Q Consensus       153 ~~~------~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~  213 (286)
                      +..      ...+...+...+|.++.+...+.             +...-..++.|++.++.+|.+++ .++.++|||.|
T Consensus       105 qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLL-h~p~VLfLDEp  183 (325)
T COG4586         105 QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALL-HPPKVLFLDEP  183 (325)
T ss_pred             hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhc-CCCcEEEecCC
Confidence            111      11222333334555555444333             22222346678999999999999 55556665555


Q ss_pred             C-------HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH--HHHHHHHHHHHHH
Q 043263          214 S-------EMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL--DSAVKLVESVIDA  274 (286)
Q Consensus       214 ~-------~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i--~~~~~~l~~~i~~  274 (286)
                      +       ...+.+-+++.   .+.|+...+|.++..      ...||+|+.++.|++  +..+.++.+.+..
T Consensus       184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di------~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~  250 (325)
T COG4586         184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI------ATLCDRVLLIDQGQLVFDGTLAQLQEQFGP  250 (325)
T ss_pred             ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhH------HHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence            4       44454445432   222444447877765      478999999999975  4455666555443

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.8e-18  Score=149.98  Aligned_cols=181  Identities=20%  Similarity=0.184  Sum_probs=113.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  +|+++++.+.+ |++++|+|+||||||||+++|+|++....       -.|..|+  ++|.++..
T Consensus        20 ~l~~~nl~~~~~~~~il~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~i~~~g~~~~~   91 (267)
T PRK14237         20 ALSTKDLHVYYGKKEAIKGIDMQFEK-NKITALIGPSGSGKSTYLRSLNRMNDTID-------IARVTGQILYRGIDINR   91 (267)
T ss_pred             EEEEeeEEEEECCeeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCccC-------CCCcceEEEECCEEccc
Confidence            4788999999975  79999999998 99999999999999999999999874100       0023454  45544321


Q ss_pred             e--CHHHHHHHh---hcc------chhhhheecccccCc-cH----HHHHH-------------HHhcCCcEEEEeCHHH
Q 043263          143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-PK----KQIRE-------------YMAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~~----~~i~~-------------~~~~g~~~v~~~~~q~  193 (286)
                      .  .....+..+   .+.      ...++........+. ..    +.+.+             .+......+++|++|+
T Consensus        92 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr  171 (267)
T PRK14237         92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR  171 (267)
T ss_pred             ccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence            0  111111111   111      111221110000111 11    11111             1223334567789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+||+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~------~~~~d~i~~l~~G~i  240 (267)
T PRK14237        172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQA------ARASDYTAFFYLGDL  240 (267)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhcCEEEEEECCEE
Confidence            9999999988888877      66666677777666542 23566668988764      368999999998875

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.6e-18  Score=149.01  Aligned_cols=180  Identities=18%  Similarity=0.184  Sum_probs=111.5

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .|..|+  ++|.++...
T Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-------~~~~G~v~i~g~~~~~~   76 (251)
T PRK14251          5 ISAKDVHLSYGNYEALHGISLDFEE-KELTALIGPSGCGKSTFLRCLNRMNDDIEN-------IKITGEIKFEGQNIYGS   76 (251)
T ss_pred             EEEEeeEEEECCeeeeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhhccccccC-------CCcceEEEECCEEcccc
Confidence            667899999975  78999999998 999999999999999999999998741000       012333  444433210


Q ss_pred             --CHHHHHHHh----hcc-----chhhhheecccccCcc-----HHHHHHH-------------HhcCCcEEEEeCHHHH
Q 043263          144 --SKEEFLQMV----DKN-----ELLEYALVYGDYKGIP-----KKQIREY-------------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       144 --~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~~-----~~~i~~~-------------~~~g~~~v~~~~~q~v  194 (286)
                        ....++..+    ++.     ...++.......++..     .+.+.++             +......+++|++|++
T Consensus        77 ~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~  156 (251)
T PRK14251         77 KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI  156 (251)
T ss_pred             cchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence              111111111    111     1112111100001110     1111111             1222345667899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~------~~~~d~i~~l~~G~i  224 (251)
T PRK14251        157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQA------GRISDQTAFLMNGDL  224 (251)
T ss_pred             HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHH------HhhcCEEEEEECCEE
Confidence            999999988888888      77777777777776542 34667778988874      367999999988875

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1.5e-18  Score=149.92  Aligned_cols=178  Identities=14%  Similarity=0.089  Sum_probs=112.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .|.++++.+.+ |++++|+|+||||||||+++|+|+++.. +.+      +..|+  ++|.++..
T Consensus         7 ~l~~~nl~~~~~~~~il~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-g~i------~~~G~i~~~g~~i~~   78 (261)
T PRK14258          7 AIKVNNLSFYYDTQKILEGVSMEIYQ-SKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV------RVEGRVEFFNQNIYE   78 (261)
T ss_pred             eEEEeeEEEEeCCeeEeeceEEEEcC-CcEEEEECCCCCCHHHHHHHHhcccCCC-CCc------cccceEEECCEEhhc
Confidence            4778999999975  78999999998 9999999999999999999999997521 000      01333  44443311


Q ss_pred             --eCHHHHHHHh----hc-----cchhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263          143 --VSKEEFLQMV----DK-----NELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 --~~~~~~~~~i----~~-----~~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~  193 (286)
                        .+...++..+    +.     ....++........+. .    .+.+.++             .......+.+|+.|+
T Consensus        79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  158 (261)
T PRK14258         79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR  158 (261)
T ss_pred             cccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence              0111111111    11     1111111110000011 1    1112211             122334577889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++
T Consensus       159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i------~~~~d~i~~l~~  226 (261)
T PRK14258        159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV------SRLSDFTAFFKG  226 (261)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhcCEEEEEcc
Confidence            9999999988888888      7777777777777652   244667778988875      478999999998

>PLN03130 ABC transporter C family member; Provisional

Probab=99.70  E-value=2e-18  Score=179.92  Aligned_cols=168  Identities=14%  Similarity=0.240  Sum_probs=115.1

Q ss_pred             HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCC-CC--cCCc
Q 043263           67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP-GE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~-G~--~~g~  138 (286)
                      .++++|++|.|+.     .|+++++.+++ |+.++|+||+|||||||+++|.|.++            |.+ |+  +.| 
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~-Ge~vaIvG~sGSGKSTLl~lLlG~~~------------~~~GG~I~l~~-  679 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPV-GSLVAIVGSTGEGKTSLISAMLGELP------------PRSDASVVIRG-  679 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecC-CCEEEEECCCCCCHHHHHHHHHHhhc------------cCCCceEEEcC-
Confidence            5899999999963     59999999998 99999999999999999999999987            444 44  111 


Q ss_pred             ceeeeCHHHHHHHhhccchhhhheecccccCccHHHHH------------HHHhcCCcE--------EEEeCHHHHHHHH
Q 043263          139 DYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIR------------EYMAKGYDI--------VLRVDIQGARTLR  198 (286)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~g~~~--------v~~~~~q~v~iar  198 (286)
                      .+.+++++.+   +.++.+.+|. .++..+  +.+.+.            +.+++|.++        ++|||+||+++||
T Consensus       680 ~Iayv~Q~p~---LfngTIreNI-~fg~~~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR  753 (1622)
T PLN03130        680 TVAYVPQVSW---IFNATVRDNI-LFGSPF--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR  753 (1622)
T ss_pred             eEEEEcCccc---cCCCCHHHHH-hCCCcc--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence            1222222210   1122222222 222211  122111            123445444        4568999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHH-HH-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERL-VE-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl-~~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+++++||      ||+.++..+.+++ .. ..+.|.+.++|+++.       +..||+|+++++|++
T Consensus       754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~-------l~~aD~Ii~L~~G~i  817 (1622)
T PLN03130        754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHF-------LSQVDRIILVHEGMI  817 (1622)
T ss_pred             HHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhH-------HHhCCEEEEEeCCEE
Confidence            99999999999      7776666665543 32 234588888999977       578999999999876

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.70  E-value=4.2e-18  Score=156.44  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=123.0

Q ss_pred             HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .++++||+..|..      +++++++.+.+ |+++||+|.|||||||+++.|.|+++... .       ...|+  ++|.
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~-GE~lgIvGESGsGKSt~a~~i~gll~~~~-~-------~~~G~I~~~g~   75 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEP-GEILGIVGESGSGKSTLALALMGLLPEGG-R-------ITSGEVILDGR   75 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecC-CcEEEEEcCCCCCHHHHHHHHhccCCCCC-c-------ccceEEEECCc
Confidence            4677888888753      58999999998 99999999999999999999999986221 0       12455  5677


Q ss_pred             ceeeeCHHHHHHHh-------hccchhhhheec--cc--------ccCccHHH----HHHHH-----------hcCCcEE
Q 043263          139 DYFFVSKEEFLQMV-------DKNELLEYALVY--GD--------YKGIPKKQ----IREYM-----------AKGYDIV  186 (286)
Q Consensus       139 ~~~~~~~~~~~~~i-------~~~~~~~~~~~~--~~--------~~~~~~~~----i~~~~-----------~~g~~~v  186 (286)
                      ++..++..+.+...       .|..+-..+..+  ++        .+....++    +.+.+           ..-...+
T Consensus        76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL  155 (539)
T COG1123          76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL  155 (539)
T ss_pred             chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCccc
Confidence            76666666554432       233221111000  00        01111111    11111           1234568


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +||++||+.+|.++..+|.++|+      ||+.+...+.+.|++   ..+.+...|+|++...      ...||+|+|+.
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv------a~~aDrv~Vm~  229 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV------AELADRVVVMY  229 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH------HHhcCeEEEEE
Confidence            89999999999999989988888      777766666665543   3455777889999876      47899999999


Q ss_pred             CCCHHHH
Q 043263          258 EGKLDSA  264 (286)
Q Consensus       258 ~G~i~~~  264 (286)
                      +|.+.|.
T Consensus       230 ~G~iVE~  236 (539)
T COG1123         230 KGEIVET  236 (539)
T ss_pred             CCEEEEe
Confidence            9977543

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.70  E-value=2e-18  Score=148.47  Aligned_cols=177  Identities=18%  Similarity=0.175  Sum_probs=111.5

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC---CCCC--cCCcce
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM---RPGE--VNGKDY  140 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~---~~G~--~~g~~~  140 (286)
                      +.++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++..          .|   ..|+  ++|.++
T Consensus         6 l~~~~l~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----------~p~~~~~G~i~~~g~~~   74 (252)
T PRK14239          6 LQVSDLSVYYNKKKALNSVSLDFYP-NEITALIGPSGSGKSTLLRSINRMNDL----------NPEVTITGSIVYNGHNI   74 (252)
T ss_pred             EEEEeeEEEECCeeeeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhccccc----------CCCCCccceEEECCEEC
Confidence            677889998875  78999999998 999999999999999999999997420          02   2344  444433


Q ss_pred             eee--CHHHHHHHh----hc-----cchhhhheecccccCcc-----HHHHHH-------------HHhcCCcEEEEeCH
Q 043263          141 FFV--SKEEFLQMV----DK-----NELLEYALVYGDYKGIP-----KKQIRE-------------YMAKGYDIVLRVDI  191 (286)
Q Consensus       141 ~~~--~~~~~~~~i----~~-----~~~~~~~~~~~~~~~~~-----~~~i~~-------------~~~~g~~~v~~~~~  191 (286)
                      ...  ....++..+    ++     ....++........+..     .+.+.+             ........+++|++
T Consensus        75 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14239         75 YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ  154 (252)
T ss_pred             cCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence            110  011111111    11     11112211100001110     111111             12233345778999


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~------~~~~d~i~~l~~G~i  225 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQA------SRISDRTGFFLDGDL  225 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            999999999988888888      77777777777776532 24667778988764      367999999998865

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=2.4e-18  Score=148.06  Aligned_cols=181  Identities=16%  Similarity=0.159  Sum_probs=111.9

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|+.+....       .+..|+  ++|.++..
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~~~~   77 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPK-NRVTALIGPSGCGKSTLLRCFNRMNDLIPG-------CRITGDILYNGENIMD   77 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECC-CcEEEEECCCCCCHHHHHHHHhccccCCCC-------CCcceEEEECCEEccc
Confidence            4678899999975  79999999998 999999999999999999999997531000       001343  44443321


Q ss_pred             e--CHHHHHHHh----hcc-----chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263          143 V--SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 ~--~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~  193 (286)
                      .  .....+..+    ++.     ...++..+....++. .    .+.+.++             +......+++|++|+
T Consensus        78 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  157 (253)
T PRK14261         78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR  157 (253)
T ss_pred             cccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence            1  111111111    111     111111111000010 0    1111111             223334567889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+.+.+.+.|.+.. +.+...++|++...      ...||+++++++|++
T Consensus       158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~------~~~~d~v~~l~~G~i  226 (253)
T PRK14261        158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA------ARVSDYTGFMYLGKL  226 (253)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH------HhhCCEEEEEECCEE
Confidence            9999999988888888      77777777766666532 23666678988874      367999999988865

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.70  E-value=7.4e-18  Score=144.52  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=105.0

Q ss_pred             HhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           69 LLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        69 ~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      +++||++.  ..|.++++.+.+ |++++|+|+||||||||+++|+|+++             ..|+  ++|.++...+..
T Consensus         2 ~~~~l~~~--~~l~~vsl~i~~-Gei~~l~G~nGsGKSTLl~~l~Gl~~-------------~~G~i~~~g~~i~~~~~~   65 (248)
T PRK03695          2 QLNDVAVS--TRLGPLSAEVRA-GEILHLVGPNGAGKSTLLARMAGLLP-------------GSGSIQFAGQPLEAWSAA   65 (248)
T ss_pred             cccccchh--ceecceEEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCC-------------CCeEEEECCEecCcCCHH
Confidence            34566665  268888888887 99999999999999999999999874             2444  556554333332


Q ss_pred             HHHHHh---hcc-ch------hhhheecccccCcc----HHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhC-
Q 043263          147 EFLQMV---DKN-EL------LEYALVYGDYKGIP----KKQIREY---------MAKGYDIVLRVDIQGARTLRRILG-  202 (286)
Q Consensus       147 ~~~~~i---~~~-~~------~~~~~~~~~~~~~~----~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~-  202 (286)
                      .+...+   .+. .+      .++..+... ....    .+.+.+.         +......+++|++|++.+|++++. 
T Consensus        66 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  144 (248)
T PRK03695         66 ELARHRAYLSQQQTPPFAMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQV  144 (248)
T ss_pred             HHhhheEEecccCccCCCccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence            222211   111 11      122111111 1111    1112222         223334567789999999999985 


Q ss_pred             ------CCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 ------DSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ------~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                            .|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~------~~~~d~i~~l~~G~i  211 (248)
T PRK03695        145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT------LRHADRVWLLKQGKL  211 (248)
T ss_pred             ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence                  4466666      6666566666666543  234667778988864      478999999998865

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.6e-18  Score=161.31  Aligned_cols=171  Identities=15%  Similarity=0.216  Sum_probs=111.0

Q ss_pred             HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      +|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |.+|+  ++|.++...+..
T Consensus         2 ~nl~~~~~~~~il~~vs~~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~~~   68 (491)
T PRK10982          2 SNISKSFPGVKALDNVNLKVRP-HSIHALMGENGAGKSTLLKCLFGIYQ------------KDSGSILFQGKEIDFKSSK   68 (491)
T ss_pred             CceEEEeCCEEeeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCceEEEECCEECCCCCHH
Confidence            567778865  68999999998 99999999999999999999999986            55665  566554322221


Q ss_pred             -HHHHH---hhcc-------chhhhheeccc--ccC--ccH----HHHHHHHh---------cCCcEEEEeCHHHHHHHH
Q 043263          147 -EFLQM---VDKN-------ELLEYALVYGD--YKG--IPK----KQIREYMA---------KGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       147 -~~~~~---i~~~-------~~~~~~~~~~~--~~~--~~~----~~i~~~~~---------~g~~~v~~~~~q~v~iar  198 (286)
                       .++..   +.+.       ...++.. ++.  ..+  ...    +.+.+++.         .....+++|++|++.+|+
T Consensus        69 ~~~~~~i~~v~q~~~~~~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~  147 (491)
T PRK10982         69 EALENGISMVHQELNLVLQRSVMDNMW-LGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAK  147 (491)
T ss_pred             HHHhCCEEEEecccccccCCCHHHHhh-cccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHH
Confidence             11111   1111       1112211 110  011  111    12222221         122346678999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~------~~~~d~i~~l~~G~i  212 (491)
T PRK10982        148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI------FQLCDEITILRDGQW  212 (491)
T ss_pred             HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99988888777      7776677776666543  234677779988875      367999999998865

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.4e-18  Score=165.46  Aligned_cols=179  Identities=12%  Similarity=0.043  Sum_probs=113.2

Q ss_pred             HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263           67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~  140 (286)
                      .++++||++.|+.      +++++++.+.+ |++++|+|+||||||||+++|+|+++...+.+.          ++|..+
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~-Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~----------~~g~~~   80 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQR-GETLAIVGESGSGKSVTALALMRLLEQAGGLVQ----------CDKMLL   80 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCCeEEE----------ECCEEe
Confidence            4788999999951      68999999998 999999999999999999999999863333222          223211


Q ss_pred             ----------eeeCHHHHHH-------Hhhcc---------chhhhheecccc-cCccH----HHHHHH-----------
Q 043263          141 ----------FFVSKEEFLQ-------MVDKN---------ELLEYALVYGDY-KGIPK----KQIREY-----------  178 (286)
Q Consensus       141 ----------~~~~~~~~~~-------~i~~~---------~~~~~~~~~~~~-~~~~~----~~i~~~-----------  178 (286)
                                ...+...+..       ++.|.         ...++..+.... .+...    +.+.+.           
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~  160 (623)
T PRK10261         81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT  160 (623)
T ss_pred             ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh
Confidence                      0011111111       11111         111111100000 01111    112222           


Q ss_pred             -HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccC
Q 043263          179 -MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       179 -~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                       +......+++|++||+.+|++++.+|+++|+      ||+.+...+.+.+.+   ..+.+...++|++...      ..
T Consensus       161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~------~~  234 (623)
T PRK10261        161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV------AE  234 (623)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HH
Confidence             1233346778999999999999988888887      777766666665543   2244778889998875      47


Q ss_pred             CCcEEEECCCCCHH
Q 043263          249 NFDYVVVNAEGKLD  262 (286)
Q Consensus       249 ~~d~viv~~~G~i~  262 (286)
                      .||+|+++++|++.
T Consensus       235 ~adri~vl~~G~i~  248 (623)
T PRK10261        235 IADRVLVMYQGEAV  248 (623)
T ss_pred             hCCEEEEeeCCeec
Confidence            89999999999774

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.69  E-value=2e-18  Score=159.17  Aligned_cols=173  Identities=13%  Similarity=0.089  Sum_probs=112.2

Q ss_pred             hHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           66 KIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ..+.++|+++.|+.     +|.++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.
T Consensus        20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~-GEivgIiGpNGSGKSTLLkiLaGLl~------------P~sGeI~I~G~   86 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEYHYALNNISFEVPE-GEIVGIIGLNGSGKSTLSNLIAGVTM------------PNKGTVDIKGS   86 (549)
T ss_pred             ceeEEEEEEEecCCCccceEEeeeEEEEeC-CCEEEEEcCCCCCHHHHHHHHhCCCC------------CCceEEEECCE
Confidence            34778888888875     58899999998 99999999999999999999999986            55555  4454


Q ss_pred             cee-eeCHHHHHHHhhccchhhhheecccccCccHHH----HHH---------HHhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          139 DYF-FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ----IRE---------YMAKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       139 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----i~~---------~~~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      +.. ....    ....+....++..+....++...+.    +.+         .+......+++|++|++.+|++++.+|
T Consensus        87 ~~~i~~~~----~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P  162 (549)
T PRK13545         87 AALIAISS----GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINP  162 (549)
T ss_pred             eeeEEecc----ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence            311 0000    0001111122211111111111111    111         123334567789999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i------~~l~DrIivL~~GkI  221 (549)
T PRK13545        163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV------KSFCTKALWLHYGQV  221 (549)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            88888      7776666777766543  233667778988764      367999999988754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.69  E-value=2.8e-18  Score=162.47  Aligned_cols=181  Identities=14%  Similarity=0.143  Sum_probs=116.1

Q ss_pred             HHHhHhHHHHhc------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLG------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .++++|+++.|+      .+++++++.+.+ |++++|+||||||||||+++|+|+++....       .|.+|+  ++|.
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~   76 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEA-GETLALVGESGSGKSVTALSILRLLPSPPV-------VYPSGDIRFHGE   76 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeC-CCEEEEECCCCCcHHHHHHHHhcCCCCCcC-------CccceEEEECCE
Confidence            367889999995      168999999998 999999999999999999999999752000       013555  5666


Q ss_pred             ceeeeCHHHH---H-H---Hhhccc---hh-----hhheec--ccccCccH----HHHHHHH------------hcCCcE
Q 043263          139 DYFFVSKEEF---L-Q---MVDKNE---LL-----EYALVY--GDYKGIPK----KQIREYM------------AKGYDI  185 (286)
Q Consensus       139 ~~~~~~~~~~---~-~---~i~~~~---~~-----~~~~~~--~~~~~~~~----~~i~~~~------------~~g~~~  185 (286)
                      ++...+....   + .   .+.|..   +.     .+....  ....+...    +.+.+++            ......
T Consensus        77 ~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~  156 (529)
T PRK15134         77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ  156 (529)
T ss_pred             ecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence            5543332211   1 0   111211   10     000000  00001111    1222222            223456


Q ss_pred             EEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          186 VLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       186 v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      +++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++
T Consensus       157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~dri~~l  230 (529)
T PRK15134        157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV------RKLADRVAVM  230 (529)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH------HHhcCEEEEE
Confidence            778999999999999988888877      7777676776666542   244777889998875      3679999999


Q ss_pred             CCCCH
Q 043263          257 AEGKL  261 (286)
Q Consensus       257 ~~G~i  261 (286)
                      ++|++
T Consensus       231 ~~G~i  235 (529)
T PRK15134        231 QNGRC  235 (529)
T ss_pred             ECCEE
Confidence            98865

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.4e-18  Score=149.57  Aligned_cols=182  Identities=20%  Similarity=0.211  Sum_probs=113.6

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++....       ..|..|+  ++|.++..
T Consensus        25 ~l~~~nl~~~~~~~~il~~vs~~i~~-Ge~~~I~G~nGsGKSTLl~~laGl~~~~~-------~~~~~G~i~i~g~~i~~   96 (272)
T PRK14236         25 ALEVRNLNLFYGDKQALFDISMRIPK-NRVTAFIGPSGCGKSTLLRCFNRMNDLVD-------NCRIEGEIRLDGQNIYD   96 (272)
T ss_pred             EEEEEEEEEEECCeeEeeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcCCCcc-------CCCCceEEEECCEECcc
Confidence            4788999999975  78999999998 99999999999999999999999864100       0013444  44443321


Q ss_pred             --eCHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHHH-------------HhcCCcEEEEeCHHH
Q 043263          143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIREY-------------MAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~~-------------~~~g~~~v~~~~~q~  193 (286)
                        .....++..+   .+.      ...++..+.....+. .    .+.+.++             +......+++|++|+
T Consensus        97 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  176 (272)
T PRK14236         97 KKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQR  176 (272)
T ss_pred             cccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHH
Confidence              0111111111   111      111221110001111 0    1112221             122334566789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      +++|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++.
T Consensus       177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~------~~~~d~i~~l~~G~i~  246 (272)
T PRK14236        177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQA------ARVSDYTAFMYMGKLV  246 (272)
T ss_pred             HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHH------HhhCCEEEEEECCEEE
Confidence            9999999988888888      77776777777666532 23566678988774      3679999999988763

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.69  E-value=1.8e-18  Score=148.66  Aligned_cols=176  Identities=18%  Similarity=0.168  Sum_probs=110.9

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc--cCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~--~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .+.++||++.|+.  .|.++++.+.+ |++++|+|+||||||||+++|+|+  ++            |..|+  ++|.++
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~------------~~~G~i~~~g~~~   73 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINK-GEIHAIMGPNGSGKSTLSKVIAGHPAYK------------ILEGDILFKGESI   73 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcC-CcEEEEECCCCCCHHHHHHHHcCCCcCc------------CCCceEEECCEEc
Confidence            4778899999975  79999999998 999999999999999999999997  34            34444  444433


Q ss_pred             eeeCHHHHHHH----h-hccc------hhhhheecc-------cccCcc----HHHHHHHH----------hcCCc-EEE
Q 043263          141 FFVSKEEFLQM----V-DKNE------LLEYALVYG-------DYKGIP----KKQIREYM----------AKGYD-IVL  187 (286)
Q Consensus       141 ~~~~~~~~~~~----i-~~~~------~~~~~~~~~-------~~~~~~----~~~i~~~~----------~~g~~-~v~  187 (286)
                      ...+.......    + +...      ..++.....       ......    .+.+.+++          ..... .++
T Consensus        74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  153 (252)
T CHL00131         74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFS  153 (252)
T ss_pred             ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCC
Confidence            22222111110    0 0000      011100000       000000    01112221          11122 377


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCC-CcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKN-FDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~  258 (286)
                      +|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ... ||+++++++
T Consensus       154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~------~~~~~d~i~~l~~  227 (252)
T CHL00131        154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL------DYIKPDYVHVMQN  227 (252)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HhhhCCEEEEEeC
Confidence            8899999999999989988888      7777777787777653  234667778987764      233 899999988


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       228 G~i  230 (252)
T CHL00131        228 GKI  230 (252)
T ss_pred             CEE
Confidence            875

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.69  E-value=3e-18  Score=148.79  Aligned_cols=181  Identities=18%  Similarity=0.137  Sum_probs=113.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++....       ..|..|+  ++|.++..
T Consensus        24 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~-------~~~~~G~i~~~g~~~~~   95 (271)
T PRK14238         24 VFDTQNLNLWYGEDHALKNINLDIHE-NEVTAIIGPSGCGKSTYIKTLNRMVELVP-------SVKTTGKILYRDQNIFD   95 (271)
T ss_pred             EEEEeeeEEEECCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccCCC-------CCCCceeEEECCEEccc
Confidence            4788999999975  78999999998 99999999999999999999999863000       0023444  44544321


Q ss_pred             --eCHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHH-------------HHhcCCcEEEEeCHHH
Q 043263          143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIRE-------------YMAKGYDIVLRVDIQG  193 (286)
Q Consensus       143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~-------------~~~~g~~~v~~~~~q~  193 (286)
                        .....++..+   .+.      ...++..+....++. .    .+.+.+             .+......+++|++|+
T Consensus        96 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr  175 (271)
T PRK14238         96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR  175 (271)
T ss_pred             ccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence              1111111111   111      111221110000111 1    111111             1223344577889999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i------~~~~d~i~~l~~G~i  244 (271)
T PRK14238        176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA------ARISDKTAFFLNGYV  244 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988988888      77777777777666542 23566678988874      367999999988876

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.69  E-value=4.9e-18  Score=146.94  Aligned_cols=177  Identities=17%  Similarity=0.145  Sum_probs=109.9

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .|..|+  ++|.++..
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~i~~   81 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPK-NQITAFIGPSGCGKSTILRCFNRLNDLIPG-------FRVEGKVTFHGKNLYA   81 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcC-CCEEEEECCCCCCHHHHHHHHHhhhcccCC-------CCCceEEEECCEEccc
Confidence            4778899999975  79999999998 999999999999999999999998641000       013343  44544321


Q ss_pred             --eCHHHHHHHh---hcc------chhhhheecccccCc---cHHHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263          143 --VSKEEFLQMV---DKN------ELLEYALVYGDYKGI---PKKQIREY-------------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 --~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~---~~~~i~~~-------------~~~g~~~v~~~~~q~v~  195 (286)
                        .....++..+   .+.      ...++..+.....+.   ..+.+.++             .......+++|++|++.
T Consensus        82 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  161 (264)
T PRK14243         82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC  161 (264)
T ss_pred             cccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHH
Confidence              1111222111   111      111211110000010   01111111             22233457788999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +||+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|++++
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~------~~~~d~v~~l~  224 (264)
T PRK14243        162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQA------ARVSDMTAFFN  224 (264)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEe
Confidence            99999988888888      77776777777776532 23666778988875      47899999887

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.69  E-value=1.7e-18  Score=162.81  Aligned_cols=176  Identities=16%  Similarity=0.180  Sum_probs=115.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++...
T Consensus         5 l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~i~~~   71 (501)
T PRK11288          5 LSFDGIGKTFPGVKALDDISFDCRA-GQVHALMGENGAGKSTLLKILSGNYQ------------PDAGSILIDGQEMRFA   71 (501)
T ss_pred             EEEeeeEEEECCEEEEeeeeEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEECCCC
Confidence            677899999975  79999999998 99999999999999999999999986            55665  455544222


Q ss_pred             CHH-HHHHHh---hcc-------chhhhheecc--cccC-ccH----HHHHHHHh---------cCCcEEEEeCHHHHHH
Q 043263          144 SKE-EFLQMV---DKN-------ELLEYALVYG--DYKG-IPK----KQIREYMA---------KGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~-~~~~~i---~~~-------~~~~~~~~~~--~~~~-~~~----~~i~~~~~---------~g~~~v~~~~~q~v~i  196 (286)
                      +.. .++..+   .+.       ...++..+..  ..++ ...    +.+.+.+.         .....+++|++|++.+
T Consensus        72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (501)
T PRK11288         72 STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEI  151 (501)
T ss_pred             CHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHH
Confidence            211 111111   111       1122211100  0011 111    12222221         1223466789999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++.
T Consensus       152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~------~~~~d~i~~l~~G~i~  219 (501)
T PRK11288        152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI------FALCDAITVFKDGRYV  219 (501)
T ss_pred             HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEEE
Confidence            9999988887777      7776677777666543  234677889988875      3679999999988763

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.69  E-value=4.8e-18  Score=142.94  Aligned_cols=168  Identities=11%  Similarity=0.098  Sum_probs=101.6

Q ss_pred             hHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           70 LRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        70 ~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +.|+.+.|+.   .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++...+
T Consensus         3 ~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~~~~~~   69 (218)
T cd03290           3 VTNGYFSWGSGLATLSNINIRIPT-GQLTMIVGQVGCGKSSLLLAILGEMQ------------TLEGKVHWSNKNESEPS   69 (218)
T ss_pred             eeeeEEecCCCCcceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCccccccc
Confidence            4566677753   68888888888 99999999999999999999999986            44444  4444322111


Q ss_pred             H----HHHHHH---hhcc------chhhhheecccccCccHHHHHHH---------Hh-----------cCCcEEEEeCH
Q 043263          145 K----EEFLQM---VDKN------ELLEYALVYGDYKGIPKKQIREY---------MA-----------KGYDIVLRVDI  191 (286)
Q Consensus       145 ~----~~~~~~---i~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~-----------~g~~~v~~~~~  191 (286)
                      .    ...+..   +.+.      ...++.... ..  ...+...+.         +.           .....+.+|+.
T Consensus        70 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~  146 (218)
T cd03290          70 FEATRSRNRYSVAYAAQKPWLLNATVEENITFG-SP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQR  146 (218)
T ss_pred             ccccchhhcceEEEEcCCCccccccHHHHHhhc-Cc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHH
Confidence            0    000110   0111      111111111 00  111111111         11           12345677899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHH-HH-H--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVER-LV-E--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~r-l~-~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.++ +. .  ..+.+...++|+.+.       ...||+++++++|+
T Consensus       147 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-------~~~~d~i~~l~~G~  218 (218)
T cd03290         147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-------LPHADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-------HhhCCEEEEecCCC
Confidence            999999999988888887      777666665552 22 1  123466777888776       34699999998774

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.69  E-value=2.5e-18  Score=144.30  Aligned_cols=172  Identities=13%  Similarity=0.089  Sum_probs=107.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++..
T Consensus        11 ~l~~~~l~~~~~~~~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~g~~i~~   77 (214)
T PRK13543         11 LLAAHALAFSRNEEPVFGPLDFHVDA-GEALLVQGDNGAGKTTLLRVLAGLLH------------VESGQIQIDGKTATR   77 (214)
T ss_pred             eEEEeeEEEecCCceeeecceEEECC-CCEEEEEcCCCCCHHHHHHHHhCCCC------------CCCeeEEECCEEccc
Confidence            4778899999875  78999999998 99999999999999999999999987            55554  44543321


Q ss_pred             eCHHHHHHHh-hcc------chhhhheecccccCcc-HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          143 VSKEEFLQMV-DKN------ELLEYALVYGDYKGIP-KKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       143 ~~~~~~~~~i-~~~------~~~~~~~~~~~~~~~~-~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      ......-..+ +..      ...++.......++.. .+.+.+.+         ......+++|++|++.++++++.+|+
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  157 (214)
T PRK13543         78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP  157 (214)
T ss_pred             hhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            0000000000 111      1111111110011111 11122221         22223566789999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ++|+      ||+.+.+.+.+.+.+.  .+.+...++|+++..      ...||++++++
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~------~~~~~~i~~l~  211 (214)
T PRK13543        158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAA------PPVRTRMLTLE  211 (214)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhh------hhhcceEEEEe
Confidence            8777      7776666776666532  233666778988875      47889988765

>PRK08356 hypothetical protein; Provisional

Probab=99.69  E-value=2.6e-15  Score=124.13  Aligned_cols=178  Identities=20%  Similarity=0.232  Sum_probs=121.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      ..+++|+||+||||||+++.|.. +. +. .+..+++.+..++.++.+++|.+...+..++....++++..+.++.||..
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g-~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KG-FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CC-Cc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            46899999999999999999965 43 32 45566666667777788888888888887777788888888888888754


Q ss_pred             H--HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHH-
Q 043263          172 K--KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATARE-  242 (286)
Q Consensus       172 ~--~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~-  242 (286)
                      .  +.+.+.+.....++++|- ..+..+..+-.....+|+++++ .+.+.+|+..|+..      +.+.+......... 
T Consensus        82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l  159 (195)
T PRK08356         82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKL  159 (195)
T ss_pred             HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhcCCEEEEEECC-HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHh
Confidence            2  222223333345666664 3344444443223578889987 68888999988654      33333332222221 


Q ss_pred             --HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          243 --EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       243 --~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                        ..+....||.+|+|+ ++++++.++|.+++...
T Consensus       160 ~~~~~~~~~aD~vI~N~-~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        160 YHTTKLKDKADFVIVNE-GTLEELRKKVEEILREL  193 (195)
T ss_pred             hhhhhHHHhCcEEEECC-CCHHHHHHHHHHHHHHh
Confidence              222346799999774 79999999999998765

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.69  E-value=8e-19  Score=152.52  Aligned_cols=173  Identities=16%  Similarity=0.199  Sum_probs=109.8

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +.++||++.|+ .  .++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         7 l~~~~l~~~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~   73 (272)
T PRK15056          7 IVVNDVTVTWRNGHTALRDASFTVPG-GSIAALVGVNGSGKSTLFKALMGFVR------------LASGKISILGQPTRQ   73 (272)
T ss_pred             EEEEeEEEEecCCcEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEhHH
Confidence            67788899885 2  78999999998 99999999999999999999999986            55555  45544310


Q ss_pred             eCHH-HHHHHhhcc-c-------hhhhheeccc-----ccCc----cHHHHHHH---------HhcCCcEEEEeCHHHHH
Q 043263          143 VSKE-EFLQMVDKN-E-------LLEYALVYGD-----YKGI----PKKQIREY---------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~~~~-~~~~~i~~~-~-------~~~~~~~~~~-----~~~~----~~~~i~~~---------~~~g~~~v~~~~~q~v~  195 (286)
                      .... .+. .+.+. .       .+.+....+.     ....    ..+.+.++         .......+++|++|++.
T Consensus        74 ~~~~~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~  152 (272)
T PRK15056         74 ALQKNLVA-YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF  152 (272)
T ss_pred             hhccceEE-EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH
Confidence            0000 000 00111 0       0111111110     0000    11122222         12233456778999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||++++. +|++
T Consensus       153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~------~~~~d~v~~~-~G~i  219 (272)
T PRK15056        153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV------TEFCDYTVMV-KGTV  219 (272)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEE-CCEE
Confidence            99999988888888      7777777777777653  234667778988764      3678998777 5654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.4e-18  Score=147.77  Aligned_cols=178  Identities=17%  Similarity=0.196  Sum_probs=111.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC--CCCC--cCCccee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM--RPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~--~~G~--~~g~~~~  141 (286)
                      ++++|+++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+.+..         ++  ..|+  ++|.++.
T Consensus         4 l~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---------~~~~~~G~i~~~g~~~~   73 (250)
T PRK14245          4 IDARDVNFWYGDFHALKGISMEIEE-KSVVAFIGPSGCGKSTFLRLFNRMNDLI---------PATRLEGEIRIDGRNIY   73 (250)
T ss_pred             EEEEEEEEEECCEeEEeeeeEEEeC-CCEEEEECCCCCCHHHHHHHHhhhhccc---------CCCCCceEEEECCEecc
Confidence            567788888875  68999999998 9999999999999999999999863100         01  2454  4555442


Q ss_pred             ee--CHHHHHHHh---hcc------chhhhheecccccCc-----cHHHHHHHH-------------hcCCcEEEEeCHH
Q 043263          142 FV--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-----PKKQIREYM-------------AKGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-----~~~~i~~~~-------------~~g~~~v~~~~~q  192 (286)
                      ..  +...++..+   .+.      ...++..+....++.     ..+.+.+++             ......+++|++|
T Consensus        74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  153 (250)
T PRK14245         74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ  153 (250)
T ss_pred             cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence            21  111112111   111      111111110000111     011122222             2223456788999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~------~~~~d~v~~l~~G~~  223 (250)
T PRK14245        154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQA------ARVSDKTAFFYMGEM  223 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HhhCCEEEEEECCEE
Confidence            99999999988888888      77777777777776542 23666778988874      367999999998865

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.69  E-value=2.9e-17  Score=144.02  Aligned_cols=173  Identities=17%  Similarity=0.132  Sum_probs=114.7

Q ss_pred             HHhHhHHHHhcc-------------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC
Q 043263           68 ELLRSLEASLGH-------------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE  134 (286)
Q Consensus        68 i~~~~v~~~~~~-------------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~  134 (286)
                      ++.++|..+|..             +++++++...+ |+.+||+|.|||||||+..+|.++++             ..|+
T Consensus       277 l~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~-gqTlGlVGESGSGKsTlG~allrL~~-------------s~G~  342 (534)
T COG4172         277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR-GQTLGLVGESGSGKSTLGLALLRLIP-------------SQGE  342 (534)
T ss_pred             EEecceEEEEecCCccccccchheEEeccceeEecC-CCeEEEEecCCCCcchHHHHHHhhcC-------------cCce
Confidence            556666666632             57788888887 99999999999999999999999974             3466


Q ss_pred             --cCCcceeeeCHHHHHHHh------hccch------------hhh-heecccccCccH----HHHHHHH----------
Q 043263          135 --VNGKDYFFVSKEEFLQMV------DKNEL------------LEY-ALVYGDYKGIPK----KQIREYM----------  179 (286)
Q Consensus       135 --~~g~~~~~~~~~~~~~~i------~~~~~------------~~~-~~~~~~~~~~~~----~~i~~~~----------  179 (286)
                        ++|+++...+..+++.+.      .|+.|            +.. ..++..  ..+.    +.+.+++          
T Consensus       343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~--~ls~~eR~~rv~~aL~EVGLDp~~r  420 (534)
T COG4172         343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP--KLSAAERDQRVIEALEEVGLDPATR  420 (534)
T ss_pred             EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC--CCCHHHHHHHHHHHHHHcCCChhHh
Confidence              678888777776655432      22222            111 111110  1121    1222222          


Q ss_pred             hcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHH----------HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263          180 AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEM----------ALVERLVERKTENREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       180 ~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~----------~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      ..-...+++|++||++|||+++-+|.+ |+||.|+-.          .+.+.|.++.+.+...|.|++...      ...
T Consensus       421 ~RYPhEFSGGQRQRIAIARAliLkP~~-i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv------rAl  493 (534)
T COG4172         421 NRYPHEFSGGQRQRIAIARALILKPEL-ILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV------RAL  493 (534)
T ss_pred             hcCCcccCcchhhHHHHHHHHhcCCcE-EEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH------HHh
Confidence            223356779999999999999955555 555555432          233445555556778889999886      478


Q ss_pred             CcEEEECCCCCHHH
Q 043263          250 FDYVVVNAEGKLDS  263 (286)
Q Consensus       250 ~d~viv~~~G~i~~  263 (286)
                      ||+|||+.+|++.|
T Consensus       494 ~~~viVm~~GkiVE  507 (534)
T COG4172         494 CHRVIVMRDGKIVE  507 (534)
T ss_pred             hceEEEEeCCEEee
Confidence            99999999998744

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.69  E-value=3.3e-18  Score=142.04  Aligned_cols=165  Identities=15%  Similarity=0.136  Sum_probs=102.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++|+++.|+.  .++++++.+.+ |++++|+|+|||||||++++|+|+++            |..|+  ++|.++.. 
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~v~~~g~~~~~-   67 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPA-GGLLHLKGSNGAGKTTLLKLIAGLLN------------PEKGEILFERQSIKK-   67 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeeEEECCCcccc-
Confidence            346778888865  78999999998 99999999999999999999999986            66665  56665432 


Q ss_pred             CHHHHHHHh---hcc-------chhhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          144 SKEEFLQMV---DKN-------ELLEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       144 ~~~~~~~~i---~~~-------~~~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      ....++..+   .+.       ...++.. ++.........+.+.+         ......+.+|+.|++.+|++++.+|
T Consensus        68 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p  146 (200)
T PRK13540         68 DLCTYQKQLCFVGHRSGINPYLTLRENCL-YDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA  146 (200)
T ss_pred             CHHHHHhheEEeccccccCcCCCHHHHHH-HHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence            112222211   111       1111111 1100000111222221         2222356778999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      +++|+      ||+.+.+.+.+.|.+.  .+.+...++|+...       ...||.-+
T Consensus       147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-------~~~~d~~~  197 (200)
T PRK13540        147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-------LNKADYEE  197 (200)
T ss_pred             CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-------ccccchhh
Confidence            88888      7776666666666542  23355566776655       45566543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.8e-18  Score=150.08  Aligned_cols=179  Identities=15%  Similarity=0.189  Sum_probs=113.4

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC--cceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .+.++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+..  ..         .|..|+  ++|.++
T Consensus        39 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~---------~~~~G~I~~~g~~i  108 (286)
T PRK14275         39 HVVAKNFSIYYGEFEAVKKVNADILS-KYVTAIIGPSGCGKSTFLRAINRMNDLIPS---------CHTTGALMFDGEDI  108 (286)
T ss_pred             EEEEeeeEEEECCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCC---------CCCceEEEECCEEh
Confidence            4788999999975  78999999998 99999999999999999999999742  00         013444  445433


Q ss_pred             eee--CHHHHHHHh---hcc------chhhhheecccccCc-c----HHHHHH-------------HHhcCCcEEEEeCH
Q 043263          141 FFV--SKEEFLQMV---DKN------ELLEYALVYGDYKGI-P----KKQIRE-------------YMAKGYDIVLRVDI  191 (286)
Q Consensus       141 ~~~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~-~----~~~i~~-------------~~~~g~~~v~~~~~  191 (286)
                      ...  ....++..+   .+.      ...++..+....++. .    .+.+.+             .+......+++|++
T Consensus       109 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~  188 (286)
T PRK14275        109 YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ  188 (286)
T ss_pred             hhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence            211  111111111   111      111111110000011 0    111111             12333455778899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~------~~~~d~i~~L~~G~i  259 (286)
T PRK14275        189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA------SRVSDYTMFFYEGVL  259 (286)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999999999988888888      77777777777776542 23566778988874      367999999998875

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.69  E-value=6.4e-18  Score=144.95  Aligned_cols=175  Identities=15%  Similarity=0.135  Sum_probs=107.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ++++||++.|+.  +++++++.+.+ |++++|+|+||||||||+++|+|+.  +            |..|+  ++|.++.
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------------~~~G~i~~~g~~~~   68 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRP-GEVHAIMGPNGSGKSTLSATLAGREDYE------------VTGGTVEFKGKDLL   68 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHcCCccCC------------CCceEEEECCCccc
Confidence            456788888875  78999999998 9999999999999999999999984  4            44444  4554443


Q ss_pred             eeCHHHHHH-Hh---hcc-chh------hhh-eecccc------cCcc----HHHHHHHHh---------cC-C-cEEEE
Q 043263          142 FVSKEEFLQ-MV---DKN-ELL------EYA-LVYGDY------KGIP----KKQIREYMA---------KG-Y-DIVLR  188 (286)
Q Consensus       142 ~~~~~~~~~-~i---~~~-~~~------~~~-~~~~~~------~~~~----~~~i~~~~~---------~g-~-~~v~~  188 (286)
                      ..+...... .+   .+. .+.      .+. ....+.      ....    .+.+.+.+.         .. . ..+++
T Consensus        69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~  148 (248)
T PRK09580         69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG  148 (248)
T ss_pred             cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCH
Confidence            222221110 00   011 000      000 000000      0001    111121111         01 1 14778


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCC-CcEEEECCCC
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKN-FDYVVVNAEG  259 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~G  259 (286)
                      |++|++.+|++++.+|+++|+      ||+.+...+.+.+.+.  .+.+...++|++...      ... +|+|+++++|
T Consensus       149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~------~~~~~d~i~~l~~g  222 (248)
T PRK09580        149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL------DYIKPDYVHVLYQG  222 (248)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HhhhCCEEEEEECC
Confidence            999999999999988888888      7777677777665543  233667778987763      233 8999998888


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       223 ~i  224 (248)
T PRK09580        223 RI  224 (248)
T ss_pred             eE
Confidence            76

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.68  E-value=4.5e-18  Score=141.34  Aligned_cols=166  Identities=13%  Similarity=0.111  Sum_probs=103.7

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++....
T Consensus         2 ~i~~l~~~~~~~~~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~   68 (201)
T cd03231           2 EADELTCERDGRALFSGLSFTLAA-GEALQVTGPNGSGKTTLLRILAGLSP------------PLAGRVLLNGGPLDFQR   68 (201)
T ss_pred             EEEEEEEEeCCceeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEeccccc
Confidence            45677888865  68899999998 99999999999999999999999986            55565  4555443211


Q ss_pred             HHHHHHHh----hccch------hhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          145 KEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       145 ~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                       ..++..+    ++..+      .++.......  ...+.+.+++         ......+.+|++|++.+|++++.+|+
T Consensus        69 -~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  145 (201)
T cd03231          69 -DSIARGLLYLGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP  145 (201)
T ss_pred             -HHhhhheEEeccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence             1122111    11111      1221111111  1222233322         12223466789999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      ++|+      ||+.+...+.+.|.+.  .+.+...++|+....      ...++++++.
T Consensus       146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~------~~~~~~~~~~  198 (201)
T cd03231         146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL------SEAGARELDL  198 (201)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh------hhccceeEec
Confidence            7777      6666666676666542  233566667765543      4678888765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.68  E-value=3.3e-18  Score=146.82  Aligned_cols=168  Identities=16%  Similarity=0.191  Sum_probs=106.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc-ceee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK-DYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~-~~~~  142 (286)
                      ++++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|. .+.+
T Consensus         5 l~~~~l~~~~~~~~vl~~vs~~i~~-Ge~~~I~G~NGsGKSTLl~~i~Gl~~------------p~~G~i~~~~~~~i~~   71 (251)
T PRK09544          5 VSLENVSVSFGQRRVLSDVSLELKP-GKILTLLGPNGAGKSTLVRVVLGLVA------------PDEGVIKRNGKLRIGY   71 (251)
T ss_pred             EEEeceEEEECCceEEEeEEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCccCEEE
Confidence            667888988875  78999999998 99999999999999999999999986            44443  2221 1221


Q ss_pred             eCHHH-HHHHhhccchhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE---
Q 043263          143 VSKEE-FLQMVDKNELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF---  209 (286)
Q Consensus       143 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il---  209 (286)
                      +..+. +...+. ....++....   .+...+.+.++         +......+++|++|++.+|++++.+|+++|+   
T Consensus        72 v~q~~~~~~~l~-~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP  147 (251)
T PRK09544         72 VPQKLYLDTTLP-LTVNRFLRLR---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP  147 (251)
T ss_pred             eccccccccccC-hhHHHHHhcc---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            11110 000000 0001110000   01111222222         2333455778999999999999988887777   


Q ss_pred             ---EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 ---LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 ---ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                         ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++
T Consensus       148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i------~~~~d~i~~l~~  196 (251)
T PRK09544        148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV------MAKTDEVLCLNH  196 (251)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEECC
Confidence               6776667776666542   234677779988875      367999998875

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=3.6e-18  Score=148.50  Aligned_cols=177  Identities=16%  Similarity=0.139  Sum_probs=111.2

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++|+++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|++.....       .+..|+  ++|.++..
T Consensus        20 ~l~~~nl~~~~~~~~~l~~vs~~i~~-Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~l~~   91 (274)
T PRK14265         20 VFEVEGVKVFYGGFLALVDVHLKIPA-KKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-------AKVEGRLLYRDRNIYD   91 (274)
T ss_pred             eEEEeeEEEEeCCeEEEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhcccccccC-------CCcCceEEECCEeccc
Confidence            5788999999976  79999999998 999999999999999999999998641000       012444  45544321


Q ss_pred             e--CHHHHHHHh---hcc------chhhhheecccccCc---cHHHHH-------------HHHhcCCcEEEEeCHHHHH
Q 043263          143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGI---PKKQIR-------------EYMAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~---~~~~i~-------------~~~~~g~~~v~~~~~q~v~  195 (286)
                      .  ....++..+   .+.      .+.++..........   ..+.+.             ..+......+.+|++|++.
T Consensus        92 ~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  171 (274)
T PRK14265         92 SQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC  171 (274)
T ss_pred             ccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence            1  111111111   111      111111110000000   011111             1122333456788999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +|++++.+|+++|+      ||+.+.+.+.+.|.+.. +.+...++|+++..      ...||++++++
T Consensus       172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~  234 (274)
T PRK14265        172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA------SRVADWTAFFN  234 (274)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEe
Confidence            99999988888888      78777777877776542 23566778988775      37899999996

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.68  E-value=4.9e-18  Score=141.73  Aligned_cols=166  Identities=13%  Similarity=0.119  Sum_probs=102.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|+  ++|.++.. 
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~-   68 (207)
T PRK13539          3 LEGEDLACVRGGRVLFSGLSFTLAA-GEALVLTGPNGSGKTTLLRLIAGLLP------------PAAGTIKLDGGDIDD-   68 (207)
T ss_pred             EEEEeEEEEECCeEEEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEeCcc-
Confidence            456788888875  78999999998 99999999999999999999999986            55555  45544321 


Q ss_pred             CHHHHHHHh----hccc------hhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          144 SKEEFLQMV----DKNE------LLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       144 ~~~~~~~~i----~~~~------~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                       .. ++..+    ++..      ..++.......++...+.+.+.         .......+++|++|++.+|++++.+|
T Consensus        69 -~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p  146 (207)
T PRK13539         69 -PD-VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR  146 (207)
T ss_pred             -hh-hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCC
Confidence             00 11111    1111      1111111111111111222222         12223457778999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          205 AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +++|+      ||+.+...+.+.|.+.  .+.+...++|++...       .. |+++...
T Consensus       147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~-------~~-~~~~~~~  199 (207)
T PRK13539        147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL-------PG-ARELDLG  199 (207)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh-------cc-CcEEeec
Confidence            77777      6666666666666542  233666678877763       33 7666543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.68  E-value=6.2e-18  Score=141.89  Aligned_cols=169  Identities=17%  Similarity=0.144  Sum_probs=105.9

Q ss_pred             hHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC----
Q 043263           72 SLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS----  144 (286)
Q Consensus        72 ~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~----  144 (286)
                      +|+++|+. .+ ++++.+.+  ++++|+|+||||||||+++|+|+++            |..|+  ++|.++....    
T Consensus         5 ~l~~~~~~~~~-~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~~~~   69 (214)
T cd03297           5 DIEKRLPDFTL-KIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEK------------PDGGTIVLNGTVLFDSRKKIN   69 (214)
T ss_pred             eeeEecCCeee-CceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEecccccchhh
Confidence            67778876 34 77777775  9999999999999999999999986            55565  4555432111    


Q ss_pred             HHHHHHHh---hcc-chhhhheecccc------cC--ccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          145 KEEFLQMV---DKN-ELLEYALVYGDY------KG--IPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       145 ~~~~~~~i---~~~-~~~~~~~~~~~~------~~--~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                      ....+..+   .+. .+........++      +.  ...+.+.+.         .......+++|++|++.+|++++.+
T Consensus        70 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  149 (214)
T cd03297          70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ  149 (214)
T ss_pred             hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence            11111111   111 111111111110      00  011122222         2233355778899999999999988


Q ss_pred             CcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          204 SAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       204 ~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++|+      ||+.+...+.+.+.+.   .+.+...++|+++..      ...||+++++++|++
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  210 (214)
T cd03297         150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA------EYLADRIVVMEDGRL  210 (214)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH------HHhcCEEEEEECCEE
Confidence            888888      7777777777766543   134667778988774      367999999998875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.68  E-value=5.2e-18  Score=140.63  Aligned_cols=156  Identities=17%  Similarity=0.142  Sum_probs=92.2

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++....
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~   68 (198)
T TIGR01189         2 AARNLACSRGERMLFEGLSFTLNA-GEALQVTGPNGIGKTTLLRILAGLLR------------PDSGEVRWNGTALAEQR   68 (198)
T ss_pred             EEEEEEEEECCEEEEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCEEcccch
Confidence            35677777765  68999999998 99999999999999999999999986            55555  4554432211


Q ss_pred             HHHHHHHh----hcc------chhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          145 KEEFLQMV----DKN------ELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       145 ~~~~~~~i----~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      . .++..+    ++.      ...++............+.+.++         +......+++|++|++.+|++++.+|+
T Consensus        69 ~-~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  147 (198)
T TIGR01189        69 D-EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP  147 (198)
T ss_pred             H-HhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            1 111110    111      11111111111111111112222         223334567789999999999998877


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHH
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIA  238 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~  238 (286)
                      ++|+      ||+.+...+.+.|.+.  .+.+...++|+..
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL  188 (198)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence            7777      5555555665555542  2224555566443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.68  E-value=1.8e-17  Score=140.60  Aligned_cols=164  Identities=14%  Similarity=0.071  Sum_probs=100.0

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---hhcc
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---VDKN  155 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i~~~  155 (286)
                      ++++++.+.+ |++++|+||||||||||+++|+|++....        .+..|+  ++|.++...  ......   +.+.
T Consensus         2 l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--------~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~   70 (230)
T TIGR02770         2 VQDLNLSLKR-GEVLALVGESGSGKSLTCLAILGLLPPGL--------TQTSGEILLDGRPLLPL--SIRGRHIATIMQN   70 (230)
T ss_pred             ccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCcc--------CccccEEEECCEechhh--hhhhheeEEEecC
Confidence            5677777777 99999999999999999999999986200        014555  556543211  000000   1111


Q ss_pred             c---hh------hhheecccccCc-c---HHHHHHH------------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          156 E---LL------EYALVYGDYKGI-P---KKQIREY------------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       156 ~---~~------~~~~~~~~~~~~-~---~~~i~~~------------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                      .   +.      ++........+. .   .+.+.+.            .......+++|++|++.+|++++.+|+++|+ 
T Consensus        71 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD  150 (230)
T TIGR02770        71 PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD  150 (230)
T ss_pred             chhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            1   10      110000000111 1   1112222            1223345778899999999999988888777 


Q ss_pred             -----EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 -----LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                           ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~------~~~~d~i~~l~~G~i  204 (230)
T TIGR02770       151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVV------ARIADEVAVMDDGRI  204 (230)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence                 7776677777766653   234667778988874      367999999998875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.68  E-value=9.4e-18  Score=158.24  Aligned_cols=177  Identities=12%  Similarity=0.127  Sum_probs=116.9

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .++++|+++.|+..++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++...+
T Consensus       265 ~l~~~~l~~~~~~~l~~isl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~------------p~~G~I~~~g~~~~~~~  331 (510)
T PRK09700        265 VFEVRNVTSRDRKKVRDISFSVCR-GEILGFAGLVGSGRTELMNCLFGVDK------------RAGGEIRLNGKDISPRS  331 (510)
T ss_pred             EEEEeCccccCCCcccceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCc------------CCCCeEEECCEECCCCC
Confidence            478999998876689999999998 99999999999999999999999986            55665  4555442211


Q ss_pred             H-HHHHHH---hhcc----------chhhhheecccc----c----Cc-c----HHHHHHHHhc----------CCcEEE
Q 043263          145 K-EEFLQM---VDKN----------ELLEYALVYGDY----K----GI-P----KKQIREYMAK----------GYDIVL  187 (286)
Q Consensus       145 ~-~~~~~~---i~~~----------~~~~~~~~~~~~----~----~~-~----~~~i~~~~~~----------g~~~v~  187 (286)
                      . ..++..   +.+.          ...++.......    +    +. .    .+.+.+.++.          ....++
T Consensus       332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  411 (510)
T PRK09700        332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELS  411 (510)
T ss_pred             HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCC
Confidence            1 111111   1121          112221110000    0    10 1    1112222211          123567


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      +|++|++.+|++++.+|+++|+      ||+.+.+.+.+.|.+.  .+.+...++|++...      ...||+++++++|
T Consensus       412 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~------~~~~d~i~~l~~G  485 (510)
T PRK09700        412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI------ITVCDRIAVFCEG  485 (510)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HhhCCEEEEEECC
Confidence            8999999999999988888888      8887777777766542  234777789988765      4789999999988


Q ss_pred             CHH
Q 043263          260 KLD  262 (286)
Q Consensus       260 ~i~  262 (286)
                      ++.
T Consensus       486 ~i~  488 (510)
T PRK09700        486 RLT  488 (510)
T ss_pred             EEE
Confidence            763

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.68  E-value=7.1e-17  Score=127.59  Aligned_cols=178  Identities=19%  Similarity=0.181  Sum_probs=106.3

Q ss_pred             HHHhHhHHHHhcc-----------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-
Q 043263           67 IELLRSLEASLGH-----------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-  134 (286)
Q Consensus        67 ~i~~~~v~~~~~~-----------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-  134 (286)
                      -++++|++++|..           +++.+++.... |+.++|+|.||||||||+++|+|..+            |.+|+ 
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~-~QTlaiIG~NGSGKSTLakMlaGmi~------------PTsG~i   70 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLRE-GQTLAIIGENGSGKSTLAKMLAGMIE------------PTSGEI   70 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecC-CcEEEEEccCCCcHhHHHHHHhcccC------------CCCceE
Confidence            3677888877742           46677788887 99999999999999999999999987            88888 


Q ss_pred             -cCCcceeeeCHHHHHH---Hhhccc---hh---hhheeccc-cc---Ccc----HHHHHHHH------hcCC----cEE
Q 043263          135 -VNGKDYFFVSKEEFLQ---MVDKNE---LL---EYALVYGD-YK---GIP----KKQIREYM------AKGY----DIV  186 (286)
Q Consensus       135 -~~g~~~~~~~~~~~~~---~i~~~~---~~---~~~~~~~~-~~---~~~----~~~i~~~~------~~g~----~~v  186 (286)
                       ++|+...+-+.....+   ++.++.   |-   .-....+. +.   ...    .+.+.+-+      ++..    ..+
T Consensus        71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~l  150 (267)
T COG4167          71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHML  150 (267)
T ss_pred             EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhc
Confidence             6777665544332222   222211   10   00011110 00   011    11222221      2221    234


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVER---LVERKTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~r---l~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      .-+++||+++|||++-.|.++|.      ||..-...+...   |.++-+.+.+-+...+-..      ...+|.|+|++
T Consensus       151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~i------KHi~D~viVM~  224 (267)
T COG4167         151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI------KHISDQVLVMH  224 (267)
T ss_pred             CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHh------hhhcccEEEEe
Confidence            46799999999999988888887      565544444332   2233333333344444332      25799999999


Q ss_pred             CCCHHH
Q 043263          258 EGKLDS  263 (286)
Q Consensus       258 ~G~i~~  263 (286)
                      +|++.|
T Consensus       225 EG~vvE  230 (267)
T COG4167         225 EGEVVE  230 (267)
T ss_pred             cCceee
Confidence            997644

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.68  E-value=7.2e-18  Score=162.19  Aligned_cols=176  Identities=18%  Similarity=0.113  Sum_probs=117.0

Q ss_pred             HHHhHhHHHHhc-------------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCC
Q 043263           67 IELLRSLEASLG-------------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPG  133 (286)
Q Consensus        67 ~i~~~~v~~~~~-------------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G  133 (286)
                      .++++||++.|+             .+++++++.+.+ |++++|+|+||||||||+++|+|++.            |..|
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~lvG~nGsGKSTLlk~i~Gl~~------------p~~G  379 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWP-GETLSLVGESGSGKSTTGRALLRLVE------------SQGG  379 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCc
Confidence            478999999995             168999999998 99999999999999999999999986            5556


Q ss_pred             C--cCCcceeeeCHHHH---HHH---hhccc---hhhhheeccc------ccCc-cH----HHHHHH----------Hhc
Q 043263          134 E--VNGKDYFFVSKEEF---LQM---VDKNE---LLEYALVYGD------YKGI-PK----KQIREY----------MAK  181 (286)
Q Consensus       134 ~--~~g~~~~~~~~~~~---~~~---i~~~~---~~~~~~~~~~------~~~~-~~----~~i~~~----------~~~  181 (286)
                      +  ++|.++...+....   +..   +.|+.   +.....+..+      .++. ..    +.+.+.          ...
T Consensus       380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~  459 (623)
T PRK10261        380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR  459 (623)
T ss_pred             EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC
Confidence            5  55655433322211   111   12211   1111011100      0111 11    122222          222


Q ss_pred             CCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          182 GYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       182 g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      ....+++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+   ..+.+...++|+++..      ...||+
T Consensus       460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v------~~~~dr  533 (623)
T PRK10261        460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV------ERISHR  533 (623)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCE
Confidence            3356778999999999999988888888      777777777776654   2244778889998875      367999


Q ss_pred             EEECCCCCH
Q 043263          253 VVVNAEGKL  261 (286)
Q Consensus       253 viv~~~G~i  261 (286)
                      |+++++|++
T Consensus       534 i~vl~~G~i  542 (623)
T PRK10261        534 VAVMYLGQI  542 (623)
T ss_pred             EEEEECCEE
Confidence            999988865

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.68  E-value=5.3e-18  Score=160.29  Aligned_cols=186  Identities=15%  Similarity=0.116  Sum_probs=111.5

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--Ccceeeeeecc----------cCCCCCC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATS----------RPMRPGE  134 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~----------r~~~~G~  134 (286)
                      +++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++  ....+.+....          ..+..|.
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~   80 (520)
T TIGR03269         2 EVKNLTKKFDGKEVLKNISFTIEE-GEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE   80 (520)
T ss_pred             EEEEEEEEECCeEeeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence            46788888865  78999999998 9999999999999999999999985  43344333210          0000010


Q ss_pred             ---cCCccee-------eeCHH---HHHHHh---hcc--ch------hhhheecccccCccH----HHHHHH--------
Q 043263          135 ---VNGKDYF-------FVSKE---EFLQMV---DKN--EL------LEYALVYGDYKGIPK----KQIREY--------  178 (286)
Q Consensus       135 ---~~g~~~~-------~~~~~---~~~~~i---~~~--~~------~~~~~~~~~~~~~~~----~~i~~~--------  178 (286)
                         ++|.++.       .....   .++..+   .+.  .+      .++..+....++...    +.+.+.        
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  160 (520)
T TIGR03269        81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH  160 (520)
T ss_pred             ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence               0122110       00111   111111   111  11      111111000111111    112222        


Q ss_pred             -HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccC
Q 043263          179 -MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       179 -~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                       +......+++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ..
T Consensus       161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~------~~  234 (520)
T TIGR03269       161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI------ED  234 (520)
T ss_pred             hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------HH
Confidence             2334456788999999999999988888888      7777777776555442   234677789998875      36


Q ss_pred             CCcEEEECCCCCH
Q 043263          249 NFDYVVVNAEGKL  261 (286)
Q Consensus       249 ~~d~viv~~~G~i  261 (286)
                      .||+|+++++|++
T Consensus       235 ~~d~i~~l~~G~i  247 (520)
T TIGR03269       235 LSDKAIWLENGEI  247 (520)
T ss_pred             hcCEEEEEeCCEE
Confidence            7999999998875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=6.4e-18  Score=160.05  Aligned_cols=177  Identities=12%  Similarity=0.099  Sum_probs=115.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceeee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFFV  143 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~~  143 (286)
                      .++++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++....+.+.          ++|. .+.++
T Consensus       319 ~l~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~----------~~~~~~i~~~  387 (530)
T PRK15064        319 ALEVENLTKGFDNGPLFKNLNLLLEA-GERLAIIGENGVGKTTLLRTLVGELEPDSGTVK----------WSENANIGYY  387 (530)
T ss_pred             eEEEEeeEEeeCCceeecCcEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE----------ECCceEEEEE
Confidence            5889999999975  78999999998 999999999999999999999999863333322          2221 12222


Q ss_pred             CHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF----  209 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il----  209 (286)
                      .+.............++...+.. .....+.+.+.          .......+++|++|++.+|++++.+|+++|+    
T Consensus       388 ~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt  466 (530)
T PRK15064        388 AQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT  466 (530)
T ss_pred             cccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            11100000000011111111000 00111112221          2334466778999999999999988888888    


Q ss_pred             --EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          210 --LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       210 --ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                        ||+.+.+.+.+.|.+.++ +...++|+++..      ...||+|+++++|.+.
T Consensus       467 ~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~~------~~~~d~i~~l~~g~i~  514 (530)
T PRK15064        467 NHMDMESIESLNMALEKYEG-TLIFVSHDREFV------SSLATRIIEITPDGVV  514 (530)
T ss_pred             CCCCHHHHHHHHHHHHHCCC-EEEEEeCCHHHH------HHhCCEEEEEECCeEE
Confidence              787777788887777644 777789988875      3679999999888764

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=4.1e-18  Score=146.53  Aligned_cols=180  Identities=16%  Similarity=0.149  Sum_probs=110.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++||++.|+.  .+.++++.+.+ |++++|+|+||||||||+++|+|+.+....       .+.+|+  ++|.++...
T Consensus         6 l~~~~l~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~-------~~~~G~i~~~g~~~~~~   77 (252)
T PRK14255          6 ITSSDVHLFYGKFEALKGIDLDFNQ-NEITALIGPSGCGKSTYLRTLNRMNDLIPG-------VTITGNVSLRGQNIYAP   77 (252)
T ss_pred             EEEEeEEEEECCeeEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCC-------CCcccEEEEcCEEcccc
Confidence            677899999975  79999999998 999999999999999999999997530000       002343  344333210


Q ss_pred             --CHHHHHHHh----hcc-----chhhhheecccccCc-c----HHHHH-------------HHHhcCCcEEEEeCHHHH
Q 043263          144 --SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-P----KKQIR-------------EYMAKGYDIVLRVDIQGA  194 (286)
Q Consensus       144 --~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~----~~~i~-------------~~~~~g~~~v~~~~~q~v  194 (286)
                        ....+...+    ++.     ...++..+.....+. .    .+.+.             .........+++|++|++
T Consensus        78 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv  157 (252)
T PRK14255         78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV  157 (252)
T ss_pred             cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence              011111100    110     111111110000010 0    01111             112333455777899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|+++++|++
T Consensus       158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~------~~~~d~i~~l~~G~i  225 (252)
T PRK14255        158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA------SRISDKTAFFLTGNL  225 (252)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            999999988888887      77776777777776542 23667778988874      367999999998876

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=4.4e-18  Score=146.92  Aligned_cols=175  Identities=15%  Similarity=0.136  Sum_probs=109.6

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC--CCCC--cCCcce
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM--RPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~--~~G~--~~g~~~  140 (286)
                      .+.++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+++...         |  ..|+  ++|.++
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~---------~~~~~G~i~~~g~~i   76 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYR-NKVTAIIGPSGCGKSTFIKTLNRISELEG---------PVKVEGVVDFFGQNI   76 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcCccc---------CCccceEEEECCEec
Confidence            4678899999975  78999999998 99999999999999999999999875100         0  2343  455443


Q ss_pred             ee--eCHHHHHHHh----hcc-----chhhhheecccccC-cc----HHHHHHH-------------HhcCCcEEEEeCH
Q 043263          141 FF--VSKEEFLQMV----DKN-----ELLEYALVYGDYKG-IP----KKQIREY-------------MAKGYDIVLRVDI  191 (286)
Q Consensus       141 ~~--~~~~~~~~~i----~~~-----~~~~~~~~~~~~~~-~~----~~~i~~~-------------~~~g~~~v~~~~~  191 (286)
                      ..  .....++..+    ++.     ...++........+ ..    .+.+.+.             +......+++|+.
T Consensus        77 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  156 (259)
T PRK14260         77 YDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ  156 (259)
T ss_pred             cccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence            21  1111111111    111     11111111000000 01    1111121             2223345667899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      |++.+||+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||++++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i------~~~~d~i~~l~  223 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA------TRVSDFTAFFS  223 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcCeEEEEe
Confidence            999999999988888877      77776777777776532 23666778988875      46899999886

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.67  E-value=4.7e-18  Score=159.92  Aligned_cols=177  Identities=12%  Similarity=0.138  Sum_probs=111.8

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|+++..          |.+|+  ++|.++...
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~-Ge~~~liG~nGsGKSTLl~~i~G~~~~~----------~~~G~i~~~g~~~~~~   70 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRP-GECVGLCGENGAGKSTLMKILSGVYPHG----------TWDGEIYWSGSPLKAS   70 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCC----------CCCeEEEECCEECCCC
Confidence            456788888875  68999999998 9999999999999999999999987510          13454  455444322


Q ss_pred             CHHHH-HHH---hhcc-------chhhhheeccccc--C--ccH----HHHHHHHh----------cCCcEEEEeCHHHH
Q 043263          144 SKEEF-LQM---VDKN-------ELLEYALVYGDYK--G--IPK----KQIREYMA----------KGYDIVLRVDIQGA  194 (286)
Q Consensus       144 ~~~~~-~~~---i~~~-------~~~~~~~~~~~~~--~--~~~----~~i~~~~~----------~g~~~v~~~~~q~v  194 (286)
                      +.... +..   +.+.       ...++..+....+  +  ...    +.+.+.+.          .....+++|++|++
T Consensus        71 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  150 (500)
T TIGR02633        71 NIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV  150 (500)
T ss_pred             CHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence            22111 110   1111       1112111100000  0  111    12222221          11235678899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~------~~~~d~i~~l~~G~i  219 (500)
T TIGR02633       151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV------KAVCDTICVIRDGQH  219 (500)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH------HHhCCEEEEEeCCeE
Confidence            999999988887777      7777677776665542  233677789988875      367999999998875

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=6.9e-18  Score=146.17  Aligned_cols=181  Identities=16%  Similarity=0.157  Sum_probs=111.5

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++|+++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+.....+.       +.+|+  ++|.++..
T Consensus        16 ~l~~~~l~~~~~~~~vl~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~-------~~sG~i~~~g~~~~~   87 (265)
T PRK14252         16 KSEVNKLNFYYGGYQALKNINMMVHE-KQVTALIGPSGCGKSTFLRCFNRMHDLYPGN-------HYEGEIILHPDNVNI   87 (265)
T ss_pred             eEEEEEEEEEECCeeeeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcccCCCCCC-------CcccEEEEcCccccc
Confidence            4788999999975  79999999998 9999999999999999999999986410000       02343  33433210


Q ss_pred             ----eCHHHHHHHh---hcc------chhhhheecccccCcc-----HHHHHHH-------------HhcCCcEEEEeCH
Q 043263          143 ----VSKEEFLQMV---DKN------ELLEYALVYGDYKGIP-----KKQIREY-------------MAKGYDIVLRVDI  191 (286)
Q Consensus       143 ----~~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~-----~~~i~~~-------------~~~g~~~v~~~~~  191 (286)
                          .....++..+   .+.      ...++..+.....+..     .+.+.++             +......+++|+.
T Consensus        88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  167 (265)
T PRK14252         88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ  167 (265)
T ss_pred             cccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence                0111111111   111      1111111100000110     1111222             1222344667899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++.++++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+++++++|++
T Consensus       168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~------~~~~d~i~~l~~G~i  238 (265)
T PRK14252        168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA------ARVSDYTAYMYMGEL  238 (265)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            999999999988888887      77766777767666532 23566778988874      368999999998875

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.67  E-value=6.1e-17  Score=138.49  Aligned_cols=158  Identities=13%  Similarity=0.085  Sum_probs=96.8

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHhhccchh
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMVDKNELL  158 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i~~~~~~  158 (286)
                      |+..+..+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|..+.+..+...  ........
T Consensus        15 l~~~~~~i~~-Ge~~~i~G~NGsGKSTLlk~L~G~~~------------p~~G~i~~~g~~i~~~~q~~~--~~~~~tv~   79 (246)
T cd03237          15 LEVEGGSISE-SEVIGILGPNGIGKTTFIKMLAGVLK------------PDEGDIEIELDTVSYKPQYIK--ADYEGTVR   79 (246)
T ss_pred             EEEecCCcCC-CCEEEEECCCCCCHHHHHHHHhCCCc------------CCCCeEEECCceEEEeccccc--CCCCCCHH
Confidence            4444555666 99999999999999999999999986            56665  45544433322110  00001111


Q ss_pred             hhheecccccCccH---HH------HHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH
Q 043263          159 EYALVYGDYKGIPK---KQ------IREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV  223 (286)
Q Consensus       159 ~~~~~~~~~~~~~~---~~------i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~  223 (286)
                      ++............   .+      +...+......+++|++|++++|++++.+|+++|+      ||+.+...+.+.|.
T Consensus        80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~  159 (246)
T cd03237          80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR  159 (246)
T ss_pred             HHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11100000000000   01      11123334456788999999999999988888888      77776666666555


Q ss_pred             Hh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          224 ER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       224 ~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      +.   .+.+...++|++...      ...||+|++++++
T Consensus       160 ~~~~~~~~tiiivsHd~~~~------~~~~d~i~~l~~~  192 (246)
T cd03237         160 RFAENNEKTAFVVEHDIIMI------DYLADRLIVFEGE  192 (246)
T ss_pred             HHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEcCC
Confidence            42   244777889988874      3579999998753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.67  E-value=7.9e-17  Score=130.44  Aligned_cols=163  Identities=15%  Similarity=0.245  Sum_probs=113.0

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---hhc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---VDK  154 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i~~  154 (286)
                      ++.++++.++. |++|.|+|.|||||||+++.|+|.+.            |+.|+  ++|.|+...+...-...   +.|
T Consensus        21 ~l~~~sL~I~~-g~FvtViGsNGAGKSTlln~iaG~l~------------~t~G~I~Idg~dVtk~~~~~RA~~larVfQ   87 (263)
T COG1101          21 ALNGLSLEIAE-GDFVTVIGSNGAGKSTLLNAIAGDLK------------PTSGQILIDGVDVTKKSVAKRANLLARVFQ   87 (263)
T ss_pred             HHhcCceeecC-CceEEEEcCCCccHHHHHHHhhCccc------------cCCceEEECceecccCCHHHHhhHHHHHhc
Confidence            57888888887 99999999999999999999999886            78887  89999877765543332   222


Q ss_pred             cch--------hhhheeccc----ccCccH-------HH-----------HHHHHhcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          155 NEL--------LEYALVYGD----YKGIPK-------KQ-----------IREYMAKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       155 ~~~--------~~~~~~~~~----~~~~~~-------~~-----------i~~~~~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      +..        ++.+...+.    .++...       +.           ++..+......+++||+|.+.++-+.+..|
T Consensus        88 dp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~p  167 (263)
T COG1101          88 DPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPP  167 (263)
T ss_pred             chhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCC
Confidence            221        222222111    112111       11           112234445667899999999999998666


Q ss_pred             cEEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          205 AVFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .++++      |||...+.+++   ++.+....|..+|+|.+..+      +.+.+|.|++++|+|
T Consensus       168 kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A------l~yG~RlImLh~G~I  227 (263)
T COG1101         168 KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA------LDYGNRLIMLHSGKI  227 (263)
T ss_pred             cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH------HhhCCeEEEEeCCeE
Confidence            66666      77766555544   44455556888999999988      689999999999875

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=5.3e-18  Score=145.73  Aligned_cols=180  Identities=16%  Similarity=0.119  Sum_probs=109.7

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+......       .|..|+  ++|.++....
T Consensus         7 ~~~~l~~~~~~~~~l~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~-------~~~~G~i~~~g~~i~~~~   78 (251)
T PRK14244          7 SVKNLNLWYGSKQILFDINLDIYK-REVTAFIGPSGCGKSTFLRCFNRMNDFVPN-------CKVKGELDIDGIDVYSVD   78 (251)
T ss_pred             EeeeEEEEECCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccCCC-------CCcceEEEECCEehHhcc
Confidence            46778888864  68999999998 999999999999999999999998631000       012343  4444332111


Q ss_pred             --HHHHHHHh---hcc------chhhhheecccccCc------cHHHHHHHHh-------------cCCcEEEEeCHHHH
Q 043263          145 --KEEFLQMV---DKN------ELLEYALVYGDYKGI------PKKQIREYMA-------------KGYDIVLRVDIQGA  194 (286)
Q Consensus       145 --~~~~~~~i---~~~------~~~~~~~~~~~~~~~------~~~~i~~~~~-------------~g~~~v~~~~~q~v  194 (286)
                        ...++..+   .+.      ...++..+.....+.      ..+.+.++++             .....+.+|++|++
T Consensus        79 ~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv  158 (251)
T PRK14244         79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL  158 (251)
T ss_pred             cchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence              01111111   111      111111110000010      0111222211             22334667899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      .+|++++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|++...      ...||+|+++++|++.
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~------~~~~d~i~~l~~G~i~  227 (251)
T PRK14244        159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQA------KKVSDRVAFFQSGRIV  227 (251)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HhhcCEEEEEECCEEE
Confidence            999999988888888      77776777777766532 34667779988874      3679999999998763

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.67  E-value=1.6e-17  Score=160.66  Aligned_cols=170  Identities=15%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             hHHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCC-ccee
Q 043263           66 KIELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNG-KDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g-~~~~  141 (286)
                      ..++++||++.|+ +  .++++++.+++ |++++|+||||||||||+++|+|+++...+.+.          +++ ..+.
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~-Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~----------~~~~~~i~  518 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPS-GNHLLICGPNGCGKSSLFRILGELWPVYGGRLT----------KPAKGKLF  518 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe----------ecCCCcEE
Confidence            3588999999994 2  79999999998 999999999999999999999999873333322          111 1111


Q ss_pred             eeCHHHHHHHhhccchhhhheeccc-----ccCccHHHHHHHH---------h--cC-------CcEEEEeCHHHHHHHH
Q 043263          142 FVSKEEFLQMVDKNELLEYALVYGD-----YKGIPKKQIREYM---------A--KG-------YDIVLRVDIQGARTLR  198 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~i~~~~---------~--~g-------~~~v~~~~~q~v~iar  198 (286)
                      ++.++.   .+..+...++..+...     ..+...+.+.+++         .  .|       ...+++|++||+++||
T Consensus       519 ~v~Q~~---~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR  595 (659)
T TIGR00954       519 YVPQRP---YMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR  595 (659)
T ss_pred             EECCCC---CCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence            111110   0000111111111000     0011122222221         1  11       1357789999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +++.+|+++|+      ||+.+++.+.+.+.+. +.+...++|+++.       ...||++++++
T Consensus       596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~~-~~tvI~isH~~~~-------~~~~d~il~l~  652 (659)
T TIGR00954       596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREF-GITLFSVSHRKSL-------WKYHEYLLYMD  652 (659)
T ss_pred             HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEeCchHH-------HHhCCEEEEEe
Confidence            99999998888      7877777777777765 4478888999987       47899999886

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.66  E-value=3.1e-18  Score=141.65  Aligned_cols=165  Identities=12%  Similarity=0.086  Sum_probs=96.4

Q ss_pred             HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +.++|+++.|+. .+.++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++....
T Consensus         2 l~~~~l~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~i~~~~   68 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFDLSITFLP-SAITYIKGANGCGKSSLLRMIAGIMQ------------PSSGNIYYKNCNINNIA   68 (195)
T ss_pred             eEEEEeeEEECCcEEEEEEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCcccChhh
Confidence            345677778765 44458888888 99999999999999999999999986            55555  4555432111


Q ss_pred             HHHHHHHhhcc------chhhhheecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263          145 KEEFLQMVDKN------ELLEYALVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF  209 (286)
Q Consensus       145 ~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il  209 (286)
                      ........+..      ...++..+....++ ..+.+.+.         .......+.+|++|++.++++++.+|+++|+
T Consensus        69 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lll  147 (195)
T PRK13541         69 KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL  147 (195)
T ss_pred             hhhEEeccCCcCCCccCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            00000000111      11111111111111 11122222         2223345678899999999999988887777


Q ss_pred             ------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          210 ------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       210 ------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                            +|+.+...+.+.+..  ..+.+...++|+...       +..+|.|
T Consensus       148 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-------i~~~~~~  192 (195)
T PRK13541        148 DEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-------IKSAQIL  192 (195)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-------cchhhee
Confidence                  666666666665542  122355556776665       4556554

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=1.1e-17  Score=146.12  Aligned_cols=181  Identities=17%  Similarity=0.190  Sum_probs=112.1

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  .|+++++.+.+ |++++|+|+||||||||+++|+|++....       ..|..|+  ++|.++..
T Consensus        39 ~l~i~~l~~~~~~~~il~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-------~~p~~G~I~i~G~~i~~  110 (285)
T PRK14254         39 VIEARDLNVFYGDEQALDDVSMDIPE-NQVTAMIGPSGCGKSTFLRCINRMNDLID-------AARVEGELTFRGKNVYD  110 (285)
T ss_pred             eEEEEEEEEEECCEeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCccc-------CCCCceEEEECCEEccc
Confidence            4788999999975  79999999998 99999999999999999999999874100       0023343  44443321


Q ss_pred             e--CHHHHHHHh---hcc------chhhhheecccccCcc---HHHHHHH-------------HhcCCcEEEEeCHHHHH
Q 043263          143 V--SKEEFLQMV---DKN------ELLEYALVYGDYKGIP---KKQIREY-------------MAKGYDIVLRVDIQGAR  195 (286)
Q Consensus       143 ~--~~~~~~~~i---~~~------~~~~~~~~~~~~~~~~---~~~i~~~-------------~~~g~~~v~~~~~q~v~  195 (286)
                      .  ....++..+   .+.      ...++..+.....+..   .+.+.++             +......+++|++|++.
T Consensus       111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~  190 (285)
T PRK14254        111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC  190 (285)
T ss_pred             cccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence            1  111111111   111      1111111100000111   1112221             23334567789999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEE-ECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVV-VNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~vi-v~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.. ..+...++|++...      ...||+++ ++++|++
T Consensus       191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i------~~~~dri~v~l~~G~i  258 (285)
T PRK14254        191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA------ARISDKTAVFLTGGEL  258 (285)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HhhcCEEEEEeeCCEE
Confidence            99999988988888      77777777777776542 23666778988875      36799864 5577765

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=1e-17  Score=161.38  Aligned_cols=173  Identities=16%  Similarity=0.166  Sum_probs=115.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC-Cccee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN-GKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~-g~~~~  141 (286)
                      .+.++||++.|+.  +|.++++.+.+ |++++|+||||||||||+++|+|++.            |.+|+  ++ +..+.
T Consensus       312 ~l~~~~l~~~y~~~~il~~isl~i~~-Ge~~~l~G~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~~~~ig  378 (638)
T PRK10636        312 LLKMEKVSAGYGDRIILDSIKLNLVP-GSRIGLLGRNGAGKSTLIKLLAGELA------------PVSGEIGLAKGIKLG  378 (638)
T ss_pred             eEEEEeeEEEeCCeeeeccceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEECCCEEEE
Confidence            5889999999986  78999999998 99999999999999999999999986            55555  21 22222


Q ss_pred             eeCHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263          142 FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF--  209 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il--  209 (286)
                      ++.+.....+.......++.....  .......+...          .......+++|++||+.+|++++..|+++|+  
T Consensus       379 y~~Q~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE  456 (638)
T PRK10636        379 YFAQHQLEFLRADESPLQHLARLA--PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE  456 (638)
T ss_pred             EecCcchhhCCccchHHHHHHHhC--chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            222211100000011111110000  00111122222          1223345778999999999999988888888  


Q ss_pred             ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                          ||+.+...+.+.|.+..+ +...++|++...      ...||+|+++++|.+
T Consensus       457 Pt~~LD~~~~~~l~~~L~~~~g-tvi~vSHd~~~~------~~~~d~i~~l~~G~i  505 (638)
T PRK10636        457 PTNHLDLDMRQALTEALIDFEG-ALVVVSHDRHLL------RSTTDDLYLVHDGKV  505 (638)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence                888878888888877654 777889988764      367999999988865

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.66  E-value=8.5e-18  Score=175.32  Aligned_cols=176  Identities=16%  Similarity=0.187  Sum_probs=121.6

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||++.|+.    +++++++.+.+ |+++||+|||||||||++++|+|+..            |+.|+  ++|.+
T Consensus      1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~-GEi~gLLG~NGAGKTTLlkmL~Gll~------------ptsG~I~i~G~~ 2002 (2272)
T TIGR01257      1936 DILRLNELTKVYSGTSSPAVDRLCVGVRP-GECFGLLGVNGAGKTTTFKMLTGDTT------------VTSGDATVAGKS 2002 (2272)
T ss_pred             ceEEEEEEEEEECCCCceEEEeeEEEEcC-CcEEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEECCEE
Confidence            34788999999973    79999999998 99999999999999999999999986            77777  67766


Q ss_pred             eeeeCHHHHHHHh----hccch------hhhheecccccCccHHHH----HHH---------HhcCCcEEEEeCHHHHHH
Q 043263          140 YFFVSKEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQI----REY---------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       140 ~~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i----~~~---------~~~g~~~v~~~~~q~v~i  196 (286)
                      +.. .....+..+    +...+      .++...+...++...+.+    .+.         ..+....+++|++|++.+
T Consensus      2003 i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257      2003 ILT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred             Ccc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence            532 112222211    22222      222222223334332221    121         222335677899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++++      ||+.+...+++.|.+.  .+.+...++|.++..      ...||+|+++.+|++
T Consensus      2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~------e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257      2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC------EALCTRLAIMVKGAF 2148 (2272)
T ss_pred             HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999988888888      7777777777766542  234667779988875      368999999988854

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=1.4e-17  Score=143.11  Aligned_cols=180  Identities=17%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++||++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|+.+...       ..|+.|+  ++|.++...
T Consensus         4 l~~~~v~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~~G~v~~~g~~i~~~   75 (250)
T PRK14266          4 IEVENLNTYFDDAHILKNVNLDIPK-NSVTALIGPSGCGKSTFIRTLNRMNDLIP-------GFRHEGHIYLDGVDIYDP   75 (250)
T ss_pred             EEEEeEEEEeCCeEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhhccCC-------CCCCccEEEECCEEcccc
Confidence            456788888874  78999999998 99999999999999999999999752000       0013444  455443211


Q ss_pred             --CHHHHHHHh----hcc-----chhhhheecccccCc-cH----HHHH-------------HHHhcCCcEEEEeCHHHH
Q 043263          144 --SKEEFLQMV----DKN-----ELLEYALVYGDYKGI-PK----KQIR-------------EYMAKGYDIVLRVDIQGA  194 (286)
Q Consensus       144 --~~~~~~~~i----~~~-----~~~~~~~~~~~~~~~-~~----~~i~-------------~~~~~g~~~v~~~~~q~v  194 (286)
                        +....+..+    ++.     ...++..+....++. ..    +.+.             ..+......+++|++|++
T Consensus        76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv  155 (250)
T PRK14266         76 AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL  155 (250)
T ss_pred             cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence              111111111    111     111111110000110 11    1111             112333455778899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .++++++.+|+++++      ||+.+...+.+.|.+.. +.+...++|++...      ...||+++++++|++
T Consensus       156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~------~~~~~~i~~l~~G~i  223 (250)
T PRK14266        156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQA------TRVSKYTSFFLNGEI  223 (250)
T ss_pred             HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHH------HhhcCEEEEEECCeE
Confidence            999999988888887      77776777777666532 33566778888775      467999988887865

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.66  E-value=2.5e-17  Score=139.13  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             HHhHhHHHHhc---------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC
Q 043263           68 ELLRSLEASLG---------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN  136 (286)
Q Consensus        68 i~~~~v~~~~~---------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~  136 (286)
                      ++++|+++.|+         .+++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~------------~~~G~i~~~   68 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNA-GECVALSGPSGAGKSTLLKSLYANYL------------PDSGRILVR   68 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCeEEEe
Confidence            34667777774         268899999998 99999999999999999999999986            44454  33


Q ss_pred             --Cc--ceeeeCHHHH---H-H---Hhhcc-chh------hhheecccccCcc----HHHHHHHH----------hcCCc
Q 043263          137 --GK--DYFFVSKEEF---L-Q---MVDKN-ELL------EYALVYGDYKGIP----KKQIREYM----------AKGYD  184 (286)
Q Consensus       137 --g~--~~~~~~~~~~---~-~---~i~~~-~~~------~~~~~~~~~~~~~----~~~i~~~~----------~~g~~  184 (286)
                        |.  ++...+...+   + .   .+.+. .+.      ++........+..    .+.+.+++          .....
T Consensus        69 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  148 (224)
T TIGR02324        69 HEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPA  148 (224)
T ss_pred             cCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcc
Confidence              21  2211121111   0 0   01111 111      1111000001111    11222221          12234


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      .+++|++|++.++++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+.+..      ...||+++..
T Consensus       149 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~------~~~~d~i~~~  222 (224)
T TIGR02324       149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR------ELVADRVMDV  222 (224)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhcceeEec
Confidence            4667889999999999988888777      7776677776666543  233666778887763      2578888765

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.66  E-value=1.9e-17  Score=156.82  Aligned_cols=175  Identities=13%  Similarity=0.113  Sum_probs=114.6

Q ss_pred             HHHhHhHHHHhc-----------c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCC
Q 043263           67 IELLRSLEASLG-----------H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPG  133 (286)
Q Consensus        67 ~i~~~~v~~~~~-----------~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G  133 (286)
                      .++++|+++.|+           .  +|+++++.+.+ |++++|+||||||||||+++|+|+++             .+|
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLlk~l~Gl~~-------------~~G  340 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP-GETLGLVGESGSGKSTTGLALLRLIN-------------SQG  340 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcC-CCEEEEECCCCCCHHHHHHHHhCcCC-------------CCc
Confidence            589999999994           2  68999999998 99999999999999999999999873             334


Q ss_pred             C--cCCcceeeeCHHHH---HHH---hhcc---------chhhhheecccccC--cc----HHHHHHH----------Hh
Q 043263          134 E--VNGKDYFFVSKEEF---LQM---VDKN---------ELLEYALVYGDYKG--IP----KKQIREY----------MA  180 (286)
Q Consensus       134 ~--~~g~~~~~~~~~~~---~~~---i~~~---------~~~~~~~~~~~~~~--~~----~~~i~~~----------~~  180 (286)
                      +  ++|.++...+....   +..   +.+.         ...++.......++  ..    .+.+.+.          ..
T Consensus       341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  420 (529)
T PRK15134        341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH  420 (529)
T ss_pred             EEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence            4  45544432222111   111   1111         11111111000010  11    1112222          12


Q ss_pred             cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          181 KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       181 ~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      .....+++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|++...      ...||
T Consensus       421 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~------~~~~d  494 (529)
T PRK15134        421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV------RALCH  494 (529)
T ss_pred             cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH------HHhcC
Confidence            23356778999999999999988888887      7777677777766642   234777889998875      36799


Q ss_pred             EEEECCCCCH
Q 043263          252 YVVVNAEGKL  261 (286)
Q Consensus       252 ~viv~~~G~i  261 (286)
                      +|+++++|++
T Consensus       495 ~i~~l~~G~i  504 (529)
T PRK15134        495 QVIVLRQGEV  504 (529)
T ss_pred             eEEEEECCEE
Confidence            9999999876

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=2e-17  Score=142.92  Aligned_cols=176  Identities=16%  Similarity=0.100  Sum_probs=107.9

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +.++++++.|+.  .++++++.+.+ |++++|+|+||||||||+++|+|++.....       .+..|+  ++|.++...
T Consensus         9 ~~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~-------~~~~G~i~~~g~~i~~~   80 (261)
T PRK14263          9 MDCKLDKIFYGNFMAVRDSHVPIRK-NEITGFIGPSGCGKSTVLRSLNRMNDLVKG-------FRFEGHVHFLGQDVYGK   80 (261)
T ss_pred             EEEEeEEEEeCCEEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcccccccC-------CCCceEEEECCEecccc
Confidence            344555666764  68899999998 999999999999999999999999751000       013454  556544211


Q ss_pred             --CHHHHHHHh----hccc-----hhhhheecccccCc---cHHHHHHHHh-------------cCCcEEEEeCHHHHHH
Q 043263          144 --SKEEFLQMV----DKNE-----LLEYALVYGDYKGI---PKKQIREYMA-------------KGYDIVLRVDIQGART  196 (286)
Q Consensus       144 --~~~~~~~~i----~~~~-----~~~~~~~~~~~~~~---~~~~i~~~~~-------------~g~~~v~~~~~q~v~i  196 (286)
                        ....++..+    ++..     ..++..+....+..   ..+.+.++++             .....+.+|+.|++.+
T Consensus        81 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l  160 (261)
T PRK14263         81 GVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI  160 (261)
T ss_pred             ccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence              111112211    1111     11111111000000   0112222221             2223467889999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ||+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++..      ...||+|++++
T Consensus       161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i------~~~~d~v~~l~  222 (261)
T PRK14263        161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA------IRVADTTAFFS  222 (261)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEe
Confidence            9999988888888      78777778877777642 33566678988865      37899999984

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.4e-17  Score=157.81  Aligned_cols=176  Identities=13%  Similarity=0.055  Sum_probs=110.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceeeeC
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFFVS  144 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~~~  144 (286)
                      ++++|+++.|+.  .++++++.+.+ |++++|+||||||||||+++|+|+++...+.+.          ++|. .+.++.
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~----------~~~~~~i~~~~   70 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGG-GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVS----------LDPNERLGKLR   70 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----------ecCCCEEEEEe
Confidence            456788999975  78999999998 999999999999999999999999863333222          2221 111111


Q ss_pred             H----------HH-HHHHh--------------hccch--------hhhheecccccCcc-HHHHHHHH----------h
Q 043263          145 K----------EE-FLQMV--------------DKNEL--------LEYALVYGDYKGIP-KKQIREYM----------A  180 (286)
Q Consensus       145 ~----------~~-~~~~i--------------~~~~~--------~~~~~~~~~~~~~~-~~~i~~~~----------~  180 (286)
                      +          .+ +....              .....        .+....+...++.. .+.+.+++          .
T Consensus        71 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  150 (530)
T PRK15064         71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY  150 (530)
T ss_pred             ccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence            1          00 00000              00000        00000000000000 11122221          1


Q ss_pred             cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          181 KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       181 ~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      .....+++|++|++++|++++.+|+++++      ||+.+...+.+.|.+. +.+...++|+++..      ...||+|+
T Consensus       151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~------~~~~d~i~  223 (530)
T PRK15064        151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER-NSTMIIISHDRHFL------NSVCTHMA  223 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CCeEEEEeCCHHHH------HhhcceEE
Confidence            12355778999999999999988888888      7887777787777654 34777889988875      36799999


Q ss_pred             ECCCCCH
Q 043263          255 VNAEGKL  261 (286)
Q Consensus       255 v~~~G~i  261 (286)
                      ++++|++
T Consensus       224 ~l~~g~i  230 (530)
T PRK15064        224 DLDYGEL  230 (530)
T ss_pred             EEeCCEE
Confidence            9988875

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.65  E-value=4.1e-17  Score=140.91  Aligned_cols=171  Identities=15%  Similarity=0.095  Sum_probs=103.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc-eeeeCHHHHHHHhhccc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD-YFFVSKEEFLQMVDKNE  156 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~-~~~~~~~~~~~~i~~~~  156 (286)
                      .+.++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.. +.....    .......
T Consensus        39 il~~is~~i~~-Ge~~~liG~NGsGKSTLlk~L~Gl~~------------p~~G~I~~~g~~~~~~~~~----~~~~~~t  101 (264)
T PRK13546         39 ALDDISLKAYE-GDVIGLVGINGSGKSTLSNIIGGSLS------------PTVGKVDRNGEVSVIAISA----GLSGQLT  101 (264)
T ss_pred             EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCEEeEEeccc----CCCCCCc
Confidence            68889999998 99999999999999999999999986            44444  33321 100000    0000001


Q ss_pred             hhhhheecccccCccHHHH-------------HHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263          157 LLEYALVYGDYKGIPKKQI-------------REYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA  217 (286)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i-------------~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~  217 (286)
                      ..++.......++...+..             ...+......+++|++|++.+|++++.+|+++|+      ||+.+...
T Consensus       102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~  181 (264)
T PRK13546        102 GIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK  181 (264)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence            1111110000001111111             1112333456778899999999999988888887      66666666


Q ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH------HHHHHHHHHHHH
Q 043263          218 LVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL------DSAVKLVESVID  273 (286)
Q Consensus       218 l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i------~~~~~~l~~~i~  273 (286)
                      +.+.|.+.  .+.+...++|.+...      ...||+|+++++|.+      ++...+....+.
T Consensus       182 l~~~L~~~~~~g~tiIiisH~~~~i------~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~  239 (264)
T PRK13546        182 CLDKIYEFKEQNKTIFFVSHNLGQV------RQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLN  239 (264)
T ss_pred             HHHHHHHHHHCCCEEEEEcCCHHHH------HHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHH
Confidence            66666542  234677778887764      357999999887754      444454444443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.65  E-value=3.4e-17  Score=155.78  Aligned_cols=171  Identities=18%  Similarity=0.174  Sum_probs=111.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-CCc--cee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-NGK--DYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-~g~--~~~  141 (286)
                      .+.++||++.|+.  .|.++++.+.+ |++++|+|+||||||||+++|+|++.            |..|++ .+.  .+.
T Consensus       324 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~i~G~~~------------p~~G~i~~~~~~~i~  390 (556)
T PRK11819        324 VIEAENLSKSFGDRLLIDDLSFSLPP-GGIVGIIGPNGAGKSTLFKMITGQEQ------------PDSGTIKIGETVKLA  390 (556)
T ss_pred             EEEEEeEEEEECCeeeecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECCceEEE
Confidence            4889999999976  79999999998 99999999999999999999999986            444441 121  122


Q ss_pred             eeCHHHHHHHhhccchhhhheecccccCc--cHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263          142 FVSKEEFLQMVDKNELLEYALVYGDYKGI--PKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF  209 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il  209 (286)
                      ++.++. ..........++.......++.  ........          .......+++|++|++.+|++++.+|+++|+
T Consensus       391 ~v~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  469 (556)
T PRK11819        391 YVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL  469 (556)
T ss_pred             EEeCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            222211 0111111122221110000000  01111111          1223346778999999999999988888888


Q ss_pred             ------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 ------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 ------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                            ||+.+...+.+.|.+..+ +...++|.++..      ...||+|+++++
T Consensus       470 DEPt~~LD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~------~~~~d~i~~l~~  517 (556)
T PRK11819        470 DEPTNDLDVETLRALEEALLEFPG-CAVVISHDRWFL------DRIATHILAFEG  517 (556)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHH------HHhCCEEEEEEC
Confidence                  788778888887777644 667779988764      367999988864

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.65  E-value=2.8e-17  Score=154.32  Aligned_cols=176  Identities=14%  Similarity=0.137  Sum_probs=116.3

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .++++|+++.+...++++++.+.+ |++++|+|+||||||||+++|+|+..            |..|+  ++|.++...+
T Consensus       250 ~i~~~~l~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~i~~~~  316 (491)
T PRK10982        250 ILEVRNLTSLRQPSIRDVSFDLHK-GEILGIAGLVGAKRTDIVETLFGIRE------------KSAGTITLHGKKINNHN  316 (491)
T ss_pred             EEEEeCcccccCcccceeeEEEeC-CcEEEEecCCCCCHHHHHHHHcCCCc------------CCccEEEECCEECCCCC
Confidence            478899998864479999999998 99999999999999999999999986            55555  4555443222


Q ss_pred             HHHH-HHH---hhcc----------chhhhheecc------cccCc-c----HHHHHHHH----------hcCCcEEEEe
Q 043263          145 KEEF-LQM---VDKN----------ELLEYALVYG------DYKGI-P----KKQIREYM----------AKGYDIVLRV  189 (286)
Q Consensus       145 ~~~~-~~~---i~~~----------~~~~~~~~~~------~~~~~-~----~~~i~~~~----------~~g~~~v~~~  189 (286)
                      .... +..   +.+.          .+.++ ....      ..++. .    .+.+.+.+          ......+++|
T Consensus       317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  395 (491)
T PRK10982        317 ANEAINHGFALVTEERRSTGIYAYLDIGFN-SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGG  395 (491)
T ss_pred             HHHHHHCCCEEcCCchhhCCcccCCcHHHh-eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcH
Confidence            2111 110   1111          11111 1111      00111 1    11112211          1223467789


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++.+|++++.+|+++|+      ||+.+.+.+.+.+.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~------~~~~d~v~~l~~g~i  469 (491)
T PRK10982        396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPEL------LGITDRILVMSNGLV  469 (491)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHH------HhhCCEEEEEECCEE
Confidence            99999999999989988888      8888888887766442  234777889988875      478999999988875


Q ss_pred             H
Q 043263          262 D  262 (286)
Q Consensus       262 ~  262 (286)
                      .
T Consensus       470 ~  470 (491)
T PRK10982        470 A  470 (491)
T ss_pred             E
Confidence            3

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=3.5e-17  Score=154.19  Aligned_cols=177  Identities=19%  Similarity=0.195  Sum_probs=113.9

Q ss_pred             HHHhHhHHHHhc---c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           67 IELLRSLEASLG---H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        67 ~i~~~~v~~~~~---~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      .++++||++.|+   .  +++++++.+.+ |++++|+|+||||||||+++|+|++.+           |.+|+  ++|.+
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~~~G~i~~~g~~  326 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRR-GEILGIAGLVGAGRTELVQCLFGAYPG-----------RWEGEIFIDGKP  326 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcC-CcEEEEeCCCCCCHHHHHHHHhCCCCC-----------CCCcEEEECCEE
Confidence            478999999993   2  68999999998 999999999999999999999998751           24554  44544


Q ss_pred             eeeeCHH-HHHHH---hhcc----------chhhhheec--ccccC---cc----HHHHHHHHhc----------CCcEE
Q 043263          140 YFFVSKE-EFLQM---VDKN----------ELLEYALVY--GDYKG---IP----KKQIREYMAK----------GYDIV  186 (286)
Q Consensus       140 ~~~~~~~-~~~~~---i~~~----------~~~~~~~~~--~~~~~---~~----~~~i~~~~~~----------g~~~v  186 (286)
                      +...... ..+..   +.+.          ...++..+.  ...+.   ..    .+.+.+.++.          ....+
T Consensus       327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  406 (506)
T PRK13549        327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL  406 (506)
T ss_pred             CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccC
Confidence            3211111 11110   1111          111111110  00000   01    1122222211          12356


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      ++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++
T Consensus       407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~------~~~~d~v~~l~~  480 (506)
T PRK13549        407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEV------LGLSDRVLVMHE  480 (506)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHH------HHhCCEEEEEEC
Confidence            78999999999999988888888      7877777776665542  234777889998875      368999999998


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       481 G~i  483 (506)
T PRK13549        481 GKL  483 (506)
T ss_pred             CEE
Confidence            875

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.65  E-value=2.4e-16  Score=123.65  Aligned_cols=184  Identities=17%  Similarity=0.144  Sum_probs=111.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~  144 (286)
                      -+.++++++.|+.  ...++++.+.| |++.+|+|.||||||||+++|++.+.+..+.+.|..|.-.     -.+++.++
T Consensus         6 LL~V~~lsk~Yg~~~gc~~vsF~l~P-GeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~-----~~dl~~ms   79 (258)
T COG4107           6 LLSVSGLSKLYGPGKGCRDVSFDLYP-GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ-----PRDLYTMS   79 (258)
T ss_pred             ceeehhhhhhhCCCcCccccceeecC-CcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCC-----chhHhhhc
Confidence            4678999999987  79999999999 9999999999999999999999988744444443322110     01333344


Q ss_pred             HHHHHHHh-hccchh-------------------hhheecc-cccCccHHHHHHHHh----------cCCcEEEEeCHHH
Q 043263          145 KEEFLQMV-DKNELL-------------------EYALVYG-DYKGIPKKQIREYMA----------KGYDIVLRVDIQG  193 (286)
Q Consensus       145 ~~~~~~~i-~~~~~~-------------------~~~~~~~-~~~~~~~~~i~~~~~----------~g~~~v~~~~~q~  193 (286)
                      ..+-+.+. .+..|+                   |.....+ ..|+-...+..++++          .-..++.+|-.||
T Consensus        80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR  159 (258)
T COG4107          80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR  159 (258)
T ss_pred             hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence            44433332 111121                   1111111 134433344444433          2234566777899


Q ss_pred             HHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          194 ARTLRRILGDSAVFVFLAAES-------EMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       194 v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      +.|||.+.. .+.++|+|.|+       ...+..-++..   -+....+++|++..+      .-.+|+..++.+|.+.|
T Consensus       160 LQiARnLVt-~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va------rLla~rlmvmk~g~vve  232 (258)
T COG4107         160 LQIARNLVT-RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA------RLLADRLMVMKQGQVVE  232 (258)
T ss_pred             HHHHHHhcc-CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH------HHhhhcceeecCCCEec
Confidence            999999994 45556655554       33333333322   122445668988876      35688888888876543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.65  E-value=2.1e-17  Score=131.90  Aligned_cols=143  Identities=23%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHH
Q 043263           71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKE  146 (286)
Q Consensus        71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~  146 (286)
                      +++++.|..  .+.++++.+.+ |++++|+|+|||||||++++|++.+.            +..|+  ++|.+.......
T Consensus         3 ~~~~~~~~~~~~l~~~~~~i~~-g~~~~i~G~nGsGKStll~~l~g~~~------------~~~G~i~~~~~~~~~~~~~   69 (157)
T cd00267           3 ENLSFRYGGRTALDNVSLTLKA-GEIVALVGPNGSGKSTLLRAIAGLLK------------PTSGEILIDGKDIAKLPLE   69 (157)
T ss_pred             EEEEEEeCCeeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCccEEEECCEEcccCCHH
Confidence            455666653  68888888887 99999999999999999999999876            55565  455433211111


Q ss_pred             HHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHH
Q 043263          147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVE  220 (286)
Q Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~  220 (286)
                      .+...+   .+..            .             +.+|+.+++.++++++..|+++++      +|..+...+.+
T Consensus        70 ~~~~~i---~~~~------------q-------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~  121 (157)
T cd00267          70 ELRRRI---GYVP------------Q-------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE  121 (157)
T ss_pred             HHHhce---EEEe------------e-------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence            110000   0000            0             667899999999999988877777      66665666766


Q ss_pred             HHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          221 RLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       221 rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .+.+..  +.+...++|+++..      ...||+++++++|+
T Consensus       122 ~l~~~~~~~~tii~~sh~~~~~------~~~~d~i~~l~~g~  157 (157)
T cd00267         122 LLRELAEEGRTVIIVTHDPELA------ELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeCcC
Confidence            666432  23666778888774      24579999887753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.64  E-value=2.4e-17  Score=156.83  Aligned_cols=185  Identities=12%  Similarity=0.058  Sum_probs=111.7

Q ss_pred             HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee--
Q 043263           67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF--  141 (286)
Q Consensus        67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~--  141 (286)
                      .++++||++.|+ .  .|+++++.+.+ |++++|+||||||||||+++|+|++....+.+..... ...|.+......  
T Consensus         6 ~l~i~~l~~~y~~~~~il~~vs~~i~~-Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-~~i~~v~Q~~~~~~   83 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQILKDISLSFFP-GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-IKVGYLPQEPQLDP   83 (556)
T ss_pred             EEEEeeEEEEeCCCCeeeeCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCCCC
Confidence            377899999997 4  79999999998 9999999999999999999999998633333321100 000001000000  


Q ss_pred             eeCHHH-HHHHhhc-----cch--h-hhheecc------------------c--ccCccHHHHHHHH--------hcCCc
Q 043263          142 FVSKEE-FLQMVDK-----NEL--L-EYALVYG------------------D--YKGIPKKQIREYM--------AKGYD  184 (286)
Q Consensus       142 ~~~~~~-~~~~i~~-----~~~--~-~~~~~~~------------------~--~~~~~~~~i~~~~--------~~g~~  184 (286)
                      ..+..+ +......     ..+  . .......                  .  .+. ..+.+.+++        .....
T Consensus        84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~  162 (556)
T PRK11819         84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD-LDSQLEIAMDALRCPPWDAKVT  162 (556)
T ss_pred             CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc-hHHHHHHHHHhCCCCcccCchh
Confidence            001100 0000000     000  0 0000000                  0  000 011222222        12234


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      .+++|++|++.+|++++.+|+++|+      ||+.+...+.+.|.+..+ +...++|+++..      ...||+|+++++
T Consensus       163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~-tviiisHd~~~~------~~~~d~i~~l~~  235 (556)
T PRK11819        163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG-TVVAVTHDRYFL------DNVAGWILELDR  235 (556)
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HhhcCeEEEEeC
Confidence            5778999999999999988888888      777777777777776654 777789988875      367999999988


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |.+
T Consensus       236 g~i  238 (556)
T PRK11819        236 GRG  238 (556)
T ss_pred             CEE
Confidence            864

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.64  E-value=1.9e-17  Score=140.15  Aligned_cols=174  Identities=14%  Similarity=0.184  Sum_probs=105.3

Q ss_pred             HhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC---cceeeeeecccCCCCCCcCCcc
Q 043263           69 LLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD---SLHFVVTATSRPMRPGEVNGKD  139 (286)
Q Consensus        69 ~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~i~~~~r~~~~G~~~g~~  139 (286)
                      .+.||++.|+.      .++++++.+.+ |++++|+||||||||||+++|+|+++   ...+.+.          ++|.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~----------~~g~~   73 (226)
T cd03234           5 PWWDVGLKAKNWNKYARILNDVSLHVES-GQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL----------FNGQP   73 (226)
T ss_pred             eeecceeeeecCccccccccCceEEEcC-CeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE----------ECCEE
Confidence            45677777742      58888888887 99999999999999999999999875   3333332          33432


Q ss_pred             eeeeCHHHHHHHh----hcc------chhhhheeccccc---Ccc----HHHHHH-HH---------hcCCcEEEEeCHH
Q 043263          140 YFFVSKEEFLQMV----DKN------ELLEYALVYGDYK---GIP----KKQIRE-YM---------AKGYDIVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i----~~~------~~~~~~~~~~~~~---~~~----~~~i~~-~~---------~~g~~~v~~~~~q  192 (286)
                      +.   ...++..+    +..      ...++..+.....   ...    ...+.+ .+         ......+++|+.|
T Consensus        74 ~~---~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  150 (226)
T cd03234          74 RK---PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERR  150 (226)
T ss_pred             CC---hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHH
Confidence            21   00111100    000      1111111100000   000    011111 11         2223456678999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHH-HHHHHHhhccCCCcEEEECCCCCHH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRI-ATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl-~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++.++++++.+|+++|+      ||+.+...+.+.+.+.  .+.+...++|++ ...      ...||+++++++|++.
T Consensus       151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~------~~~~d~i~~l~~G~i~  223 (226)
T cd03234         151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL------FRLFDRILLLSSGEIV  223 (226)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH------HHhCCEEEEEeCCEEE
Confidence            99999999988888877      7776677777766643  234666778876 333      4789999999998763

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.64  E-value=1.7e-17  Score=173.09  Aligned_cols=175  Identities=19%  Similarity=0.153  Sum_probs=121.8

Q ss_pred             HHHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++++||++.|+  .  +++++++.+.+ |++++|+|+|||||||++++|+|++.            |++|+  ++|.++
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~-Gei~aLLG~NGAGKSTLLkiLaGLl~------------PtsG~I~i~G~dI  994 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDRLNITFYE-NQITAFLGHNGAGKTTTLSILTGLLP------------PTSGTVLVGGKDI  994 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEeeEEEEcC-CcEEEEECCCCChHHHHHHHHhcCCC------------CCceEEEECCEEC
Confidence            578999999995  2  79999999998 99999999999999999999999986            77776  677765


Q ss_pred             eeeCHHHHHHHh----hccch------hhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263          141 FFVSKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       141 ~~~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~ia  197 (286)
                      .. ....++..+    ++..+      .++..++...++...    +.+.+.+         ......+++|++|++.+|
T Consensus       995 ~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257       995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred             cc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            32 222233221    22111      223222222233322    1222322         222345778999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++.+|+++|+      ||+.+...+++.|.+. .+.+...++|.++.+      ...||+|+++++|++
T Consensus      1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea------~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257      1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA------DLLGDRIAIISQGRL 1138 (2272)
T ss_pred             HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            999988888887      7777677777776654 233667779988875      368999999998875

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.64  E-value=2.2e-17  Score=159.26  Aligned_cols=174  Identities=12%  Similarity=0.100  Sum_probs=113.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-CCcc--ee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-NGKD--YF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-~g~~--~~  141 (286)
                      .++++||++.|+.  .+.++++.+.+ |++++|+||||||||||+++|+|++.            |..|++ .|.+  +.
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~~~~i~  385 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQR-GDKIALIGPNGCGKTTLLKLMLGQLQ------------ADSGRIHCGTKLEVA  385 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCCcEEE
Confidence            4789999999976  78999999998 99999999999999999999999976            445541 1322  22


Q ss_pred             eeCHHHHHHHhhccchhhhheeccccc--CccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263          142 FVSKEEFLQMVDKNELLEYALVYGDYK--GIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF  209 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il  209 (286)
                      ++.+.. ..+.......++........  .-....+...          .......+++|++||+.+|++++.+|+++|+
T Consensus       386 y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL  464 (635)
T PRK11147        386 YFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL  464 (635)
T ss_pred             EEeCcc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            222211 01111112222211100000  0001112221          1223356778999999999999988888888


Q ss_pred             ------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC-CCCH
Q 043263          210 ------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA-EGKL  261 (286)
Q Consensus       210 ------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~-~G~i  261 (286)
                            ||..+.+.+.+.|.+.++ +...++|+....      ...||+|++++ +|.+
T Consensus       465 DEPt~~LD~~~~~~l~~~l~~~~~-tvi~vSHd~~~~------~~~~d~i~~l~~~g~i  516 (635)
T PRK11147        465 DEPTNDLDVETLELLEELLDSYQG-TVLLVSHDRQFV------DNTVTECWIFEGNGKI  516 (635)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHH------HHhcCEEEEEeCCCeE
Confidence                  787777777777766544 777889988764      36799999986 6654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.8e-17  Score=146.18  Aligned_cols=181  Identities=17%  Similarity=0.163  Sum_probs=111.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .+.++||++.|+.  +|+++++.+.+ |++++|+|+||||||||+++|+|++..+..       .|..|+  ++|.++..
T Consensus        45 ~l~i~nl~~~~~~~~iL~~is~~i~~-Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~-------~p~~G~I~i~g~~i~~  116 (305)
T PRK14264         45 KLSVEDLDVYYGDDHALKGVSMDIPE-KSVTALIGPSGCGKSTFLRCLNRMNDRIKA-------ARIDGSVELDGQDIYQ  116 (305)
T ss_pred             eEEEEEEEEEeCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCC-------CCCceEEEECCEEccc
Confidence            4788999999975  79999999998 999999999999999999999998631000       023443  44443321


Q ss_pred             e--CHHHHHHHh---hcc------chhhhheecc------------cccCcc-----HHHHHHH-------------Hhc
Q 043263          143 V--SKEEFLQMV---DKN------ELLEYALVYG------------DYKGIP-----KKQIREY-------------MAK  181 (286)
Q Consensus       143 ~--~~~~~~~~i---~~~------~~~~~~~~~~------------~~~~~~-----~~~i~~~-------------~~~  181 (286)
                      .  ....++..+   .+.      ...++..+..            ..++..     .+.+.++             +..
T Consensus       117 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  196 (305)
T PRK14264        117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD  196 (305)
T ss_pred             ccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence            1  111111111   111      1111111100            000010     1112221             122


Q ss_pred             CCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEE-
Q 043263          182 GYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYV-  253 (286)
Q Consensus       182 g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~v-  253 (286)
                      ....+++|+.|++.+|++++.+|+++|+      ||+.+...+.+.|.+.. ..+...++|+++..      ...||++ 
T Consensus       197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i------~~~~d~i~  270 (305)
T PRK14264        197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQA------ARISDQTA  270 (305)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH------HHhcCEEE
Confidence            3345677899999999999988888888      78777777777776542 23566678988875      3679986 


Q ss_pred             EECCCCCH
Q 043263          254 VVNAEGKL  261 (286)
Q Consensus       254 iv~~~G~i  261 (286)
                      +++++|++
T Consensus       271 ~~l~~G~i  278 (305)
T PRK14264        271 VFLTGGEL  278 (305)
T ss_pred             EEecCCEE
Confidence            45677765

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.64  E-value=2.6e-17  Score=171.51  Aligned_cols=168  Identities=17%  Similarity=0.312  Sum_probs=117.1

Q ss_pred             HHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++++|++|.|+.    .|+++++.+++ |++++|+||||||||||+++|+|+++            |..|+  ++|. +
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~-G~~v~IvG~~GsGKSTLl~~l~g~~~------------~~~G~i~~~g~-i  701 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPE-GALVAVVGQVGCGKSSLLSALLAEMD------------KVEGHVHMKGS-V  701 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCc------------cCCcEEEECCE-E
Confidence            5889999999963    69999999998 99999999999999999999999987            55565  3442 3


Q ss_pred             eeeCHHHHHHHhhccchhhhheecccccCccHHHHH------------HHHhcCC--------cEEEEeCHHHHHHHHHH
Q 043263          141 FFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIR------------EYMAKGY--------DIVLRVDIQGARTLRRI  200 (286)
Q Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~g~--------~~v~~~~~q~v~iaral  200 (286)
                      .+++++.+   +..+...+|.. ++..+  ..+...            ..++.|.        ..+.+||+||+++||++
T Consensus       702 ~yv~Q~~~---l~~~Ti~eNI~-~g~~~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl  775 (1522)
T TIGR00957       702 AYVPQQAW---IQNDSLRENIL-FGKAL--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV  775 (1522)
T ss_pred             EEEcCCcc---ccCCcHHHHhh-cCCcc--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence            33332211   11223333322 22111  111111            1123333        34567899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVE----RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++++      ||+.+...+.+.+.+    ..+.|...++|+++.       ...||+|+++++|++
T Consensus       776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-------l~~~D~ii~l~~G~i  839 (1522)
T TIGR00957       776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-------LPQVDVIIVMSGGKI  839 (1522)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-------hhhCCEEEEecCCeE
Confidence            999999999      888878888887753    123477788998877       466999999998875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.64  E-value=2.5e-17  Score=143.41  Aligned_cols=173  Identities=15%  Similarity=0.176  Sum_probs=106.3

Q ss_pred             hhHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           65 NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ...++++|+++.....++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|. +.+
T Consensus        37 ~~~l~i~nls~~~~~vL~~vs~~i~~-Ge~~~liG~NGsGKSTLl~~I~Gl~~------------p~~G~I~i~g~-i~y  102 (282)
T cd03291          37 DNNLFFSNLCLVGAPVLKNINLKIEK-GEMLAITGSTGSGKTSLLMLILGELE------------PSEGKIKHSGR-ISF  102 (282)
T ss_pred             CCeEEEEEEEEecccceeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCE-EEE
Confidence            34578888887533389999999998 99999999999999999999999986            55555  3341 222


Q ss_pred             eCHHHHHHHhhccchhhhheecccccCccHHH------HHHH---Hhc--------CCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ------IREY---MAK--------GYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------i~~~---~~~--------g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      +.+..  .. ......++..+...........      +...   +..        ....+++|++|++.+|++++.+|+
T Consensus       103 v~q~~--~l-~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  179 (282)
T cd03291         103 SSQFS--WI-MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD  179 (282)
T ss_pred             EeCcc--cc-cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            22111  00 0011122211100000000000      0111   111        123566789999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHH-Hh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLV-ER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~-~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|+      ||+.+...+.+.+. .. .+.+...++|++...       ..||+++++++|++
T Consensus       180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-------~~~d~i~~l~~G~i  236 (282)
T cd03291         180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-------KKADKILILHEGSS  236 (282)
T ss_pred             EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-------HhCCEEEEEECCEE
Confidence            8887      66665665655442 22 233666778887763       46999999988865

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.64  E-value=8.2e-17  Score=151.56  Aligned_cols=178  Identities=16%  Similarity=0.139  Sum_probs=113.8

Q ss_pred             HHHhHhHHHHh---cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           67 IELLRSLEASL---GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        67 ~i~~~~v~~~~---~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      .++++|+++.|   +.  .++++++.+.+ |++++|+||||||||||+++|+|++.+           +.+|+  ++|.+
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~~G~i~~~g~~  324 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRR-GEILGVAGLVGAGRTELVQALFGAYPG-----------KFEGNVFINGKP  324 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeC-CcEEEEeCCCCCCHHHHHHHHhCCCCC-----------CCCeEEEECCEE
Confidence            47899999998   22  78999999998 999999999999999999999999751           13454  44544


Q ss_pred             eeeeCH-HHHHHHh---hcc----------chhhhhee-----cccccCcc----HHHHHHHHhc----------CCcEE
Q 043263          140 YFFVSK-EEFLQMV---DKN----------ELLEYALV-----YGDYKGIP----KKQIREYMAK----------GYDIV  186 (286)
Q Consensus       140 ~~~~~~-~~~~~~i---~~~----------~~~~~~~~-----~~~~~~~~----~~~i~~~~~~----------g~~~v  186 (286)
                      +..... ..++..+   .+.          ...++...     ....+...    .+.+.++++.          ....+
T Consensus       325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  404 (500)
T TIGR02633       325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL  404 (500)
T ss_pred             CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence            321111 1111111   111          11111111     00000111    1123333221          12356


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      ++|++|++.+|++++.+|+++|+      ||+.+...+.+.+.+.  .+.+...++|+++..      ...||+++++++
T Consensus       405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~------~~~~d~v~~l~~  478 (500)
T TIGR02633       405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV------LGLSDRVLVIGE  478 (500)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEEC
Confidence            78999999999999988888888      7877777776655542  234677789988875      468999999988


Q ss_pred             CCHH
Q 043263          259 GKLD  262 (286)
Q Consensus       259 G~i~  262 (286)
                      |++.
T Consensus       479 G~i~  482 (500)
T TIGR02633       479 GKLK  482 (500)
T ss_pred             CEEE
Confidence            8753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=3.3e-17  Score=157.91  Aligned_cols=174  Identities=13%  Similarity=0.125  Sum_probs=110.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc-eee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD-YFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~-~~~  142 (286)
                      +.++||++.|+.  .|+++++.+.+ |+++||+||||||||||+++|+|.+.            |++|+  ++|.. +.+
T Consensus         2 i~i~nls~~~g~~~~l~~vs~~i~~-Ge~v~LvG~NGsGKSTLLkiL~G~~~------------pd~G~I~~~~~~~i~~   68 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDNATATINP-GQKVGLVGKNGCGKSTLLALLKNEIS------------ADGGSYTFPGNWQLAW   68 (638)
T ss_pred             EEEEEEEEEeCCceeecCcEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEecCCCEEEE
Confidence            457889999986  78999999998 99999999999999999999999876            44444  22221 100


Q ss_pred             eC-------HHHHHHHhhccchh-----------------hhheecc---cccC-ccHHHHHHHH----------hcCCc
Q 043263          143 VS-------KEEFLQMVDKNELL-----------------EYALVYG---DYKG-IPKKQIREYM----------AKGYD  184 (286)
Q Consensus       143 ~~-------~~~~~~~i~~~~~~-----------------~~~~~~~---~~~~-~~~~~i~~~~----------~~g~~  184 (286)
                      +.       ...+....+....+                 .......   ...+ .....+...+          .....
T Consensus        69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~  148 (638)
T PRK10636         69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS  148 (638)
T ss_pred             EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence            00       00011110000000                 0000000   0000 0111222222          22234


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      .+++|++||+.+|++++.+|+++||      ||+.+...+.+.|.+.++ +...++|+....      ...||+|+++++
T Consensus       149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~-tviivsHd~~~l------~~~~d~i~~L~~  221 (638)
T PRK10636        149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG-TLILISHDRDFL------DPIVDKIIHIEQ  221 (638)
T ss_pred             hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HHhcCEEEEEeC
Confidence            5678999999999999988888888      777777777776766543 777889988774      367999999998


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |.+
T Consensus       222 G~i  224 (638)
T PRK10636        222 QSL  224 (638)
T ss_pred             CEE
Confidence            875

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=1.4e-16  Score=131.88  Aligned_cols=159  Identities=17%  Similarity=0.093  Sum_probs=103.7

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh-hccc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV-DKNE  156 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i-~~~~  156 (286)
                      +|+++++.+.+ |+.+||+|+||||||||+++|+|.++            |+.|+  +.|.-...+   ++..-+ ++-+
T Consensus        42 aL~disf~i~~-Ge~vGiiG~NGaGKSTLlkliaGi~~------------Pt~G~v~v~G~v~~li---~lg~Gf~pelT  105 (249)
T COG1134          42 ALKDISFEIYK-GERVGIIGHNGAGKSTLLKLIAGIYK------------PTSGKVKVTGKVAPLI---ELGAGFDPELT  105 (249)
T ss_pred             EecCceEEEeC-CCEEEEECCCCCcHHHHHHHHhCccC------------CCCceEEEcceEehhh---hcccCCCcccc
Confidence            79999999998 99999999999999999999999997            77777  445311100   000000 1112


Q ss_pred             hhhhheecccccCccHHHHHHHH-------------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHH
Q 043263          157 LLEYALVYGDYKGIPKKQIREYM-------------AKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMA  217 (286)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~~~-------------~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~  217 (286)
                      -.+|....+..+|...+++++..             ..-..+.+.|-.-|++.+-+...+|+++|+      -|+.=.+.
T Consensus       106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K  185 (249)
T COG1134         106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK  185 (249)
T ss_pred             hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence            23444455555566655554432             222223334555778888777778888888      33333344


Q ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          218 LVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       218 l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ..+|+.+.  .+.+...+.|.+...      .+.||+++++++|.
T Consensus       186 ~~~rl~e~~~~~~tiv~VSHd~~~I------~~~Cd~~i~l~~G~  224 (249)
T COG1134         186 CLERLNELVEKNKTIVLVSHDLGAI------KQYCDRAIWLEHGQ  224 (249)
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHH------HHhcCeeEEEeCCE
Confidence            55666654  234667779988886      47899999999984

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.62  E-value=5.2e-17  Score=156.85  Aligned_cols=174  Identities=17%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++|+++.|+.      .++++++.+.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|++
T Consensus         5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~------------~~~G~i~~~g~~   71 (648)
T PRK10535          5 LELKDIRRSYPSGEEQVEVLKGISLDIYA-GEMVAIVGASGSGKSTLMNILGCLDK------------PTSGTYRVAGQD   71 (648)
T ss_pred             EEEeeEEEEeCCCCCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCEE
Confidence            667888888841      68999999998 99999999999999999999999986            66666  67776


Q ss_pred             eeeeCHHHHHH----Hh----hccchhhhheeccc------ccCccHH----HHHHH---------HhcCCcEEEEeCHH
Q 043263          140 YFFVSKEEFLQ----MV----DKNELLEYALVYGD------YKGIPKK----QIREY---------MAKGYDIVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~----~i----~~~~~~~~~~~~~~------~~~~~~~----~i~~~---------~~~g~~~v~~~~~q  192 (286)
                      +...+..++..    .+    ++..++++.....+      ..+...+    .+.+.         +......+.+|+.|
T Consensus        72 i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q  151 (648)
T PRK10535         72 VATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ  151 (648)
T ss_pred             cCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence            65444433211    11    11111111111111      1111111    11222         23334556778999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+||+++.+|+++|+      ||+.+.+.+.+.+.+.  .+.+...++|+++.       ...||+++++++|++
T Consensus       152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~-------~~~~d~i~~l~~G~i  221 (648)
T PRK10535        152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV-------AAQAERVIEIRDGEI  221 (648)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-------HHhCCEEEEEECCEE
Confidence            99999999988888887      7777677776666543  23466777898876       346999999988865

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.62  E-value=9.4e-17  Score=152.74  Aligned_cols=173  Identities=15%  Similarity=0.126  Sum_probs=110.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceeee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFFV  143 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~~  143 (286)
                      .++++|+++.|+.  .|.++++.+.+ |++++|+||||||||||+++|+|++....+.+.          +++. .+.++
T Consensus       322 ~l~~~~l~~~~~~~~~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~----------~~~~~~i~~v  390 (552)
T TIGR03719       322 VIEAENLSKGFGDKLLIDDLSFKLPP-GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK----------IGETVKLAYV  390 (552)
T ss_pred             EEEEeeEEEEECCeeeeccceEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE----------ECCceEEEEE
Confidence            4789999999975  79999999998 999999999999999999999999763333332          1111 12222


Q ss_pred             CHHHHHHHhhccchhhhheecccccCcc--HHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYKGIP--KKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF--  209 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il--  209 (286)
                      .++. ..........++.......++..  .....+.          .......+++|++|++.+|++++.+|+++|+  
T Consensus       391 ~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE  469 (552)
T TIGR03719       391 DQSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE  469 (552)
T ss_pred             eCCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence            2110 00000111111111100000000  1111111          1222345778999999999999988888888  


Q ss_pred             ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                          ||+.+...+.+.|.+..+ +...++|+++..      ...||+|+++++
T Consensus       470 Pt~~LD~~~~~~l~~~l~~~~~-~viivsHd~~~~------~~~~d~i~~l~~  515 (552)
T TIGR03719       470 PTNDLDVETLRALEEALLEFAG-CAVVISHDRWFL------DRIATHILAFEG  515 (552)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCHHHH------HHhCCEEEEEEC
Confidence                787778888887877654 677779988765      367999998875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.62  E-value=1.5e-16  Score=136.61  Aligned_cols=180  Identities=15%  Similarity=0.113  Sum_probs=97.5

Q ss_pred             HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHH
Q 043263           71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKE  146 (286)
Q Consensus        71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~  146 (286)
                      .+|+++|+.   .+++++ .+.+ |++++|+||||||||||+++|+|+++...+.+....... ....++|.++......
T Consensus         4 ~~~~~~y~~~~~~l~~i~-~i~~-Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLP-VPRE-GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCcchhhhcCC-CCCC-CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence            356777753   577777 4565 999999999999999999999999873333321000000 0000234433211111


Q ss_pred             HHHHHh------hccchhhh---heecccccCcc-HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEE
Q 043263          147 EFLQMV------DKNELLEY---ALVYGDYKGIP-KKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVF  207 (286)
Q Consensus       147 ~~~~~i------~~~~~~~~---~~~~~~~~~~~-~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~  207 (286)
                      ..+..+      +.......   ..+..+..... .+.+.+.+         ......+.+|++|++.++++++.+|+++
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il  161 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY  161 (255)
T ss_pred             hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            111000      00000000   00000000000 11122221         2223346678999999999999888877


Q ss_pred             EE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          208 VF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       208 Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      ++      ||+.+...+.+.+.+.  .+.+...++|++...      ...||+|+++++
T Consensus       162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~------~~~ad~i~~l~~  214 (255)
T cd03236         162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL------DYLSDYIHCLYG  214 (255)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH------HHhCCEEEEECC
Confidence            77      6665555555555442  234667778988774      357999999974

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.62  E-value=5.4e-17  Score=154.39  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=109.6

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee--e
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF--F  142 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~--~  142 (286)
                      ++++||++.|+ .  .|+++++.+.+ |++++|+|+||||||||+++|+|++.+..+.+..... ...|.+......  .
T Consensus         5 i~~~nls~~~~~~~~il~~is~~i~~-Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~v~Q~~~~~~~   82 (552)
T TIGR03719         5 YTMNRVSKVVPPKKEILKDISLSFFP-GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-IKVGYLPQEPQLDPT   82 (552)
T ss_pred             EEEeeEEEecCCCCeeecCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCCCCC
Confidence            67889999997 4  79999999998 9999999999999999999999998633333321100 000101100000  0


Q ss_pred             eCHHH-HHHHhhc--c---chh---hhh-eeccc----------------ccCc--cHHHHHHHH--------hcCCcEE
Q 043263          143 VSKEE-FLQMVDK--N---ELL---EYA-LVYGD----------------YKGI--PKKQIREYM--------AKGYDIV  186 (286)
Q Consensus       143 ~~~~~-~~~~i~~--~---~~~---~~~-~~~~~----------------~~~~--~~~~i~~~~--------~~g~~~v  186 (286)
                      .+..+ +...+..  .   .+.   +.. .....                ..+.  ....+.+.+        ......+
T Consensus        83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L  162 (552)
T TIGR03719        83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL  162 (552)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence            11110 0000000  0   000   000 00000                0000  001111121        1223457


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+..+ +...++|+++..      ...||+|+++++|+
T Consensus       163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~-tvIiisHd~~~~------~~~~d~v~~l~~g~  235 (552)
T TIGR03719       163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG-TVVAVTHDRYFL------DNVAGWILELDRGR  235 (552)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HhhcCeEEEEECCE
Confidence            78999999999999988888888      777777777777776543 777889988875      36789999988886


Q ss_pred             H
Q 043263          261 L  261 (286)
Q Consensus       261 i  261 (286)
                      +
T Consensus       236 i  236 (552)
T TIGR03719       236 G  236 (552)
T ss_pred             E
Confidence            4

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.62  E-value=1.9e-17  Score=156.49  Aligned_cols=176  Identities=14%  Similarity=0.182  Sum_probs=112.0

Q ss_pred             HHHhHhHHHHhc-------ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cC-
Q 043263           67 IELLRSLEASLG-------HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VN-  136 (286)
Q Consensus        67 ~i~~~~v~~~~~-------~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~-  136 (286)
                      .++++||++.|+       .+++++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++ 
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~~  345 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKE-GEIFGIVGTSGAGKTTLSKIIAGVLE------------PTSGEVNVRV  345 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEEec
Confidence            588999999994       168999999998 99999999999999999999999986            44454  22 


Q ss_pred             Ccce---eeeCH---HHHHHHh----hccchhhhheeccccc-----Ccc----HHHHHHHH--------------hcCC
Q 043263          137 GKDY---FFVSK---EEFLQMV----DKNELLEYALVYGDYK-----GIP----KKQIREYM--------------AKGY  183 (286)
Q Consensus       137 g~~~---~~~~~---~~~~~~i----~~~~~~~~~~~~~~~~-----~~~----~~~i~~~~--------------~~g~  183 (286)
                      |.+.   ...+.   ..++..+    +...+..+..+..++.     ...    .+.+.+++              ....
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  425 (520)
T TIGR03269       346 GDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP  425 (520)
T ss_pred             CCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence            3211   11110   0111111    1111111111111100     011    11122221              1223


Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      ..+++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+
T Consensus       426 ~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~------~~~~d~i~  499 (520)
T TIGR03269       426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV------LDVCDRAA  499 (520)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH------HHhCCEEE
Confidence            45678899999999999988888887      7777777777766542   234677889988875      36799999


Q ss_pred             ECCCCCH
Q 043263          255 VNAEGKL  261 (286)
Q Consensus       255 v~~~G~i  261 (286)
                      ++++|++
T Consensus       500 ~l~~G~i  506 (520)
T TIGR03269       500 LMRDGKI  506 (520)
T ss_pred             EEECCEE
Confidence            9988865

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.4e-16  Score=148.35  Aligned_cols=174  Identities=14%  Similarity=0.135  Sum_probs=111.1

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .+.++|+++.  ..++++++.+.+ |++++|+||||||||||+++|+|+++            |.+|+  ++|+++....
T Consensus       257 ~l~~~~~~~~--~~l~~isl~i~~-Ge~~~iiG~NGsGKSTLlk~l~G~~~------------p~~G~i~~~g~~~~~~~  321 (501)
T PRK11288        257 RLRLDGLKGP--GLREPISFSVRA-GEIVGLFGLVGAGRSELMKLLYGATR------------RTAGQVYLDGKPIDIRS  321 (501)
T ss_pred             EEEEeccccC--CcccceeEEEeC-CcEEEEEcCCCCCHHHHHHHHcCCCc------------CCCceEEECCEECCCCC
Confidence            3567777643  478999999998 99999999999999999999999986            55555  4554432211


Q ss_pred             HHH-HHH---Hhhcc----------chhhhheeccccc----C---cc---HHHHHHHHh----------cCCcEEEEeC
Q 043263          145 KEE-FLQ---MVDKN----------ELLEYALVYGDYK----G---IP---KKQIREYMA----------KGYDIVLRVD  190 (286)
Q Consensus       145 ~~~-~~~---~i~~~----------~~~~~~~~~~~~~----~---~~---~~~i~~~~~----------~g~~~v~~~~  190 (286)
                      ... .+.   .+.+.          ...++.......+    +   ..   .+.+.+.+.          .....+++|+
T Consensus       322 ~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  401 (501)
T PRK11288        322 PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN  401 (501)
T ss_pred             HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence            111 111   01111          1122211100000    0   00   112222221          1224567899


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~------~~~~d~i~~l~~g~i  474 (501)
T PRK11288        402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV------LGVADRIVVMREGRI  474 (501)
T ss_pred             HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HhhCCEEEEEECCEE
Confidence            9999999999988888888      7777777776665432  234777889988875      478999999988864

>PRK13409 putative ATPase RIL; Provisional

Probab=99.61  E-value=1.2e-16  Score=152.11  Aligned_cols=172  Identities=15%  Similarity=0.108  Sum_probs=107.8

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      .++++|+++.|+. .|+++++.+.+ |++++|+||||||||||+++|+|++....+.+..          + ..+.++.+
T Consensus       340 ~l~~~~ls~~~~~~~l~~~s~~i~~-Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~----------~-~~i~y~~Q  407 (590)
T PRK13409        340 LVEYPDLTKKLGDFSLEVEGGEIYE-GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP----------E-LKISYKPQ  407 (590)
T ss_pred             EEEEcceEEEECCEEEEecceEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE----------e-eeEEEecc
Confidence            4789999999976 57888888887 9999999999999999999999998633332221          1 11111111


Q ss_pred             HHHHHHhhccchhhhheecccccCcc--HHH------HHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------Ee
Q 043263          146 EEFLQMVDKNELLEYALVYGDYKGIP--KKQ------IREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LA  211 (286)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~------i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld  211 (286)
                      ..  .........++.......+...  ...      +..........+++|++||+++|++++.+|+++|+      ||
T Consensus       408 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD  485 (590)
T PRK13409        408 YI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD  485 (590)
T ss_pred             cc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            10  0000001111110000000000  000      11123445567889999999999999988877777      66


Q ss_pred             cCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          212 AESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       212 ~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++
T Consensus       486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~------~~~aDrvivl~~  529 (590)
T PRK13409        486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMI------DYISDRLMVFEG  529 (590)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEcC
Confidence            66666666666543   244778889988875      367999999974

>PLN03073 ABC transporter F family; Provisional

Probab=99.61  E-value=6.5e-17  Score=156.80  Aligned_cols=174  Identities=17%  Similarity=0.165  Sum_probs=112.5

Q ss_pred             HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-ceee
Q 043263           67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-DYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-~~~~  142 (286)
                      .++++||++.|+.   .|.++++.+.+ |++++|+||||||||||+++|+|++.+..+.+..          ++. .+.+
T Consensus       508 ~L~~~~ls~~y~~~~~il~~vsl~i~~-Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~----------~~~~~igy  576 (718)
T PLN03073        508 IISFSDASFGYPGGPLLFKNLNFGIDL-DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFR----------SAKVRMAV  576 (718)
T ss_pred             eEEEEeeEEEeCCCCeeEeccEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEE----------CCceeEEE
Confidence            5789999999953   68999999998 9999999999999999999999998633333221          111 1111


Q ss_pred             eCHHHHHHH-hhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263          143 VSKEEFLQM-VDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF--  209 (286)
Q Consensus       143 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il--  209 (286)
                      +.+..+... +...........+   .+...+.+...          .......+++|++||+.+|++++.+|+++|+  
T Consensus       577 v~Q~~~~~l~~~~~~~~~~~~~~---~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE  653 (718)
T PLN03073        577 FSQHHVDGLDLSSNPLLYMMRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE  653 (718)
T ss_pred             EeccccccCCcchhHHHHHHHhc---CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            111100000 0000000000000   01112222222          2233456778999999999999988888888  


Q ss_pred             ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                          ||+.+.+.+.+.|.+..+ +...++|++...      ...||+++++++|.+
T Consensus       654 PT~~LD~~s~~~l~~~L~~~~g-tvIivSHd~~~i------~~~~drv~~l~~G~i  702 (718)
T PLN03073        654 PSNHLDLDAVEALIQGLVLFQG-GVLMVSHDEHLI------SGSVDELWVVSEGKV  702 (718)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence                777777777777766544 777789988775      367999999988875

>PLN03211 ABC transporter G-25; Provisional

Probab=99.61  E-value=5.8e-17  Score=156.18  Aligned_cols=188  Identities=15%  Similarity=0.185  Sum_probs=114.3

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc--ceeeeeecccCCCCCCcCCccee---
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS--LHFVVTATSRPMRPGEVNGKDYF---  141 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~--~~~~i~~~~r~~~~G~~~g~~~~---  141 (286)
                      .++|+++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|....  ..+.+.          ++|.++.   
T Consensus        70 ~~~~l~~~~~~~~iL~~vs~~i~~-Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~----------inG~~~~~~~  138 (659)
T PLN03211         70 KISDETRQIQERTILNGVTGMASP-GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTIL----------ANNRKPTKQI  138 (659)
T ss_pred             ccccccccCCCCeeeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEE----------ECCEECchhh
Confidence            46678888875  89999999998 999999999999999999999998752  123322          4454321   


Q ss_pred             -----eeCHHHHHHHhhccchhhhheeccccc---CccHH----HHHHHHh-----c---------CCcEEEEeCHHHHH
Q 043263          142 -----FVSKEEFLQMVDKNELLEYALVYGDYK---GIPKK----QIREYMA-----K---------GYDIVLRVDIQGAR  195 (286)
Q Consensus       142 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~----~i~~~~~-----~---------g~~~v~~~~~q~v~  195 (286)
                           ++.++.  .........++..+.....   ....+    .+++.++     .         ....+++|++||+.
T Consensus       139 ~~~i~yv~Q~~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~  216 (659)
T PLN03211        139 LKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS  216 (659)
T ss_pred             ccceEEECccc--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHH
Confidence                 111000  0000111122221111110   11111    1222221     1         11247789999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH--HHH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD--SAV  265 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~--~~~  265 (286)
                      +|++++.+|+++++      ||+.+...+.+.|++.  .+.|...+.|+++...     ...+|+|+++++|++.  ...
T Consensus       217 ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i-----~~~~D~iilL~~G~iv~~G~~  291 (659)
T PLN03211        217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV-----YQMFDSVLVLSEGRCLFFGKG  291 (659)
T ss_pred             HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH-----HHhhceEEEecCCcEEEECCH
Confidence            99999988888777      7776677777766643  2447777788876311     3679999999988652  233


Q ss_pred             HHHHHHHHH
Q 043263          266 KLVESVIDA  274 (286)
Q Consensus       266 ~~l~~~i~~  274 (286)
                      +++...++.
T Consensus       292 ~~~~~~f~~  300 (659)
T PLN03211        292 SDAMAYFES  300 (659)
T ss_pred             HHHHHHHHH
Confidence            444444443

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=9.1e-16  Score=125.61  Aligned_cols=178  Identities=14%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++||+.+..+   +|.++++.+.+ |++.+|+||||||||||++.|+|+-. |         .++.|+  ++|+|+..
T Consensus         4 L~I~dLhv~v~~~keILkgvnL~v~~-GEvhaiMGPNGsGKSTLa~~i~G~p~-Y---------~Vt~G~I~~~GedI~~   72 (251)
T COG0396           4 LEIKDLHVEVEGKKEILKGVNLTVKE-GEVHAIMGPNGSGKSTLAYTIMGHPK-Y---------EVTEGEILFDGEDILE   72 (251)
T ss_pred             eEEeeeEEEecCchhhhcCcceeEcC-CcEEEEECCCCCCHHHHHHHHhCCCC-c---------eEecceEEECCccccc
Confidence            345566655552   79999999998 99999999999999999999999732 1         145676  78999988


Q ss_pred             eCHHHHHHH-----hhccc------hhhhheecccc-cC------ccHHHHHHH----------HhcCC-cEEEEeCHHH
Q 043263          143 VSKEEFLQM-----VDKNE------LLEYALVYGDY-KG------IPKKQIREY----------MAKGY-DIVLRVDIQG  193 (286)
Q Consensus       143 ~~~~~~~~~-----i~~~~------~~~~~~~~~~~-~~------~~~~~i~~~----------~~~g~-~~v~~~~~q~  193 (286)
                      ++.++....     ++.+.      ..+......+. ++      ...+.+++.          +.+.. .-+++|++.|
T Consensus        73 l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR  152 (251)
T COG0396          73 LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR  152 (251)
T ss_pred             CCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence            887764442     11110      01111111010 00      001122222          22221 3466899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ..++..++-+|.+.||      ||.++.+.+.+-+....  +.+...|+|.-.-.    . .-..|+|.++-+|+|
T Consensus       153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll----~-~i~pD~vhvl~~GrI  223 (251)
T COG0396         153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL----D-YIKPDKVHVLYDGRI  223 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH----h-hcCCCEEEEEECCEE
Confidence            9999988889999999      66665666655554422  22556777744331    1 123577777766654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.59  E-value=2.1e-16  Score=148.47  Aligned_cols=178  Identities=12%  Similarity=0.083  Sum_probs=111.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcce---
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDY---  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~---  140 (286)
                      .++++|+++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|+.+. ..+.+.          ++|.++   
T Consensus       260 ~l~~~~l~~~~~~~~il~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~----------~~g~~~~~~  328 (490)
T PRK10938        260 RIVLNNGVVSYNDRPILHNLSWQVNP-GEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT----------LFGRRRGSG  328 (490)
T ss_pred             eEEEeceEEEECCeeEEeeceEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE----------EecccCCCC
Confidence            4889999999975  79999999998 999999999999999999999997642 122222          333321   


Q ss_pred             ----------eeeCHHHHHHHhhccchhhhheecc-----cccC-cc---HHHHHHHH----------hcCCcEEEEeCH
Q 043263          141 ----------FFVSKEEFLQMVDKNELLEYALVYG-----DYKG-IP---KKQIREYM----------AKGYDIVLRVDI  191 (286)
Q Consensus       141 ----------~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~-~~---~~~i~~~~----------~~g~~~v~~~~~  191 (286)
                                .++.++. ..........++....+     ..+. ..   .+.+.+.+          ......+++|++
T Consensus       329 ~~~~~~~~~i~~v~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  407 (490)
T PRK10938        329 ETIWDIKKHIGYVSSSL-HLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQ  407 (490)
T ss_pred             CCHHHHHhhceEECHHH-HhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHH
Confidence                      1111110 00000000011111100     0010 11   11222222          122245667899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVK-NFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i  261 (286)
                      |++.+|++++.+|+++|+      ||+.+...+.+.|.+.   +..+...++|+++..      .. .||+++++++|++
T Consensus       408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~------~~~~~d~v~~l~~G~i  481 (490)
T PRK10938        408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA------PACITHRLEFVPDGDI  481 (490)
T ss_pred             HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh------hhhhheeEEEecCCce
Confidence            999999999988888888      7777777777766653   222467779988774      23 4899999999976


Q ss_pred             H
Q 043263          262 D  262 (286)
Q Consensus       262 ~  262 (286)
                      .
T Consensus       482 ~  482 (490)
T PRK10938        482 Y  482 (490)
T ss_pred             E
Confidence            3

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.59  E-value=2.3e-16  Score=152.17  Aligned_cols=185  Identities=12%  Similarity=-0.000  Sum_probs=110.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceee--e
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF--V  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~--~  143 (286)
                      +.++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++....+.+..... ...+.+.......  .
T Consensus         4 l~i~~ls~~~~~~~il~~is~~i~~-Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~~~~~l~q~~~~~~~~   81 (635)
T PRK11147          4 ISIHGAWLSFSDAPLLDNAELHIED-NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-LIVARLQQDPPRNVEG   81 (635)
T ss_pred             EEEeeEEEEeCCceeEeCcEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-CEEEEeccCCCCCCCC
Confidence            567899999976  78999999998 9999999999999999999999997643333321100 0000000000000  0


Q ss_pred             C-HHHHH----HH------h-------hccchhhhheecc-------cccC-ccHHHHHHHHh-------cCCcEEEEeC
Q 043263          144 S-KEEFL----QM------V-------DKNELLEYALVYG-------DYKG-IPKKQIREYMA-------KGYDIVLRVD  190 (286)
Q Consensus       144 ~-~~~~~----~~------i-------~~~~~~~~~~~~~-------~~~~-~~~~~i~~~~~-------~g~~~v~~~~  190 (286)
                      . .+.+.    ..      .       ......++...+.       ...+ .....+..++.       .....+++|+
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe  161 (635)
T PRK11147         82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW  161 (635)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence            0 00000    00      0       0000000000000       0000 01122333321       1234577899


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++|++++.+|+++|+      ||+.+...+.+.|.+..+ +...++|+....      ...||+|+++++|++
T Consensus       162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~-tvlivsHd~~~l------~~~~d~i~~L~~G~i  231 (635)
T PRK11147        162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG-SIIFISHDRSFI------RNMATRIVDLDRGKL  231 (635)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCHHHH------HHhcCeEEEEECCEE
Confidence            9999999999988888888      787777777777776543 777789988764      367999999988865

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.59  E-value=2.3e-16  Score=148.43  Aligned_cols=173  Identities=12%  Similarity=0.188  Sum_probs=111.7

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .++++|+++   ..++++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++...+
T Consensus       257 ~l~~~~l~~---~~l~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~G~~~------------p~~G~I~~~g~~i~~~~  320 (501)
T PRK10762        257 RLKVDNLSG---PGVNDVSFTLRK-GEILGVSGLMGAGRTELMKVLYGALP------------RTSGYVTLDGHEVVTRS  320 (501)
T ss_pred             EEEEeCccc---CCcccceEEEcC-CcEEEEecCCCCCHHHHHHHHhCCCC------------CCceEEEECCEECCCCC
Confidence            367788875   258999999998 99999999999999999999999986            55555  4555442222


Q ss_pred             HHH-HHHH---hhcc----------chhhhheec-----ccccC-cc----HHHHHHHHhc----------CCcEEEEeC
Q 043263          145 KEE-FLQM---VDKN----------ELLEYALVY-----GDYKG-IP----KKQIREYMAK----------GYDIVLRVD  190 (286)
Q Consensus       145 ~~~-~~~~---i~~~----------~~~~~~~~~-----~~~~~-~~----~~~i~~~~~~----------g~~~v~~~~  190 (286)
                      ... .+..   +.+.          ...++..+.     ...++ ..    .+.+.+.+..          ....+++|+
T Consensus       321 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe  400 (501)
T PRK10762        321 PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGN  400 (501)
T ss_pred             HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence            111 1110   1111          111211110     00001 11    1122333221          123566889


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++.+|++++.+|+++|+      ||+.+...+.+.|.+..  +.+...++|+++..      ...||+|+++++|++
T Consensus       401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~------~~~~d~v~~l~~G~i  473 (501)
T PRK10762        401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEV------LGMSDRILVMHEGRI  473 (501)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHH------HhhCCEEEEEECCEE
Confidence            9999999999988888888      78877777777766532  34667779988875      468999999998875

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.59  E-value=5.6e-16  Score=127.62  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=33.6

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++++++.+.+ |++++|+||||||||||+++|+|++.
T Consensus         7 il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166         7 VLKGLNFAAER-GEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             eecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            57777788887 99999999999999999999999986

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.58  E-value=8.3e-16  Score=144.94  Aligned_cols=173  Identities=12%  Similarity=0.140  Sum_probs=111.4

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .+.++|+++  . .|+++++.+.+ |++++|+||||||||||+++|+|+++            |..|+  ++|.++...+
T Consensus       268 ~l~~~~l~~--~-~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~i~Gl~~------------p~~G~i~~~g~~i~~~~  331 (510)
T PRK15439        268 VLTVEDLTG--E-GFRNISLEVRA-GEILGLAGVVGAGRTELAETLYGLRP------------ARGGRIMLNGKEINALS  331 (510)
T ss_pred             eEEEeCCCC--C-CccceeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCC------------CCCcEEEECCEECCCCC
Confidence            477888884  2 58999999998 99999999999999999999999976            45554  4454332222


Q ss_pred             HHHH-HHH---hhcc----------chhhhheec--cc--cc-Cc--cHHHHHHHHh----------cCCcEEEEeCHHH
Q 043263          145 KEEF-LQM---VDKN----------ELLEYALVY--GD--YK-GI--PKKQIREYMA----------KGYDIVLRVDIQG  193 (286)
Q Consensus       145 ~~~~-~~~---i~~~----------~~~~~~~~~--~~--~~-~~--~~~~i~~~~~----------~g~~~v~~~~~q~  193 (286)
                      .... +..   +.+.          ...++....  ..  .+ ..  ..+.+.+++.          .....+++|++|+
T Consensus       332 ~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr  411 (510)
T PRK15439        332 TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQK  411 (510)
T ss_pred             HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHH
Confidence            1111 100   1111          111111100  00  00 00  1112222221          1224577899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i------~~~~d~i~~l~~G~i  481 (510)
T PRK15439        412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEI------EQMADRVLVMHQGEI  481 (510)
T ss_pred             HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888888      8888787777766543  234777889988875      367999999988865

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.57  E-value=1.3e-15  Score=123.29  Aligned_cols=139  Identities=14%  Similarity=0.218  Sum_probs=87.5

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCc-------ceeeeCHHHHHHHh
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGK-------DYFFVSKEEFLQMV  152 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~-------~~~~~~~~~~~~~i  152 (286)
                      +++++++.+.+ |++++|+||||||||||++++...    .+.+.          ++|.       .+.++.+.      
T Consensus        10 ~l~~isl~i~~-G~~~~l~G~nG~GKSTLl~~il~~----~G~v~----------~~~~~~~~~~~~~~~~~q~------   68 (176)
T cd03238          10 NLQNLDVSIPL-NVLVVVTGVSGSGKSTLVNEGLYA----SGKAR----------LISFLPKFSRNKLIFIDQL------   68 (176)
T ss_pred             eecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhhc----CCcEE----------ECCcccccccccEEEEhHH------
Confidence            57777888887 999999999999999999998531    11111          1221       11111110      


Q ss_pred             hccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCC--CcEEEE------EecCCHHHHHHHHHH
Q 043263          153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD--SAVFVF------LAAESEMALVERLVE  224 (286)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~--~~~~Il------ld~~~~~~l~~rl~~  224 (286)
                         .+++.   +    ++...    .+......+.++++|++.++++++.+  |+++|+      ||+.+.+.+.+.+.+
T Consensus        69 ---~~l~~---~----~L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~  134 (176)
T cd03238          69 ---QFLID---V----GLGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG  134 (176)
T ss_pred             ---HHHHH---c----CCCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence               01110   0    00000    01222345677899999999999988  777777      666666666666654


Q ss_pred             h--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          225 R--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       225 r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      .  .+.+...++|++..       ...||+++++++|.
T Consensus       135 ~~~~g~tvIivSH~~~~-------~~~~d~i~~l~~g~  165 (176)
T cd03238         135 LIDLGNTVILIEHNLDV-------LSSADWIIDFGPGS  165 (176)
T ss_pred             HHhCCCEEEEEeCCHHH-------HHhCCEEEEECCCC
Confidence            3  23466777888765       35699999998764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.57  E-value=8.8e-16  Score=154.32  Aligned_cols=180  Identities=13%  Similarity=0.212  Sum_probs=121.4

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      +..++++|.+|+.+.     .|+++++.+++ |+.++|+|+.|||||+|+.+|.|.++            ..+|.  +.|
T Consensus       516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~-G~lvaVvG~vGsGKSSLL~AiLGEm~------------~~sG~v~v~g  582 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKK-GQLVAVVGPVGSGKSSLLSAILGEMP------------KLSGSVAVNG  582 (1381)
T ss_pred             CceEEEeeeeEecCCCCCcccccceeEEecC-CCEEEEECCCCCCHHHHHHHHhcCcc------------cccceEEEcC
Confidence            345777888887653     68999999998 99999999999999999999999986            44444  445


Q ss_pred             cceeeeCHHHHHHHhhccchhhhheecccccCccH-HH-H--------HHHHhcCCc--------EEEEeCHHHHHHHHH
Q 043263          138 KDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK-KQ-I--------REYMAKGYD--------IVLRVDIQGARTLRR  199 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~-i--------~~~~~~g~~--------~v~~~~~q~v~iara  199 (286)
                      . +.+.+++.+   +.++.+ .+++.+|..|...+ +. +        -+.++.|..        .+.|||+||+.+|||
T Consensus       583 s-iaYv~Q~pW---I~ngTv-reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA  657 (1381)
T KOG0054|consen  583 S-VAYVPQQPW---IQNGTV-RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA  657 (1381)
T ss_pred             e-EEEeccccH---hhCCcH-HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence            4 444444332   122222 33344554332110 00 1        122344444        455789999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHH--HHHHHH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS--AVKLVE  269 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~--~~~~l~  269 (286)
                      ++.+.++++|      +|+..-..+.++...  ..+.|.+.++|.+..       +..||.|+++++|++.+  .++++.
T Consensus       658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~-------L~~ad~Iivl~~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF-------LPHADQIIVLKDGKIVESGTYEELL  730 (1381)
T ss_pred             HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhh-------hhhCCEEEEecCCeEecccCHHHHH
Confidence            9999999999      666655566665443  133477888997776       68999999999998733  355554

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.57  E-value=2e-15  Score=127.47  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee-------eeCHHHHHHHhhccchh
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF-------FVSKEEFLQMVDKNELL  158 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~-------~~~~~~~~~~i~~~~~~  158 (286)
                      +.+ |++++|+|+||||||||+++|+|+++            |..|+  ++|.++.       ++.+...-.........
T Consensus         3 i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~   69 (223)
T TIGR03771         3 ADK-GELLGLLGPNGAGKTTLLRAILGLIP------------PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVA   69 (223)
T ss_pred             cCC-CcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCccchHhhCcEEEecccccccCCCCccHH
Confidence            444 99999999999999999999999986            55555  5554421       11110000000000011


Q ss_pred             hhheec-----ccccC---ccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263          159 EYALVY-----GDYKG---IPKKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE  215 (286)
Q Consensus       159 ~~~~~~-----~~~~~---~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~  215 (286)
                      ++....     +....   ...+.+.++++         .....+.+|++|++.++++++.+|+++|+      ||+.+.
T Consensus        70 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~  149 (223)
T TIGR03771        70 HTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ  149 (223)
T ss_pred             HHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            111000     00000   01112232222         22234567889999999999999988888      888777


Q ss_pred             HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          216 MALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       216 ~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+.+.|.+.  .+.+...++|+++..      ...||+++++ +|++
T Consensus       150 ~~l~~~l~~~~~~~~tvii~sH~~~~~------~~~~d~i~~l-~G~i  190 (223)
T TIGR03771       150 ELLTELFIELAGAGTAILMTTHDLAQA------MATCDRVVLL-NGRV  190 (223)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEE-CCEE
Confidence            7777777643  234677778988864      3679999988 5765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.57  E-value=8e-16  Score=146.59  Aligned_cols=167  Identities=16%  Similarity=0.179  Sum_probs=102.0

Q ss_pred             HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-----------
Q 043263           71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-----------  136 (286)
Q Consensus        71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-----------  136 (286)
                      +++++.|+.   .|++++ .+.+ |+++||+|||||||||++++|+|++.            |+.|++.           
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~-Gev~gLvG~NGaGKSTLlkiL~G~l~------------p~~G~i~~~~~~~~~~~~  142 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKE-GKVTGILGPNGIGKTTAVKILSGELI------------PNLGDYEEEPSWDEVLKR  142 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCC-CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCccccCCCcHHHHHHH
Confidence            348889975   588888 6666 99999999999999999999999986            6666643           


Q ss_pred             --CcceeeeCHHHHHHH-h-----hcc-chhhh---heecccccCcc-HHHHHHH---------HhcCCcEEEEeCHHHH
Q 043263          137 --GKDYFFVSKEEFLQM-V-----DKN-ELLEY---ALVYGDYKGIP-KKQIREY---------MAKGYDIVLRVDIQGA  194 (286)
Q Consensus       137 --g~~~~~~~~~~~~~~-i-----~~~-~~~~~---~~~~~~~~~~~-~~~i~~~---------~~~g~~~v~~~~~q~v  194 (286)
                        |.++.... ..+... +     .+. .....   ..+..++.... .+.+.+.         +......+++|++|++
T Consensus       143 ~~G~~l~~~~-~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv  221 (590)
T PRK13409        143 FRGTELQNYF-KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV  221 (590)
T ss_pred             hCChHHHHHH-HHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence              33221000 000000 0     000 00000   00001110000 1112222         2233345677899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      ++|++++.+|+++||      ||+.....+.+.|.+.. +.+...++|+++..      ...||+|+++.+
T Consensus       222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l------~~~~D~v~vl~~  286 (590)
T PRK13409        222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVL------DYLADNVHIAYG  286 (590)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence            999999988887777      66665666666555431 44677889998875      367999999875

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.56  E-value=7e-16  Score=160.50  Aligned_cols=170  Identities=12%  Similarity=0.196  Sum_probs=110.7

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      .+.++++++.+...|+++++.+++ |++++|+||||||||||+++|+|+++            |..|+  ++|. +.++.
T Consensus       428 ~~~~~~~s~~~~~~l~~i~l~i~~-G~~~~I~G~~GsGKSTLl~~l~G~~~------------~~~G~i~~~g~-iayv~  493 (1490)
T TIGR01271       428 GLFFSNFSLYVTPVLKNISFKLEK-GQLLAVAGSTGSGKSSLLMMIMGELE------------PSEGKIKHSGR-ISFSP  493 (1490)
T ss_pred             cccccccccccCcceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE-EEEEe
Confidence            356677776554479999999998 99999999999999999999999987            55565  3442 22222


Q ss_pred             HHHHHHHhhccchhhhheecccccCc-c-HH-----HHHH---HHhcCC--------cEEEEeCHHHHHHHHHHhCCCcE
Q 043263          145 KEEFLQMVDKNELLEYALVYGDYKGI-P-KK-----QIRE---YMAKGY--------DIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~-----~i~~---~~~~g~--------~~v~~~~~q~v~iaral~~~~~~  206 (286)
                      ++.+   +..+...+|.. ++..+.. . .+     .+.+   .++.|.        ..+.+|++||+++||+++.+|++
T Consensus       494 Q~~~---l~~~Ti~eNI~-~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i  569 (1490)
T TIGR01271       494 QTSW---IMPGTIKDNII-FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL  569 (1490)
T ss_pred             CCCc---cCCccHHHHHH-hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE
Confidence            2110   01112222222 2111100 0 00     0111   122232        35667899999999999999998


Q ss_pred             EEE------EecCCHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          207 FVF------LAAESEMALVERL-VER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl-~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||      ||+.+...+.+.+ ... .+.|...++|++..       ...||+|+++++|++
T Consensus       570 llLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~-------~~~ad~ii~l~~g~i  625 (1490)
T TIGR01271       570 YLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEH-------LKKADKILLLHEGVC  625 (1490)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHH-------HHhCCEEEEEECCEE
Confidence            888      7777777777653 332 34477888998877       356999999988754

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.56  E-value=1.1e-15  Score=133.81  Aligned_cols=178  Identities=15%  Similarity=0.134  Sum_probs=119.9

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      -..++++||.|.|..   -+-.+|+.+.. |++|.|+|.|||||||++++|.|++.            |++|+  +||.+
T Consensus       320 ~~~lelrnvrfay~~~~FhvgPiNl~ikr-GelvFliG~NGsGKST~~~LLtGL~~------------PqsG~I~ldg~p  386 (546)
T COG4615         320 WKTLELRNVRFAYQDNAFHVGPINLTIKR-GELVFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGKP  386 (546)
T ss_pred             ccceeeeeeeeccCcccceecceeeEEec-CcEEEEECCCCCcHHHHHHHHhcccC------------CCCCceeECCcc
Confidence            346999999999986   24566788886 99999999999999999999999997            99999  89999


Q ss_pred             eeeeCHHHHHHHhh---ccchhhhheecccccCccHHHHHHHH-----------hcCCc---EEEEeCHHHHHHHHHHhC
Q 043263          140 YFFVSKEEFLQMVD---KNELLEYALVYGDYKGIPKKQIREYM-----------AKGYD---IVLRVDIQGARTLRRILG  202 (286)
Q Consensus       140 ~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~g~~---~v~~~~~q~v~iaral~~  202 (286)
                      +...+.++++.++.   .+..+......+.- ..+.+.+..++           ..|..   .++-||+.|++++-+++.
T Consensus       387 V~~e~ledYR~LfSavFsDyhLF~~ll~~e~-~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE  465 (546)
T COG4615         387 VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG-KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE  465 (546)
T ss_pred             CCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc-CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence            98888888887652   11111111111111 02333333331           22221   244589999999999998


Q ss_pred             CCcEEEE----EecCCH--H----HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHH
Q 043263          203 DSAVFVF----LAAESE--M----ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       203 ~~~~~Il----ld~~~~--~----~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~  264 (286)
                      +.++++|    -|-++.  .    .+.-++++.+ .|+..|+|+=.-       ...||+++.+.+|++.|.
T Consensus       466 eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG-KTI~aIsHDd~Y-------F~~ADrll~~~~G~~~e~  529 (546)
T COG4615         466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG-KTIFAISHDDHY-------FIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC-CeEEEEecCchh-------hhhHHHHHHHhcCceeec
Confidence            9999998    232221  1    2223444544 488888774222       567899998888876543

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.55  E-value=1.6e-16  Score=126.85  Aligned_cols=175  Identities=19%  Similarity=0.215  Sum_probs=114.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC-ccee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG-KDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g-~~~~  141 (286)
                      .+.++||+.+|++  ++.++++.+.+ |+.-+|+||||+||||++..|.|.-.            |+.|+  ++| .|+.
T Consensus         5 iL~~~~vsVsF~GF~Aln~ls~~v~~-Gelr~lIGpNGAGKTT~mD~ItGKtr------------p~~G~v~f~g~~dl~   71 (249)
T COG4674           5 ILYLDGVSVSFGGFKALNDLSFSVDP-GELRVLIGPNGAGKTTLMDVITGKTR------------PQEGEVLFDGDTDLT   71 (249)
T ss_pred             eEEEeceEEEEcceeeeeeeEEEecC-CeEEEEECCCCCCceeeeeeecccCC------------CCcceEEEcCchhhc
Confidence            3567889999998  89999999998 99999999999999999999999875            77777  555 5666


Q ss_pred             eeCHHHHHHH-----hhccchhhhheeccccc------------------CccHHHHHHHHh---------cCCcEEEEe
Q 043263          142 FVSKEEFLQM-----VDKNELLEYALVYGDYK------------------GIPKKQIREYMA---------KGYDIVLRV  189 (286)
Q Consensus       142 ~~~~~~~~~~-----i~~~~~~~~~~~~~~~~------------------~~~~~~i~~~~~---------~g~~~v~~~  189 (286)
                      ..+...+..+     ++....+++..++.|+.                  ....+.+++.+.         .-...++.|
T Consensus        72 ~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHG  151 (249)
T COG4674          72 KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHG  151 (249)
T ss_pred             cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccc
Confidence            5555444332     23344444433333310                  111223443321         112456789


Q ss_pred             CHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          190 DIQGARTLRRILGDSAVFVFLAAES-------EMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|++.|.--+..+|.+ ++||.|.       .+..-+-|... +..+..++.|++...      ...|++|-|++.|++
T Consensus       152 qKQwLEIGMll~Q~P~l-LLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fv------r~~A~~VTVlh~G~V  224 (249)
T COG4674         152 QKQWLEIGMLLAQDPKL-LLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV------REIADKVTVLHEGSV  224 (249)
T ss_pred             hhhhhhhheeeccCCcE-EEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHH------HHhhheeEEEeccce
Confidence            99999999877755555 5555543       11222233332 234777888988875      367899999888764

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.55  E-value=5.3e-14  Score=117.37  Aligned_cols=178  Identities=24%  Similarity=0.319  Sum_probs=103.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee--------eeCHHHHHHHhhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF--------FVSKEEFLQMVDK  154 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~--------~~~~~~~~~~i~~  154 (286)
                      ..+|||+|++||||||++++|.++ +...++.....+.. ..|.        .+|.++.        .+++..++..+.+
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~~-g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~   83 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAEM-GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFS   83 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC-CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhC
Confidence            478999999999999999999974 21111111000000 0110        2333332        1344444444322


Q ss_pred             c-chhh--hheecccccCccHHHHHHHHhcCCc-EEEEeCHHHHHHHHHH-hCCCcEEEEEecCCHHHHHHHHHHhcCCC
Q 043263          155 N-ELLE--YALVYGDYKGIPKKQIREYMAKGYD-IVLRVDIQGARTLRRI-LGDSAVFVFLAAESEMALVERLVERKTEN  229 (286)
Q Consensus       155 ~-~~~~--~~~~~~~~~~~~~~~i~~~~~~g~~-~v~~~~~q~v~iaral-~~~~~~~Illd~~~~~~l~~rl~~r~~~t  229 (286)
                      + ....  +...++..+..-.+.+......+.. +++++..    +..+. ....+.+++++++ .+.+.+|+.+|++.+
T Consensus        84 ~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pL----L~e~~~~~~~d~ii~V~a~-~e~~~~Rl~~R~~~s  158 (208)
T PRK14731         84 DPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAI----LFESGGDAGLDFIVVVAAD-TELRLERAVQRGMGS  158 (208)
T ss_pred             CHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeee----eeecCchhcCCeEEEEECC-HHHHHHHHHHcCCCC
Confidence            2 1111  1122222221112233333334433 4444432    11111 1233677778776 888999999998878


Q ss_pred             HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      .+.+..|++.+..+.++...+|.+|.| +|+++++..++.++++.+.
T Consensus       159 ~e~~~~Ri~~q~~~~~~~~~ad~vI~N-~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        159 REEIRRRIAAQWPQEKLIERADYVIYN-NGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             HHHHHHHHHHcCChHHHHHhCCEEEEC-CCCHHHHHHHHHHHHHHHH
Confidence            899999999888777767789998865 4899999999999987764

>PLN03073 ABC transporter F family; Provisional

Probab=99.54  E-value=7.6e-16  Score=149.44  Aligned_cols=184  Identities=14%  Similarity=0.051  Sum_probs=110.6

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC---cceeeeeecccCCCCCCcCCcc
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD---SLHFVVTATSRPMRPGEVNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~i~~~~r~~~~G~~~g~~  139 (286)
                      ...|.++|++++|+.  .|+++++.+.+ |+++||+|+||||||||+++|+|...   +..+.+.+...     +..|.+
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~-Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q-----~~~g~~  248 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAF-GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ-----EVVGDD  248 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec-----cCCCCC
Confidence            345899999999976  79999999998 99999999999999999999998531   11122221110     011222


Q ss_pred             eeee------CHHH---HHH---Hhhcc-chhhh----heecccccCccHH-----------------------HHHHH-
Q 043263          140 YFFV------SKEE---FLQ---MVDKN-ELLEY----ALVYGDYKGIPKK-----------------------QIREY-  178 (286)
Q Consensus       140 ~~~~------~~~~---~~~---~i~~~-~~~~~----~~~~~~~~~~~~~-----------------------~i~~~-  178 (286)
                      ....      ....   +..   ...+. .....    ........+...+                       .+... 
T Consensus       249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L  328 (718)
T PLN03073        249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL  328 (718)
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            1100      0000   000   01110 00000    0000000011110                       11111 


Q ss_pred             ---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 043263          179 ---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREE  243 (286)
Q Consensus       179 ---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~  243 (286)
                               .......+++|++|++++|++++.+|+++||      ||+.+...+.+.|.+.+ .+...++|+....   
T Consensus       329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-~tviivsHd~~~l---  404 (718)
T PLN03073        329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP-KTFIVVSHAREFL---  404 (718)
T ss_pred             HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHH---
Confidence                     1223356778999999999999988888887      77776777777777664 3777889987764   


Q ss_pred             hhccCCCcEEEECCCCCH
Q 043263          244 VQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       244 ~~~~~~~d~viv~~~G~i  261 (286)
                         ...||+|+++++|++
T Consensus       405 ---~~~~d~i~~l~~g~i  419 (718)
T PLN03073        405 ---NTVVTDILHLHGQKL  419 (718)
T ss_pred             ---HHhCCEEEEEECCEE
Confidence               357999999988865

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.54  E-value=6.7e-14  Score=115.58  Aligned_cols=175  Identities=15%  Similarity=0.163  Sum_probs=107.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC-------cCCccee---eeCHHHHHHHhhccch-hh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE-------VNGKDYF---FVSKEEFLQMVDKNEL-LE  159 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~-------~~g~~~~---~~~~~~~~~~i~~~~~-~~  159 (286)
                      +.+|||+|+.||||||++++|...++...++.....+.. ..+.       .+|.++.   .+++..++..+..+.- ..
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~   85 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKK   85 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHH
Confidence            468999999999999999999865432222211111100 0010       2333331   2455555555422211 11


Q ss_pred             --hheecccccCccHHHHHHHHhcC--CcEEEEeCHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263          160 --YALVYGDYKGIPKKQIREYMAKG--YDIVLRVDIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTENREE  232 (286)
Q Consensus       160 --~~~~~~~~~~~~~~~i~~~~~~g--~~~v~~~~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~  232 (286)
                        +...++.    ..+.+.+.+...  ..++++..+  +  ..+.   ....+.+++++++ .+..++|+.+|++.+.+.
T Consensus        86 ~Le~i~HP~----V~~~~~~~~~~~~~~~vv~eipL--L--~E~~~~~~~~~D~vi~V~a~-~e~ri~Rl~~Rd~~s~~~  156 (204)
T PRK14733         86 WLEDYLHPV----INKEIKKQVKESDTVMTIVDIPL--L--GPYNFRHYDYLKKVIVIKAD-LETRIRRLMERDGKNRQQ  156 (204)
T ss_pred             HHHhhhhHH----HHHHHHHHHHhcCCCeEEEEech--h--hhccCchhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHH
Confidence              1122221    222333333322  234555543  1  1221   1123677888886 888889999998889999


Q ss_pred             HHHHHHHHHHHhhccCCCcEEEECCCC-CHHHHHHHHHHHHHHHH
Q 043263          233 LLVRIATAREEVQHVKNFDYVVVNAEG-KLDSAVKLVESVIDAEK  276 (286)
Q Consensus       233 i~~rl~~~~~~~~~~~~~d~viv~~~G-~i~~~~~~l~~~i~~~~  276 (286)
                      +..|++.|+++.++...||.||.|+ | +++++..++.+++++.+
T Consensus       157 a~~ri~~Q~~~eek~~~aD~VI~N~-g~~~~~l~~~~~~~~~~~~  200 (204)
T PRK14733        157 AVAFINLQISDKEREKIADFVIDNT-ELTDQELESKLITTINEIT  200 (204)
T ss_pred             HHHHHHhCCCHHHHHHhCCEEEECc-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999888899999999665 8 99999999999988764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.54  E-value=1.8e-15  Score=132.82  Aligned_cols=181  Identities=13%  Similarity=0.117  Sum_probs=122.9

Q ss_pred             HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .+.++|++..|+.      +++++++++.+ |++++|+|.||||||-.+..+.++++.....       .-+|.  ++|.
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~-GEtlAlVGESGSGKSvTa~sim~LLp~~~~~-------~~sg~i~f~G~   77 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEA-GETLALVGESGSGKSVTALSILGLLPSPAAA-------HPSGSILFDGE   77 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecC-CCEEEEEecCCCCccHHHHHHHHhcCCCccc-------CccceeEEcCh
Confidence            4678888888862      68999999998 9999999999999999999999998622111       11333  6777


Q ss_pred             ceeeeCHHHHHHHh-------hccch-------------hhhheecccccCccHHHHH----------------HHHhcC
Q 043263          139 DYFFVSKEEFLQMV-------DKNEL-------------LEYALVYGDYKGIPKKQIR----------------EYMAKG  182 (286)
Q Consensus       139 ~~~~~~~~~~~~~i-------~~~~~-------------~~~~~~~~~~~~~~~~~i~----------------~~~~~g  182 (286)
                      ++...+..+++...       .|...             .|-...   .++...+..+                ..+..-
T Consensus        78 dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~---Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y  154 (534)
T COG4172          78 DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL---HRGLSRAAARARALELLELVGIPEPEKRLDAY  154 (534)
T ss_pred             hhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence            77666666665532       11111             111111   1222222111                114444


Q ss_pred             CcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          183 YDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                      ..-+++|++||+.||-|+...|+++|-      ||..-...+.+-|+   ++-+.....|+|++...      .+.||+|
T Consensus       155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iV------r~~ADrV  228 (534)
T COG4172         155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIV------RKFADRV  228 (534)
T ss_pred             CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHH------HHhhhhE
Confidence            567889999999999999977777777      55554555555444   44455777889999986      4789999


Q ss_pred             EECCCCCHHHH
Q 043263          254 VVNAEGKLDSA  264 (286)
Q Consensus       254 iv~~~G~i~~~  264 (286)
                      .|+..|.+.|.
T Consensus       229 ~VM~~G~ivE~  239 (534)
T COG4172         229 YVMQHGEIVET  239 (534)
T ss_pred             EEEeccEEeec
Confidence            99999987554

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.53  E-value=8.1e-16  Score=136.81  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             EEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHH--HHHHhhccc------hhhhheeccc
Q 043263           97 ISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEE--FLQMVDKNE------LLEYALVYGD  166 (286)
Q Consensus        97 l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~--~~~~i~~~~------~~~~~~~~~~  166 (286)
                      |+||||||||||+++|+|++.            |.+|+  ++|.++.......  +....++..      ..++..+...
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~   68 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ------------PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLK   68 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC------------CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHh
Confidence            689999999999999999986            55555  5565443222110  000011111      1222111101


Q ss_pred             ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--
Q 043263          167 YKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--  225 (286)
Q Consensus       167 ~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--  225 (286)
                      .++...    +.+.+++         ......+++|++|++++||+++.+|+++|+      ||+.+...+.+.|.+.  
T Consensus        69 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~  148 (325)
T TIGR01187        69 MRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE  148 (325)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            111111    1222222         222345678899999999999988888888      7777677776666542  


Q ss_pred             -cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          226 -KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       226 -~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                       .+.+...++|++...      ...||+|+++++|++
T Consensus       149 ~~g~tiiivTHd~~e~------~~~~d~i~vl~~G~i  179 (325)
T TIGR01187       149 QLGITFVFVTHDQEEA------MTMSDRIAIMRKGKI  179 (325)
T ss_pred             hcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence             244777889988875      478999999998875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.53  E-value=1.3e-13  Score=113.81  Aligned_cols=173  Identities=22%  Similarity=0.256  Sum_probs=104.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccchh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNELL  158 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~~  158 (286)
                      +.+|+|+|++||||||+++.|.. ++...++.....+. ...|.        .+|.++.    .+++..++..+..+...
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            45799999999999999999987 44222222221111 11111        2333322    24566666655333221


Q ss_pred             -h--hheecccccCccHHHHHHHHhcC---CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263          159 -E--YALVYGDYKGIPKKQIREYMAKG---YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREE  232 (286)
Q Consensus       159 -~--~~~~~~~~~~~~~~~i~~~~~~g---~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~  232 (286)
                       .  +...++.    ..+.+.+.+...   ..++++..+-.-.-...   ..+.+++++++ .+...+|+.+|++.+.+.
T Consensus        81 ~~~L~~i~hP~----v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~---~~D~vi~V~a~-~e~~~~Rl~~R~~~s~e~  152 (194)
T PRK00081         81 RKKLEAILHPL----IREEILEQLQEAESSPYVVLDIPLLFENGLEK---LVDRVLVVDAP-PETQLERLMARDGLSEEE  152 (194)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHcccCCEEEEEehHhhcCCchh---hCCeEEEEECC-HHHHHHHHHHcCCCCHHH
Confidence             1  1112211    122333333222   34556655321111122   33688888887 888889999998889999


Q ss_pred             HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      +..|+..+.+..++...+|.||.| +|+++++..++.++++.
T Consensus       153 ~~~ri~~Q~~~~~~~~~ad~vI~N-~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        153 AEAIIASQMPREEKLARADDVIDN-NGDLEELRKQVERLLQE  193 (194)
T ss_pred             HHHHHHHhCCHHHHHHhCCEEEEC-CCCHHHHHHHHHHHHHh
Confidence            999999887777767889988865 48999999999988754

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.52  E-value=2.1e-13  Score=115.65  Aligned_cols=184  Identities=18%  Similarity=0.120  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCcce----eeeCHHHHHHHhhccch-h
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDY----FFVSKEEFLQMVDKNEL-L  158 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~----~~~~~~~~~~~i~~~~~-~  158 (286)
                      .+|||+|+.||||||++++|...++...++.....+. ...|.        .+|..+    ..+++..++..+..+.- .
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            5899999999999999999987543222221111111 11111        123222    12566666665432211 1


Q ss_pred             --hhheecccccCccHHHHHH--------HH-hcCC-cEEEEeCHHHHHHHHHH-hC-CCcEEEEEecCCHHHHHHHHHH
Q 043263          159 --EYALVYGDYKGIPKKQIRE--------YM-AKGY-DIVLRVDIQGARTLRRI-LG-DSAVFVFLAAESEMALVERLVE  224 (286)
Q Consensus       159 --~~~~~~~~~~~~~~~~i~~--------~~-~~g~-~~v~~~~~q~v~iaral-~~-~~~~~Illd~~~~~~l~~rl~~  224 (286)
                        -+...++..+....+.+.+        .+ ..+. .++++...-    ..+- .. ..+.+++++++ .+...+||.+
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL----~E~~~~~~~~D~iv~V~a~-~e~ri~RL~~  156 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTL----FETKTFTYFVSASVVVSCS-EERQIERLRK  156 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechh----hccCchhhcCCeEEEEECC-HHHHHHHHHH
Confidence              1112222211111111211        01 1222 455565431    1221 11 23677778876 8888899999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC-CCHHHHHHHHHHHHHHHHhcccc
Q 043263          225 RKTENREELLVRIATAREEVQHVKNFDYVVVNAE-GKLDSAVKLVESVIDAEKAKVRQ  281 (286)
Q Consensus       225 r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~~~~~~~~  281 (286)
                      |++.+.+.+..|+..|....++...||.||.|+. |+++++..++.++++.++.+++.
T Consensus       157 R~g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~~~~~~  214 (244)
T PTZ00451        157 RNGFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMSRQSNK  214 (244)
T ss_pred             cCCCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            9888999999999998888887889999986542 79999999999999888766553

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.52  E-value=8.6e-14  Score=114.77  Aligned_cols=178  Identities=20%  Similarity=0.230  Sum_probs=104.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee----eeCHHHHHHHhhccch-h-
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-L-  158 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-~-  158 (286)
                      ++||+|++||||||++++|.+. +....+.....+.. ..|.        .+|.++.    .+++..++..+..+.- . 
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~-g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEEL-GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHHC-CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            4899999999999999999874 32222222211111 1111        2333332    2455555555422211 1 


Q ss_pred             -hhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263          159 -EYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRI  237 (286)
Q Consensus       159 -~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl  237 (286)
                       -+...++..+....+.+.. ..++..++++...-.-  . .+....+.+++++++ .+...+|+.+|++.+.+.+..|+
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~-~~~~~~vi~e~pLL~E--~-~~~~~~D~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri  154 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQT-TAEGKLVIWEVPLLFE--T-DAYTLCDATVTVDSD-PEESILRTISRDGMKKEDVLARI  154 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHH-HhcCCcEEEEeeeeeE--c-CchhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence             1112222221111111111 2233445555432110  0 011123788889987 77888999999888999999999


Q ss_pred             HHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      ..+....++...||.||.|+ |+++++..++.++++...++
T Consensus       155 ~~Q~~~~~k~~~aD~vI~N~-~~~~~l~~~v~~l~~~~~~~  194 (196)
T PRK14732        155 ASQLPITEKLKRADYIVRND-GNREGLKEECKILYSTLLKK  194 (196)
T ss_pred             HHcCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHHHHHh
Confidence            98887777788999988655 79999999999998877654

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.50  E-value=2e-13  Score=112.67  Aligned_cols=172  Identities=18%  Similarity=0.200  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee-----eeCHHHHHHHhhccch-
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF-----FVSKEEFLQMVDKNEL-  157 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~-----~~~~~~~~~~i~~~~~-  157 (286)
                      .+|+|+|++||||||+++.|...++...++.....+.. ..|.        .+|.++.     .+++..+...+..+.- 
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            47999999999999999999987543333222211111 1111        1232221     2344444444322111 


Q ss_pred             hh--hheecccccCccHHHHHHHHhc---CCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263          158 LE--YALVYGDYKGIPKKQIREYMAK---GYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREE  232 (286)
Q Consensus       158 ~~--~~~~~~~~~~~~~~~i~~~~~~---g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~  232 (286)
                      ..  +...++.    ..+.+.+.+..   ...++++...-.-.   .+....+.+++++++ .+...+|+.+|++.+.+.
T Consensus        82 ~~~l~~i~hP~----i~~~~~~~~~~~~~~~~vv~e~pll~E~---~~~~~~D~ii~V~a~-~e~r~~Rl~~R~g~s~e~  153 (195)
T PRK14730         82 RRWLENLIHPY----VRERFEEELAQLKSNPIVVLVIPLLFEA---KLTDLCSEIWVVDCS-PEQQLQRLIKRDGLTEEE  153 (195)
T ss_pred             HHHHHHHHhHH----HHHHHHHHHHhcCCCCEEEEEeHHhcCc---chHhCCCEEEEEECC-HHHHHHHHHHcCCCCHHH
Confidence            00  1112211    12223322222   23444444321111   122234678889987 888889999998789999


Q ss_pred             HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      +.+|++.+.+..++...+|.||.| +|+++++.+++.+++.
T Consensus       154 ~~~ri~~Q~~~~~k~~~aD~vI~N-~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        154 AEARINAQWPLEEKVKLADVVLDN-SGDLEKLYQQVDQLLK  193 (195)
T ss_pred             HHHHHHhCCCHHHHHhhCCEEEEC-CCCHHHHHHHHHHHHh
Confidence            999999887666666789998854 5899999999988764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.49  E-value=3.8e-15  Score=139.04  Aligned_cols=183  Identities=15%  Similarity=0.078  Sum_probs=107.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      |.++|+++.|+.  .|.++++.+.+ |..|||+|+||||||||+++|+|......+.+....- .+.|.+..........
T Consensus         4 i~~~~ls~~~g~~~l~~~~~l~~~~-G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~~v~~l~Q~~~~~~~~   81 (530)
T COG0488           4 ITLENLSLAYGDRPLLENVSLTLNP-GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-LRVGYLSQEPPLDPEK   81 (530)
T ss_pred             EEEeeeEEeeCCceeecCCcceeCC-CCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-ceEEEeCCCCCcCCCc
Confidence            567899999976  78999999998 9999999999999999999999988643333331100 0001110000000000


Q ss_pred             HHHHHHhhcc----------chhhh-------------heecccc--cCccHHHHHHHHh--------cCCcEEEEeCHH
Q 043263          146 EEFLQMVDKN----------ELLEY-------------ALVYGDY--KGIPKKQIREYMA--------KGYDIVLRVDIQ  192 (286)
Q Consensus       146 ~~~~~~i~~~----------~~~~~-------------~~~~~~~--~~~~~~~i~~~~~--------~g~~~v~~~~~q  192 (286)
                      ..+...+...          .-...             ...+...  |.. ...+..++.        .....+++|++.
T Consensus        82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-e~~~~~~L~gLg~~~~~~~~~~LSGG~r~  160 (530)
T COG0488          82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTL-EARAEEALLGLGFPDEDRPVSSLSGGWRR  160 (530)
T ss_pred             cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccch-HHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence            0000000000          00000             0000000  111 111222221        122456789999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |+++|++++.+|+++++      ||.++...+.+-|....+ +...|+|+-...      -..|++|+.++.|.
T Consensus       161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FL------d~V~t~I~~ld~g~  227 (530)
T COG0488         161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFL------DNVATHILELDRGK  227 (530)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHH------HHHhhheEEecCCc
Confidence            99999999988887777      777777788788887766 888888865542      14577777777664

>PLN02422 dephospho-CoA kinase

Probab=99.49  E-value=3.4e-13  Score=113.27  Aligned_cols=178  Identities=19%  Similarity=0.179  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee----eeCHHHHHHHhhccch-h
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-L  158 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-~  158 (286)
                      .+|||+|++||||||++++|.. ++...++.....+.. ..|.        .+|.++.    .+++..++..+..+.- .
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999985 332222222211110 1110        2333331    2445555555422211 1


Q ss_pred             h--hheecccccCccHHHHHHHHhcC-CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHH
Q 043263          159 E--YALVYGDYKGIPKKQIREYMAKG-YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLV  235 (286)
Q Consensus       159 ~--~~~~~~~~~~~~~~~i~~~~~~g-~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~  235 (286)
                      .  +...++..+......+.+....+ ..++++..+  +..+ .+....+.+|+++++ .+...+|+.+|++.+.+.+..
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipL--L~E~-~~~~~~D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~  156 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPL--LFET-KMDKWTKPVVVVWVD-PETQLERLMARDGLSEEQARN  156 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehh--hhhc-chhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence            1  11222222111111111111122 345555543  1111 122234778889986 888889999998889999999


Q ss_pred             HHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          236 RIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       236 rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      |++.+.+..++...||.||.|+ |+++++..++.++++...
T Consensus       157 Ri~~Q~~~eek~~~AD~VI~N~-gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        157 RINAQMPLDWKRSKADIVIDNS-GSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             HHHHcCChhHHHhhCCEEEECC-CCHHHHHHHHHHHHHHHh
Confidence            9999887777778899888655 899999999999988753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.48  E-value=3.3e-15  Score=116.29  Aligned_cols=116  Identities=22%  Similarity=0.309  Sum_probs=68.1

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh---hcc
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV---DKN  155 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i---~~~  155 (286)
                      |+++++.+++ |++++|+|+||||||||+++|+|.+.            |..|.  ++|.++...+...++..+   .+.
T Consensus         1 L~~v~~~i~~-g~~~~i~G~nGsGKStLl~~l~g~~~------------~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~   67 (137)
T PF00005_consen    1 LKNVSLEIKP-GEIVAIVGPNGSGKSTLLKALAGLLP------------PDSGSILINGKDISDIDIEELRRRIGYVPQD   67 (137)
T ss_dssp             EEEEEEEEET-TSEEEEEESTTSSHHHHHHHHTTSSH------------ESEEEEEETTEEGTTSHHHHHHHTEEEEESS
T ss_pred             CCceEEEEcC-CCEEEEEccCCCccccceeeeccccc------------ccccccccccccccccccccccccccccccc
Confidence            3455666676 99999999999999999999999986            44444  566665443333333332   111


Q ss_pred             -chhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecC
Q 043263          156 -ELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE  213 (286)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~  213 (286)
                       .+.....+..+   ...+.+.+.             +......+.+|++|++.+|++++.+|++ +++|.|
T Consensus        68 ~~~~~~~tv~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l-lllDEP  135 (137)
T PF00005_consen   68 PQLFPGLTVREN---ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL-LLLDEP  135 (137)
T ss_dssp             HCHHTTSBHHHH---HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE-EEEEST
T ss_pred             cccccccccccc---cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE-EEEeCC
Confidence             11111111111   111112222             1111145667899999999999955554 555555

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.47  E-value=1.6e-14  Score=138.95  Aligned_cols=164  Identities=18%  Similarity=0.232  Sum_probs=98.0

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHHh----h
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQMV----D  153 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~i----~  153 (286)
                      +|+++++.+.+ |++++|+||||||||||+++|+|......         ...|+  ++|.++.   ...++..+    +
T Consensus        40 iL~~vs~~i~~-Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~---------~~~G~i~~~g~~~~---~~~~~~~i~yv~Q  106 (617)
T TIGR00955        40 LLKNVSGVAKP-GELLAVMGSSGAGKTTLMNALAFRSPKGV---------KGSGSVLLNGMPID---AKEMRAISAYVQQ  106 (617)
T ss_pred             cccCCEEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCCC---------cceeEEEECCEECC---HHHHhhhceeecc
Confidence            57888888887 99999999999999999999999864110         01333  5555432   12222211    1


Q ss_pred             cc------chhhhheeccccc---CccHH----HHHHHHh-----c------C----CcEEEEeCHHHHHHHHHHhCCCc
Q 043263          154 KN------ELLEYALVYGDYK---GIPKK----QIREYMA-----K------G----YDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       154 ~~------~~~~~~~~~~~~~---~~~~~----~i~~~~~-----~------g----~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      ++      ...++..+.....   ....+    .+.+.++     .      |    ...+.+|++||+.+|++++.+|+
T Consensus       107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~  186 (617)
T TIGR00955       107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP  186 (617)
T ss_pred             ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence            11      1122221111111   11111    1222211     1      1    12477899999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++      ||+.+...+.+.|++.  .+.+...+.|+.+...     ...||+++++++|++
T Consensus       187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i-----~~~~D~i~ll~~G~~  245 (617)
T TIGR00955       187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSEL-----FELFDKIILMAEGRV  245 (617)
T ss_pred             EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHH-----HHHhceEEEeeCCeE
Confidence            8776      6666666666666543  2345566678764211     468999999998864

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.47  E-value=3e-14  Score=133.09  Aligned_cols=171  Identities=15%  Similarity=0.092  Sum_probs=112.9

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-cCCcc-
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-VNGKD-  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-~~g~~-  139 (286)
                      ...++++|+++.|+.   .+.++++.+.+ |..|||+||||+|||||+++|.+...            |.+|. ..|.. 
T Consensus       319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~-g~riaiiG~NG~GKSTLlk~l~g~~~------------~~~G~v~~g~~v  385 (530)
T COG0488         319 KLVLEFENVSKGYDGGRLLLKDLSFRIDR-GDRIAIVGPNGAGKSTLLKLLAGELG------------PLSGTVKVGETV  385 (530)
T ss_pred             CeeEEEeccccccCCCceeecCceEEecC-CCEEEEECCCCCCHHHHHHHHhhhcc------------cCCceEEeCCce
Confidence            345899999999954   68899999998 99999999999999999999998876            44554 12332 


Q ss_pred             -eeeeCHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263          140 -YFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFV  208 (286)
Q Consensus       140 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~I  208 (286)
                       +.+.++..- ........+++..-...  ......++..          ..+....++||++-|+.+|+.++..|.++|
T Consensus       386 ~igyf~Q~~~-~l~~~~t~~d~l~~~~~--~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi  462 (530)
T COG0488         386 KIGYFDQHRD-ELDPDKTVLEELSEGFP--DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL  462 (530)
T ss_pred             EEEEEEehhh-hcCccCcHHHHHHhhCc--cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence             222222210 10011122222111100  0001122222          122334688999999999999998888888


Q ss_pred             E------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          209 F------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       209 l------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      |      ||.++.+.+.+.|....+ +...|+|+-...      -..|+++++..+
T Consensus       463 LDEPTNhLDi~s~~aLe~aL~~f~G-tvl~VSHDr~Fl------~~va~~i~~~~~  511 (530)
T COG0488         463 LDEPTNHLDIESLEALEEALLDFEG-TVLLVSHDRYFL------DRVATRIWLVED  511 (530)
T ss_pred             EcCCCccCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHH------HhhcceEEEEcC
Confidence            8      888888888888888776 888888876653      256787777764

>PTZ00243 ABC transporter; Provisional

Probab=99.45  E-value=1.4e-14  Score=151.20  Aligned_cols=159  Identities=16%  Similarity=0.258  Sum_probs=98.8

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-CcceeeeCHHHHHHHhhccchh
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYFFVSKEEFLQMVDKNELL  158 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~~~~~~~~~~~i~~~~~~  158 (286)
                      .|+++++.+++ |++++|+||||||||||+++|+|+++            |..|++. ...+.++.++..   +..+...
T Consensus       675 iL~~isl~i~~-G~~~~IiG~nGsGKSTLL~~i~G~~~------------~~~G~i~~~~~i~yv~Q~~~---l~~~Tv~  738 (1560)
T PTZ00243        675 LLRDVSVSVPR-GKLTVVLGATGSGKSTLLQSLLSQFE------------ISEGRVWAERSIAYVPQQAW---IMNATVR  738 (1560)
T ss_pred             eEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCeEEEEeCCCc---cCCCcHH
Confidence            68899999998 99999999999999999999999987            4444411 111222221110   0111222


Q ss_pred             hhheecccc----cC--cc----HHHH-------HHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263          159 EYALVYGDY----KG--IP----KKQI-------REYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE  215 (286)
Q Consensus       159 ~~~~~~~~~----~~--~~----~~~i-------~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~  215 (286)
                      ++..+....    +.  ..    .+.+       ...+.+....+++|++||+++||+++.+|+++||      ||+.+.
T Consensus       739 enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~  818 (1560)
T PTZ00243        739 GNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVG  818 (1560)
T ss_pred             HHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence            222111100    00  00    0001       1112333455778999999999999999988888      666555


Q ss_pred             HHHHHHHH--HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          216 MALVERLV--ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       216 ~~l~~rl~--~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ..+.+.+.  ...+.|...++|+++.       ...||+|+++++|++
T Consensus       819 ~~i~~~~~~~~~~~~TvIlvTH~~~~-------~~~ad~ii~l~~G~i  859 (1560)
T PTZ00243        819 ERVVEECFLGALAGKTRVLATHQVHV-------VPRADYVVALGDGRV  859 (1560)
T ss_pred             HHHHHHHHHHhhCCCEEEEEeCCHHH-------HHhCCEEEEEECCEE
Confidence            55555432  2234477788998877       357999999988864

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.45  E-value=1.4e-12  Score=104.57  Aligned_cols=181  Identities=19%  Similarity=0.254  Sum_probs=111.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhcc-ch
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKN-EL  157 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~-~~  157 (286)
                      +.+|||+|++||||||+++.+.++ +....+.....|. ...|.        .+|.++-    .++++.++..+.++ ..
T Consensus         1 M~iVGLTGgiatGKStVs~~f~~~-G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~   79 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVFKAL-GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK   79 (225)
T ss_pred             CeEEEeecccccChHHHHHHHHHc-CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence            358999999999999999999854 2222222222221 11121        3444431    24566666655222 11


Q ss_pred             --hhhheecccccCccHHHHHHHHhcCCcEEE-EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHH
Q 043263          158 --LEYALVYGDYKGIPKKQIREYMAKGYDIVL-RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELL  234 (286)
Q Consensus       158 --~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~-~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~  234 (286)
                        +-+.+.++.++..-.+++...+-.|+.+++ |...  +..+ .+.......|.+.++ ++...+|+.+|++.+.+...
T Consensus        80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--LFE~-~~~~~~~~tvvV~cd-~~~Ql~Rl~~Rd~lse~dAe  155 (225)
T KOG3220|consen   80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--LFEA-KLLKICHKTVVVTCD-EELQLERLVERDELSEEDAE  155 (225)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--HHHH-hHHhheeeEEEEEEC-cHHHHHHHHHhccccHHHHH
Confidence              223334433332233445555666765544 4443  3333 222222334445544 66777999999988999999


Q ss_pred             HHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          235 VRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       235 ~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      +|+..|++-.++...+|.|+ +++|.++++.+++..++...+..
T Consensus       156 ~Rl~sQmp~~~k~~~a~~Vi-~Nng~~~~l~~qv~~v~~~~~~s  198 (225)
T KOG3220|consen  156 NRLQSQMPLEKKCELADVVI-DNNGSLEDLYEQVEKVLALLQKS  198 (225)
T ss_pred             HHHHhcCCHHHHHHhhheee-cCCCChHHHHHHHHHHHHHhcch
Confidence            99999999888888999888 55699999999999988776544

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.44  E-value=5.7e-13  Score=110.39  Aligned_cols=179  Identities=21%  Similarity=0.229  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhcc-chh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKN-ELL  158 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~-~~~  158 (286)
                      .+|||+|++||||||+++.|+.+ +...++.....+. ...|.        .+|..+.    .+++..++..+..+ ...
T Consensus         2 ~~igitG~igsGKst~~~~l~~~-g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSSE-GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            57999999999999999999873 3222222211110 01111        2333322    13444444443211 111


Q ss_pred             h--hheecccccCccHHHHHHHHhcCC-cEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHH
Q 043263          159 E--YALVYGDYKGIPKKQIREYMAKGY-DIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLV  235 (286)
Q Consensus       159 ~--~~~~~~~~~~~~~~~i~~~~~~g~-~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~  235 (286)
                      .  +...++..+....+.+......+. .++++...  +... .+....+.+|+++++ .+...+|+.+|.+.+.+.+..
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~pl--L~e~-g~~~~~D~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~  156 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPL--LVEK-GLDRKMDLVVVVDVD-VEERVRRLVEKRGLDEDDARR  156 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeec--eeEc-CccccCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence            1  112222211111112222223332 33333322  1100 111234788899986 788889999887778999999


Q ss_pred             HHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          236 RIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       236 rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      |++.+++..++...||.||. ++|+++++.+++..+++....
T Consensus       157 ri~~Q~~~~~k~~~ad~vI~-N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        157 RIAAQIPDDVRLKAADIVVD-NNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             HHHhcCCHHHHHHhCCEEEE-CcCCHHHHHHHHHHHHHHHHh
Confidence            99999887776788998875 558999999999999877654

>TIGR00152 dephospho-CoA kinase

Probab=99.44  E-value=5e-13  Score=109.86  Aligned_cols=171  Identities=22%  Similarity=0.249  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhcc-chhh
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKN-ELLE  159 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~-~~~~  159 (286)
                      +|+|+|++||||||+++.|....+...++.....+. ...|.        .+|.++.    .+++..++..+..+ ....
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999987642222222211110 00110        1222221    13344444433111 1111


Q ss_pred             --hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263          160 --YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRI  237 (286)
Q Consensus       160 --~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl  237 (286)
                        +...++..+....+.+.+....+..++++........+..+   .+.+++++++ .+.+.+|+.+|++.+.+.+..|+
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~---~D~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~  156 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL---CDRVIVVDVS-PQLQLERLMQRDNLTEEEVQKRL  156 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh---CCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence              11122111111112222222223344544432111112333   3778889986 88888999999888999999999


Q ss_pred             HHHHHHhhccCCCcEEEECCCCCHHHHHHHHH
Q 043263          238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE  269 (286)
Q Consensus       238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~  269 (286)
                      +.+.+..+....||.||.|+ |+++++..++.
T Consensus       157 ~~q~~~~~~~~~ad~vI~N~-~~~e~l~~~~~  187 (188)
T TIGR00152       157 ASQMDIEERLARADDVIDNS-ATLADLVKQLE  187 (188)
T ss_pred             HhcCCHHHHHHhCCEEEECC-CCHHHHHHHHh
Confidence            99887766678899999655 89999988875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.44  E-value=1.1e-13  Score=106.33  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCC--cCCcceeee
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      .++||+...++  .|.++++++.+ |+|+.|+|||||||||++..+.|.+. .|.+          .|+  ++++++..+
T Consensus         4 ~l~nvsl~l~g~cLLa~~n~Tia~-GeivtlMGPSGcGKSTLls~~~G~La~~F~~----------~G~~~l~~~~l~~l   72 (213)
T COG4136           4 CLKNVSLRLPGSCLLANVNFTIAK-GEIVTLMGPSGCGKSTLLSWMIGALAGQFSC----------TGELWLNEQRLDML   72 (213)
T ss_pred             eeeeeeecCCCceEEEeeeEEecC-CcEEEEECCCCccHHHHHHHHHhhcccCcce----------eeEEEECCeecccc
Confidence            45677777776  57889999998 99999999999999999999999875 1211          233  555555433


Q ss_pred             CHH--HHHHHhhccchhhhheeccccc--------Cc-cHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCC
Q 043263          144 SKE--EFLQMVDKNELLEYALVYGDYK--------GI-PKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGD  203 (286)
Q Consensus       144 ~~~--~~~~~i~~~~~~~~~~~~~~~~--------~~-~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~  203 (286)
                      +..  +..-++++.-++.+..+.+|+.        +. .+.....+         ......++++|++.|+++.|+++ .
T Consensus        73 Pa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll-a  151 (213)
T COG4136          73 PAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALL-A  151 (213)
T ss_pred             chhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHH-h
Confidence            322  2222334444444444444421        11 11112222         33345678899999999999999 5


Q ss_pred             CcEEEEEecCCHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLV  223 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~  223 (286)
                      .+..++||.| ...+-..|+
T Consensus       152 ~Pk~lLLDEP-FS~LD~ALR  170 (213)
T COG4136         152 QPKALLLDEP-FSRLDVALR  170 (213)
T ss_pred             CcceeeeCCc-hhHHHHHHH
Confidence            5556677776 555544443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.43  E-value=1e-14  Score=150.84  Aligned_cols=175  Identities=15%  Similarity=0.187  Sum_probs=106.8

Q ss_pred             HHhHhHHHHhc----c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLG----H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~----~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+    .  +|+++++.+.+ |++++|+||||||||||+++|+|+...         ..+.+|+  ++|.+
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~-Ge~~aI~G~sGaGKSTLL~~Lag~~~~---------g~~~~G~I~i~G~~  829 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKP-GTLTALMGASGAGKTTLLNVLAERVTT---------GVITGGDRLVNGRP  829 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCC---------CCcceeEEEECCEE
Confidence            56788888884    1  79999999998 999999999999999999999998641         0123454  56655


Q ss_pred             eeeeCHHHHHHH---hhc-cch------hhhheeccccc---CccH----HHHHHHHh-----cCCc--------EEEEe
Q 043263          140 YFFVSKEEFLQM---VDK-NEL------LEYALVYGDYK---GIPK----KQIREYMA-----KGYD--------IVLRV  189 (286)
Q Consensus       140 ~~~~~~~~~~~~---i~~-~~~------~~~~~~~~~~~---~~~~----~~i~~~~~-----~g~~--------~v~~~  189 (286)
                      +.   . .++..   +.| +.+      .++..+....+   ....    +.+++.++     ...+        .+.+|
T Consensus       830 ~~---~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgG  905 (1394)
T TIGR00956       830 LD---S-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVE  905 (1394)
T ss_pred             CC---h-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHH
Confidence            42   1 12211   111 111      22222111111   1111    11222221     1111        36678


Q ss_pred             CHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC-
Q 043263          190 DIQGARTLRRILGDSAVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG-  259 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G-  259 (286)
                      ++||+.+|++++.+|+.+++||+|+       ...+.+.|++.  .+.+...+.|+++...     ...+|+|+++++| 
T Consensus       906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~-----~~~~D~vl~L~~GG  980 (1394)
T TIGR00956       906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAIL-----FEEFDRLLLLQKGG  980 (1394)
T ss_pred             HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH-----HHhcCEEEEEcCCC
Confidence            9999999999998886555555544       55666655543  2346677789877521     2468999999876 


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       981 ~i  982 (1394)
T TIGR00956       981 QT  982 (1394)
T ss_pred             EE
Confidence            54

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.43  E-value=1.2e-12  Score=107.86  Aligned_cols=174  Identities=20%  Similarity=0.230  Sum_probs=105.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCcceee----eCHHHHHHHhhccch-
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYFF----VSKEEFLQMVDKNEL-  157 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~~----~~~~~~~~~i~~~~~-  157 (286)
                      +.+|||||.+||||||+++++.. ++...++.....|.. ..|.        .+|.++..    +++..++..+-.+.. 
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57899999999999999999998 433233322222210 1110        34544432    344444444322211 


Q ss_pred             hh--hheecccccCccHHHH---HHHHhcCCcEEEEeCHHHHHHHHHH-hCC-CcEEEEEecCCHHHHHHHHHHhcCCCH
Q 043263          158 LE--YALVYGDYKGIPKKQI---REYMAKGYDIVLRVDIQGARTLRRI-LGD-SAVFVFLAAESEMALVERLVERKTENR  230 (286)
Q Consensus       158 ~~--~~~~~~~~~~~~~~~i---~~~~~~g~~~v~~~~~q~v~iaral-~~~-~~~~Illd~~~~~~l~~rl~~r~~~t~  230 (286)
                      ..  +...++    ...+.+   .+....+ .++.+.+     ++... ... .+.+|.++++ .+...+|+++|++.+.
T Consensus        81 ~~~Le~i~hP----li~~~~~~~~~~~~~~-~~~~eip-----lL~e~~~~~~~d~Vi~V~a~-~e~r~eRl~~R~~~~~  149 (201)
T COG0237          81 RLKLEKILHP----LIRAEIKVVIDGARSP-YVVLEIP-----LLFEAGGEKYFDKVIVVYAP-PEIRLERLMKRDGLDE  149 (201)
T ss_pred             HHHHHHhhhH----HHHHHHHHHHHHhhCC-ceEEEch-----HHHhccccccCCEEEEEECC-HHHHHHHHHhcCCCCH
Confidence            00  011111    111211   1222222 3344433     33222 212 3567778876 8888899999998899


Q ss_pred             HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      +.+..++..+++..++...+|.|+ +++|.++.+.+++.+.++.....
T Consensus       150 e~~~~~~~~Q~~~~ek~~~ad~vi-~n~~~i~~l~~~i~~~~~~~~~~  196 (201)
T COG0237         150 EDAEARLASQRDLEEKLALADVVI-DNDGSIENLLEQIEKLLKELLGL  196 (201)
T ss_pred             HHHHHHHHhcCCHHHHHhhcCChh-hcCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999998888788999888 55589999999999998887654

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=6.7e-13  Score=105.63  Aligned_cols=130  Identities=21%  Similarity=0.246  Sum_probs=83.4

Q ss_pred             HhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           69 LLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        69 ~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      +.+|++..-+.  .|.++++.+.+ |+++.|+||||||||||+++|+|+..            |.+|+  +.|..+... 
T Consensus         4 ~a~~L~~~R~e~~lf~~L~f~l~~-Ge~~~i~G~NG~GKTtLLRilaGLl~------------p~~G~v~~~~~~i~~~-   69 (209)
T COG4133           4 EAENLSCERGERTLFSDLSFTLNA-GEALQITGPNGAGKTTLLRILAGLLR------------PDAGEVYWQGEPIQNV-   69 (209)
T ss_pred             hhhhhhhccCcceeecceeEEEcC-CCEEEEECCCCCcHHHHHHHHHcccC------------CCCCeEEecCCCCccc-
Confidence            44566666555  67888888888 99999999999999999999999987            77777  455554332 


Q ss_pred             HHHHHHHh----h------ccchhhhheecccccC-ccHHHHHHHHhc-C--------CcEEEEeCHHHHHHHHHHhCCC
Q 043263          145 KEEFLQMV----D------KNELLEYALVYGDYKG-IPKKQIREYMAK-G--------YDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       145 ~~~~~~~i----~------~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-g--------~~~v~~~~~q~v~iaral~~~~  204 (286)
                      ++.+....    .      .-...||..++..+++ .....+.+++.. |        ...++-|+..|+++||-++..+
T Consensus        70 ~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~  149 (209)
T COG4133          70 RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA  149 (209)
T ss_pred             hhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence            22222211    1      1233566655555554 344555555432 1        1123447889999999888555


Q ss_pred             cEEEEEecC
Q 043263          205 AVFVFLAAE  213 (286)
Q Consensus       205 ~~~Illd~~  213 (286)
                      ++ -+||+|
T Consensus       150 pL-WiLDEP  157 (209)
T COG4133         150 PL-WILDEP  157 (209)
T ss_pred             Cc-eeecCc
Confidence            54 445555

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.39  E-value=5.6e-14  Score=118.80  Aligned_cols=72  Identities=18%  Similarity=0.086  Sum_probs=49.5

Q ss_pred             CcEEEEeCHHHHHHHHHHhCCCc-EEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          183 YDIVLRVDIQGARTLRRILGDSA-VFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~~-~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      ...+++|++|++.+|++++.+|+ .++++|+|+       ...+.+.+.+.  .+.+...++|+++.       ...||+
T Consensus       135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-------~~~~d~  207 (226)
T cd03270         135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-------IRAADH  207 (226)
T ss_pred             cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-------HHhCCE
Confidence            34566789999999999997774 555555554       44554544432  23467778898876       357999


Q ss_pred             EEEC------CCCCH
Q 043263          253 VVVN------AEGKL  261 (286)
Q Consensus       253 viv~------~~G~i  261 (286)
                      |+++      ++|++
T Consensus       208 i~~l~~~~~~~~G~i  222 (226)
T cd03270         208 VIDIGPGAGVHGGEI  222 (226)
T ss_pred             EEEeCCCccccCCEE
Confidence            9999      66655

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=3.9e-13  Score=105.27  Aligned_cols=144  Identities=18%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             HHhHhHHHHhc-----c----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC--
Q 043263           68 ELLRSLEASLG-----H----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN--  136 (286)
Q Consensus        68 i~~~~v~~~~~-----~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~--  136 (286)
                      +.++||+++|-     +    .+.++++.+.. |++++|-|||||||||++++|-+.|.            |++|.+.  
T Consensus         5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~a-GECvvL~G~SG~GKStllr~LYaNY~------------~d~G~I~v~   71 (235)
T COG4778           5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNA-GECVVLHGPSGSGKSTLLRSLYANYL------------PDEGQILVR   71 (235)
T ss_pred             eeeecchhheEeeecCCEEeeeeeceeEEecC-ccEEEeeCCCCCcHHHHHHHHHhccC------------CCCceEEEE
Confidence            56678888873     2    58899999998 99999999999999999999999886            6666521  


Q ss_pred             --Cc--ceeeeCHHHHHHH--------------hhccchhhhheecc-cccCccHHHHHHH--------------HhcCC
Q 043263          137 --GK--DYFFVSKEEFLQM--------------VDKNELLEYALVYG-DYKGIPKKQIREY--------------MAKGY  183 (286)
Q Consensus       137 --g~--~~~~~~~~~~~~~--------------i~~~~~~~~~~~~~-~~~~~~~~~i~~~--------------~~~g~  183 (286)
                        |.  |+....+.+.-..              ++.-.-++- ...+ -..+...+.....              ..-..
T Consensus        72 H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdV-vaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP  150 (235)
T COG4778          72 HEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDV-VAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP  150 (235)
T ss_pred             eCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHH-HHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC
Confidence              11  1111111111111              111000000 0000 0012222221111              12234


Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER  225 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r  225 (286)
                      .++++|+.||+.|||.++.+.+++++      ||+.+...+.+-|.+.
T Consensus       151 aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence            67889999999999999988888877      7777777777776643

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.36  E-value=4.1e-13  Score=109.01  Aligned_cols=161  Identities=22%  Similarity=0.291  Sum_probs=88.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccc-hh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNE-LL  158 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~-~~  158 (286)
                      .+|||+|+.||||||++++|.. ++...++.....+. ...|.        .+|.++.    .+++..++..+-.+. ..
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            4799999999999999999998 33222222211111 11121        2344332    245566665542221 11


Q ss_pred             h--hheecccccCccHHHHHHHHh---cCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHH
Q 043263          159 E--YALVYGDYKGIPKKQIREYMA---KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREEL  233 (286)
Q Consensus       159 ~--~~~~~~~~~~~~~~~i~~~~~---~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i  233 (286)
                      .  +...++.    ..+.+.+.+.   ....++++..+-.  -. .+....+.+++++++ ++...+|+.+|.+.+.+.+
T Consensus        80 ~~L~~iihP~----I~~~~~~~~~~~~~~~~~v~e~pLL~--E~-~~~~~~D~vi~V~a~-~e~ri~Rl~~R~~~~~~~~  151 (180)
T PF01121_consen   80 KKLENIIHPL----IREEIEKFIKRNKSEKVVVVEIPLLF--ES-GLEKLCDEVIVVYAP-EEIRIKRLMERDGLSEEEA  151 (180)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHCHSTSEEEEE-TTTT--TT-TGGGGSSEEEEEE---HHHHHHHHHHHHTSTHHHH
T ss_pred             HHHHHHHhHH----HHHHHHHHHHhccCCCEEEEEcchhh--hh-hHhhhhceEEEEECC-HHHHHHHHHhhCCCcHHHH
Confidence            1  1112211    1223333222   1234555554311  11 122234777888886 8888899999988899999


Q ss_pred             HHHHHHHHHHhhccCCCcEEEECCCCCHHH
Q 043263          234 LVRIATAREEVQHVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       234 ~~rl~~~~~~~~~~~~~d~viv~~~G~i~~  263 (286)
                      ..|++.|.+..++...||.||.|+ |++++
T Consensus       152 ~~ri~~Q~~~~~k~~~ad~vI~N~-g~~~~  180 (180)
T PF01121_consen  152 EARIASQMPDEEKRKRADFVIDNN-GSLEE  180 (180)
T ss_dssp             HHHHHTS--HHHHHHH-SEEEE-S-SHHH-
T ss_pred             HHHHHhCCCHHHHHHhCCEEEECC-CCCCC
Confidence            999999999988889999999665 77754

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.35  E-value=5.2e-11  Score=98.98  Aligned_cols=174  Identities=20%  Similarity=0.222  Sum_probs=94.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc--cchhh---hheecc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK--NELLE---YALVYG  165 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~--~~~~~---~~~~~~  165 (286)
                      +|.+|+|.|+.||||||+++.|...+...+.. ..+++.|. +..        ..+.++..+..  ..+..   ...+..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~-~~~~~~p~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRD-VVFTREPG-GTP--------LGEKLRELLLDPNEEMDDKTELLLFYA   71 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCc-eeEeeCCC-CCh--------HHHHHHHHHhccccCCCHHHHHHHHHH
Confidence            38899999999999999999998865321111 11222232 111        11223333221  11111   111112


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHhcC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL---GDSAVFVFLAAESEMALVERLVERKT  227 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl~~r~~  227 (286)
                      +.+....+.+...+..|..+++|-               .......+...+   ..|+++|+|+.+ .+.+.+|+.+|+.
T Consensus        72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~-~~~~~~Rl~~R~~  150 (205)
T PRK00698         72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVP-PEVGLARIRARGE  150 (205)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence            222222333445556676666651               112222222222   368899999998 6788899998864


Q ss_pred             CCH-----HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          228 ENR-----EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       228 ~t~-----~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .+.     .....++.............+.++++.+++++++.++|.+++.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~  203 (205)
T PRK00698        151 LDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAW  203 (205)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            221     123344433222222122345677788889999999999998765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.35  E-value=1.7e-11  Score=100.42  Aligned_cols=171  Identities=20%  Similarity=0.270  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      ..+++|+|++||||||+++.|+..++.........-|..    +.+..   .....++..+..+.+.......    ...
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~l   71 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAE----VASGS---ERGKQLQAIMESGDLVPLDTVL----DLL   71 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH----HhcCC---HHHHHHHHHHHCCCCCCHHHHH----HHH
Confidence            578999999999999999999976532221111000000    00000   0011122222222211111111    111


Q ss_pred             HHHHHHHHhcCCcEEEEeCHHHHHHHH---HHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 043263          172 KKQIREYMAKGYDIVLRVDIQGARTLR---RILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATARE  242 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~~q~v~iar---al~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~  242 (286)
                      .+.+...+..+..+++++-...+..+.   ..+..|..+|+||++ .+.+.+|+..|+..      +.+.+..|+.....
T Consensus        72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~  150 (188)
T TIGR01360        72 KDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYK  150 (188)
T ss_pred             HHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence            122333345677788887543222222   223468889999997 78888999877532      55667777776543


Q ss_pred             Hhh-----ccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          243 EVQ-----HVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       243 ~~~-----~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ...     +....+.+.++.++.++++.+++.+.++.
T Consensus       151 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       151 ATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             hhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            321     11234666778888999999999988764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.35  E-value=1.4e-13  Score=142.63  Aligned_cols=179  Identities=16%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHH---Hh-h
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQ---MV-D  153 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~---~i-~  153 (286)
                      +|+++++.+.+ |++++|+||||||||||+++|+|.....        ..+.+|+  ++|.++.... ..++.   .+ +
T Consensus        76 iL~~vs~~i~~-Ge~~aIlG~nGsGKSTLLk~LaG~~~~~--------~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q  145 (1394)
T TIGR00956        76 ILKPMDGLIKP-GELTVVLGRPGSGCSTLLKTIASNTDGF--------HIGVEGVITYDGITPEEIK-KHYRGDVVYNAE  145 (1394)
T ss_pred             eeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCC--------CCCceeEEEECCEehHHHH-hhcCceeEEecc
Confidence            68889999988 9999999999999999999999975210        0133444  4554331110 00110   00 1


Q ss_pred             cc------chhhhheeccccc-------CccHHH-----HHHHHh-----cCC---------cEEEEeCHHHHHHHHHHh
Q 043263          154 KN------ELLEYALVYGDYK-------GIPKKQ-----IREYMA-----KGY---------DIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       154 ~~------~~~~~~~~~~~~~-------~~~~~~-----i~~~~~-----~g~---------~~v~~~~~q~v~iaral~  201 (286)
                      ++      ...++..+.....       +...++     .+..++     ...         ..+++|++||+.+|++++
T Consensus       146 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~  225 (1394)
T TIGR00956       146 TDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL  225 (1394)
T ss_pred             ccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence            11      1112111110000       111111     111211     111         236789999999999999


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHH-HHHHHhhccCCCcEEEECCCCCHH--HHHHHHH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIA-TAREEVQHVKNFDYVVVNAEGKLD--SAVKLVE  269 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~-~~~~~~~~~~~~d~viv~~~G~i~--~~~~~l~  269 (286)
                      .+|+++++      ||+.+...+.+.|++.   .+.+...+.|+.. ..      ...+|+|+++++|++.  ...+++.
T Consensus       226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i------~~l~D~v~~L~~G~iv~~G~~~~~~  299 (1394)
T TIGR00956       226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDA------YELFDKVIVLYEGYQIYFGPADKAK  299 (1394)
T ss_pred             hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH------HHhhceEEEEeCCeEEEECCHHHHH
Confidence            88888777      7777777777766653   2335566677653 32      3689999999988651  2234444


Q ss_pred             HHHHH
Q 043263          270 SVIDA  274 (286)
Q Consensus       270 ~~i~~  274 (286)
                      +.++.
T Consensus       300 ~yF~~  304 (1394)
T TIGR00956       300 QYFEK  304 (1394)
T ss_pred             HHHHH
Confidence            44443

>PRK01184 hypothetical protein; Provisional

Probab=99.35  E-value=8.6e-11  Score=96.15  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             CCcEEEEeC--HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHH--HhhccCCCcEE
Q 043263          182 GYDIVLRVD--IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT----ENREELLVRIATARE--EVQHVKNFDYV  253 (286)
Q Consensus       182 g~~~v~~~~--~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----~t~~~i~~rl~~~~~--~~~~~~~~d~v  253 (286)
                      +..+++++-  ...+..++..+..+..+|+++++ .+.+.+|+..|++    .+.+.+..|...+.+  ..+....||.+
T Consensus        80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~v  158 (184)
T PRK01184         80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYM  158 (184)
T ss_pred             CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEE
Confidence            456777763  33344556666445678889986 7888899988763    245677777766532  33445789998


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHh
Q 043263          254 VVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       254 iv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      |. ++|+++++..++.++++....
T Consensus       159 I~-N~~~~~~l~~~v~~~~~~~~~  181 (184)
T PRK01184        159 IV-NDSTLEEFRARVRKLLERILR  181 (184)
T ss_pred             Ee-CCCCHHHHHHHHHHHHHHHhc
Confidence            86 558999999999999876543

>PLN03140 ABC transporter G family member; Provisional

Probab=99.34  E-value=9.1e-14  Score=143.77  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHH-HHHHHhhccCCCcEEE
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIA-TAREEVQHVKNFDYVV  254 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~-~~~~~~~~~~~~d~vi  254 (286)
                      .+++|++||+.+|++++.+|+++++      ||+.+...+.+.|++.   .+.|...+.|+.. ..      ...||+|+
T Consensus       336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i------~~lfD~vi  409 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET------FDLFDDII  409 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH------HHHhheEE
Confidence            3668999999999999988888777      7777777777766653   2335555567542 22      36899999


Q ss_pred             ECCCCCHH--HHHHHHHHHHHHH
Q 043263          255 VNAEGKLD--SAVKLVESVIDAE  275 (286)
Q Consensus       255 v~~~G~i~--~~~~~l~~~i~~~  275 (286)
                      ++++|++.  ...+++...++++
T Consensus       410 lL~~G~ivy~G~~~~~~~yF~~l  432 (1470)
T PLN03140        410 LLSEGQIVYQGPRDHILEFFESC  432 (1470)
T ss_pred             EeeCceEEEeCCHHHHHHHHHHc
Confidence            99988752  2334555555443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.31  E-value=8.6e-12  Score=113.45  Aligned_cols=194  Identities=12%  Similarity=0.103  Sum_probs=116.9

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-Cccee
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~  141 (286)
                      ..+.++|++|.|..   .+.++++-+.. +..++++||||+||||+++++.+.+.            |..|.+- +....
T Consensus       388 pvi~~~nv~F~y~~~~~iy~~l~fgid~-~srvAlVGPNG~GKsTLlKl~~gdl~------------p~~G~vs~~~H~~  454 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDNPMIYKKLNFGIDL-DSRVALVGPNGAGKSTLLKLITGDLQ------------PTIGMVSRHSHNK  454 (614)
T ss_pred             CeEEEeccccCCCCcchhhhhhhcccCc-ccceeEecCCCCchhhhHHHHhhccc------------ccccccccccccc
Confidence            45788999999975   68888888887 89999999999999999999999876            5555521 11111


Q ss_pred             ee--CHHHHHHHhhccchhhhh-eecccccCccHHHHHHHHhc----------CCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263          142 FV--SKEEFLQMVDKNELLEYA-LVYGDYKGIPKKQIREYMAK----------GYDIVLRVDIQGARTLRRILGDSAVFV  208 (286)
Q Consensus       142 ~~--~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~----------g~~~v~~~~~q~v~iaral~~~~~~~I  208 (286)
                      +.  ++..-..+-.+...+++. ..+..  ....+.++..+..          -...+++|++.|+..++..+..|.++|
T Consensus       455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~--~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLl  532 (614)
T KOG0927|consen  455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD--EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLL  532 (614)
T ss_pred             chhhhhhhHhhcCcchhHHHHHHHhccc--cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEE
Confidence            10  000000000000001110 11111  1122333333221          112366899999999999997777777


Q ss_pred             E------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          209 F------LAAESEMALVERLVERKTENREELLVRIATAREEVQH-VKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       209 l------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~-~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      |      ||.++...+.+.|.+..+ +...+.|+.....+..+. ....|.-+...+|+++.-..++.+.+...
T Consensus       533 LDEPtnhLDi~tid~laeaiNe~~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~~e  605 (614)
T KOG0927|consen  533 LDEPTNHLDIETIDALAEAINEFPG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKE  605 (614)
T ss_pred             ecCCCcCCCchhHHHHHHHHhccCC-ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHhhh
Confidence            7      777777788888887765 566666654432221111 24556666667788988777777555443

>PRK04040 adenylate kinase; Provisional

Probab=99.31  E-value=7.3e-11  Score=96.78  Aligned_cols=70  Identities=24%  Similarity=0.345  Sum_probs=53.8

Q ss_pred             CCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHhh----ccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATAREEVQ----HVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~~~~----~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .|..+|++++++...+.+|+..    |+..+.+.+..++..+..+..    .....+.+|+|++|.++++++++.+++
T Consensus       110 ~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        110 NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            7889999999888777777753    555577888777776665422    224589999999999999999998876

>PRK06762 hypothetical protein; Provisional

Probab=99.30  E-value=1.6e-10  Score=92.89  Aligned_cols=152  Identities=14%  Similarity=0.151  Sum_probs=89.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc-ccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD-YKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~  170 (286)
                      +.+|+|+|++||||||+++.|+..++                    ..+..++.+.++..+....     ...+. ....
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~--------------------~~~~~i~~D~~r~~l~~~~-----~~~~~~~~~~   56 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG--------------------RGTLLVSQDVVRRDMLRVK-----DGPGNLSIDL   56 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--------------------CCeEEecHHHHHHHhcccc-----CCCCCcCHHH
Confidence            46899999999999999999998753                    1233344455444321100     00000 0011


Q ss_pred             cHHHHHHHHhcCCcEEEEeCH------HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 043263          171 PKKQIREYMAKGYDIVLRVDI------QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT---ENREELLVRIATAR  241 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~------q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~  241 (286)
                      ..+.+...+..|..+++++-.      ..+..++.....+..+|+||++ .+.+.+|..+|..   .+...+...+    
T Consensus        57 ~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~----  131 (166)
T PRK06762         57 IEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWW----  131 (166)
T ss_pred             HHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHH----
Confidence            122233445667777776532      1133333344446688999997 6678888887754   2344443333    


Q ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .+.+....++.++++++.++.+++.++.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        132 NPHDTLGVIGETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             hhcCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence            22232345788888887799999998887653

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.30  E-value=1.1e-12  Score=122.62  Aligned_cols=162  Identities=14%  Similarity=0.089  Sum_probs=101.3

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF  141 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~  141 (286)
                      +..+.++|++..-+.   .+.+.++.+.+ |+-+-|.|+||||||||+|.|+|+.+...+.+..    |     .+.+..
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~-G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~----P-----~~~~~l  459 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRP-GERLLITGESGAGKTSLLRALAGLWPWGSGRISM----P-----ADSALL  459 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCC-CCEEEEECCCCCCHHHHHHHHhccCccCCCceec----C-----CCCceE
Confidence            356888888887765   57888999998 9999999999999999999999998744333321    2     122233


Q ss_pred             eeCHHHHHHHhhccchhhhheecccccCccHHHHHHHH------------hc---CCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263          142 FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYM------------AK---GYDIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~---g~~~v~~~~~q~v~iaral~~~~~~  206 (286)
                      ++++..   .++++.+.+-..+-......+.+++.+++            ++   -..++.+|+.||++.||.+++.|..
T Consensus       460 flpQ~P---Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~  536 (604)
T COG4178         460 FLPQRP---YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW  536 (604)
T ss_pred             EecCCC---CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence            333211   12222222222121111113333333332            11   1245778999999999999988888


Q ss_pred             EEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 043263          207 FVF------LAAESEMALVERLVER-KTENREELLVRIAT  239 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~  239 (286)
                      +++      ||++++..+.+-++++ .+.+.+.|.||-..
T Consensus       537 v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl  576 (604)
T COG4178         537 VFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL  576 (604)
T ss_pred             EEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh
Confidence            887      7777776776666653 33355566665443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.28  E-value=4.2e-12  Score=113.38  Aligned_cols=169  Identities=14%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee--
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV--  143 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~--  143 (286)
                      .++..++.+.|+. .|....-.+.. |++++++||||-||||++++|+|.+.            |++|......+...  
T Consensus       342 lv~y~~~~k~~g~F~L~V~~G~i~~-gEvigilGpNgiGKTTFvk~LAG~ik------------Pdeg~~~~~~vSyKPQ  408 (591)
T COG1245         342 LVEYPDLKKTYGDFKLEVEEGEIYD-GEVIGILGPNGIGKTTFVKLLAGVIK------------PDEGSEEDLKVSYKPQ  408 (591)
T ss_pred             eeecchheeecCceEEEecCCeeec-ceEEEEECCCCcchHHHHHHHhcccc------------CCCCCCccceEeecce
Confidence            3556677888886 45555566665 99999999999999999999999886            66665212222211  


Q ss_pred             --------CHHHHHHHhhccchhhhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------
Q 043263          144 --------SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF------  209 (286)
Q Consensus       144 --------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il------  209 (286)
                              +-+++-.......+..  .++.+- -...-.+...+++....+++|++||+++|.++.+..+++++      
T Consensus       409 yI~~~~~gtV~~~l~~~~~~~~~~--s~~~~e-i~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~  485 (591)
T COG1245         409 YISPDYDGTVEDLLRSAIRSAFGS--SYFKTE-IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY  485 (591)
T ss_pred             eecCCCCCcHHHHHHHhhhhhccc--chhHHh-hcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence                    1111111111111110  000000 00111244556666677899999999999999877777776      


Q ss_pred             EecCCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          210 LAAESEM---ALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       210 ld~~~~~---~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ||.....   ..++|+.+....+..++.|++...      --.+|+++|..
T Consensus       486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~------dyvsDr~ivF~  530 (591)
T COG1245         486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI------DYVSDRLIVFE  530 (591)
T ss_pred             ccHHHHHHHHHHHHHHHhhcCceEEEEecceehh------hhhhceEEEEe
Confidence            4443111   233455544444666778877663      24699999987

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.26  E-value=3.2e-11  Score=98.33  Aligned_cols=158  Identities=25%  Similarity=0.296  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCC--------cCCccee----eeCHHHHHHHhhccch-hh
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-LE  159 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-~~  159 (286)
                      +|+|+|++||||||+++.|.. ++...++.....+.. ..|.        .+|.++.    .+++..++..+..+.- ..
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            589999999999999999988 443333322222211 1111        2344332    2445555555422211 10


Q ss_pred             --hheecccccCccHHHHHHHHhc---CCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHH
Q 043263          160 --YALVYGDYKGIPKKQIREYMAK---GYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELL  234 (286)
Q Consensus       160 --~~~~~~~~~~~~~~~i~~~~~~---g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~  234 (286)
                        +...++.    ..+.+.+.+..   ...+++++..-.-.-...+   .+.+++++++ .+...+|+.+|++.+...+.
T Consensus        80 ~l~~i~hp~----i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~---~D~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~  151 (179)
T cd02022          80 KLEAITHPL----IRKEIEEQLAEARKEKVVVLDIPLLFETGLEKL---VDRVIVVDAP-PEIQIERLMKRDGLSEEEAE  151 (179)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHccCCCEEEEEehHhhcCCcHHh---CCeEEEEECC-HHHHHHHHHHcCCCCHHHHH
Confidence              1122221    12223322222   2344455433111111222   3788889987 78888999999888999999


Q ss_pred             HHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          235 VRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       235 ~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .|+..|....++...||.||.|+ |.+
T Consensus       152 ~r~~~Q~~~~~~~~~aD~vI~N~-~~~  177 (179)
T cd02022         152 ARIASQMPLEEKRARADFVIDNS-GSL  177 (179)
T ss_pred             HHHHhcCCHHHHHHhCCEEEECc-CCC
Confidence            99999887777778999999766 544

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.26  E-value=1.4e-10  Score=96.86  Aligned_cols=86  Identities=12%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             cEEEEeCHHHH-HHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH------hhccCCCcE
Q 043263          184 DIVLRVDIQGA-RTLRRILGDSAVFVFLAAESEMALVERLVERK----TENREELLVRIATAREE------VQHVKNFDY  252 (286)
Q Consensus       184 ~~v~~~~~q~v-~iaral~~~~~~~Illd~~~~~~l~~rl~~r~----~~t~~~i~~rl~~~~~~------~~~~~~~d~  252 (286)
                      .++++|-.-.. .-++.++   +..|||+++ .+..++|...|.    +.+.+.+..++..+...      .+....||.
T Consensus       108 ~vivEg~~l~~~~~~~~~~---d~~I~v~~~-~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~  183 (209)
T PRK05480        108 VIILEGILLLEDERLRDLM---DIKIFVDTP-LDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADI  183 (209)
T ss_pred             EEEEEeehhcCchhHhhhh---ceeEEEeCC-hhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeE
Confidence            45556543211 2223344   889999998 555556655554    45777777777665432      334568898


Q ss_pred             EEECC---CCCHHHHHHHHHHHHH
Q 043263          253 VVVNA---EGKLDSAVKLVESVID  273 (286)
Q Consensus       253 viv~~---~G~i~~~~~~l~~~i~  273 (286)
                      ||.++   .+.++++.++|..+++
T Consensus       184 vI~~~~~~~~~~~~l~~~i~~~~~  207 (209)
T PRK05480        184 IIPEGGKNRVAIDILKAKIRQLLE  207 (209)
T ss_pred             EecCCCcchHHHHHHHHHHHHHhh
Confidence            88643   1267777777777654

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.26  E-value=2.8e-10  Score=92.36  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcc-eeeeCHHHHHH---Hhhccc-hhhh-heecc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKD-YFFVSKEEFLQ---MVDKNE-LLEY-ALVYG  165 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~-~~~~~~~~~~~---~i~~~~-~~~~-~~~~~  165 (286)
                      |.+|.|+|++||||||+++.|...++.....             .|.| +.......+..   .+.... +.+. ....+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~-------------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLH-------------FGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFR   68 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccc-------------cCccHHHHhcChhhcccccccccCccCCcccchHHH
Confidence            7899999999999999999999765310000             0111 11100000000   000000 0000 01222


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR  241 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~  241 (286)
                      +.|+...+.+...+..|..++++...    +....++.+...+-.+|+++++ .+.+.+|+.+|+........+    +.
T Consensus        69 ~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~~R~~~~~~~~~~----~~  143 (175)
T cd00227          69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPGQARK----QA  143 (175)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhcCCccchHHHH----HH
Confidence            34555556677788999999998532    2223445555445677779987 688889999887532222111    11


Q ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .........|.++-.+..++++.+++|.+.+
T Consensus       144 ~~~~~~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         144 RVVHAGVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             HHhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence            1111123456665444347999988887654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.25  E-value=1.8e-12  Score=134.26  Aligned_cols=177  Identities=12%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---h-h
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---V-D  153 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i-~  153 (286)
                      .|+++++.+.+ |++++|+||||||||||+++|+|....  +        +.+|+  ++|.+..   ...++..   + +
T Consensus       895 iL~~vs~~i~~-Gel~aL~G~sGaGKTTLL~~LaG~~~~--g--------~~~G~I~inG~~~~---~~~~~~~igyv~Q  960 (1470)
T PLN03140        895 LLREVTGAFRP-GVLTALMGVSGAGKTTLMDVLAGRKTG--G--------YIEGDIRISGFPKK---QETFARISGYCEQ  960 (1470)
T ss_pred             EeeCcEEEEEC-CeEEEEECCCCCCHHHHHHHHcCCCCC--C--------cccceEEECCccCC---hHHhhhheEEEcc
Confidence            68889999998 999999999999999999999997531  0        12343  4454321   1112211   1 1


Q ss_pred             cc------chhhhheeccccc---CccHH----HHHHHHh--------cCC------cEEEEeCHHHHHHHHHHhCCCcE
Q 043263          154 KN------ELLEYALVYGDYK---GIPKK----QIREYMA--------KGY------DIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       154 ~~------~~~~~~~~~~~~~---~~~~~----~i~~~~~--------~g~------~~v~~~~~q~v~iaral~~~~~~  206 (286)
                      ++      ...++..+.....   ..+.+    .+++.++        +..      ..+++|++||+.+|++++.+|++
T Consensus       961 ~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l 1040 (1470)
T PLN03140        961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040 (1470)
T ss_pred             ccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE
Confidence            11      1122221111110   11111    1222211        111      24677899999999999988888


Q ss_pred             EEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC-CCH------HHHHHHHHHH
Q 043263          207 FVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE-GKL------DSAVKLVESV  271 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~-G~i------~~~~~~l~~~  271 (286)
                      +++      ||+.+...+.+.|++.  .+.+...+.|+.+...     ...||+++++++ |++      .+-..++.+.
T Consensus      1041 L~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i-----~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~y 1115 (1470)
T PLN03140       1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI-----FEAFDELLLMKRGGQVIYSGPLGRNSHKIIEY 1115 (1470)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-----HHhCCEEEEEcCCCEEEEECCcccccccHHHH
Confidence            555      4554455666655543  2336666688776311     357899999975 553      2223456666


Q ss_pred             HHHH
Q 043263          272 IDAE  275 (286)
Q Consensus       272 i~~~  275 (286)
                      +++.
T Consensus      1116 F~~~ 1119 (1470)
T PLN03140       1116 FEAI 1119 (1470)
T ss_pred             HHhc
Confidence            6654

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.24  E-value=1.6e-12  Score=129.45  Aligned_cols=176  Identities=18%  Similarity=0.213  Sum_probs=119.5

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..+.++++++.|+.   ++.++++.+++ |++.|+.|+|||||||+.++|.|...            |+.|+  +.|.++
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~-gecfgLLG~NGAGKtT~f~mltG~~~------------~t~G~a~i~g~~i  629 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPP-GECFGLLGVNGAGKTTTFKMLTGETK------------PTSGEALIKGHDI  629 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecC-CceEEEecCCCCCchhhHHHHhCCcc------------CCcceEEEecCcc
Confidence            34667788888875   46788899998 99999999999999999999999876            77777  666666


Q ss_pred             eee-CHHHHHHHh----------hccchhhhheecccccCccHHHHHHHH-------------hcCCcEEEEeCHHHHHH
Q 043263          141 FFV-SKEEFLQMV----------DKNELLEYALVYGDYKGIPKKQIREYM-------------AKGYDIVLRVDIQGART  196 (286)
Q Consensus       141 ~~~-~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~~g~~~v~~~~~q~v~i  196 (286)
                      ... +.......+          +.-+-.|+...++.+.|+...++.+.+             ......+.+|.+.++..
T Consensus       630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~  709 (885)
T KOG0059|consen  630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSF  709 (885)
T ss_pred             ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHH
Confidence            432 121222222          222335666777777776654444331             12234566889999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |.+++++|.++++      +||.++..++.-+.   +.+. .....+|-++.+      -..|||+.++-+|++
T Consensus       710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~-aiiLTSHsMeE~------EaLCtR~aImv~G~l  776 (885)
T KOG0059|consen  710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTSHSMEEA------EALCTRTAIMVIGQL  776 (885)
T ss_pred             HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEcCCHHHH------HHHhhhhheeecCee
Confidence            9999977777776      66655666655444   3322 344446766654      267999888888864

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=5.7e-11  Score=105.82  Aligned_cols=187  Identities=19%  Similarity=0.167  Sum_probs=112.3

Q ss_pred             HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCC-c--ce
Q 043263           67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNG-K--DY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g-~--~~  140 (286)
                      .+-+.+|+|.|++   .+..+++-+-- ...|+|+||||.||||++++|.|.+.            |..|+..- .  .+
T Consensus       586 vLGlH~VtFgy~gqkpLFkkldFGiDm-dSRiaIVGPNGVGKSTlLkLL~Gkl~------------P~~GE~RKnhrL~i  652 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQKPLFKKLDFGIDM-DSRIAIVGPNGVGKSTLLKLLIGKLD------------PNDGELRKNHRLRI  652 (807)
T ss_pred             eeecccccccCCCCCchhhcccccccc-cceeEEECCCCccHHHHHHHHhcCCC------------CCcchhhccceeee
Confidence            4678999999976   57777877765 67799999999999999999999987            77776221 1  12


Q ss_pred             eeeCHHHHHHHhhccchhhhheecccccCccHHHHHHHH-----hcCCcE-----EEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          141 FFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYM-----AKGYDI-----VLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~g~~~-----v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                      .+.++..-..+-......++..   ..+.++.+..+..+     ..+..+     +++|+..|++++.-.++.|+++|+ 
T Consensus       653 G~FdQh~~E~L~~Eetp~EyLq---r~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD  729 (807)
T KOG0066|consen  653 GWFDQHANEALNGEETPVEYLQ---RKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD  729 (807)
T ss_pred             echhhhhHHhhccccCHHHHHH---HhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence            2222222112211112222211   11122333333332     222222     447899999999877888888888 


Q ss_pred             -----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC------CCHHHHHHHHHHHHHHH
Q 043263          210 -----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE------GKLDSAVKLVESVIDAE  275 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~------G~i~~~~~~l~~~i~~~  275 (286)
                           ||..+...+.+.|.+..+ ..++++|+-....     ...|...+|-+.      |+.++-..++.+.+...
T Consensus       730 EPTNNLDIESIDALaEAIney~G-gVi~VsHDeRLi~-----eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv  800 (807)
T KOG0066|consen  730 EPTNNLDIESIDALAEAINEYNG-GVIMVSHDERLIV-----ETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEV  800 (807)
T ss_pred             CCCCCcchhhHHHHHHHHHhccC-cEEEEecccceee-----ecCceEEEEccCChhhccccHHHHHHHHHHHHHHH
Confidence                 777777777777777655 5666666433210     245666555442      34555555665555443

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.22  E-value=8.6e-12  Score=114.26  Aligned_cols=175  Identities=19%  Similarity=0.181  Sum_probs=105.8

Q ss_pred             hhHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263           65 NKIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY  140 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~  140 (286)
                      ++.|++++|++.-+.    .++++++.++. |..+.|+||||||||+|++.|.|+.+...+.+..    |..|..  .++
T Consensus       431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~-g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k----~~~~~~--~~l  503 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPS-GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK----PTDGGP--KDL  503 (659)
T ss_pred             cceEEeeeeeecCCCCCceeeeeeeeEecC-CCeEEEECCCCCchhHHHHHHhcccccCCCeEEe----cccCCC--Cce
Confidence            466888888887664    46778999998 9999999999999999999999998744444332    111100  233


Q ss_pred             eeeCHH------HHHHHhhccchhhhheecccccCccHHHHHHHH-----------hcC---------CcEEEEeCHHHH
Q 043263          141 FFVSKE------EFLQMVDKNELLEYALVYGDYKGIPKKQIREYM-----------AKG---------YDIVLRVDIQGA  194 (286)
Q Consensus       141 ~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~g---------~~~v~~~~~q~v  194 (286)
                      .++++.      .+++.+   -+ ............+.+.+.+.+           ..|         .++++.|+.||+
T Consensus       504 fflPQrPYmt~GTLRdQv---IY-P~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL  579 (659)
T KOG0060|consen  504 FFLPQRPYMTLGTLRDQV---IY-PLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL  579 (659)
T ss_pred             EEecCCCCccccchhhee---ec-cCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence            333221      111111   00 000000111112222222110           111         245667899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      +.||-++..|.+.|+      ++.+.|..+-+.+++. +.|.+.|-||-+-       .+..|.++-++.
T Consensus       580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-giT~iSVgHRkSL-------~kfHd~~L~~~g  641 (659)
T KOG0060|consen  580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-GITFISVGHRKSL-------WKFHDYVLRMDG  641 (659)
T ss_pred             HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-CCeEEEeccHHHH-------HhhhhEEEEecC
Confidence            999999988888888      5555455554445444 4477888999887       366777776653

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.21  E-value=6.1e-12  Score=105.44  Aligned_cols=76  Identities=9%  Similarity=-0.109  Sum_probs=48.9

Q ss_pred             HhcCCcEEEEeCHHHHHHHHHHhCC----------CcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHH
Q 043263          179 MAKGYDIVLRVDIQGARTLRRILGD----------SAVFVF------LAAESEMALVERLVERK--TENREELLVRIATA  240 (286)
Q Consensus       179 ~~~g~~~v~~~~~q~v~iaral~~~----------~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~  240 (286)
                      +......+.+|+.|++.++++++..          |+++|+      +|+.....+.+.+.+..  +.+...++|+++..
T Consensus       117 l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~  196 (213)
T cd03279         117 LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELK  196 (213)
T ss_pred             hcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHH
Confidence            3444456778899999999999742          334444      44443445545454331  33667778877754


Q ss_pred             HHHhhccCCCcEEEECCCCC
Q 043263          241 REEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       241 ~~~~~~~~~~d~viv~~~G~  260 (286)
                            ...+|+++++++|.
T Consensus       197 ------~~~~~~i~~~~~~~  210 (213)
T cd03279         197 ------ERIPQRLEVIKTPG  210 (213)
T ss_pred             ------HhhCcEEEEEecCC
Confidence                  36789999888774

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.20  E-value=7.7e-12  Score=107.38  Aligned_cols=72  Identities=13%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             CcEEEEeCHHHHHHHHHHhCC---CcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          183 YDIVLRVDIQGARTLRRILGD---SAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~---~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      ...+++|+.||+.+|+++..+   |.++|+      ||+.+...+.+.+.+.  .+.+...++|.++.       ...||
T Consensus       167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~-------i~~aD  239 (261)
T cd03271         167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV-------IKCAD  239 (261)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-------HHhCC
Confidence            345667899999999999975   345444      4444444555544432  23477778898876       35699


Q ss_pred             EEEEC------CCCCH
Q 043263          252 YVVVN------AEGKL  261 (286)
Q Consensus       252 ~viv~------~~G~i  261 (286)
                      +++++      ++|++
T Consensus       240 ~ii~Lgp~~g~~~G~i  255 (261)
T cd03271         240 WIIDLGPEGGDGGGQV  255 (261)
T ss_pred             EEEEecCCcCCCCCEE
Confidence            99999      56654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.18  E-value=1e-10  Score=106.55  Aligned_cols=172  Identities=20%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccch--
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNEL--  157 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~--  157 (286)
                      .+|||+|++||||||++++|..+ +...++.....+. ...|.        .+|.++.    .+++..++..+..+.-  
T Consensus         2 ~~IgltG~igsGKStv~~~L~~~-G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAEL-GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            47999999999999999999874 3222221111111 01111        2333321    2455555555422111  


Q ss_pred             -hhhheecccccCccHHHHHHHHh--cCCcEEE-EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHH
Q 043263          158 -LEYALVYGDYKGIPKKQIREYMA--KGYDIVL-RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREEL  233 (286)
Q Consensus       158 -~~~~~~~~~~~~~~~~~i~~~~~--~g~~~v~-~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i  233 (286)
                       ..+...++..    .+.+.+.+.  .+..+++ +...  +.-. .+....+.+|+|+++ .+...+|+.++.+.+...+
T Consensus        81 ~~le~i~hP~I----~~~i~~~i~~~~~~~vvv~eipL--L~E~-~~~~~~D~iI~V~ap-~e~ri~Rl~~rRg~s~~~a  152 (395)
T PRK03333         81 AVLNGIVHPLV----GARRAELIAAAPEDAVVVEDIPL--LVES-GMAPLFHLVVVVDAD-VEVRVRRLVEQRGMAEADA  152 (395)
T ss_pred             HHHHHhhhHHH----HHHHHHHHHhcCCCCEEEEEeee--eecC-CchhhCCEEEEEECC-HHHHHHHHHhcCCCCHHHH
Confidence             0111122221    122223222  2223333 3221  1000 111123788999997 7888899988666688888


Q ss_pred             HHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          234 LVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       234 ~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ..++..+....++...||.+|. ++|+++++..++.++++.
T Consensus       153 ~~ri~~Q~~~e~k~~~AD~vId-N~~s~e~l~~~v~~~l~~  192 (395)
T PRK03333        153 RARIAAQASDEQRRAVADVWLD-NSGTPDELVEAVRALWAD  192 (395)
T ss_pred             HHHHHhcCChHHHHHhCCEEEE-CCCCHHHHHHHHHHHHHH
Confidence            8888887766666788998876 568999999999888775

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.18  E-value=6.6e-12  Score=120.22  Aligned_cols=162  Identities=19%  Similarity=0.271  Sum_probs=93.4

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc---ceeeeeecccCCCCCCcCCcceeeeCHHHHHHH---h-
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS---LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM---V-  152 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~---~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~---i-  152 (286)
                      .|++++....+ |++.||+||||||||||+++|+|....   ..+.+.          ++|+..   +...++..   + 
T Consensus        45 iL~~vsg~~~~-Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il----------vNG~~~---~~~~~~~~s~yV~  110 (613)
T KOG0061|consen   45 ILKGVSGTAKP-GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL----------LNGRPR---DSRSFRKISGYVQ  110 (613)
T ss_pred             eeeCcEEEEec-CeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE----------ECCccC---chhhhhheeEEEc
Confidence            68888888888 999999999999999999999998641   222222          555321   22222221   1 


Q ss_pred             hccch------hhhheeccccc--C-ccHH----HHHHHH-----hcCCcE---------EEEeCHHHHHHHHHHhCCCc
Q 043263          153 DKNEL------LEYALVYGDYK--G-IPKK----QIREYM-----AKGYDI---------VLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       153 ~~~~~------~~~~~~~~~~~--~-~~~~----~i~~~~-----~~g~~~---------v~~~~~q~v~iaral~~~~~  205 (286)
                      +++.+      .|...+.+..+  . .+.+    .+++.+     .+-.++         +.+|+++|+.+|..++.+|.
T Consensus       111 QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~  190 (613)
T KOG0061|consen  111 QDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPS  190 (613)
T ss_pred             ccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCC
Confidence            22222      23222222221  1 1222    222221     122233         44589999999999997777


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++++      ||..+...+++-|++.  .+.++....|+.+...     ...+|+++++..|+
T Consensus       191 iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~l-----f~lFD~l~lLs~G~  248 (613)
T KOG0061|consen  191 ILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSEL-----FELFDKLLLLSEGE  248 (613)
T ss_pred             EEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHH-----HHHHhHhhhhcCCc
Confidence            7666      5555455555555442  2435444456555432     45678888777664

>PRK14530 adenylate kinase; Provisional

Probab=99.16  E-value=1.4e-09  Score=91.27  Aligned_cols=169  Identities=21%  Similarity=0.247  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH--HHHHHHhhccchhhhheecccccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK--EEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +..|+|+|++||||||+++.|++.++..++++...-+..     .+.++.....  ......+..+.+...        .
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~d--------~   69 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRAN-----KQMDISDMDTEYDTPGEYMDAGELVPD--------A   69 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHh-----ccCCcccccchHHHHHHHHHcCCCCCH--------H
Confidence            567999999999999999999988763333322111100     0111111100  001111111111110        0


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHH--hCCCcEEEEEecCCHHHHHHHHHHhc---------------------
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRI--LGDSAVFVFLAAESEMALVERLVERK---------------------  226 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral--~~~~~~~Illd~~~~~~l~~rl~~r~---------------------  226 (286)
                      .....+...+......+++|-......+..+  ...+..+|+||.+ .+.+.+|+..|.                     
T Consensus        70 ~~~~~l~~~l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~-~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~  148 (215)
T PRK14530         70 VVNEIVEEALSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVS-EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGV  148 (215)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHhCCCcCcccCCccccCCCCCccccc
Confidence            1122334444545567777744333333332  2368899999997 777778886542                     


Q ss_pred             ------------CCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          227 ------------TENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       227 ------------~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                  ..+.+.+..|+.........+     ...-.+.++.+++++++.++|.+.+.+
T Consensus       149 ~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        149 CDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence                        225677888988766533221     222345667778999999999988764

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.16  E-value=1.1e-09  Score=90.28  Aligned_cols=70  Identities=16%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTENR-----EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~-----~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .|+++|+++++ .+.+.+|+.+|+....     .....++.............+.++++.+++++++.+++.+.|.
T Consensus       125 ~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         125 KPDLTILLDID-PEVGLARIEARGRDDRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             CCCEEEEEeCC-HHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            68899999997 6788899998865322     2233333332222111112456777888899999999988765

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.16  E-value=1e-11  Score=103.26  Aligned_cols=80  Identities=11%  Similarity=-0.050  Sum_probs=55.7

Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHH------HHHHHHHhCCCcEEEE------EecCCHH-HHHHHHHHhc---CCCHHHHH
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQG------ARTLRRILGDSAVFVF------LAAESEM-ALVERLVERK---TENREELL  234 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~------v~iaral~~~~~~~Il------ld~~~~~-~l~~rl~~r~---~~t~~~i~  234 (286)
                      ....+.+.+.+....+.+|+.|+      +++++++...|+++++      ||+.... .+.+.+.+..   +.+...++
T Consensus       101 ~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiit  180 (204)
T cd03240         101 HQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVIT  180 (204)
T ss_pred             chHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEE
Confidence            34456666666677788899995      6788999878888877      7766566 6666665432   33566778


Q ss_pred             HHHHHHHHHhhccCCCcEEEECC
Q 043263          235 VRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       235 ~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      |....       ...||++++++
T Consensus       181 H~~~~-------~~~~d~i~~l~  196 (204)
T cd03240         181 HDEEL-------VDAADHIYRVE  196 (204)
T ss_pred             ecHHH-------HhhCCEEEEEe
Confidence            87654       35689888764

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.15  E-value=3.6e-09  Score=85.86  Aligned_cols=163  Identities=13%  Similarity=0.143  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      |++++|+|+|||||||+++.|++++...              .++|.++..  ....+.+...-.+.+. ....+. ...
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~--------------~i~gd~~~~--~~~~r~~~~g~~~~~~-~~~~~~-~~~   64 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAK--------------FIDGDDLHP--AKNIDKMSQGIPLTDE-DRLPWL-ERL   64 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCE--------------EECCcccCC--HhHHHHHhcCCCCCcc-cchHHH-HHH
Confidence            8999999999999999999999986521              144554422  1122222111111111 000000 000


Q ss_pred             HHHHHHHHh---cCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhc
Q 043263          172 KKQIREYMA---KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQH  246 (286)
Q Consensus       172 ~~~i~~~~~---~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~  246 (286)
                      .+.....+.   .|..+......+.-.+++... .+..+|+|+++ .+.+.+|+.+|.+.  +...+.+++....  ...
T Consensus        65 ~~~~~~~~~~~~~g~iv~s~~~~~~R~~~r~~~-~~~~~v~l~a~-~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e--~~~  140 (176)
T PRK09825         65 NDASYSLYKKNETGFIVCSSLKKQYRDILRKSS-PNVHFLWLDGD-YETILARMQRRAGHFMPPDLLQSQFDALE--RPC  140 (176)
T ss_pred             HHHHHHHHhcCCCEEEEEEecCHHHHHHHHhhC-CCEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHHHcC--CCC
Confidence            011111112   222121222333345555543 56678889986 88999999988542  4444444333221  111


Q ss_pred             cCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ....+-+.++.++.++++..++.+.+....
T Consensus       141 ~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~  170 (176)
T PRK09825        141 ADEHDIARIDVNHDIENVTEQCRQAVQAFR  170 (176)
T ss_pred             CCcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence            233567788888888888877777776544

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.14  E-value=3.6e-10  Score=91.80  Aligned_cols=160  Identities=17%  Similarity=0.200  Sum_probs=83.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|.+|+|+|++||||||+++.|.+.+..                 .+....+++.+.++..+....+..... . ... .
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~-----------------~~~~~~~~~~d~~r~~~~~~~~~~~~~-~-~~~-~   65 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKL-----------------KYSNVIYLDGDELREILGHYGYDKQSR-I-EMA-L   65 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH-----------------cCCcEEEEecHHHHhhcCCCCCCHHHH-H-HHH-H
Confidence            5899999999999999999999887630                 112222333344443322111000000 0 000 0


Q ss_pred             cHHHHHH-HHhcCCcEEEEeCH-H--HHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHh
Q 043263          171 PKKQIRE-YMAKGYDIVLRVDI-Q--GARTLRRILGDSAVFVFLAAESEMALVERLVER--KTENREELLVRIATAREEV  244 (286)
Q Consensus       171 ~~~~i~~-~~~~g~~~v~~~~~-q--~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~  244 (286)
                      ....+.+ ....|..+++++.. .  -...++..+ .+.++|||+++ .+.+.+|+...  .......+..++..+.+..
T Consensus        66 ~~~~l~~~l~~~g~~VI~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~  143 (176)
T PRK05541         66 KRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHL-PNYFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVGVDIPFD  143 (176)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHhhc-CCeEEEEEeCC-HHHHHHhchhhHHHHHHcCcccccccCCCccc
Confidence            0111222 23456666665432 1  233445554 45678889987 67777886532  0111122333333322222


Q ss_pred             hccCCCcEEEECCC-CCHHHHHHHHHHHHHH
Q 043263          245 QHVKNFDYVVVNAE-GKLDSAVKLVESVIDA  274 (286)
Q Consensus       245 ~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~  274 (286)
                      +  ..||.+|.+++ .++++.++++.+.++.
T Consensus       144 ~--~~Ad~vI~~~~~~~~~~~v~~i~~~l~~  172 (176)
T PRK05541        144 E--PKADLVIDNSCRTSLDEKVDLILNKLKL  172 (176)
T ss_pred             C--CCCCEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2  34888887764 3788888877776654

>PRK14531 adenylate kinase; Provisional

Probab=99.13  E-value=2.6e-09  Score=87.32  Aligned_cols=164  Identities=20%  Similarity=0.262  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      ..|.|+||+||||||+++.|+..+...+++....-|.--   ..+.+    ........+..+.+....        +..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~---~~~~~----~~~~~~~~~~~G~~v~d~--------l~~   67 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEV---AAGSA----LGQEAEAVMNRGELVSDA--------LVL   67 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHH---hcCCH----HHHHHHHHHHcCCCCCHH--------HHH
Confidence            358999999999999999999877533333221111000   00000    001112222222211110        111


Q ss_pred             HHHHHHHh--cCCcEEEEeCHHHHHHHH---HHh----CCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 043263          173 KQIREYMA--KGYDIVLRVDIQGARTLR---RIL----GDSAVFVFLAAESEMALVERLVERKT--ENREELLVRIATAR  241 (286)
Q Consensus       173 ~~i~~~~~--~g~~~v~~~~~q~v~iar---al~----~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~  241 (286)
                      ..+.+.+.  .+...+++|-+.....+.   .++    ..+..+|+++++ .+.+.+|+..|+.  .+.+.+..|++.+.
T Consensus        68 ~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~  146 (183)
T PRK14531         68 AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEVYR  146 (183)
T ss_pred             HHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence            11222222  244567777542222222   111    245668889997 8889999988754  35677888887765


Q ss_pred             HHhhcc-C----CCcEEEECCCCCHHHHHHHHHHHH
Q 043263          242 EEVQHV-K----NFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       242 ~~~~~~-~----~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .....+ +    ..-.+.++.+++++++..++.+.+
T Consensus       147 ~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        147 EKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            533221 1    122455677789999999988765

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.12  E-value=1.7e-09  Score=86.01  Aligned_cols=169  Identities=23%  Similarity=0.312  Sum_probs=104.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +..||.++|++||||-|.+..|.+.|+..+.+..+.-|.-..-.  |.+    ....+...+.++.++...        +
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse----~g~~I~~~i~~G~iVP~e--------i   72 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSE----RGALIKEIIKNGDLVPVE--------I   72 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cCh----HHHHHHHHHHcCCcCcHH--------H
Confidence            36799999999999999999999998766665444333211000  110    112223333444443321        1


Q ss_pred             cHHHHHHHHhcCC---cEEEEeCH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHH
Q 043263          171 PKKQIREYMAKGY---DIVLRVDI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRI  237 (286)
Q Consensus       171 ~~~~i~~~~~~g~---~~v~~~~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl  237 (286)
                      ..+.+.+++....   ..+++|-+    |....-+.+-..+.+++|+|++ ++...+|+..|+..      +.+.+..|+
T Consensus        73 ~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikkR~  151 (195)
T KOG3079|consen   73 TLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKKRL  151 (195)
T ss_pred             HHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence            2223333332222   27888744    4444444443378999999997 88888999877542      577888888


Q ss_pred             HHHHHHh----hccCC-CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          238 ATAREEV----QHVKN-FDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       238 ~~~~~~~----~~~~~-~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .+.....    ++.+. ....-++.++++++++.++.+.+..
T Consensus       152 et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  152 ETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            8765432    22222 2344567888999999999998864

>PRK13973 thymidylate kinase; Provisional

Probab=99.12  E-value=6.7e-09  Score=86.99  Aligned_cols=174  Identities=17%  Similarity=0.143  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc------chhhhheecc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN------ELLEYALVYG  165 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~------~~~~~~~~~~  165 (286)
                      |.+|+|-|+.||||||+++.|+..+..-+..+.. ++.|.. ..        ..+.++..+...      ...+...+.+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~-~~~p~~-~~--------~g~~ir~~l~~~~~~~~~~~~~~ll~~a   72 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV-TREPGG-SP--------GAEAIRHVLLSGAAELYGPRMEALLFAA   72 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE-EECCCC-Cc--------hHHHHHHHHcCCCccCCCHHHHHHHHHH
Confidence            8999999999999999999999887533332222 222321 11        112222222110      0111111112


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCH---------------HHHHHHHHH-h--CCCcEEEEEecCCHHHHHHHHHHhcC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDI---------------QGARTLRRI-L--GDSAVFVFLAAESEMALVERLVERKT  227 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~---------------q~v~iaral-~--~~~~~~Illd~~~~~~l~~rl~~r~~  227 (286)
                      +......+.+..++..|..++++.-.               ..+..+... .  ..|+++|+||.+ ++...+|+.+|+.
T Consensus        73 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~-~e~~~~Rl~~R~~  151 (213)
T PRK13973         73 ARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIP-AEVGLERAAKRRG  151 (213)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhccC
Confidence            21112233456667777766664211               112222211 1  368999999997 7888899987753


Q ss_pred             CC---------HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          228 EN---------REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       228 ~t---------~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      .+         .+....+........+. .....++++.+++++++..+|.+++.....
T Consensus       152 ~~~~~~~e~~~~~~~~~~~~~y~~l~~~-~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        152 SDTPDRFEKEDLAFHEKRREAFLQIAAQ-EPERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             CCccCchhhchHHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence            21         12222222222221110 111245678888999999999999987543

>PLN02200 adenylate kinase family protein

Probab=99.11  E-value=4e-09  Score=89.45  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=92.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      +.+++|+|++||||||+++.|+..++..+++....-|..    +.+..   -....+...+..+.....        ...
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~----i~~~s---~~~~~i~~~~~~G~~vp~--------e~~  107 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRRE----IASNS---EHGAMILNTIKEGKIVPS--------EVT  107 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHH----HhccC---hhHHHHHHHHHcCCCCcH--------HHH
Confidence            578999999999999999999987754333322111100    00000   000111111111111110        011


Q ss_pred             HHHHHHHHh--cCCcEEEEeCH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC----CCHHHHHHHHHHHH
Q 043263          172 KKQIREYMA--KGYDIVLRVDI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT----ENREELLVRIATAR  241 (286)
Q Consensus       172 ~~~i~~~~~--~g~~~v~~~~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----~t~~~i~~rl~~~~  241 (286)
                      ...+.+.+.  .+...+++|.+    |+..+...+-..|+.+|+|+.+ .+.+.+|+..|+.    .+.+.+..|++...
T Consensus       108 ~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~-~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~  186 (234)
T PLN02200        108 VKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCP-EEEMVKRVLNRNQGRVDDNIDTIKKRLKVFN  186 (234)
T ss_pred             HHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHcCcCCCCCCCHHHHHHHHHHHH
Confidence            112222232  23457788754    2322222221257889999997 6778889887632    24567777777655


Q ss_pred             HHhh----ccCC-CcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          242 EEVQ----HVKN-FDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       242 ~~~~----~~~~-~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ....    +.+. ...+.++.+++++++.+++.+.+....
T Consensus       187 ~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~  226 (234)
T PLN02200        187 ALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACE  226 (234)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            4422    1222 234667777899999999999988754

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.11  E-value=6e-11  Score=106.10  Aligned_cols=168  Identities=17%  Similarity=0.211  Sum_probs=96.9

Q ss_pred             hHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee-----CH
Q 043263           72 SLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV-----SK  145 (286)
Q Consensus        72 ~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~-----~~  145 (286)
                      ++.-+|+. .+.-..+-++..|+++||+|+||-||||.+++|+|.+.            |.-|..++.+-...     ..
T Consensus        79 e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~------------PNLG~~~~pp~wdeVi~~FrG  146 (591)
T COG1245          79 EVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK------------PNLGRYEDPPSWDEVIKRFRG  146 (591)
T ss_pred             cceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc------------cCCCCCCCCCCHHHHHHHhhh
Confidence            35556774 45555566666799999999999999999999999875            76666544321110     01


Q ss_pred             ----HHHHHHhhc-------cchhhhhe--ecccc---------cCccHH-----HHHHHHhcCCcEEEEeCHHHHHHHH
Q 043263          146 ----EEFLQMVDK-------NELLEYAL--VYGDY---------KGIPKK-----QIREYMAKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       146 ----~~~~~~i~~-------~~~~~~~~--~~~~~---------~~~~~~-----~i~~~~~~g~~~v~~~~~q~v~iar  198 (286)
                          ..|..+...       ..+++...  +-+..         .+...+     .+...+.+....+++|++||+++|.
T Consensus       147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa  226 (591)
T COG1245         147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA  226 (591)
T ss_pred             hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence                111111100       01111100  00000         011111     1222344555668899999999999


Q ss_pred             HHhCCCcEEEEEecCCHHHHHHHHH------Hhc--CCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          199 RILGDSAVFVFLAAESEMALVERLV------ERK--TENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       199 al~~~~~~~Illd~~~~~~l~~rl~------~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ++.++.++++|-.+.|--.+.+|+.      +..  +....++.|+++...      -.+|.|.+.-
T Consensus       227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD------~lsD~vhI~Y  287 (591)
T COG1245         227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLD------YLSDFVHILY  287 (591)
T ss_pred             HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHH------HhhheeEEEe
Confidence            9999999999955555444445543      222  235566788888631      3567666554

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.10  E-value=8.8e-09  Score=80.25  Aligned_cols=160  Identities=23%  Similarity=0.300  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc--cchhhhheecccccCc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK--NELLEYALVYGDYKGI  170 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~  170 (286)
                      .+|.|-|++||||||+++.|++.++...++         .            ..-|+.+...  ..+.+...+....+.+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vs---------a------------G~iFR~~A~e~gmsl~ef~~~AE~~p~i   59 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVS---------A------------GTIFREMARERGMSLEEFSRYAEEDPEI   59 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceee---------c------------cHHHHHHHHHcCCCHHHHHHHHhcCchh
Confidence            368999999999999999999987421111         1            1223333211  1222222222222222


Q ss_pred             cHH--HHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH------
Q 043263          171 PKK--QIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATARE------  242 (286)
Q Consensus       171 ~~~--~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~------  242 (286)
                      +.+  .-+..+.+..++++++.+..+ +++   ..+++.|||.+| .++..+|+..|.+.+...+...+..-..      
T Consensus        60 D~~iD~rq~e~a~~~nvVlegrLA~W-i~k---~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY  134 (179)
T COG1102          60 DKEIDRRQKELAKEGNVVLEGRLAGW-IVR---EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRY  134 (179)
T ss_pred             hHHHHHHHHHHHHcCCeEEhhhhHHH-Hhc---cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            211  111223346678887754222 222   367999999998 8888899999987676655432221110      


Q ss_pred             ------HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          243 ------EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       243 ------~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                            +...+..+|.||-.+.-++++++.-|...++....+
T Consensus       135 ~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~  176 (179)
T COG1102         135 KKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK  176 (179)
T ss_pred             HHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence                  111235577777545447888888887777776544

>PRK13808 adenylate kinase; Provisional

Probab=99.10  E-value=3.1e-09  Score=93.68  Aligned_cols=165  Identities=17%  Similarity=0.187  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC--HHHHHHHhhccchhhhheecccccCcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS--KEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      .|.|+||+||||||+++.|+..|...++++.+.-|.         .+...+  ...+...+..+.++.+.        +.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~---------~i~~~s~~g~~~~~~~~~G~lVPde--------iv   64 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRA---------AVAAGTPVGLKAKDIMASGGLVPDE--------VV   64 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHH---------HhhcCChhhHHHHHHHHcCCCCCHH--------HH
Confidence            388999999999999999998876444332221110         000000  11112222222222111        11


Q ss_pred             HHHHHHHHh---cCCcEEEEeCHHHHHHHHHH---h----CCCcEEEEEecCCHHHHHHHHHHh------------cCCC
Q 043263          172 KKQIREYMA---KGYDIVLRVDIQGARTLRRI---L----GDSAVFVFLAAESEMALVERLVER------------KTEN  229 (286)
Q Consensus       172 ~~~i~~~~~---~g~~~v~~~~~q~v~iaral---~----~~~~~~Illd~~~~~~l~~rl~~r------------~~~t  229 (286)
                      ...+.+.+.   .....+++|-+..+..+..+   +    ..|+++|+||.+ ++.+++|+..|            ...+
T Consensus        65 ~~li~e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~R~DD~  143 (333)
T PRK13808         65 VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEVRADDT  143 (333)
T ss_pred             HHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCccCCCCC
Confidence            111222221   23457788866444444332   2    268999999997 78888998765            1225


Q ss_pred             HHHHHHHHHHHHHHh----hccCCC-cEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          230 REELLVRIATAREEV----QHVKNF-DYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       230 ~~~i~~rl~~~~~~~----~~~~~~-d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      .+.+.+|+..+....    ++.... -.+.|+.++.+++++++|..+|....
T Consensus       144 ~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~  195 (333)
T PRK13808        144 PEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG  195 (333)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            778888887655442    222222 24556666789999999999998753

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.10  E-value=2.3e-09  Score=87.54  Aligned_cols=163  Identities=20%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      +|.|+|++||||||+++.|+..++..+++..+.-|....   .+.+    ....+...+..+.....        ....+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~---~~~~----~~~~~~~~~~~g~~~~~--------~~~~~   65 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIK---SGSE----NGELIESMIKNGKIVPS--------EVTVK   65 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHh---cCCh----HHHHHHHHHHCCCcCCH--------HHHHH
Confidence            478999999999999999998875433332211111100   0000    00111111111111110        01112


Q ss_pred             HHHHHHhc--CCcEEEEeCHHHHHHH---HHHh---CCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHH
Q 043263          174 QIREYMAK--GYDIVLRVDIQGARTL---RRIL---GDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIAT  239 (286)
Q Consensus       174 ~i~~~~~~--g~~~v~~~~~q~v~ia---ral~---~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~  239 (286)
                      .+.+.+..  +..++++|-+.....+   ..++   ..|+.+|+|+.+ .+.+.+|+..|+.      .+.+.+..|+..
T Consensus        66 ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~  144 (183)
T TIGR01359        66 LLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRT  144 (183)
T ss_pred             HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHH
Confidence            23333322  4567888743222111   1222   267889999997 7788899988753      246677777765


Q ss_pred             HHHH----hhccCCCc-EEEECCCCCHHHHHHHHHHHH
Q 043263          240 AREE----VQHVKNFD-YVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       240 ~~~~----~~~~~~~d-~viv~~~G~i~~~~~~l~~~i  272 (286)
                      ....    .++....+ .+.++.+++++++.+++.+++
T Consensus       145 y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       145 YNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            4432    22223233 456777889999999888765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14527 adenylate kinase; Provisional

Probab=99.09  E-value=5.6e-09  Score=85.94  Aligned_cols=164  Identities=19%  Similarity=0.261  Sum_probs=88.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC--HHHHHHHhhccchhhhheeccccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS--KEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      +++++.++||+||||||+++.|+..+...+.+         .|++-...+...+  .......+..+.....        
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is---------~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~--------   67 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS---------TGDILRDHVARGTELGQRAKPIMEAGDLVPD--------   67 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC---------ccHHHHHHHhcCcHHHHHHHHHHHcCCCCcH--------
Confidence            48999999999999999999999766422221         1110000000000  0001111111111110        


Q ss_pred             CccHHHHHHHHhc--CCcEEEEeCHHHH---HHHHHHh----CCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHH
Q 043263          169 GIPKKQIREYMAK--GYDIVLRVDIQGA---RTLRRIL----GDSAVFVFLAAESEMALVERLVERKT------ENREEL  233 (286)
Q Consensus       169 ~~~~~~i~~~~~~--g~~~v~~~~~q~v---~iaral~----~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i  233 (286)
                      ......+.+.+..  +...+++|-+...   ..+..++    ..+..+|+||.+ .+.+.+|+.+|..      .+.+.+
T Consensus        68 ~~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~  146 (191)
T PRK14527         68 ELILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEGRSDDNEETV  146 (191)
T ss_pred             HHHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHH
Confidence            0111223333332  3457777643111   2122221    245567889997 7888899987641      256778


Q ss_pred             HHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          234 LVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       234 ~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      ..|+..+......+     ...-.+.++.++.++++++++...+
T Consensus       147 ~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        147 RRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            88888776544321     1222455677789999999998765

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.09  E-value=2.3e-11  Score=101.73  Aligned_cols=66  Identities=11%  Similarity=-0.034  Sum_probs=43.7

Q ss_pred             EEEEeCHHHHHHHHHHhC----CCcEEEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          185 IVLRVDIQGARTLRRILG----DSAVFVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~----~~~~~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                      .+..+++|++.+++++..    .|+++++      +|+.+...+.+.+.+... .+...++|+...       ...||+|
T Consensus       127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~-------~~~~d~v  199 (212)
T cd03274         127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNM-------FELADRL  199 (212)
T ss_pred             hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHH-------HHhCCEE
Confidence            355678899999998852    3566665      666656666666665432 245556776443       3689999


Q ss_pred             EECC
Q 043263          254 VVNA  257 (286)
Q Consensus       254 iv~~  257 (286)
                      +++.
T Consensus       200 ~~~~  203 (212)
T cd03274         200 VGIY  203 (212)
T ss_pred             EEEE
Confidence            9865

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.08  E-value=6.8e-12  Score=103.77  Aligned_cols=34  Identities=32%  Similarity=0.582  Sum_probs=28.6

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .++++.+.+ | +++|+|||||||||++++|+++++
T Consensus        14 ~~~~l~~~~-g-~~~i~G~nGsGKStll~al~~l~~   47 (197)
T cd03278          14 DKTTIPFPP-G-LTAIVGPNGSGKSNIIDAIRWVLG   47 (197)
T ss_pred             CCeeeecCC-C-cEEEECCCCCCHHHHHHHHHHHhc
Confidence            445566665 8 999999999999999999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.07  E-value=8.6e-12  Score=98.29  Aligned_cols=145  Identities=13%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHHHHHH---h-hc
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEEFLQM---V-DK  154 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~~~~~---i-~~  154 (286)
                      |-..+..+.. |+++-++|||||||||++..++|+.             |-+|+  ++|.+.......++...   + ++
T Consensus        15 L~plS~qv~a-Ge~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l~~~~~~eLArhRAYLsQq   80 (248)
T COG4138          15 LGPLSGEVRA-GEILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPLEAWSATELARHRAYLSQQ   80 (248)
T ss_pred             cccccccccc-ceEEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcchhHHhHhHHHHHHHHHhhc
Confidence            5555666666 9999999999999999999999986             55666  67887655444444332   1 22


Q ss_pred             c--ch----hhhheecccccCccHHHHHH---------HHhcCCcEEEEeCHHHHHHHHHHhC-----CCc-EEEEEecC
Q 043263          155 N--EL----LEYALVYGDYKGIPKKQIRE---------YMAKGYDIVLRVDIQGARTLRRILG-----DSA-VFVFLAAE  213 (286)
Q Consensus       155 ~--~~----~~~~~~~~~~~~~~~~~i~~---------~~~~g~~~v~~~~~q~v~iaral~~-----~~~-~~Illd~~  213 (286)
                      .  .|    +.+...+... ......+.+         .+.+...-+.+|+.||+.+|...+.     +|. -++++|+|
T Consensus        81 q~p~f~mpV~~YL~L~qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP  159 (248)
T COG4138          81 QTPPFAMPVWHYLTLHQPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP  159 (248)
T ss_pred             cCCcchhhhhhhhhhcCch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence            1  12    1111111000 011112222         1333445677899999988854431     232 23334443


Q ss_pred             C------HHHHHHHHHHh---cCCCHHHHHHHHHHH
Q 043263          214 S------EMALVERLVER---KTENREELLVRIATA  240 (286)
Q Consensus       214 ~------~~~l~~rl~~r---~~~t~~~i~~rl~~~  240 (286)
                      .      .+....|+..+   .+.++++-.|++++.
T Consensus       160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhT  195 (248)
T COG4138         160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT  195 (248)
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhH
Confidence            2      33344454432   333555567777765

>PRK13946 shikimate kinase; Provisional

Probab=99.07  E-value=5.7e-09  Score=85.42  Aligned_cols=162  Identities=20%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--ccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--YKG  169 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~  169 (286)
                      ...|+|+|++||||||+++.|+..++                    .++.+.+.. ..... ...+.+....++.  ...
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg--------------------~~~id~D~~-~~~~~-g~~~~e~~~~~ge~~~~~   67 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLG--------------------LPFLDADTE-IERAA-RMTIAEIFAAYGEPEFRD   67 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC--------------------CCeECcCHH-HHHHh-CCCHHHHHHHHCHHHHHH
Confidence            46799999999999999999998763                    111111110 11110 0001000001111  111


Q ss_pred             ccHHHHHHHHhcCCcEEEEeC-HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVD-IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATARE  242 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~-~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~  242 (286)
                      ...+.+...+..+..++..+. .-...-.+..+....+.|||+++ .+.+.+|+..+.+.      +......++...+.
T Consensus        68 ~e~~~l~~l~~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~  146 (184)
T PRK13946         68 LERRVIARLLKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEERY  146 (184)
T ss_pred             HHHHHHHHHHhcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH
Confidence            223344455555544454321 10112223333345788999997 78888999876542      22222222222222


Q ss_pred             HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          243 EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       243 ~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      ..  ...+|.++..++..++++++.|.+.++....+
T Consensus       147 ~~--y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~  180 (184)
T PRK13946        147 PV--YAEADLTVASRDVPKEVMADEVIEALAAYLEK  180 (184)
T ss_pred             HH--HHhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence            21  23489888778779999999999999876543

>TIGR01351 adk adenylate kinases

Probab=99.05  E-value=1.3e-08  Score=85.11  Aligned_cols=162  Identities=20%  Similarity=0.279  Sum_probs=91.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHH
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ  174 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      |.|+||+||||||+++.|+..+...++++.+.-|..    +...   ......+...+..+..+...        +..+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~----~~~~---~~~~~~~~~~~~~g~~vp~~--------~~~~l   66 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAE----IKAG---TPLGKKAKEYMEKGELVPDE--------IVNQL   66 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHh----hccc---cHHHHHHHHHHhCCCCCCHH--------HHHHH
Confidence            789999999999999999987653333322111110    0000   00001111222222221110        11222


Q ss_pred             HHHHHhc----CCcEEEEeCHHHHHHH---HHHhC-CCcEEEEEecCCHHHHHHHHHHhc--------------------
Q 043263          175 IREYMAK----GYDIVLRVDIQGARTL---RRILG-DSAVFVFLAAESEMALVERLVERK--------------------  226 (286)
Q Consensus       175 i~~~~~~----g~~~v~~~~~q~v~ia---ral~~-~~~~~Illd~~~~~~l~~rl~~r~--------------------  226 (286)
                      +.+.+.+    +...+++|-+.....+   ...+. .+..+|+|+.+ ++.+.+|+..|.                    
T Consensus        67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~  145 (210)
T TIGR01351        67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVPG  145 (210)
T ss_pred             HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccCC
Confidence            3333433    4567888754333333   33344 57889999997 788888888763                    


Q ss_pred             -------------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263          227 -------------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       227 -------------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                                   ..+.+.+.+|+..+......+    . ..-.+.++.+++++++.++|.+.+
T Consensus       146 ~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       146 CDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             cCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence                         125678899998776543221    2 223555677779999999998875

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.04  E-value=1.9e-10  Score=98.35  Aligned_cols=68  Identities=10%  Similarity=-0.051  Sum_probs=43.5

Q ss_pred             CcEEEEeCHHHHHHHHHHhC----CCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          183 YDIVLRVDIQGARTLRRILG----DSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~----~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      ...+++|++|++.+|++++.    .|+++|+      +|+.+...+.+.|.+.. +.+...++|+...       ...||
T Consensus       156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~-------~~~~d  228 (243)
T cd03272         156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL-------LEVAD  228 (243)
T ss_pred             ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------HhhCC
Confidence            34567789999999999962    3556665      55555666666666542 2233444565433       46899


Q ss_pred             EEEECC
Q 043263          252 YVVVNA  257 (286)
Q Consensus       252 ~viv~~  257 (286)
                      +++++.
T Consensus       229 ~i~~l~  234 (243)
T cd03272         229 KFYGVK  234 (243)
T ss_pred             EEEEEE
Confidence            888764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=3.8e-11  Score=108.74  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=88.1

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHh-ccCcceeeeeecccCCCCCCcCCccee
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKDYF  141 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~i~~~~r~~~~G~~~g~~~~  141 (286)
                      ...|.+.+.+..||+  .|.+-++.+.. |..+||+|+||+|||||+++|+. ....+          |.+-++.|.+..
T Consensus        78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~-GrRYGLvGrNG~GKsTLLRaia~~~v~~f----------~veqE~~g~~t~  146 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGKILLNKANLTLSR-GRRYGLVGRNGIGKSTLLRAIANGQVSGF----------HVEQEVRGDDTE  146 (582)
T ss_pred             ccceeeeeeeeeecchhhhcCCceeeec-ccccceeCCCCCcHHHHHHHHHhcCcCcc----------CchhheeccchH
Confidence            345777888899987  67888888887 99999999999999999999986 11111          222122222211


Q ss_pred             ee----CHH-HHHHHhhcc-chhhh---heecc-cc--cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE
Q 043263          142 FV----SKE-EFLQMVDKN-ELLEY---ALVYG-DY--KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF  209 (286)
Q Consensus       142 ~~----~~~-~~~~~i~~~-~~~~~---~~~~~-~~--~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Il  209 (286)
                      -.    ..+ ....++.++ .+...   ..++. .+  .+++.+..    .+--..++||=+-++++|||++.+|++++|
T Consensus       147 ~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrMrlaLARAlf~~pDlLLL  222 (582)
T KOG0062|consen  147 ALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRMRLALARALFAKPDLLLL  222 (582)
T ss_pred             HHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHH----hccccccCcchhhHHHHHHHHhcCCCEEee
Confidence            00    000 001111111 00000   00111 11  12333322    222345777877899999999988887777


Q ss_pred             ------EecCCHHHHHHHHHHhcCCCHHHHHH
Q 043263          210 ------LAAESEMALVERLVERKTENREELLV  235 (286)
Q Consensus       210 ------ld~~~~~~l~~rl~~r~~~t~~~i~~  235 (286)
                            ||..+..-+..-|.... .|..++.|
T Consensus       223 DEPTNhLDv~av~WLe~yL~t~~-~T~liVSH  253 (582)
T KOG0062|consen  223 DEPTNHLDVVAVAWLENYLQTWK-ITSLIVSH  253 (582)
T ss_pred             cCCcccchhHHHHHHHHHHhhCC-ceEEEEec
Confidence                  66665666666666654 24444444

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.03  E-value=8.7e-11  Score=107.02  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             hhhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           64 VNKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        64 ~~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ....+.+.|+++.|.+  .+.++.+.+.+ |+.+||+|+|||||||+++++.+...
T Consensus        72 ~s~dvk~~sls~s~~g~~l~kd~~~El~~-g~rygLiG~nG~Gkst~L~~i~~~e~  126 (614)
T KOG0927|consen   72 ISRDVKIESLSLSFHGVELIKDVTLELNR-GRRYGLIGPNGSGKSTFLRAIAGREV  126 (614)
T ss_pred             ccccceeeeeeeccCCceeeeeeeEEecC-CceEEEEcCCCCcHhHHHHHHhcCCC
Confidence            3456888999999987  68899999998 99999999999999999999987643

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.03  E-value=8.1e-09  Score=87.48  Aligned_cols=52  Identities=23%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             cEEEEEecCCHHHHHHHHHHh---cCCCHHHHHHHHHH-HHH----HhhccCCCcEEEECC
Q 043263          205 AVFVFLAAESEMALVERLVER---KTENREELLVRIAT-ARE----EVQHVKNFDYVVVNA  257 (286)
Q Consensus       205 ~~~Illd~~~~~~l~~rl~~r---~~~t~~~i~~rl~~-~~~----~~~~~~~~d~viv~~  257 (286)
                      +.+||++++ .+..++|+..|   .+.+.+.+.+++.. +++    ..+....||.||.++
T Consensus       162 D~vi~v~~~-~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~  221 (229)
T PRK09270        162 DFTIFLDAP-AEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT  221 (229)
T ss_pred             CEEEEEECC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence            799999997 77777888877   35588888888864 333    234567899998766

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.03  E-value=1.8e-09  Score=88.24  Aligned_cols=176  Identities=21%  Similarity=0.288  Sum_probs=92.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-cCCcceeeeCHHHHHHHhhccch--hhhh-eeccc-
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-VNGKDYFFVSKEEFLQMVDKNEL--LEYA-LVYGD-  166 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-~~g~~~~~~~~~~~~~~i~~~~~--~~~~-~~~~~-  166 (286)
                      ..+|+|-||+||||||+++.|+..+...++..+.+.|...-.- -.+.++.  +.+.+..+.....+  .... .+.+. 
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~--d~~~~~~l~~~~~i~f~~~~~v~l~ge   81 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLD--DEDALVALAKELDISFVNDDRVFLNGE   81 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCc--cHHHHHHHHHhCCceecccceEEECCc
Confidence            3789999999999999999999988755554444333211000 0122211  22222222211111  0000 00000 


Q ss_pred             -----c------------------cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH
Q 043263          167 -----Y------------------KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLV  223 (286)
Q Consensus       167 -----~------------------~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~  223 (286)
                           +                  +....+..+.....+..++++|-    .+.-..+++.++.|||++..++.-.+|..
T Consensus        82 dvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGR----DiGTvV~PdA~lKiFLtAS~e~RA~RR~~  157 (222)
T COG0283          82 DVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGR----DIGTVVFPDAELKIFLTASPEERAERRYK  157 (222)
T ss_pred             hhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecC----CCcceECCCCCeEEEEeCCHHHHHHHHHH
Confidence                 0                  00000111122333466777763    23334578999999999998888888888


Q ss_pred             HhcCCC----HHHHHHHHHHHH-HHh----hccC-CCcEEEECCCC-CHHHHHHHHHHHHH
Q 043263          224 ERKTEN----REELLVRIATAR-EEV----QHVK-NFDYVVVNAEG-KLDSAVKLVESVID  273 (286)
Q Consensus       224 ~r~~~t----~~~i~~rl~~~~-~~~----~~~~-~~d~viv~~~G-~i~~~~~~l~~~i~  273 (286)
                      +.....    .+.+...+..-- .+.    .+++ ..|-++++.++ +++|+++++.++++
T Consensus       158 q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         158 QLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             HHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence            753322    244433332211 111    1223 35666666544 89999999999887

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.02  E-value=1.1e-08  Score=85.82  Aligned_cols=165  Identities=19%  Similarity=0.232  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|.|+|++||||||+++.|+..+...+.+..+.-|..    +.+.   ......+...+..+..+...        ...+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~----~~~~---~~~~~~~~~~~~~g~~~p~~--------~~~~   66 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAA----VKAG---TELGKEAKSYMDAGELVPDE--------IVIG   66 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHH----Hhcc---chHHHHHHHHHHcCCcCCHH--------HHHH
Confidence            4899999999999999999988764443322111100    0000   00001111222222111110        1122


Q ss_pred             HHHHHHhc---CCcEEEEeCHHHHHHHHHH------h-CCCcEEEEEecCCHHHHHHHHHHhc-----------------
Q 043263          174 QIREYMAK---GYDIVLRVDIQGARTLRRI------L-GDSAVFVFLAAESEMALVERLVERK-----------------  226 (286)
Q Consensus       174 ~i~~~~~~---g~~~v~~~~~q~v~iaral------~-~~~~~~Illd~~~~~~l~~rl~~r~-----------------  226 (286)
                      .+.+.+.+   +...+++|-+.....+..+      . ..+..+|+|+++ .+.+.+|+..|.                 
T Consensus        67 ~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~  145 (215)
T PRK00279         67 LVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPK  145 (215)
T ss_pred             HHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCC
Confidence            23333322   2367788744322222222      1 245688889987 778888888663                 


Q ss_pred             ----------------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          227 ----------------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       227 ----------------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                      ..+.+.+.+|+..+......+    + ..-.+.++.+++++++++++.+++.+
T Consensus       146 ~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        146 VEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence                            236788899998766543222    1 12255678888999999999988764

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.02  E-value=7.4e-11  Score=95.36  Aligned_cols=188  Identities=15%  Similarity=0.091  Sum_probs=101.7

Q ss_pred             hhHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           65 NKIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      +..|+++++.|.|..   .+.+.++++|. |....++|.||||||||+++|+|..-.-...+....|.|...+  ...-+
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~-gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd   89 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPA-GSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD   89 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCC-CceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence            346889999999976   68899999998 9999999999999999999999864322333333333332211  11111


Q ss_pred             eeeeCHH------HHHHHhhccch-hhhheecccccCcc---HHHHHHHHh----cCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          140 YFFVSKE------EFLQMVDKNEL-LEYALVYGDYKGIP---KKQIREYMA----KGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       140 ~~~~~~~------~~~~~i~~~~~-~~~~~~~~~~~~~~---~~~i~~~~~----~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      ..++-.+      .-+...-|+.+ .++ .+++. .+..   .+.+...+.    =....+.+||+.|+.+...++ .|.
T Consensus        90 l~YLGgeW~~~~~~agevplq~D~sae~-mifgV-~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL-~Pf  166 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGV-GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL-KPF  166 (291)
T ss_pred             eeEecccccccccccccccccccccHHH-HHhhc-cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc-cce
Confidence            1111100      00011111122 111 11111 0111   111112211    112346689999999999888 777


Q ss_pred             EEEEEecCC-------HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          206 VFVFLAAES-------EMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       206 ~~Illd~~~-------~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      .+++||.-+       ...+.+-+++.   .+.|+.-.+|..+-.      .....+++.+.+|++.
T Consensus       167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGL------e~Wpthl~yi~~Gkl~  227 (291)
T KOG2355|consen  167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGL------ETWPTHLVYIKSGKLV  227 (291)
T ss_pred             eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccch------hhcchhEEEecCCeee
Confidence            777755543       22333334321   222555556665542      2456677777777653

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.01  E-value=1.3e-08  Score=82.16  Aligned_cols=74  Identities=19%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             HhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          200 ILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       200 l~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .+.....+|+|+++ .+.+.+|+.++...      ......+.+...... .+...+|.++..++.+++++.+.|.+.++
T Consensus        93 ~l~~~~~~v~l~~~-~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~dl~idt~~~~~~e~~~~I~~~v~  170 (175)
T PRK00131         93 LLRERGTVVYLDAS-FEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDP-LYEEVADITVETDGRSPEEVVNEILEKLE  170 (175)
T ss_pred             HHHhCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH-HHHhhcCeEEeCCCCCHHHHHHHHHHHHH
Confidence            33345688899987 77788998765431      111111212111111 11245898887777899999999999887


Q ss_pred             HH
Q 043263          274 AE  275 (286)
Q Consensus       274 ~~  275 (286)
                      .+
T Consensus       171 ~~  172 (175)
T PRK00131        171 AA  172 (175)
T ss_pred             hh
Confidence            53

>PRK08233 hypothetical protein; Provisional

Probab=99.01  E-value=2.6e-08  Score=80.99  Aligned_cols=26  Identities=35%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+|+|.|++||||||+++.|++.++
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            68999999999999999999998764

>PRK14532 adenylate kinase; Provisional

Probab=99.00  E-value=8.9e-09  Score=84.48  Aligned_cols=164  Identities=19%  Similarity=0.302  Sum_probs=86.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|.|+|++||||||+++.|+..++..++++.+.-|...   -.|.+    ....+...+..+..+...        +..+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~---~~~~~----~~~~~~~~~~~g~~~~~~--------~~~~   66 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAI---ASGSE----LGQRVKGIMDRGELVSDE--------IVIA   66 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHH---HcCCH----HHHHHHHHHHCCCccCHH--------HHHH
Confidence            38899999999999999999877533333221111100   00000    001112222222111110        1111


Q ss_pred             HHHHHH---hcCCcEEEEeCHHHHHHH---HHHh----CCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHH
Q 043263          174 QIREYM---AKGYDIVLRVDIQGARTL---RRIL----GDSAVFVFLAAESEMALVERLVERKT------ENREELLVRI  237 (286)
Q Consensus       174 ~i~~~~---~~g~~~v~~~~~q~v~ia---ral~----~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl  237 (286)
                      .+.+.+   ..+..+++++-+.....+   ..++    ..|+.+|+|+.+ .+.+.+|+..|..      .+.+.+..|+
T Consensus        67 ~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl  145 (188)
T PRK14532         67 LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRL  145 (188)
T ss_pred             HHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHH
Confidence            222222   234567777743221111   1111    256689999997 7888899886631      2456677788


Q ss_pred             HHHHHHhh----ccCCCc-EEEECCCCCHHHHHHHHHHHHH
Q 043263          238 ATAREEVQ----HVKNFD-YVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       238 ~~~~~~~~----~~~~~d-~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ........    .....+ .+.++.+++++++.++|.+.+.
T Consensus       146 ~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        146 DAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            76654432    122233 3445555789999999998875

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.99  E-value=2.6e-08  Score=80.57  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=46.1

Q ss_pred             HHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          199 RILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       199 al~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .++.....+|||+.+ .+.+.+|+..+...      ........+...+.. .+...||.+|..++.+++++.++|.+.+
T Consensus        92 ~~l~~~~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~-~Y~~~Ad~~idt~~~s~~ei~~~i~~~l  169 (172)
T PRK05057         92 NRLSARGVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEALANERNP-LYEEIADVTIRTDDQSAKVVANQIIHML  169 (172)
T ss_pred             HHHHhCCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHhhCCEEEECCCCCHHHHHHHHHHHH
Confidence            444455789999997 77888998754221      112222222222211 1235699888777678999999998877


Q ss_pred             HH
Q 043263          273 DA  274 (286)
Q Consensus       273 ~~  274 (286)
                      +.
T Consensus       170 ~~  171 (172)
T PRK05057        170 ES  171 (172)
T ss_pred             hh
Confidence            53

>PLN02674 adenylate kinase

Probab=98.99  E-value=9e-09  Score=87.30  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ...+.|+||+||||+|+++.|+..+...+.++.+.-|.. ..+.-        ....+...+..+.++....        
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~--------~g~~i~~~~~~G~lvpd~i--------   94 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDDL--------   94 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccCh--------hhHHHHHHHHcCCccCHHH--------
Confidence            356899999999999999999998764443332211100 00000        0112222333333332211        


Q ss_pred             cHHHHHHHHhc---CCcEEEEeCHHHHHHHHHH---h----CCCcEEEEEecCCHHHHHHHHHHhc--------------
Q 043263          171 PKKQIREYMAK---GYDIVLRVDIQGARTLRRI---L----GDSAVFVFLAAESEMALVERLVERK--------------  226 (286)
Q Consensus       171 ~~~~i~~~~~~---g~~~v~~~~~q~v~iaral---~----~~~~~~Illd~~~~~~l~~rl~~r~--------------  226 (286)
                      ....+.+.+.+   +...+++|-+.-+..|..+   +    ..+..+|+|+.+ .+.+.+|+..|.              
T Consensus        95 v~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~  173 (244)
T PLN02674         95 VVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFA  173 (244)
T ss_pred             HHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccC
Confidence            12223333322   3457788755334444322   1    257888999986 788889987651              


Q ss_pred             -------------------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263          227 -------------------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       227 -------------------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                                         ..+.+.+.+|+..+......+    + ..-.+.++.++.+++++++|..++
T Consensus       174 pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        174 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             CCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                               225788899998776543222    1 223455677779999999998765

>PRK02496 adk adenylate kinase; Provisional

Probab=98.98  E-value=1.5e-08  Score=82.87  Aligned_cols=164  Identities=18%  Similarity=0.218  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      +.++|+||+||||||+++.|+..+...+.+....-+....   .+..    ........+..+.....        ....
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~---~~~~----~g~~~~~~~~~g~~~~~--------~~~~   66 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIK---EQTP----LGIKAQGYMDKGELVPD--------QLVL   66 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHh---ccCh----hHHHHHHHHHCCCccCH--------HHHH
Confidence            4589999999999999999998764222221111100000   0000    00001111111111110        0111


Q ss_pred             HHHHHHHh---cCCcEEEEeCHHH---HHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 043263          173 KQIREYMA---KGYDIVLRVDIQG---ARTLRRIL----GDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATA  240 (286)
Q Consensus       173 ~~i~~~~~---~g~~~v~~~~~q~---v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~  240 (286)
                      ..+.+.+.   .....+++|-+..   ...+..++    ..+..+|+|+.+ .+.+.+|+..|++.  +.+.+.+|++..
T Consensus        67 ~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~dd~~~~~~~r~~~y  145 (184)
T PRK02496         67 DLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVP-DDVVVERLLARGRKDDTEEVIRRRLEVY  145 (184)
T ss_pred             HHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            12222222   2235677774311   22222221    357888999997 88888999987542  567777888776


Q ss_pred             HHHhhc----cC-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263          241 REEVQH----VK-NFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       241 ~~~~~~----~~-~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      ......    .+ ....+.++.+++++++.+++...+
T Consensus       146 ~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        146 REQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            543221    11 123567788889999999998776

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.98  E-value=1.1e-08  Score=84.35  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      |.+|+|.|+.||||||++++|...+.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999998765

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK14526 adenylate kinase; Provisional

Probab=98.97  E-value=2e-08  Score=83.80  Aligned_cols=165  Identities=18%  Similarity=0.257  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .++|+||+||||||++++|++.+...+.+....-|...   -.+..    ....+...+..+.++....        ..+
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~---~~~t~----~g~~i~~~~~~g~lvpd~~--------~~~   66 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENI---LNSTP----LGKEIKQIVENGQLVPDSI--------TIK   66 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhc---ccCCh----hhHHHHHHHHcCccCChHH--------HHH
Confidence            37899999999999999999876533332221111000   00000    0112233333333322111        112


Q ss_pred             HHHHHHh---cCCcEEEEeCHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHhc----------------------
Q 043263          174 QIREYMA---KGYDIVLRVDIQGARTLRRILG--DSAVFVFLAAESEMALVERLVERK----------------------  226 (286)
Q Consensus       174 ~i~~~~~---~g~~~v~~~~~q~v~iaral~~--~~~~~Illd~~~~~~l~~rl~~r~----------------------  226 (286)
                      .+.+.+.   .....+++|-+..+..|.++-.  ....+|.++.+ .+.+.+|+..|.                      
T Consensus        67 lv~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~  145 (211)
T PRK14526         67 IVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGIC  145 (211)
T ss_pred             HHHHHHhcccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcC
Confidence            2233332   2345777886544444444321  22355667875 788889987642                      


Q ss_pred             -----------CCCHHHHHHHHHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          227 -----------TENREELLVRIATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       227 -----------~~t~~~i~~rl~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                 ..+.+.+.+|+..+..+..++    . ..-.+.++.+++++++.++|.+++++
T Consensus       146 ~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        146 DVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             CCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                       235788899998776543222    2 22345667778999999999988865

>PLN02459 probable adenylate kinase

Probab=98.96  E-value=1.8e-08  Score=86.01  Aligned_cols=168  Identities=18%  Similarity=0.212  Sum_probs=98.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +..+.|+||+||||||+++.|+..+...+.++...-|.. ..+    .+    ....+...+.++.++.....       
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t~----lg~~i~~~~~~G~lVPdeiv-------   93 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----GP----LGAQLKEIVNQGKLVPDEII-------   93 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----ch----hHHHHHHHHHcCCccCHHHH-------
Confidence            356888999999999999999987754444333221110 000    00    01122333344444332211       


Q ss_pred             cHHHHHHHHh-----cCCcEEEEeCHHHHHHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhc-----------------
Q 043263          171 PKKQIREYMA-----KGYDIVLRVDIQGARTLRRIL--GDSAVFVFLAAESEMALVERLVERK-----------------  226 (286)
Q Consensus       171 ~~~~i~~~~~-----~g~~~v~~~~~q~v~iaral~--~~~~~~Illd~~~~~~l~~rl~~r~-----------------  226 (286)
                       ...+.+.+.     .....+++|-+.-+..|..+-  ..+..+|+|+.+ .+.+++|+..|.                 
T Consensus        94 -~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~  171 (261)
T PLN02459         94 -FSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLK  171 (261)
T ss_pred             -HHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCccccccccccc
Confidence             122223332     234577888664445444432  256888999987 788888887542                 


Q ss_pred             ---------------------------CCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          227 ---------------------------TENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       227 ---------------------------~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                                 ..+.+.+..|+..+......+     ...-.+.++.++.++++.++|.+++..
T Consensus       172 ~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        172 GEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             cccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence                                       225677889998776543222     223345567778999999999999876


Q ss_pred             HH
Q 043263          275 EK  276 (286)
Q Consensus       275 ~~  276 (286)
                      ..
T Consensus       252 ~~  253 (261)
T PLN02459        252 DD  253 (261)
T ss_pred             hh
Confidence            54

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.96  E-value=7.6e-09  Score=82.34  Aligned_cols=156  Identities=17%  Similarity=0.262  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--ccCc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--YKGI  170 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~  170 (286)
                      ..|+|+|+.||||||+.+.|+..+.                      +.|++.+..-.........+-...+|.  ....
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~----------------------~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~   60 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALN----------------------LPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRL   60 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcC----------------------CCcccchHHHHHHHCcCHHHHHHHHhHHHHHHH
Confidence            4589999999999999999998763                      122222221111111111111111111  1112


Q ss_pred             cHHHHHHHHhcCCcEEE-EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc-C-----CCHHHHHHHHHHHHHH
Q 043263          171 PKKQIREYMAKGYDIVL-RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK-T-----ENREELLVRIATAREE  243 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~-~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~-~-----~t~~~i~~rl~~~~~~  243 (286)
                      -.+.+.+.+..+..++. ||..---.-.|..+.+...+|||+++ .+.+.+|+.... +     .+.   ...+...+.+
T Consensus        61 E~~vl~~l~~~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~---~~~l~~L~~~  136 (172)
T COG0703          61 ETEVLKELLEEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAP-FETLYERLQRDRKRPLLQTEDP---REELEELLEE  136 (172)
T ss_pred             HHHHHHHHhhcCCeEEECCCccccCHHHHHHHHhCCeEEEEeCC-HHHHHHHhccccCCCcccCCCh---HHHHHHHHHH
Confidence            23345555555533333 33332224456666677799999997 889999998322 1     122   1111221111


Q ss_pred             --hhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          244 --VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       244 --~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                        ..+...+|+++-.++.+ ++++.++.+.+...
T Consensus       137 R~~~Y~e~a~~~~~~~~~~-~~v~~~i~~~l~~~  169 (172)
T COG0703         137 RQPLYREVADFIIDTDDRS-EEVVEEILEALEGS  169 (172)
T ss_pred             HHHHHHHhCcEEecCCCCc-HHHHHHHHHHHHHh
Confidence              11135577777555444 88888888877654

>TIGR00235 udk uridine kinase

Probab=98.96  E-value=3.9e-08  Score=82.01  Aligned_cols=30  Identities=43%  Similarity=0.597  Sum_probs=27.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++++|.+++|+|+|||||||+++.|++++.
T Consensus         2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455699999999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK04182 cytidylate kinase; Provisional

Probab=98.96  E-value=3.3e-08  Score=80.24  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH---H-Hh--------hccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAR---E-EV--------QHVKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~---~-~~--------~~~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      +.+.|+|+++ .+.+.+|+..+.+.+.......+....   . ..        .....+|.+|..++-+++++++.|.+.
T Consensus        92 ~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~  170 (180)
T PRK04182         92 ADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTA  170 (180)
T ss_pred             CCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHH
Confidence            5788999997 788889998876555444322221111   0 00        112568877766666899999999998


Q ss_pred             HHHHH
Q 043263          272 IDAEK  276 (286)
Q Consensus       272 i~~~~  276 (286)
                      +....
T Consensus       171 ~~~~~  175 (180)
T PRK04182        171 IDKLL  175 (180)
T ss_pred             HHHHh
Confidence            87643

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.96  E-value=8.3e-08  Score=75.83  Aligned_cols=148  Identities=23%  Similarity=0.335  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      +.|+|+|.+|+||||+++.|.. +                    |.++..++  +   ++....+.....-....+-++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~~-l--------------------g~~~i~l~--e---l~~e~~~~~~~de~r~s~~vD~   54 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLRE-L--------------------GYKVIELN--E---LAKENGLYTEYDELRKSVIVDV   54 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHHH-h--------------------CCceeeHH--H---HHHhcCCeeccCCccceEEeeH
Confidence            3689999999999999999993 3                    23332211  1   1111111110000000112333


Q ss_pred             HHHHHHHh---cCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hhc
Q 043263          173 KQIREYMA---KGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE---VQH  246 (286)
Q Consensus       173 ~~i~~~~~---~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~---~~~  246 (286)
                      +.+...++   .....+++...      ..+++.++++|+|-++ ...+.+||+.|+. +.+.|..-+....-+   .+.
T Consensus        55 d~~~~~le~~~~~~~~Ivd~H~------~hl~~~~dlVvVLR~~-p~~L~~RLk~RGy-~~eKI~ENveAEi~~vi~~EA  126 (180)
T COG1936          55 DKLRKRLEELLREGSGIVDSHL------SHLLPDCDLVVVLRAD-PEVLYERLKGRGY-SEEKILENVEAEILDVILIEA  126 (180)
T ss_pred             HHHHHHHHHHhccCCeEeechh------hhcCCCCCEEEEEcCC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            34444444   34566776653      1344457889999987 7899999999976 666665444432211   122


Q ss_pred             cCCCcEEE--ECCCCCHHHHHHHHHHHHHH
Q 043263          247 VKNFDYVV--VNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       247 ~~~~d~vi--v~~~G~i~~~~~~l~~~i~~  274 (286)
                      ...++.++  -..+.+++++++++..++.+
T Consensus       127 ~E~~~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         127 VERFEAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             HHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence            23334443  34556899999999999985

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=9.2e-08  Score=73.95  Aligned_cols=158  Identities=25%  Similarity=0.329  Sum_probs=90.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      ..++.++|++||||||+.++|...+.              ---++|.|++  +++..+.+ .++.-+.+....+++..+.
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~--------------~~F~dgDd~H--p~~NveKM-~~GipLnD~DR~pWL~~i~   74 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELG--------------LKFIDGDDLH--PPANVEKM-TQGIPLNDDDRWPWLKKIA   74 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhC--------------CcccccccCC--CHHHHHHH-hcCCCCCcccccHHHHHHH
Confidence            45899999999999999999998763              1115677765  44444444 3333333333333332222


Q ss_pred             HHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhC--------CCc-EEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHH
Q 043263          172 KKQIREYMAKGYDIVLRVD---IQGARTLRRILG--------DSA-VFVFLAAESEMALVERLVERKTE--NREELLVRI  237 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~--------~~~-~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl  237 (286)
                       ......+..|..+++-+.   ++.-.|+|.-+.        +.. .+|+|.. +.+++.+|+.+|.+.  ....+..++
T Consensus        75 -~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf  152 (191)
T KOG3354|consen   75 -VELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQF  152 (191)
T ss_pred             -HHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHH
Confidence             223334456777777553   355566665321        122 3344665 799999999998663  555555544


Q ss_pred             HHHHHHhhccCCCc---EEEECCC-CCHHHHHHHHHHHHH
Q 043263          238 ATAREEVQHVKNFD---YVVVNAE-GKLDSAVKLVESVID  273 (286)
Q Consensus       238 ~~~~~~~~~~~~~d---~viv~~~-G~i~~~~~~l~~~i~  273 (286)
                      ++    .+ ...||   .|-+.-+ -.+++.++.|.+.+.
T Consensus       153 ~~----LE-~p~~~e~div~isv~~~~~e~iv~tI~k~~~  187 (191)
T KOG3354|consen  153 AT----LE-APDADEEDIVTISVKTYSVEEIVDTIVKMVA  187 (191)
T ss_pred             Hh----cc-CCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence            44    22 22333   3333222 467777777766553

>PRK13949 shikimate kinase; Provisional

Probab=98.95  E-value=2e-08  Score=80.95  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..|+|+|++||||||+++.|++.+.
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3599999999999999999998864

>PRK13948 shikimate kinase; Provisional

Probab=98.95  E-value=1.4e-08  Score=82.71  Aligned_cols=163  Identities=16%  Similarity=0.125  Sum_probs=81.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--c
Q 043263           90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--Y  167 (286)
Q Consensus        90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~  167 (286)
                      +.+..|+|+|..||||||+.+.|+..+.                    .++.+.+. .+.... .....+....++.  .
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg--------------------~~~iD~D~-~ie~~~-g~si~~if~~~Ge~~f   65 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALM--------------------LHFIDTDR-YIERVT-GKSIPEIFRHLGEAYF   65 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC--------------------CCEEECCH-HHHHHH-hCCHHHHHHHhCHHHH
Confidence            3467899999999999999999998763                    22222221 011110 0000010011111  1


Q ss_pred             cCccHHHHHHHHhcCCcEEE-EeC-HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 043263          168 KGIPKKQIREYMAKGYDIVL-RVD-IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELLVRIATAREE  243 (286)
Q Consensus       168 ~~~~~~~i~~~~~~g~~~v~-~~~-~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~~~  243 (286)
                      .....+.+.+.+..+..++. |+. ... ...+..+.+...+|||+++ .+.+.+|+....+  ........++.....+
T Consensus        66 R~~E~~~l~~l~~~~~~VIa~GgG~v~~-~~n~~~l~~~g~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~  143 (182)
T PRK13948         66 RRCEAEVVRRLTRLDYAVISLGGGTFMH-EENRRKLLSRGPVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLNE  143 (182)
T ss_pred             HHHHHHHHHHHHhcCCeEEECCCcEEcC-HHHHHHHHcCCeEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHHH
Confidence            11112233344433333343 111 100 1112223345678899976 8888899853321  0100011223322222


Q ss_pred             hh-ccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          244 VQ-HVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       244 ~~-~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      .. ....||.+|..++.+++++.++|.+.+....
T Consensus       144 R~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~~~  177 (182)
T PRK13948        144 REPVYRQATIHVSTDGRRSEEVVEEIVEKLWAWA  177 (182)
T ss_pred             HHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            11 1245898887777789999999988887643

>PRK13974 thymidylate kinase; Provisional

Probab=98.95  E-value=6.1e-08  Score=81.13  Aligned_cols=172  Identities=20%  Similarity=0.241  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceee----eeecccCCCCCCcCCcceeeeCHHHHHHHhhcc--c-----hhhh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFV----VTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN--E-----LLEY  160 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~----i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~--~-----~~~~  160 (286)
                      |.+|+|.|+.||||||+++.|++.++.-+..    -...++.|. |..        ..+.++..+...  .     ....
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~--------~g~~ir~~l~~~~~~~~~~~~~~~   73 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTL--------LGKSLRELLLDTSKDNSPSPLAEL   73 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCc--------hHHHHHHHHcCCCcccCCCHHHHH
Confidence            8999999999999999999999887421110    001111221 111        112223332111  0     0111


Q ss_pred             heecccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHH
Q 043263          161 ALVYGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL---GDSAVFVFLAAESEMALVERL  222 (286)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl  222 (286)
                      ..+..+.+....+.+...+..|..++.|-               +...+..+..+.   ..|+++|+||.+ .+.+.+|+
T Consensus        74 llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~-~~~~~~R~  152 (212)
T PRK13974         74 LLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEIS-VEESIRRR  152 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHH
Confidence            11111111111223455566666555431               211222222221   258999999997 77888888


Q ss_pred             HHhcCCCHHH----HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          223 VERKTENREE----LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       223 ~~r~~~t~~~----i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ..|.....+.    ...+......  ........+.++.+++++++.+++.+.+...
T Consensus       153 ~~R~dD~~e~~~~~y~~~v~~~y~--~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~  207 (212)
T PRK13974        153 KNRKPDRIEAEGIEFLERVAEGFA--LIAEERNWKVISADQSIETISNEIKETLLNN  207 (212)
T ss_pred             HhcccCchhhhhHHHHHHHHHHHH--HHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            7764322211    1111111111  1122334556677778999999999998864

>PLN02924 thymidylate kinase

Probab=98.95  E-value=3.7e-08  Score=82.72  Aligned_cols=174  Identities=13%  Similarity=0.120  Sum_probs=90.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc----chhhhheecc
Q 043263           90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN----ELLEYALVYG  165 (286)
Q Consensus        90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~----~~~~~~~~~~  165 (286)
                      ++|.+|+|.|..||||||+++.|+..+..-+..+. .++.|..+...|.        .++..+...    ...+...+..
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~-~~~ep~~~~~~g~--------~ir~~l~~~~~~~~~~~~llf~a   84 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE-LWRFPDRTTSVGQ--------MISAYLSNKSQLDDRAIHLLFSA   84 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce-eeeCCCCCChHHH--------HHHHHHhCCCCCCHHHHHHHHHH
Confidence            35899999999999999999999988753333332 2233332221121        111111110    0011111111


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeC--------------HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-CCH
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVD--------------IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT-ENR  230 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~--------------~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-~t~  230 (286)
                      ..+. ....+..++..|..+++|--              ...+......+..|+++|+||.+ .+...+|....+. ...
T Consensus        85 dR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~-~~~a~~R~~~~~~~~E~  162 (220)
T PLN02924         85 NRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDIS-PEEAAERGGYGGERYEK  162 (220)
T ss_pred             HHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCcccccc
Confidence            1111 12346666777777766521              11122122223478999999997 5566677543211 111


Q ss_pred             HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      .....++........   ....++++.++.++++.++|.+.+.....
T Consensus       163 ~~~~~rv~~~Y~~la---~~~~~vIDa~~sieeV~~~I~~~I~~~l~  206 (220)
T PLN02924        163 LEFQKKVAKRFQTLR---DSSWKIIDASQSIEEVEKKIREVVLDTVQ  206 (220)
T ss_pred             HHHHHHHHHHHHHHh---hcCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            222333333222221   12344457777899999999999987544

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.94  E-value=2.1e-08  Score=81.29  Aligned_cols=165  Identities=23%  Similarity=0.325  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|.|+|||||||||+++.|+..++..+.+..+.-|...   ..+.+    -.......+.++.++....+.    +...+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~---~~~t~----lg~~~k~~i~~g~lv~d~i~~----~~v~~   70 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI---AERTE----LGEEIKKYIDKGELVPDEIVN----GLVKE   70 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh---ccCCh----HHHHHHHHHHcCCccchHHHH----HHHHH
Confidence            48999999999999999999887655544332222110   00000    011122233444433322221    11222


Q ss_pred             HHHHHHhcCCcEEEEeCHHHHHHHHHHh-------CCCcEEEEEecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHH
Q 043263          174 QIREYMAKGYDIVLRVDIQGARTLRRIL-------GDSAVFVFLAAESEMALVERLVERK---TENREELLVRIATAREE  243 (286)
Q Consensus       174 ~i~~~~~~g~~~v~~~~~q~v~iaral~-------~~~~~~Illd~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~  243 (286)
                      .+.+. ......+.++-+..+..++++-       ...+.++.++.+ .+.+..|+..|.   ..+.+.+..|+......
T Consensus        71 rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~-~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~  148 (178)
T COG0563          71 RLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVP-EELLLERLLGRRVREDDNEETVKKRLKVYHEQ  148 (178)
T ss_pred             HHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCC-HHHHHHHHhCccccccCCHHHHHHHHHHHHhc
Confidence            22222 1112466677655555554432       255667778987 488888988763   34788888888877654


Q ss_pred             hhcc-CCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          244 VQHV-KNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       244 ~~~~-~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      ..++ .+.. +-++..+.+++..+.+.+.+
T Consensus       149 ~~pli~~y~-~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         149 TAPLIEYYS-VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ccchhhhhe-eeccCCCCHHHHHHHHHHhh
Confidence            3322 2222 66677789999998887764

>PRK14529 adenylate kinase; Provisional

Probab=98.94  E-value=6.1e-08  Score=81.27  Aligned_cols=163  Identities=17%  Similarity=0.202  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|+|+||+||||||+++.|+..+...+.+.....|..-.   .+.+    ....+...+.++.++...        +..+
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~---~~t~----lg~~i~~~i~~G~lvpde--------i~~~   66 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIG---GGTE----LGKKAKEYIDRGDLVPDD--------ITIP   66 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhcc---CCCh----HHHHHHHHHhccCcchHH--------HHHH
Confidence            488999999999999999998876444433332221100   0100    112233333333333221        1222


Q ss_pred             HHHHHHhc--CCcEEEEeCHHHHHHHHHHh-------CCCcEEEEEecCCHHHHHHHHHHhc------------------
Q 043263          174 QIREYMAK--GYDIVLRVDIQGARTLRRIL-------GDSAVFVFLAAESEMALVERLVERK------------------  226 (286)
Q Consensus       174 ~i~~~~~~--g~~~v~~~~~q~v~iaral~-------~~~~~~Illd~~~~~~l~~rl~~r~------------------  226 (286)
                      .+.+.+..  ....+++|-+.-+..|..+.       ..++.+|+|+.+ .+.+.+|+..|.                  
T Consensus        67 lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~  145 (223)
T PRK14529         67 MILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRRLCKNDNNHPNNIFIDAIK  145 (223)
T ss_pred             HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCccccccCCcccccccCCCc
Confidence            33333322  34678888664444444331       257889999987 788889887651                  


Q ss_pred             ---------------C--CC-HHHHHHHHHHHHHHh-------hccC------CCcEEEECCCCCHHHHHHHHHHHH
Q 043263          227 ---------------T--EN-REELLVRIATAREEV-------QHVK------NFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       227 ---------------~--~t-~~~i~~rl~~~~~~~-------~~~~------~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                                     +  .+ .+.|.+|+.....+.       ++.+      ..-.+.++.++.++++.++|.+.+
T Consensus       146 ~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        146 PDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             ccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                           1  12 468899998776541       1222      122556677789999999888765

>PRK03839 putative kinase; Provisional

Probab=98.94  E-value=6.2e-08  Score=78.91  Aligned_cols=146  Identities=23%  Similarity=0.244  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|.|+|++||||||+++.|+..+..........-+..                         .+..   ..+........
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-------------------------~~~~---~~~~~~~~~~~   53 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-------------------------GIGE---EKDDEMEIDFD   53 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-------------------------CCcc---cCChhhhcCHH
Confidence            5899999999999999999988642222111100000                         0000   00000000111


Q ss_pred             HHHHHH---hcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---h-c
Q 043263          174 QIREYM---AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV---Q-H  246 (286)
Q Consensus       174 ~i~~~~---~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~---~-~  246 (286)
                      .+...+   ..+..+++++...       .+..+..+|+|+++ .+.+.+|+..|+. ....+.+.......+.   + +
T Consensus        54 ~l~~~~~~~~~~~~vIidG~~~-------~l~~~~~vi~L~~~-~~~~~~Rl~~R~~-~~~~~~~~~~~~~~~~~~~~~~  124 (180)
T PRK03839         54 KLAYFIEEEFKEKNVVLDGHLS-------HLLPVDYVIVLRAH-PKIIKERLKERGY-SKKKILENVEAELVDVCLCEAL  124 (180)
T ss_pred             HHHHHHHHhccCCCEEEEeccc-------cccCCCEEEEEECC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            111111   1244577777532       12367889999987 7788899987753 2222222221111110   1 1


Q ss_pred             cCCCcEEEECCC-CCHHHHHHHHHHHHHHHH
Q 043263          247 VKNFDYVVVNAE-GKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       247 ~~~~d~viv~~~-G~i~~~~~~l~~~i~~~~  276 (286)
                      ......+.++.+ .+++++.+++.+.+....
T Consensus       125 ~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~  155 (180)
T PRK03839        125 EEKEKVIEVDTTGKTPEEVVEEILELIKSGK  155 (180)
T ss_pred             HhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence            122344555554 489999999999887643

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.93  E-value=1.2e-08  Score=84.41  Aligned_cols=160  Identities=14%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcce-eeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc-cchhhhheeccccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLH-FVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK-NELLEYALVYGDYK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~-~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~  168 (286)
                      +|.+++|+|++||||||+++.|.+.+...+ ..+.          ++|.++        +..+.. ..+.... . ...+
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~----------ld~d~~--------~~~~~~~~~~~~~~-~-~~~~   82 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYL----------LDGDNV--------RHGLCSDLGFSDAD-R-KENI   82 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEE----------EcCEeH--------HhhhhhcCCcCccc-H-HHHH
Confidence            589999999999999999999998753100 0000          233222        111000 0000000 0 0000


Q ss_pred             CccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcE-EEEEecCCHHHHHHH----HHHhcCCCHHHHHHHHHHH
Q 043263          169 GIPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAV-FVFLAAESEMALVER----LVERKTENREELLVRIATA  240 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~-~Illd~~~~~~l~~r----l~~r~~~t~~~i~~rl~~~  240 (286)
                      ....+.....+..|..++....   ......++.++....+ +|+|+++ .+.+.+|    +..+..  ...+.+ +...
T Consensus        83 ~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~-~e~~~~R~~r~l~~~~~--~~~~~~-l~~~  158 (198)
T PRK03846         83 RRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDPKGLYKKAR--AGEIRN-FTGI  158 (198)
T ss_pred             HHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCC-HHHHHhcCchhHHHHhh--cCCccC-cccc
Confidence            0011112233456666665442   3344566676654454 6899997 6677777    111110  000100 1000


Q ss_pred             HHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          241 REEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       241 ~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ....+....+|.+|..++.++++++++|.+.++.
T Consensus       159 r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        159 DSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             cccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            0011111447776655667899999998888764

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.92  E-value=7.9e-08  Score=73.88  Aligned_cols=154  Identities=19%  Similarity=0.182  Sum_probs=93.0

Q ss_pred             EcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHHHHH
Q 043263           98 SGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIRE  177 (286)
Q Consensus        98 ~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~  177 (286)
                      +|.+||||||+...|+..+..              --++|.+++  +++.+.+|- ++.-+.+....+++..+ .+.+..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~--------------~fidGDdlH--p~aNi~KM~-~GiPL~DdDR~pWL~~l-~~~~~~   62 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGA--------------KFIDGDDLH--PPANIEKMS-AGIPLNDDDRWPWLEAL-GDAAAS   62 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCC--------------ceecccccC--CHHHHHHHh-CCCCCCcchhhHHHHHH-HHHHHH
Confidence            599999999999999987641              115677654  555555552 23222222333333221 222333


Q ss_pred             HHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccCCCcE
Q 043263          178 YMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       178 ~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      ....+...++.+..   +.-.++|.-.+ .-.+|+|+.+ .+.+.+|+..|.+.  ....+..++++..   ++...-|.
T Consensus        63 ~~~~~~~~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~g~-~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE---~P~~de~v  137 (161)
T COG3265          63 LAQKNKHVVIACSALKRSYRDLLREANP-GLRFVYLDGD-FDLILERMKARKGHFMPASLLDSQFATLE---EPGADEDV  137 (161)
T ss_pred             hhcCCCceEEecHHHHHHHHHHHhccCC-CeEEEEecCC-HHHHHHHHHhcccCCCCHHHHHHHHHHhc---CCCCCCCE
Confidence            34455556665543   44455554431 2455678875 99999999998764  5666666555531   11122267


Q ss_pred             EEECCCCCHHHHHHHHHHHHHH
Q 043263          253 VVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       253 viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      |.++-+..++++++++.+.+..
T Consensus       138 i~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         138 LTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             EEeeCCCCHHHHHHHHHHHHhc
Confidence            7778788899999999888764

>PRK14528 adenylate kinase; Provisional

Probab=98.91  E-value=8.8e-08  Score=78.51  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      +.+.|+||+||||||+++.|+..+...+.++...-|..-   -.+..    ........+..+.++...        ...
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~---~~~~~----~g~~~~~~~~~g~lvp~~--------~~~   66 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV---KNQTA----MGIEAKRYMDAGDLVPDS--------VVI   66 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh---hcCCH----HHHHHHHHHhCCCccCHH--------HHH
Confidence            468999999999999999999876532322211111000   00000    000111122222211111        111


Q ss_pred             HHHHHHHhc---CCcEEEEeCHHHHHHHHHH---h----CCCcEEEEEecCCHHHHHHHHHHhc------CCCHHHHHHH
Q 043263          173 KQIREYMAK---GYDIVLRVDIQGARTLRRI---L----GDSAVFVFLAAESEMALVERLVERK------TENREELLVR  236 (286)
Q Consensus       173 ~~i~~~~~~---g~~~v~~~~~q~v~iaral---~----~~~~~~Illd~~~~~~l~~rl~~r~------~~t~~~i~~r  236 (286)
                      ..+.+.+.+   ....+++|-+.....|..+   +    ..++.+|+||.+ .+.+.+|+..|.      ..+.+.+.+|
T Consensus        67 ~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~gr~dd~~e~i~~R  145 (186)
T PRK14528         67 GIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEGRADDNEATIKNR  145 (186)
T ss_pred             HHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccCCCCCCHHHHHHH
Confidence            122333322   2356777754333333222   1    368899999997 778889988652      2368889999


Q ss_pred             HHHHHHHhhcc----C-CCcEEEECCCCCHHHHHHHHHHH
Q 043263          237 IATAREEVQHV----K-NFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       237 l~~~~~~~~~~----~-~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      ++.......++    + ..-.+.++.+++++++..++.+.
T Consensus       146 l~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        146 LDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            98776543222    1 22245566777999998888654

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=98.91  E-value=6.5e-08  Score=80.18  Aligned_cols=175  Identities=17%  Similarity=0.204  Sum_probs=95.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-----chhhhheecc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-----ELLEYALVYG  165 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~  165 (286)
                      +|++|+|-|.-||||||++++|.+.+..-+..+ ..+|.|..+.         -.+.++..+..+     ...+...+..
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v-~~trEP~~~~---------ige~iR~~ll~~~~~~~~~~e~lLfaa   71 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV-VLTREPGGTP---------IGEKIRELLLNGEEKLSPKAEALLFAA   71 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCCCh---------HHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence            489999999999999999999999876333322 2344453211         011222222211     1111111222


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhcC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRILG---DSAVFVFLAAESEMALVERLVERKT  227 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~~---~~~~~Illd~~~~~~l~~rl~~r~~  227 (286)
                      .......+.+..++..|..++++-               +...+..+...+.   .|++.+|||.+ .+.-.+|+.+|+.
T Consensus        72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~  150 (208)
T COG0125          72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGE  150 (208)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence            211223344556667776666641               2223333334454   78999999998 5666689888754


Q ss_pred             C-CHH---H--HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          228 E-NRE---E--LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       228 ~-t~~---~--i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      . +..   .  ...+......+.......-.++++.+..++++.+++.+.+....
T Consensus       151 ~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l  205 (208)
T COG0125         151 LRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERL  205 (208)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            3 221   1  12222222222211111224556777789999999998887653

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.90  E-value=1.1e-08  Score=82.92  Aligned_cols=160  Identities=14%  Similarity=0.112  Sum_probs=79.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|++++|+|++||||||+++.|++.+...                 |.++..++.+.++..+..+ .+.... .......
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~-----------------g~~v~~id~D~~~~~~~~~~~~~~~~-r~~~~~~   64 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREA-----------------GYPVEVLDGDAVRTNLSKGLGFSKED-RDTNIRR   64 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----------------CCeEEEEcCccHHHHHhcCCCCChhh-HHHHHHH
Confidence            48999999999999999999999876311                 1122222222222211100 000000 0000000


Q ss_pred             ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATARE  242 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~  242 (286)
                      . ..........|..++++.-   .+....++... .+..+|+|+++ .+.+.+|..+    +..  ...+.+.+.. ..
T Consensus        65 ~-~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~-~e~~~~R~~~~l~~~~~--~~~i~~~~~~-~~  138 (175)
T PRK00889         65 I-GFVANLLTRHGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAP-LEVCEQRDVKGLYAKAR--AGEIKHFTGI-DD  138 (175)
T ss_pred             H-HHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCC-HHHHHHhCcccHHHHHH--cCCCCCCccc-CC
Confidence            0 0011112344555555432   22233444443 45678889987 6676677311    110  0011111111 11


Q ss_pred             HhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          243 EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       243 ~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .......+|.++..++++++++++++.+.+..
T Consensus       139 ~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        139 PYEPPLNPEVECRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            11111347888777777999999999998864

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.88  E-value=1.3e-07  Score=75.62  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=78.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHH
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ  174 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      ++|+||+||||||+++.|++.++...              +++.++.  .............+.+.. .. .++....+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~--------------v~~D~~~--~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~   62 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKF--------------IEGDDLH--PAANIEKMSAGIPLNDDD-RW-PWLQNLNDA   62 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeE--------------EeCcccc--ChHHHHHHHcCCCCChhh-HH-HHHHHHHHH
Confidence            47999999999999999998764111              2222221  010011110000110000 00 000111123


Q ss_pred             HHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccCC
Q 043263          175 IREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       175 i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      ....+..+..++++...   +....++. ...+..+++++++ .+.+.+|+..|.+.  +...+..++....  ......
T Consensus        63 ~~~~l~~~~~~Vi~~t~~~~~~r~~~~~-~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~~--~~~~~e  138 (163)
T TIGR01313        63 STAAAAKNKVGIITCSALKRHYRDILRE-AEPNLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFAALE--EPLADE  138 (163)
T ss_pred             HHHHHhcCCCEEEEecccHHHHHHHHHh-cCCCEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHHHhC--CCCCCC
Confidence            33345556555554321   22222232 2223345778886 78889999988642  3334433332211  110123


Q ss_pred             CcEEEECCCCCHHHHHHHHHHHH
Q 043263          250 FDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       250 ~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      ++.++++.++.++++.+++.+.+
T Consensus       139 ~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       139 TDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             CceEEEECCCCHHHHHHHHHHHH
Confidence            57788888899999998887765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK07933 thymidylate kinase; Validated

Probab=98.88  E-value=1.7e-07  Score=78.47  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCC-CcCCcceeeeCHHHHHHHhhc-------cchhhhheec
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPG-EVNGKDYFFVSKEEFLQMVDK-------NELLEYALVY  164 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G-~~~g~~~~~~~~~~~~~~i~~-------~~~~~~~~~~  164 (286)
                      ++|+|-|..||||||+++.|...+..-+..+..+.. |..| ...|..        ++..+..       ....+...+.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~-P~~~~~~~g~~--------ir~~l~~~~~~~~~~~~~~~llf~   71 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF-PRYGRSVHADL--------AAEALHGRHGDLADSVYAMATLFA   71 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec-CCCCCCCccHH--------HHHHHcCCCCcccCCHHHHHHHHh
Confidence            479999999999999999999887643333333332 3222 122221        1221110       0011111111


Q ss_pred             ccccCccHHHHHHHHhcCCcEEEEeC--------------------HHHHHHHHH-H--hCCCcEEEEEecCCHHHHHHH
Q 043263          165 GDYKGIPKKQIREYMAKGYDIVLRVD--------------------IQGARTLRR-I--LGDSAVFVFLAAESEMALVER  221 (286)
Q Consensus       165 ~~~~~~~~~~i~~~~~~g~~~v~~~~--------------------~q~v~iara-l--~~~~~~~Illd~~~~~~l~~r  221 (286)
                      .+.... .+.+..++..|..+++|--                    ...+..... .  ...|+++|+||.+ .+...+|
T Consensus        72 a~R~~~-~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~-~e~a~~R  149 (213)
T PRK07933         72 LDRAGA-RDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVP-VELAAER  149 (213)
T ss_pred             hhhhhh-HHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCC-HHHHHHH
Confidence            111111 2345566666666665420                    011111111 1  1368999999998 6677799


Q ss_pred             HHHhcCC----------CHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCHHHHHHHHHHHH
Q 043263          222 LVERKTE----------NREELLVRIATAREEVQHVK-NFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       222 l~~r~~~----------t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      +.+|++.          .......++.....+..... ....++++.+++++++.++|.+.+
T Consensus       150 i~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        150 ARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             HHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            9887531          11122333333332222111 234566677778999999888765

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.5e-09  Score=98.35  Aligned_cols=173  Identities=15%  Similarity=0.191  Sum_probs=107.1

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      +++++++..-  .+.+++|.+.+ |+|+||.|--|||+|-+++.|.|..+            +..|+  ++|+++...++
T Consensus       264 l~v~~l~~~~--~~~dvSf~vr~-GEIlGiaGLvGaGRTEl~~~lfG~~~------------~~~G~i~l~G~~v~~~sp  328 (500)
T COG1129         264 LEVRNLSGGG--KVRDVSFTVRA-GEILGIAGLVGAGRTELARALFGARP------------ASSGEILLDGKPVRIRSP  328 (500)
T ss_pred             EEEecCCCCC--ceeCceeEEeC-CcEEEEeccccCCHHHHHHHHhCCCc------------CCCceEEECCEEccCCCH
Confidence            3455554322  37788888887 99999999999999999999999754            55666  78887766554


Q ss_pred             HH-HHHHh--------hcc-----chhhhheecccccC------ccHH----HHHHH----------HhcCCcEEEEeCH
Q 043263          146 EE-FLQMV--------DKN-----ELLEYALVYGDYKG------IPKK----QIREY----------MAKGYDIVLRVDI  191 (286)
Q Consensus       146 ~~-~~~~i--------~~~-----~~~~~~~~~~~~~~------~~~~----~i~~~----------~~~g~~~v~~~~~  191 (286)
                      .+ +..-+        .++     ...+|. ....+..      ++..    ..+++          .......+++|+.
T Consensus       329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni-~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQ  407 (500)
T COG1129         329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENI-TLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQ  407 (500)
T ss_pred             HHHHHcCCEeCCcccccCcCcCCCcHHHhe-ehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhh
Confidence            32 22211        111     112222 1111111      1111    11111          1122245778999


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      |++.++|.+..+|.++|+      +|.-....+.+-+.+.  .+.....++..+...      +..||+|+|+.+|++.
T Consensus       408 QKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEl------l~~~DRIlVm~~Gri~  480 (500)
T COG1129         408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL------LGLSDRILVMREGRIV  480 (500)
T ss_pred             hhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHH------HhhCCEEEEEECCEEE
Confidence            999999999977777777      5555556665555543  233566666655554      5799999999999763

>PRK13975 thymidylate kinase; Provisional

Probab=98.87  E-value=2.1e-07  Score=76.75  Aligned_cols=74  Identities=12%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHh-h---ccCCCcEEEECC-CCCHHHHHHHHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEV-Q---HVKNFDYVVVNA-EGKLDSAVKLVESVIDA  274 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~-~---~~~~~d~viv~~-~G~i~~~~~~l~~~i~~  274 (286)
                      ..|+++||||++ .+.+.+|+..|+..  .......++.....+. .   .......++++. +.+++++.++|.+.+..
T Consensus       112 ~~pd~vi~L~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~  190 (196)
T PRK13975        112 KKPDLVFLLDVD-IEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKD  190 (196)
T ss_pred             CCCCEEEEEcCC-HHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            468899999997 77888999877531  2222222332222221 1   111233455565 46899999999988876


Q ss_pred             HH
Q 043263          275 EK  276 (286)
Q Consensus       275 ~~  276 (286)
                      ..
T Consensus       191 ~~  192 (196)
T PRK13975        191 KI  192 (196)
T ss_pred             hC
Confidence            54

>PRK13947 shikimate kinase; Provisional

Probab=98.86  E-value=3e-08  Score=80.00  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHh-hccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTE---NREELLVRIATAREEV-QHVKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~---t~~~i~~rl~~~~~~~-~~~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      ...++|||+.+ .+.+.+|+..+...   .......++.....+. .....+|.+|..++.++++++++|.+.
T Consensus        93 ~~~~vv~L~~~-~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~~~I~~~  164 (171)
T PRK13947         93 KNGVVICLKAR-PEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVAEEIIKA  164 (171)
T ss_pred             hCCEEEEEECC-HHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence            33578999986 78888998765322   1111222332222221 112457888877777999999999883

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.84  E-value=1.7e-07  Score=82.97  Aligned_cols=158  Identities=18%  Similarity=0.229  Sum_probs=83.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc--cc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD--YK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~  168 (286)
                      ++..|+|+|++||||||+.+.|+..++                    .++...+. .+... ......+....++.  +.
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg--------------------~~~id~D~-~i~~~-~G~~i~ei~~~~G~~~fr  189 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLG--------------------VPFVELNR-EIERE-AGLSVSEIFALYGQEGYR  189 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC--------------------CCEEeHHH-HHHHH-hCCCHHHHHHHHCHHHHH
Confidence            378999999999999999999998763                    22221111 01110 00000000000111  11


Q ss_pred             CccHHHHHHHHhcCCcEEEE-e-CH-HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--------CHHHHHHHH
Q 043263          169 GIPKKQIREYMAKGYDIVLR-V-DI-QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--------NREELLVRI  237 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~-~-~~-q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--------t~~~i~~rl  237 (286)
                      ....+.+.+.+.....+++. | .. ........+. ...++|||+++ .+.+.+|+.++++.        ..+.+....
T Consensus       190 ~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~-~~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~  267 (309)
T PRK08154        190 RLERRALERLIAEHEEMVLATGGGIVSEPATFDLLL-SHCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLRRIL  267 (309)
T ss_pred             HHHHHHHHHHHhhCCCEEEECCCchhCCHHHHHHHH-hCCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHH
Confidence            12223344444433334442 1 11 1111112233 45788999987 78888999875421        123443322


Q ss_pred             HHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ....+.   .+.+|.+|.+++.+++++.++|...+...
T Consensus       268 ~~R~~~---y~~ad~~I~t~~~s~ee~~~~I~~~l~~~  302 (309)
T PRK08154        268 ASREPL---YARADAVVDTSGLTVAQSLARLRELVRPA  302 (309)
T ss_pred             HHHHHH---HHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            222211   24589888766668999999999888654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.84  E-value=1.1e-07  Score=78.57  Aligned_cols=24  Identities=46%  Similarity=0.584  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|||+||+||||||++++|.+++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06696 uridine kinase; Validated

Probab=98.83  E-value=3.9e-08  Score=83.00  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+|+|.|++||||||+++.|+..+.
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999998774

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.82  E-value=2.4e-08  Score=86.59  Aligned_cols=72  Identities=17%  Similarity=0.227  Sum_probs=44.0

Q ss_pred             CcEEEEeCH-HHHHHHHHHhCCCcEEEEEecCCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhh-----ccCCCcEE
Q 043263          183 YDIVLRVDI-QGARTLRRILGDSAVFVFLAAESEMALV---ERLVERKTENREELLVRIATAREEVQ-----HVKNFDYV  253 (286)
Q Consensus       183 ~~~v~~~~~-q~v~iaral~~~~~~~Illd~~~~~~l~---~rl~~r~~~t~~~i~~rl~~~~~~~~-----~~~~~d~v  253 (286)
                      ..++++|-. ..-..++.++   ++.|+||++.+..+.   +|..++.+.+.+.+..++..+.++.+     ....||.|
T Consensus        97 ~ivIvEG~~~l~~~~l~~~~---D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvV  173 (273)
T cd02026          97 KIVVIEGLHPLYDERVRELL---DFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVV  173 (273)
T ss_pred             CEEEEeeehhhCchhhhhhc---cEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccCcEE
Confidence            345666643 1112334455   889999998554433   34445545688888888876655443     25789988


Q ss_pred             EECC
Q 043263          254 VVNA  257 (286)
Q Consensus       254 iv~~  257 (286)
                      |...
T Consensus       174 I~~~  177 (273)
T cd02026         174 IQVL  177 (273)
T ss_pred             EEcc
Confidence            8544

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.82  E-value=1.8e-07  Score=75.31  Aligned_cols=152  Identities=24%  Similarity=0.325  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHH-HHHHhhcc-----chhhhheeccc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE-FLQMVDKN-----ELLEYALVYGD  166 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~-~~~~i~~~-----~~~~~~~~~~~  166 (286)
                      .+|+|+|++||||||+++.|++.++.                    ++  ++... +.......     .+.........
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~--------------------~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   58 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSL--------------------KL--ISAGDIFRELAAKMGLDLIEFLNYAEENPE   58 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCC--------------------ce--ecHHHHHHHHHHHcCCCHHHHHHHHhcCcH
Confidence            37999999999999999999986531                    11  11111 11111000     00000000000


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE---  243 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~---  243 (286)
                      ......+.+......+..+++++......    +-..+++.|+|+++ .+.+.+|+.+|.+.+......++......   
T Consensus        59 ~~~~~~~~i~~~~~~~~~~Vi~g~~~~~~----~~~~~d~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~  133 (171)
T TIGR02173        59 IDKKIDRRIHEIALKEKNVVLESRLAGWI----VREYADVKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKR  133 (171)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeccccee----ecCCcCEEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            00011112233332455677766432111    11235688999997 77888999998776666655444332211   


Q ss_pred             ----h-----hccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          244 ----V-----QHVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       244 ----~-----~~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                          .     .....+|.+|-.+.-.+++ ++.|.+.+
T Consensus       134 ~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       134 RYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             HHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence                0     0124567665444347888 88777654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.81  E-value=9.7e-10  Score=100.03  Aligned_cols=156  Identities=12%  Similarity=0.082  Sum_probs=81.1

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeee--------ecccCCC--CCCcCCcceeeeCHHHHHH
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVT--------ATSRPMR--PGEVNGKDYFFVSKEEFLQ  150 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~--------~~~r~~~--~G~~~g~~~~~~~~~~~~~  150 (286)
                      +...++.+.+ |.-+.|+||||||||+|.++|.|+.+.+.+...        +.-..|.  .|.+..+-++..+.+++..
T Consensus       498 v~~Ltf~i~~-G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~  576 (728)
T KOG0064|consen  498 VPKLTFQIEP-GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR  576 (728)
T ss_pred             ecceeEEecC-CceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHh
Confidence            4455677777 888999999999999999999999874432211        1111111  1223333334444444432


Q ss_pred             H-hhccchhhhheecccccCcc-HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCC-------HHHHHHH
Q 043263          151 M-VDKNELLEYALVYGDYKGIP-KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAES-------EMALVER  221 (286)
Q Consensus       151 ~-i~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~-------~~~l~~r  221 (286)
                      . +.+..+..-.... ++..+. ++.-.++..+-.+++.+|+.||+..||-+++.|...++ |+.+       +..+.+.
T Consensus       577 kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL-DEcTsAvsidvE~~i~~~  654 (728)
T KOG0064|consen  577 KGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL-DECTSAVSIDVEGKIFQA  654 (728)
T ss_pred             cCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh-hhhhcccccchHHHHHHH
Confidence            2 1111110000000 000000 00001123333467889999999999999966666655 3322       3333333


Q ss_pred             HHHhcCCCHHHHHHHHHHH
Q 043263          222 LVERKTENREELLVRIATA  240 (286)
Q Consensus       222 l~~r~~~t~~~i~~rl~~~  240 (286)
                      . +..+.+...|+||.+.+
T Consensus       655 a-k~~gi~llsithrpslw  672 (728)
T KOG0064|consen  655 A-KDAGISLLSITHRPSLW  672 (728)
T ss_pred             H-HhcCceEEEeecCccHH
Confidence            3 23344566677776643

>PRK06217 hypothetical protein; Validated

Probab=98.81  E-value=1.1e-06  Score=71.80  Aligned_cols=104  Identities=24%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      +.|+|+|++||||||+++.|+..++...+...              ++....        ....+...    .. .....
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D--------------~~~~~~--------~~~~~~~~----~~-~~~~~   54 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD--------------DYFWLP--------TDPPFTTK----RP-PEERL   54 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC--------------ceeecc--------CCCCcccc----CC-HHHHH
Confidence            56999999999999999999987642111111              111000        00000000    00 00011


Q ss_pred             HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc
Q 043263          173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK  226 (286)
Q Consensus       173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~  226 (286)
                      ..+.+.+..+...+++|.....  ...+...++.+||||++ .+...+|+..|.
T Consensus        55 ~~~~~~~~~~~~~vi~G~~~~~--~~~~~~~~d~~i~Ld~~-~~~~~~Rl~~R~  105 (183)
T PRK06217         55 RLLLEDLRPREGWVLSGSALGW--GDPLEPLFDLVVFLTIP-PELRLERLRLRE  105 (183)
T ss_pred             HHHHHHHhcCCCEEEEccHHHH--HHHHHhhCCEEEEEECC-HHHHHHHHHcCc
Confidence            1222334445567777876443  23344567889999997 777778888653

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.80  E-value=9.9e-10  Score=89.24  Aligned_cols=166  Identities=15%  Similarity=0.120  Sum_probs=90.3

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHh------
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV------  152 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i------  152 (286)
                      +++.+++.... |++-||+|.||||||-+++.+++.... +.....   | .   .++..++..+++.+.+.++      
T Consensus        22 ~VD~v~ltlnE-GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTAD---R-~---Rf~~idLL~L~Pr~RRk~ig~~isM   93 (330)
T COG4170          22 AVDRVSMTLNE-GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD---R-M---RFDDIDLLRLSPRERRKLVGHNVSM   93 (330)
T ss_pred             eeeeeeeeecc-ceeeeeeccCCCchhHHHHHHhcccccceEEEhh---h-c---ccccchhhcCChHHhhhhhccchhh
Confidence            57777888887 999999999999999999999997531 111100   0 0   0122222222332222221      


Q ss_pred             -hccc-------------h---hhhheeccccc---CccHH-H-----------HHHHHhcCCcEEEEeCHHHHHHHHHH
Q 043263          153 -DKNE-------------L---LEYALVYGDYK---GIPKK-Q-----------IREYMAKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       153 -~~~~-------------~---~~~~~~~~~~~---~~~~~-~-----------i~~~~~~g~~~v~~~~~q~v~iaral  200 (286)
                       .+..             +   +..+.+.+.+.   +-.+. .           -++.+......+-+|+-|.+.+|-|+
T Consensus        94 IFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~  173 (330)
T COG4170          94 IFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIAL  173 (330)
T ss_pred             hhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhh
Confidence             0000             0   11222322211   11111 1           11223333345667888999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          201 LGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      ...|.++|-      +++.+...+.+.|.   +..+.++..+.|++...      ...||+|-|+-=|
T Consensus       174 AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i------s~W~d~i~VlYCG  235 (330)
T COG4170         174 ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI------SQWADKINVLYCG  235 (330)
T ss_pred             ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH------HHHhhheEEEEec
Confidence            866666665      44444444443332   33333555668888775      4789988887655

>PRK13976 thymidylate kinase; Provisional

Probab=98.79  E-value=1.4e-07  Score=78.68  Aligned_cols=174  Identities=17%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcc-eeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc----cchhhhheecccc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK----NELLEYALVYGDY  167 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~  167 (286)
                      ++|+|-|.-||||||+++.|...+... +..-...++.|. |...|        +.++..+..    +...+...+..+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-~~~~g--------~~ir~~l~~~~~~~~~~~~llf~a~R   71 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFN--------ELVRGLLLSLKNLDKISELLLFIAMR   71 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-CCHHH--------HHHHHHHcCCcCCCHHHHHHHHHHHH
Confidence            369999999999999999999887532 211112333342 21111        112222111    0011111111111


Q ss_pred             cCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhcCC-C
Q 043263          168 KGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL--GDSAVFVFLAAESEMALVERLVERKTE-N  229 (286)
Q Consensus       168 ~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~--~~~~~~Illd~~~~~~l~~rl~~r~~~-t  229 (286)
                      +....+.+..++..|..+++|-               +...+..+....  ..|+++|+||.+ .+...+|+..++-+ .
T Consensus        72 ~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~-~e~a~~Ri~~~~~e~~  150 (209)
T PRK13976         72 REHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDID-IELSLSRADKNGYEFM  150 (209)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHhcccchhcc
Confidence            1112234556667777666641               112222222222  369999999997 66777887543321 1


Q ss_pred             HHHHHHHHHHHHHHhhccCCCc-EEEECC---CCC---HHHHHHHHHHHHHHHHh
Q 043263          230 REELLVRIATAREEVQHVKNFD-YVVVNA---EGK---LDSAVKLVESVIDAEKA  277 (286)
Q Consensus       230 ~~~i~~rl~~~~~~~~~~~~~d-~viv~~---~G~---i~~~~~~l~~~i~~~~~  277 (286)
                      ......++.....+... ...+ .++++.   ++.   ++++.++|.+++.....
T Consensus       151 ~~~~l~~v~~~Y~~l~~-~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~  204 (209)
T PRK13976        151 DLEFYDKVRKGFREIVI-KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK  204 (209)
T ss_pred             cHHHHHHHHHHHHHHHH-hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence            12333444444333321 1222 233333   234   99999999999987653

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.79  E-value=4.5e-09  Score=86.99  Aligned_cols=70  Identities=10%  Similarity=-0.072  Sum_probs=46.4

Q ss_pred             cEEEEeCHHHHHHHHHH----hCCCcEEEE------EecCCHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhccC
Q 043263          184 DIVLRVDIQGARTLRRI----LGDSAVFVF------LAAESEMALVERLVER-----KTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral----~~~~~~~Il------ld~~~~~~l~~rl~~r-----~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                      ..+.+|++|++.+++++    +.+|+++|+      +|+.....+.+.|.+.     ++.+...++|.+..       +.
T Consensus       108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-------i~  180 (198)
T cd03276         108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-------LA  180 (198)
T ss_pred             cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-------cc
Confidence            45667899999999988    467777777      6666555565555442     11244555687776       45


Q ss_pred             CCcEEEECCCCC
Q 043263          249 NFDYVVVNAEGK  260 (286)
Q Consensus       249 ~~d~viv~~~G~  260 (286)
                      .+|+|.++..++
T Consensus       181 ~~d~v~~~~~~~  192 (198)
T cd03276         181 SSDDVKVFRMKD  192 (198)
T ss_pred             cccceeEEEecC
Confidence            568888876554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.79  E-value=8.8e-08  Score=79.11  Aligned_cols=27  Identities=48%  Similarity=0.608  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+|||.|+|||||||+++.|...+.
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            357999999999999999999998876

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.78  E-value=6.1e-08  Score=85.20  Aligned_cols=118  Identities=16%  Similarity=0.155  Sum_probs=77.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhhe
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYAL  162 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~  162 (286)
                      +.+++|+||+||||||++..|+..+..         ++..+..+|++|..++..|.++++++..++...+..+.|.+.. 
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a-   82 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA-   82 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH-
Confidence            578999999999999999999987653         4455677899999999999999988766555444444444422 


Q ss_pred             ecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 043263          163 VYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVER  225 (286)
Q Consensus       163 ~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r  225 (286)
                               .+.+++...+|...++.|.-...  .++++..  +.  ..+++...+.+++..+
T Consensus        83 ---------~~~i~~i~~~gk~pIlvGGt~~Y--~~al~~g--~~--~~p~~~~~~r~~l~~~  130 (307)
T PRK00091         83 ---------LAAIADILARGKLPILVGGTGLY--IKALLEG--LS--PLPPADPELRAELEAL  130 (307)
T ss_pred             ---------HHHHHHHHhCCCCEEEECcHHHH--HHHhccC--CC--CCCCCCHHHHHHHHHH
Confidence                     45566777777776654432111  3344422  11  3445455555555543

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.77  E-value=1.3e-08  Score=90.52  Aligned_cols=158  Identities=15%  Similarity=0.205  Sum_probs=89.4

Q ss_pred             HHhHhHHHHhcc--------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcc
Q 043263           68 ELLRSLEASLGH--------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~--------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~  139 (286)
                      .++.++..+||.        .|.++++.+.+ |.+++|+|+|||||||+++++.|.......    ....|++|.+.   
T Consensus       378 ~e~~~IleSFGv~~r~ieryvlr~vNL~ikp-GdvvaVvGqSGaGKttllRmi~G~~~~~~e----e~y~p~sg~v~---  449 (593)
T COG2401         378 NEFQDILESFGVRQRVIERYVLRNLNLEIKP-GDVVAVVGQSGAGKTTLLRMILGAQKGRGE----EKYRPDSGKVE---  449 (593)
T ss_pred             hHHHHHHHHhcchheeeeeeeeeceeeEecC-CCeEEEEecCCCCcchHHHHHHHHhhcccc----cccCCCCCcee---
Confidence            566777777764        69999999999 999999999999999999999987431111    11125555411   


Q ss_pred             eeeeCHHHHHHHhh--------ccchhhhh-eeccc---------ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHh
Q 043263          140 YFFVSKEEFLQMVD--------KNELLEYA-LVYGD---------YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       140 ~~~~~~~~~~~~i~--------~~~~~~~~-~~~~~---------~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~  201 (286)
                         +.......+++        ...++++. ..-+.         ..++..+..   ......-++.||..+..+|+.+.
T Consensus       450 ---vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAklla  523 (593)
T COG2401         450 ---VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLA  523 (593)
T ss_pred             ---ccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHh
Confidence               01111112211        11122211 00000         011111111   12233457789999999999998


Q ss_pred             CCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHH
Q 043263          202 GDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIAT  239 (286)
Q Consensus       202 ~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~  239 (286)
                      ..|.+++.      ||+.+...+.+.+.+.   .+.|...++||-+.
T Consensus       524 erpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv  570 (593)
T COG2401         524 ERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV  570 (593)
T ss_pred             cCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence            66677665      7776555555544432   22344555665554

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.77  E-value=2e-07  Score=80.05  Aligned_cols=156  Identities=14%  Similarity=0.197  Sum_probs=81.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      +|.|+|++||||||+++.|+..+.                 ..|.++..++.+.++..+..  +..  ............
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~-----------------~~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~~   59 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLS-----------------EKNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTLY   59 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH-----------------HcCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHHH
Confidence            478999999999999999998753                 11233333343433332210  000  000001111223


Q ss_pred             HHHHHHhcCCcEEEEeCH----HH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh-
Q 043263          174 QIREYMAKGYDIVLRVDI----QG---ARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ-  245 (286)
Q Consensus       174 ~i~~~~~~g~~~v~~~~~----q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~-  245 (286)
                      .+...+..+..+++++..    .+   ...++.. ..+..+|+++++ .+.+.+|...|+......+..++....+... 
T Consensus        60 ~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~-~~~~~~I~l~~p-~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~  137 (249)
T TIGR03574        60 LIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEY-NKNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYEKFDEPGT  137 (249)
T ss_pred             HHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhC-CCCEEEEEecCC-HHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCC
Confidence            456667778777777532    11   2223322 345677889987 7788889887765322233333322211111 


Q ss_pred             c--cCCCcEEEECCCC--CHHHHHHHHHHHHH
Q 043263          246 H--VKNFDYVVVNAEG--KLDSAVKLVESVID  273 (286)
Q Consensus       246 ~--~~~~d~viv~~~G--~i~~~~~~l~~~i~  273 (286)
                      .  ...++.++ +.++  .++++.++|.+.+.
T Consensus       138 ~~~wd~~~~~v-d~~~~~~~~ei~~~i~~~~~  168 (249)
T TIGR03574       138 KYSWDLPDLTI-DTTKKIDYNEILEEILEISE  168 (249)
T ss_pred             CCCccCceEEe-cCCCCCCHHHHHHHHHHHhh
Confidence            0  12344444 5444  55788888877654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.77  E-value=2.2e-07  Score=81.89  Aligned_cols=149  Identities=15%  Similarity=0.114  Sum_probs=76.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheec---c-cc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVY---G-DY  167 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~~  167 (286)
                      +.+|.++|++||||||+++.|+..++                     .+..++.+.++..+....-.....+.   . ..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~---------------------~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~   60 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP---------------------KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLV   60 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC---------------------CCEEEeccHHHHHhcCCCcccccccChHHHHHH
Confidence            36789999999999999999998752                     11222333333322110000000000   0 00


Q ss_pred             cCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHH---H
Q 043263          168 KGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE--NREELL---V  235 (286)
Q Consensus       168 ~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~---~  235 (286)
                      +....+.+...+..|..++++...    ++. ....+   ..-...+|+++++ .+.+.+|+.+|++.  +.+.+.   +
T Consensus        61 ~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~-~~~~la~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~  138 (300)
T PHA02530         61 TKAQEAAALAALKSGKSVIISDTNLNPERRR-KWKELAKELGAEFEEKVFDVP-VEELVKRNRKRGERAVPEDVLRSMFK  138 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEEeCCCCCHHHHH-HHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHccCcCCCCHHHHHHHHH
Confidence            111223345556778888886421    221 22222   1122335778885 88999999998543  556665   4


Q ss_pred             HHHHHHHHhh-----ccCCCcEEEECCCCCHHH
Q 043263          236 RIATAREEVQ-----HVKNFDYVVVNAEGKLDS  263 (286)
Q Consensus       236 rl~~~~~~~~-----~~~~~d~viv~~~G~i~~  263 (286)
                      +++.......     .....+.++++-+|++.+
T Consensus       139 ~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        139 QMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             HHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence            4443322110     112245677777777654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.75  E-value=8.1e-08  Score=74.94  Aligned_cols=112  Identities=27%  Similarity=0.407  Sum_probs=62.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchh---hhheecccccCc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELL---EYALVYGDYKGI  170 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~  170 (286)
                      +|.++|++||||||+++.|.+.++                      ...++.+.+...+......   .........+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~----------------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG----------------------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQI   58 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST----------------------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC----------------------CEEEeHHHHHHHHcccccccchhHHHHHHHHHHH
Confidence            588999999999999999997653                      2234444444433211000   000000111112


Q ss_pred             cHHHHHHHHhcCCcEEEEeCH---HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDI---QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE  228 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~---q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~  228 (286)
                      ..+.+...+..|..++++...   ........+   .+-+..+|+++++ .+.+.+|+..|...
T Consensus        59 ~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   59 LNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNRE  121 (143)
T ss_dssp             HHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCC
T ss_pred             HHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCc
Confidence            234556677889898887422   111122222   2234566778886 78888999887653

...

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.74  E-value=9.4e-08  Score=78.25  Aligned_cols=160  Identities=20%  Similarity=0.260  Sum_probs=83.2

Q ss_pred             EEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhh-ccch---hhhheecccccCccH
Q 043263           97 ISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD-KNEL---LEYALVYGDYKGIPK  172 (286)
Q Consensus        97 l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~-~~~~---~~~~~~~~~~~~~~~  172 (286)
                      |-|..||||||+++.|.+.+..-+.. ...+++|..+     ++    .+.++..+. ....   .....+.........
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~~-----~~----g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~   70 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGST-----PI----GELIRELLRSESELSPEAEALLFAADRAWHLA   70 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTSS-----HH----HHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCC-----hH----HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            46999999999999999887533322 1112222211     11    122333322 0110   111111111101122


Q ss_pred             HHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHhcCC-----CH
Q 043263          173 KQIREYMAKGYDIVLRV---------------DIQGARTLRRILG--DSAVFVFLAAESEMALVERLVERKTE-----NR  230 (286)
Q Consensus       173 ~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~~--~~~~~Illd~~~~~~l~~rl~~r~~~-----t~  230 (286)
                      ..+..++..|..++++-               ....+......+.  .|+++||||.+ .+...+|+..|+..     ..
T Consensus        71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~-pe~~~~R~~~r~~~~~~~~~~  149 (186)
T PF02223_consen   71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVD-PEEALKRIAKRGEKDDEEEED  149 (186)
T ss_dssp             HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECC-HHHHHHHHHHTSSTTTTTTHH
T ss_pred             HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecC-HHHHHHHHHcCCccchHHHHH
Confidence            34566677787777752               1122222222222  88999999997 77888999988661     11


Q ss_pred             HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHH
Q 043263          231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLV  268 (286)
Q Consensus       231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l  268 (286)
                      .....+......+... .....++++.+.+++++.++|
T Consensus       150 ~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  150 LEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence            2223333333333332 466778888888898888775

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.74  E-value=1.4e-07  Score=77.06  Aligned_cols=157  Identities=13%  Similarity=0.170  Sum_probs=78.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|.+++|+|++||||||+++.|.+.+..                 .|.....++.+.++..+..+ .+... ...... .
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~-----------------~~~~~~~l~~d~~r~~l~~~~~~~~~-~~~~~~-~   77 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLES-----------------KGYRVYVLDGDNVRHGLNKDLGFSEE-DRKENI-R   77 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCcEEEECChHHHhhhccccCCCHH-HHHHHH-H
Confidence            4899999999999999999999987631                 12122222333333221110 01000 000000 0


Q ss_pred             ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHHH----Hhc-CCCHHHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGD-SAVFVFLAAESEMALVERLV----ERK-TENREELLVRIATA  240 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~-~~~~Illd~~~~~~l~~rl~----~r~-~~t~~~i~~rl~~~  240 (286)
                      .........+..|..++++.-   ......++.++.. +..+++++++ .+.+.+|-.    ... ......+    ...
T Consensus        78 ~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~l----~~~  152 (184)
T TIGR00455        78 RIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQRDPKGLYKKARNGEIKGF----TGI  152 (184)
T ss_pred             HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCchhHHHHHhcCCccCc----ccc
Confidence            001122334567777777642   3333555565533 3456789987 666666621    100 0011001    000


Q ss_pred             HHHhhccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          241 REEVQHVKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       241 ~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      ....+....+|.+|..++.++++..+++.+.
T Consensus       153 ~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~  183 (184)
T TIGR00455       153 DSPYEAPENPEVVLDTDQNDREECVGQIIEK  183 (184)
T ss_pred             cCCCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence            0111112467877766656898888887654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.74  E-value=1.8e-07  Score=87.34  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=29.8

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .++|+.+..  ++.+|+|.|||||||||+++.|+..+.
T Consensus       274 LIDN~~~~~--~~~ii~i~G~sgsGKst~a~~la~~l~  309 (512)
T PRK13477        274 LIDNVFLMK--RQPIIAIDGPAGAGKSTVTRAVAKKLG  309 (512)
T ss_pred             EEeeeEecc--CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            356665544  489999999999999999999998775

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.73  E-value=1e-08  Score=87.91  Aligned_cols=66  Identities=11%  Similarity=-0.063  Sum_probs=43.3

Q ss_pred             EEEEeCHHHHHHHHHHhCC----CcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          185 IVLRVDIQGARTLRRILGD----SAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~----~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      .+.+|++|++.++++++..    |+++|+      ||+.....+.+.+.+..  +.+...++|+.+.       ...||+
T Consensus       155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-------~~~~d~  227 (247)
T cd03275         155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-------FSKADA  227 (247)
T ss_pred             HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-------HhhCCe
Confidence            4567888999999998743    455555      44444445555555432  3366677887555       467999


Q ss_pred             EEECC
Q 043263          253 VVVNA  257 (286)
Q Consensus       253 viv~~  257 (286)
                      ++++.
T Consensus       228 i~~~~  232 (247)
T cd03275         228 LVGVY  232 (247)
T ss_pred             EEEEE
Confidence            98764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00625 shikimate kinase; Provisional

Probab=98.73  E-value=2.5e-07  Score=74.78  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .|.|+|.+||||||+++.|+..+.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998764

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.71  E-value=2.7e-07  Score=74.47  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=40.8

Q ss_pred             HHhCCCcEEEEEecCCHHHHHHHHHHhcC---------CC-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHH
Q 043263          199 RILGDSAVFVFLAAESEMALVERLVERKT---------EN-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLV  268 (286)
Q Consensus       199 al~~~~~~~Illd~~~~~~l~~rl~~r~~---------~t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l  268 (286)
                      .++....++|||+.+ .+.+.+|+..+..         .. ...+...+....+..  ...++.+| +.+++++++.+++
T Consensus        89 ~~l~~~~~~v~l~~~-~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y--~~~a~~~I-d~~~~~e~v~~~i  164 (171)
T PRK03731         89 HFMRNNGIVIYLCAP-VSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALY--REVAHHII-DATQPPSQVVSEI  164 (171)
T ss_pred             HHHHhCCEEEEEECC-HHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHH--HHhCCEEE-cCCCCHHHHHHHH
Confidence            344456789999997 7788899876421         11 122211111111111  13355544 6668899999998


Q ss_pred             HHHHH
Q 043263          269 ESVID  273 (286)
Q Consensus       269 ~~~i~  273 (286)
                      .+.+.
T Consensus       165 ~~~l~  169 (171)
T PRK03731        165 LSALA  169 (171)
T ss_pred             HHHHh
Confidence            88764

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.71  E-value=3e-09  Score=91.44  Aligned_cols=65  Identities=6%  Similarity=-0.100  Sum_probs=41.3

Q ss_pred             EEEEeCHHHHHHHHHHhC---CCcEEEEEecCC-------HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          185 IVLRVDIQGARTLRRILG---DSAVFVFLAAES-------EMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~---~~~~~Illd~~~-------~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                      .+.++++|++++++++..   .++.++++|+|+       .+.+.+.|.+. .+.+...++|+.+.       ...||+|
T Consensus       166 ~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~-------~~~~d~v  238 (251)
T cd03273         166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGM-------FNNANVL  238 (251)
T ss_pred             ccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH-------HHhCCEE
Confidence            455678899999998863   344455545444       55666666543 23356777888544       4679988


Q ss_pred             EEC
Q 043263          254 VVN  256 (286)
Q Consensus       254 iv~  256 (286)
                      +-.
T Consensus       239 ~~~  241 (251)
T cd03273         239 FRT  241 (251)
T ss_pred             EEE
Confidence            743

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.71  E-value=1.9e-07  Score=91.56  Aligned_cols=89  Identities=15%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             cEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHhhccCCC-cEEEECCC
Q 043263          184 DIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR----EEVQHVKNF-DYVVVNAE  258 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~----~~~~~~~~~-d~viv~~~  258 (286)
                      .++++|-    .+.-..+++.++-|||+++.+....+|..+....+.+.+...+..-.    ....++..+ |-++++++
T Consensus       139 ~~v~eGR----digtvv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts  214 (712)
T PRK09518        139 GIVAEGR----DITTVVAPDAEVRILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNS  214 (712)
T ss_pred             cEEEecC----ccceEEecCCCeEEEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECC
Confidence            5666653    12223456789999999997777777776654345666654443211    112223445 45555554


Q ss_pred             C-CHHHHHHHHHHHHHHHH
Q 043263          259 G-KLDSAVKLVESVIDAEK  276 (286)
Q Consensus       259 G-~i~~~~~~l~~~i~~~~  276 (286)
                      . +++++++.+.++++...
T Consensus       215 ~~~~~~v~~~i~~~i~~~~  233 (712)
T PRK09518        215 DLDFDETLDLLIGLVEDAI  233 (712)
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            4 89999999999887654

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.71  E-value=5.7e-09  Score=103.84  Aligned_cols=43  Identities=23%  Similarity=0.295  Sum_probs=35.8

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      .+++++++.   ..|.++++.++. |++++|+|+||||||||++.+.
T Consensus       614 ~L~v~~l~~---~~L~~isl~Ip~-GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        614 FLKLKGARE---NNLKNVDVEIPL-GKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             eEEecCCcc---CCcCceEEEEeC-CCEEEEEcCCCCCHHHHHHHHH
Confidence            366777752   258899999998 9999999999999999998763

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.71  E-value=2.6e-07  Score=74.10  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=43.5

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccCC--CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~~~~--~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .+..+|+|+++ .+.+.+|+..|.+.  +...+.+++...    +....  -+.++++....+++...++...+++
T Consensus        90 ~~~~~v~l~a~-~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~----ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545         90 PNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVTQFETL----QEPGADETDVLVVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             CCEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHHHHHHc----CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            45566778886 89999999998642  344454444332    22211  3456677777788888888877754

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.70  E-value=6.1e-07  Score=70.42  Aligned_cols=72  Identities=26%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             CCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHH----hhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATAREE----VQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~~----~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      +|+.+++|.+++++.+.+|+..    |...+.+.|....+..+-.    .-....-=.|+.|++|+.+++..++..+++.
T Consensus       109 ~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         109 NPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             CCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            8999999999989999899875    2333566663332222111    1111223367788889999999999988864

>PRK07429 phosphoribulokinase; Provisional

Probab=98.70  E-value=1.3e-07  Score=84.00  Aligned_cols=73  Identities=15%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             CcEEEEeCH-HHHHHHHHHhCCCcEEEEEecCCHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhh-----ccCCCcEE
Q 043263          183 YDIVLRVDI-QGARTLRRILGDSAVFVFLAAESEMALV---ERLVERKTENREELLVRIATAREEVQ-----HVKNFDYV  253 (286)
Q Consensus       183 ~~~v~~~~~-q~v~iaral~~~~~~~Illd~~~~~~l~---~rl~~r~~~t~~~i~~rl~~~~~~~~-----~~~~~d~v  253 (286)
                      ..++++|-. ..-..++.++   ++.||||++.+..+.   +|..++.+.+.+.+..++..++++..     ....||.|
T Consensus       106 ~iVIvEG~~~l~~~~lr~~~---D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiV  182 (327)
T PRK07429        106 KIVVVEGLHPLYDERVRELY---DFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVV  182 (327)
T ss_pred             cEEEEechhhcCcHhHHhhC---CEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEE
Confidence            355666643 1122344555   899999998544443   33444445588888888877665544     25789988


Q ss_pred             EECCC
Q 043263          254 VVNAE  258 (286)
Q Consensus       254 iv~~~  258 (286)
                      |.+.-
T Consensus       183 I~~~p  187 (327)
T PRK07429        183 IQFLP  187 (327)
T ss_pred             EEcCC
Confidence            87653

>PLN02199 shikimate kinase

Probab=98.70  E-value=6.7e-07  Score=77.37  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHh-hccchhhhheecccc--c
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV-DKNELLEYALVYGDY--K  168 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~--~  168 (286)
                      |..|+|+|..||||||+.++|+..+.                    ..  +++.+.+-... ....+.+....+|..  .
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg--------------------~~--fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR  159 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLG--------------------YT--FFDCDTLIEQAMNGTSVAEIFVHHGENFFR  159 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--------------------CC--EEehHHHHHHHhcCCCHHHHHHHhCHHHHH
Confidence            77899999999999999999998653                    22  22222211111 111111111112211  1


Q ss_pred             CccHHHHHHHHhcCCcEEE--EeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc---C-----CCHHH---HHH
Q 043263          169 GIPKKQIREYMAKGYDIVL--RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERK---T-----ENREE---LLV  235 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~--~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~---~-----~t~~~---i~~  235 (286)
                      ..-.+.+.+.... ..+++  +|..---...+.++. ...+||||++ .+.+.+||...+   +     .+...   ...
T Consensus       160 ~~E~e~L~~L~~~-~~~VIStGGG~V~~~~n~~~L~-~G~vV~Ldas-~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~  236 (303)
T PLN02199        160 GKETDALKKLSSR-YQVVVSTGGGAVIRPINWKYMH-KGISIWLDVP-LEALAHRIAAVGTDSRPLLHDESGDAYSVAFK  236 (303)
T ss_pred             HHHHHHHHHHHhc-CCEEEECCCcccCCHHHHHHHh-CCeEEEEECC-HHHHHHHHhhcCCCCCCcCCCCCcchhhhHHH
Confidence            1112223333332 23333  222111122233443 4689999997 788889998511   0     11111   112


Q ss_pred             HHHHHHHH-hhccCCCcEEEE------------CCCCCHHHHHHHHHHHHHHHHh
Q 043263          236 RIATAREE-VQHVKNFDYVVV------------NAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       236 rl~~~~~~-~~~~~~~d~viv------------~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      ++.....+ .+....||.+|.            .++.++++++.+|.+.+.+...
T Consensus       237 ~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~  291 (303)
T PLN02199        237 RLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE  291 (303)
T ss_pred             HHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            33333322 122244998886            4556889999998888887654

>TIGR00017 cmk cytidylate kinase

Probab=98.69  E-value=4.6e-07  Score=75.96  Aligned_cols=25  Identities=52%  Similarity=0.793  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+|+|+||+||||||+++.|++.++
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998664

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.69  E-value=4.2e-07  Score=74.71  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHHH
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ  174 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      |.|+|++||||||+++.|+..+...++++...-+...    ...  . .....+...+..+.....        ....+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~----~~~--~-~~~~~~~~~~~~g~~~~~--------~~~~~l   66 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI----ASG--T-ELGKKAKEYIDSGKLVPD--------EIVIKL   66 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH----hcC--C-hHHHHHHHHHHcCCccCH--------HHHHHH
Confidence            7899999999999999999886533333221111000    000  0 000111111111111100        011122


Q ss_pred             HHHHHhc---CCcEEEEeCH---HHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhc
Q 043263          175 IREYMAK---GYDIVLRVDI---QGARTLRRILG---DSAVFVFLAAESEMALVERLVERK  226 (286)
Q Consensus       175 i~~~~~~---g~~~v~~~~~---q~v~iaral~~---~~~~~Illd~~~~~~l~~rl~~r~  226 (286)
                      +...+..   +...+++|-+   ...........   .+..+|+|+++ .+.+.+|+..|.
T Consensus        67 ~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~  126 (194)
T cd01428          67 LKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRR  126 (194)
T ss_pred             HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence            3333332   4566777632   11223333343   67889999997 788889998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
2j41_A	207	Crystal Structure Of Staphylococcus Aureus Guanylat		1e-33
1s4q_A	228	Crystal Structure Of Guanylate Kinase From Mycobact		1e-32
1znw_A	207	Crystal Structure Of Unliganded Form Of Mycobacteri		2e-32
1z8f_A	228	Guanylate Kinase Double Mutant A58c, T157c From Myc		8e-32
1gky_A	187	Refined Structure Of The Complex Between Guanylate		3e-29
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		3e-29
4f4j_A	202	Conversion Of The Enzyme Guanylate Kinase Into A Mi		6e-29
3lnc_A	231	Crystal Structure Of Guanylate Kinase From Anaplasm		3e-28
3tr0_A	205	Structure Of Guanylate Kinase (Gmk) From Coxiella B		6e-28
2an9_A	207	Crystal Structure Of Oligomeric E.Coli Guanylate Ki		4e-27
1s96_A	219	The 2.0 A X-Ray Structure Of Guanylate Kinase From		2e-25
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		5e-24
3tau_A	208	Crystal Structure Of A Putative Guanylate Monophosp		2e-22
1z6g_A	218	Crystal Structure Of Guanylate Kinase From Plasmodi		8e-17
2qor_A	204	Crystal Structure Of Plasmodium Vivax Guanylate Kin		4e-15
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		3e-10
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		2e-07
3tvt_A	292	Structural Basis For Discs Large Interaction With P		2e-04
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		7e-04
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		7e-04

>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 127/191 (66%), Gaps = 5/191 (2%)
Query: 93  LIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           L+IV+SGPSGVGK TV K++ E    S  + ++ T+R MR GEV+G DYFF +++ F  +
Sbjct: 7   LLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL 66
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           +  ++ +EYA   G+Y G P + +++ M +G+D+ L ++++GA+ +R+   D A+F+FLA
Sbjct: 67  IKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPD-ALFIFLA 125
Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L ERLV R TE+ E++  RI  AR+EV+ +  +DYVVVN E +L  A   ++ +
Sbjct: 126 PPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVEL--AKNRIQCI 183
Query: 272 IDAEKAKVRQR 282
           ++AE  K R+R
Sbjct: 184 VEAEHLK-RER 193

>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 73  LEASLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           +  S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R 
Sbjct: 1   MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA 60
Query: 130 MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVL 187
            RPGEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++
Sbjct: 61  PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120
Query: 188 RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV 247
            VD+ GAR +++ + + AV VFLA  S   L  RL+ R TE  + +  R+ TAR E+   
Sbjct: 121 EVDLAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQ 179
Query: 248 KNFDYVVVNAEGKLDSAVKLVESVI 272
            +FD VVVN   +L+SA   + S++
Sbjct: 180 GDFDKVVVNR--RLESACAELVSLL 202

>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 8/202 (3%)
Query: 76  SLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP 132
           S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R  RP
Sbjct: 1   SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 60
Query: 133 GEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVLRVD 190
           GEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++ VD
Sbjct: 61  GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 120
Query: 191 IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250
           + GAR +++ + + AV VFLA  S   L  RL+ R TE  + +  R+ TAR E+    +F
Sbjct: 121 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179
Query: 251 DYVVVNAEGKLDSAVKLVESVI 272
           D VVVN   +L+SA   + S++
Sbjct: 180 DKVVVNR--RLESACAELVSLL 199

>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 73  LEASLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP 129
           +  S+G   D+ P     P     ++V+SGPS VGK TV++ LRE   +LHF V+AT+R 
Sbjct: 1   MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRC 60
Query: 130 MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVL 187
            RPGEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++
Sbjct: 61  PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120
Query: 188 RVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV 247
            VD+ GAR +++ + + AV VFLA  S   L  RL+ R  E  + +  R+ TAR E+   
Sbjct: 121 EVDLAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQ 179
Query: 248 KNFDYVVVNAEGKLDSAVKLVESVI 272
            +FD VVVN   +L+SA   + S++
Sbjct: 180 GDFDKVVVNR--RLESACAELVSLL 202

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 5/185 (2%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL  E  DS  F V++T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 5   IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 64
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 65  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 124
Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 125 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 182
Query: 272 IDAEK 276
           I AEK
Sbjct: 183 IFAEK 187

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 5/185 (2%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL  E  DS  F V++T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 4   IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 64  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123
Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 181
Query: 272 IDAEK 276
           I AEK
Sbjct: 182 IFAEK 186

>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL  E  DS  F V +T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 20  IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 79
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 80  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 139
Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 140 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 197
Query: 272 IDAEK 276
           I AEK
Sbjct: 198 IFAEK 202

>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 112/188 (59%), Gaps = 3/188 (1%)
Query: 93  LIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           +I+V+S PSG GK TV  KL E  ++++   V+ T+R  R GE  GKDY+FV +EEFL++
Sbjct: 28  VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
               E++E+A V+G++ G+P+K + + + KG   +L +D QGA     ++ +  V +F+ 
Sbjct: 88  CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 147
Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L  RL  R+ ++ E +  R+  A  E+ H + +DYV+VN +  ++     + ++
Sbjct: 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 205
Query: 272 IDAEKAKV 279
           + AE+ K 
Sbjct: 206 LRAEQMKT 213

>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii Length = 205

Iteration: 1
 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 106/183 (57%), Gaps = 3/183 (1%)
Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           + +IS PSG GK ++++ L ++   +   ++ T+RP RPG+  G DYFF+ +  F   V 
Sbjct: 9   LFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAXVK 68
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
           +   LE+A +Y  + G  K  +   +  G D++L +D QGAR +R +    A+ +F+   
Sbjct: 69  EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFP-PALSIFILPP 127
Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID 273
           S  AL ERL++R+ ++   +  R+A AREE  H K FDY+VVN     D AV+ +  +I 
Sbjct: 128 SIEALRERLIKRRQDDTAIIEQRLALAREEXAHYKEFDYLVVN--DNFDQAVQNLIHIIS 185
Query: 274 AEK 276
           AE+
Sbjct: 186 AER 188

>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 94  IIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           + ++S PSG GK ++I+ L +++        V+ T+R  RPGEV+G+ YFFV+ +EF +M
Sbjct: 6   LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 65
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + ++  LE+A V+G+Y G  ++ I + +A G D+ L +D QGA+ +R+ +   A  +F+ 
Sbjct: 66  ISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKM-PHARSIFIL 124
Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S++ L  RL  R  ++ E +  R+A A  E+ H   +DY++VN +   D+A+  ++++
Sbjct: 125 PPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKTI 182
Query: 272 IDAEKAKV-RQR 282
           I AE+ ++ RQ+
Sbjct: 183 IRAERLRMSRQK 194

>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 111/185 (60%), Gaps = 5/185 (2%)
Query: 94  IIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           + ++S PSG GK ++I+ L +++        V+ T+R  RPGEV+G+ YFFV+ +EF + 
Sbjct: 18  LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEX 77
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           + ++  LE+A V+G+Y G  ++ I + +A G D+ L +D QGA+ +R+     A  +F+ 
Sbjct: 78  ISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKX-PHARSIFIL 136
Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S++ L  RL  R  ++ E +  R A A  E  H   +DY++VN +   D+A+  ++++
Sbjct: 137 PPSKIELDRRLRGRGQDSEEVIAKRXAQAVAEXSHYAEYDYLIVNDD--FDTALTDLKTI 194
Query: 272 IDAEK 276
           I AE+
Sbjct: 195 IRAER 199

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 91  NPLIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
            P  +V+SGPSG GK T++KKL +   S+  F V+ T+R  RPGE +GKDY+FV++E   
Sbjct: 3   GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 62
Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
           + +   + +E+A   G+  G  K+ +R   A     VL VD+QG R++++      +++F
Sbjct: 63  RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-DLCPIYIF 121
Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN---FDYVVVNAEGKLDSAVK 266
           +   S   L +RL  R TE  E L  R+A AR +++  K    FD V++N +  LD A  
Sbjct: 122 VQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYA 179
Query: 267 LVESVIDAEKAKVR 280
            ++  +  E  K +
Sbjct: 180 TLKQALSEEIKKAQ 193

>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 93  LIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           L+IV+SGPSGVGK TV + + ++   S  + ++ T+R  R GE +G DY+F S+E F Q 
Sbjct: 9   LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQA 68
Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           +   + LEYA   G+Y G P + + E +A G DI L +++QGA  +R+   +  +F+FL 
Sbjct: 69  IKDGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPE-GIFIFLT 127
Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDY 252
                 L  R++ R TE+ E +  R  TA++E++   ++DY
Sbjct: 128 PPDLSELKNRIIGRGTESXEVVEERXETAKKEIEXXASYDY 168

>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           +VI GPSGVGK T+IKKL  E  +  +F V+ T+R  R  E  G DY+F+ K  F   + 
Sbjct: 26  LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85
Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG-DSAVFVFLAA 212
             + LEY     ++ G  K +  +   +    +  ++I G + L++     +A+++F+  
Sbjct: 86  NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKP 145
Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAE 258
            S   L+ RL+ R TEN+E++  R+     E+      NF+  ++N +
Sbjct: 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD 193

>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 89  PPNPLIIVISGPSGVGKDTVIKK-LRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE 147
           PP    +V+ GPSGVGK T+IKK L E      F ++ T+R  R  E NG DY+FV K++
Sbjct: 13  PP----LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDD 68
Query: 148 FLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG-DSAV 206
           F + + + + LE+     ++ G  K +    + +G   +   +I G + L+        +
Sbjct: 69  FERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGI 128
Query: 207 FVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAE 258
           ++F+   S   L+ RL  R TE  EE+  R      E        F+Y +VN +
Sbjct: 129 YIFVKPPSIDILLGRLKNRNTEKPEEINKRXQELTREXDEADKVGFNYFIVNDD 182

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 95  IVISGPSGVG----KDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
           +V+ G  GVG    K+T+I K     D   + +  T+RP +  E NGK+Y+FVS ++ +Q
Sbjct: 8   LVLLGAHGVGRRHIKNTLITK---HPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 64
Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVF-VF 209
            +  NE LEY        G   + IR+   +G   +L V+ Q  + LR    + A F VF
Sbjct: 65  DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLR--TAEFAPFVVF 122
Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQ--HVKNFDYVVVNAEGKLDSAVKL 267
           +AA +    +         N +E L R+    + +Q  +   FD  ++N E  +D  ++ 
Sbjct: 123 IAAPTITPGL---------NEDESLQRLQKESDILQRTYAHYFDLTIINNE--IDETIRH 171
Query: 268 VESVID 273
           +E  ++
Sbjct: 172 LEEAVE 177

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 95  IVISGPSGVGKDTVIKKLRESRDSLHFV--VTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           +V+ G SGVG+ + IK    S++   FV  V  T+RP R  E +GK+Y F+S EE  + +
Sbjct: 22  LVLIGASGVGR-SHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI 80
Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
             NE LE+    G+  G   + + +   +    +L ++ Q  + +R    + + F+   A
Sbjct: 81  SANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVR--TAELSPFIVFIA 138
Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            ++          +TE  ++L       R +  H   FD  +VN    +D  +K ++   
Sbjct: 139 PTDQGT-------QTEALQQLQKDSEAIRSQYAHY--FDLSLVN--NGVDETLKKLQEAF 187
Query: 273 D 273
           D
Sbjct: 188 D 188

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           ++I GP    KD +   L  E  D     V  T+RP R  EV+G+DY FVS  E ++   
Sbjct: 103 VIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDI 159
Query: 154 KNELLEYALVYGD-YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL-- 210
           +N L   A  Y D   G     +RE   KG   +L V     + L ++     V VF+  
Sbjct: 160 QNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRL-QVAQLYPVAVFIKP 218
Query: 211 -AAESEMALVERLVERKTENREELLVRI 237
            + +S M +  R+ E + +   E  +++
Sbjct: 219 KSVDSVMEMNRRMTEEQAKKTYERAIKM 246

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM-V 152
           I+I GP+   KD     L  E  D     V  T+RP R  E++G+DY FVS  E ++  +
Sbjct: 114 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 170
Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR 198
             ++ +E         G   + +RE   +G   +L V     R L+
Sbjct: 171 QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQ 216

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM-V 152
           I+I GP+   KD     L  E  D     V  T+RP R  E++G+DY FVS  E ++  +
Sbjct: 108 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 164
Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLR 198
             ++ +E         G   + +RE   +G   +L V     R L+
Sbjct: 165 QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQ 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	2e-75
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	2e-75
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	3e-75
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	6e-75
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	9e-75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	2e-73
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	7e-73
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	2e-72
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	6e-71
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	5e-70
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	8e-59
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	2e-58
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	2e-47
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	8e-47
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-24
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	1e-06
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-06
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	4e-06
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	5e-06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	8e-06
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	5e-05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	6e-05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	4e-04
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	4e-04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	9e-04

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score =  228 bits (583), Expect = 2e-75
 Identities = 79/208 (37%), Positives = 118/208 (56%), Gaps = 8/208 (3%)

Query: 76  SLGHAFDSNPVCPPPNP---LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRP 132
           S+G   D+ P           ++V+SGPS VGK TV++ LRE   +LHF V+AT+R  RP
Sbjct: 1   SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 60

Query: 133 GEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIVLRVD 190
           GEV+G DY F+    F Q++D+ ELLE+A ++G     G   + +R   A G  +++ VD
Sbjct: 61  GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 120

Query: 191 IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF 250
           + GAR +++ + + AV VFLA  S   L  RL+ R TE  + +  R+ TAR E+    +F
Sbjct: 121 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179

Query: 251 DYVVVNAEGKLDSAVKLVESVIDAEKAK 278
           D VVVN    L+SA   + S++      
Sbjct: 180 DKVVVNRR--LESACAELVSLLVGTAPG 205

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score =  228 bits (584), Expect = 2e-75
 Identities = 66/196 (33%), Positives = 117/196 (59%), Gaps = 4/196 (2%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
            L+IV+SGPSGVGK TV + + +  ++   + ++ T+R  R GE +G DY+F S+E F Q
Sbjct: 8   GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQ 67

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
            +   ++LEYA   G+Y G P + + E +A G DI L +++QGA  +R+ + +  +F+FL
Sbjct: 68  AIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPE-GIFIFL 126

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
                  L  R++ R TE+ E +  R+ TA++E++ + ++DY VVN    + +AV+ ++ 
Sbjct: 127 TPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDV--VANAVQKIKG 184

Query: 271 VIDAEKAKVRQRSAVI 286
           +++ E  K  +     
Sbjct: 185 IVETEHLKTERVIHRY 200

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score =  227 bits (582), Expect = 3e-75
 Identities = 76/196 (38%), Positives = 126/196 (64%), Gaps = 4/196 (2%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
            L+IV+SGPSGVGK TV K++ E   +   + ++ T+R MR GEV+G DYFF +++ F  
Sbjct: 6   GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA 65

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
           ++  ++ +EYA   G+Y G P + +++ M +G+D+ L ++++GA+ +R+   D A+F+FL
Sbjct: 66  LIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPD-ALFIFL 124

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
           A  S   L ERLV R TE+ E++  RI  AR+EV+ +  +DYVVVN E  ++ A   ++ 
Sbjct: 125 APPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDE--VELAKNRIQC 182

Query: 271 VIDAEKAKVRQRSAVI 286
           +++AE  K  +  A  
Sbjct: 183 IVEAEHLKRERVEAKY 198

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score =  226 bits (580), Expect = 6e-75
 Identities = 66/194 (34%), Positives = 111/194 (57%), Gaps = 3/194 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
            + +IS PSG GK ++++ L ++   +   ++ T+RP RPG+  G DYFF+ +  F  MV
Sbjct: 8   NLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
            +   LE+A +Y  + G  K  +   +  G D++L +D QGAR +R +    A+ +F+  
Sbjct: 68  KEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPP-ALSIFILP 126

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S  AL ERL++R+ ++   +  R+A AREE+ H K FDY+VVN     D AV+ +  +I
Sbjct: 127 PSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDN--FDQAVQNLIHII 184

Query: 273 DAEKAKVRQRSAVI 286
            AE+ +   +   +
Sbjct: 185 SAERLQRDVQEKKL 198

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score =  227 bits (580), Expect = 9e-75
 Identities = 64/195 (32%), Positives = 115/195 (58%), Gaps = 3/195 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           +I+V+S PSG GK TV  KL E  ++++   V+ T+R  R GE  GKDY+FV +EEFL++
Sbjct: 28  VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
               E++E+A V+G++ G+P+K + + + KG   +L +D QGA     ++ +  V +F+ 
Sbjct: 88  CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 147

Query: 212 AESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV 271
             S   L  RL  R+ ++ E +  R+  A  E+ H + +DYV+VN +  ++     + ++
Sbjct: 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 205

Query: 272 IDAEKAKVRQRSAVI 286
           + AE+ K  ++  + 
Sbjct: 206 LRAEQMKTCRQVGLR 220

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score =  222 bits (569), Expect = 2e-73
 Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
           P  +V+SGPSG GK T++KKL +   S+  F V+ T+R  RPGE +GKDY+FV++E   +
Sbjct: 4   PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQR 63

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
            +   + +E+A   G+  G  K+ +R   A     VL VD+QG R++++      +++F+
Sbjct: 64  DIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLC-PIYIFV 122

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVK---NFDYVVVNAEGKLDSAVKL 267
              S   L +RL  R TE  E L  R+A AR +++  K    FD V++N +  LD A   
Sbjct: 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYAT 180

Query: 268 VESVIDAEKAKVRQ 281
           ++  +  E  K + 
Sbjct: 181 LKQALSEEIKKAQG 194

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score =  220 bits (564), Expect = 2e-72
 Identities = 63/196 (32%), Positives = 118/196 (60%), Gaps = 5/196 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
            + ++S PSG GK ++I+ L ++         V+ T+R  RPGEV+G+ YFFV+ +EF +
Sbjct: 17  TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 76

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
           M+ ++  LE+A V+G+Y G  ++ I + +A G D+ L +D QGA+ +R+ +   A  +F+
Sbjct: 77  MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH-ARSIFI 135

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
              S++ L  RL  R  ++ E +  R+A A  E+ H   +DY++VN +   D+A+  +++
Sbjct: 136 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKT 193

Query: 271 VIDAEKAKVRQRSAVI 286
           +I AE+ ++ ++    
Sbjct: 194 IIRAERLRMSRQKQRH 209

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score =  216 bits (553), Expect = 6e-71
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 6/193 (3%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
              +V+ GPSGVGK T+IKK+         F ++ T+R  R  E NG DY+FV K++F +
Sbjct: 12  IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRI-LGDSAVFVF 209
            + + + LE+     ++ G  K +    + +G   +  ++I G + L+        +++F
Sbjct: 72  KLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIF 131

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVK--NFDYVVVNAEGKLDSAVKL 267
           +   S   L+ RL  R TE  EE+  R+     E+       F+Y +VN +  L      
Sbjct: 132 VKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDD--LARTYAE 189

Query: 268 VESVIDAEKAKVR 280
           +   +     ++R
Sbjct: 190 LREYLLGSYPQLR 202

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score =  214 bits (548), Expect = 5e-70
 Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 6/197 (3%)

Query: 91  NPLIIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
           N   +VI GPSGVGK T+IKKL     +  +F V+ T+R  R  E  G DY+F+ K  F 
Sbjct: 22  NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFE 81

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRR-ILGDSAVFV 208
             +   + LEY     ++ G  K +  +   +    +  ++I G + L++     +A+++
Sbjct: 82  DKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYI 141

Query: 209 FLAAESEMALVERLVERKTENREELLVRIATAREEVQ--HVKNFDYVVVNAEGKLDSAVK 266
           F+   S   L+ RL+ R TEN+E++  R+     E+   ++ NF+  ++N +  L    +
Sbjct: 142 FIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD--LTLTYQ 199

Query: 267 LVESVIDAEKAKVRQRS 283
            +++ +      +   +
Sbjct: 200 QLKNYLLNSYIHLNNHT 216

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score =  185 bits (472), Expect = 8e-59
 Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 14/199 (7%)

Query: 79  HAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNG 137
           H               +V+ G SGVG+  +   L     +   + V  T+RP R  E +G
Sbjct: 6   HHSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG 65

Query: 138 KDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTL 197
           K+Y F+S EE  + +  NE LE+    G+  G   + + +   +    +L ++ Q  + +
Sbjct: 66  KEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIV 125

Query: 198 RRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNA 257
           R         VF+A   +    E L + + +          +     Q+   FD  +VN 
Sbjct: 126 RTAELS-PFIVFIAPTDQGTQTEALQQLQKD----------SEAIRSQYAHYFDLSLVNN 174

Query: 258 EGKLDSAVKLVESVIDAEK 276
              +D  +K ++   D   
Sbjct: 175 G--VDETLKKLQEAFDQAC 191

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score =  183 bits (468), Expect = 2e-58
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 95  IVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           +V+ G  GVG+  +   L     D   + +  T+RP +  E NGK+Y+FVS ++ +Q + 
Sbjct: 8   LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDIS 67

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE LEY        G   + IR+   +G   +L V+ Q  + LR     +   VF+AA 
Sbjct: 68  NNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRT-AEFAPFVVFIAAP 126

Query: 214 SEMALVERLVERKTENREELLVRIATARE-EVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
           +        +       E L      +   +  +   FD  ++N E  +D  ++ +E  +
Sbjct: 127 T--------ITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNE--IDETIRHLEEAV 176

Query: 273 D 273
           +
Sbjct: 177 E 177

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  159 bits (404), Expect = 2e-47
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 10/193 (5%)

Query: 88  PPPNPLIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVS-K 145
                  ++I GP    KD +   L  E  D     V  T+RP R  EV+G+DY FVS +
Sbjct: 96  SINYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 152

Query: 146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSA 205
           E+  + +  +  +E      +  G     +RE   KG   +L V     + L+       
Sbjct: 153 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLY-P 211

Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
           V VF+  +S  +++E       E  ++   R     +E      F  VV      ++   
Sbjct: 212 VAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGE--YFTGVVQGDT--IEEIY 267

Query: 266 KLVESVIDAEKAK 278
             V+S+I ++   
Sbjct: 268 SKVKSMIWSQSGP 280

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  157 bits (399), Expect = 8e-47
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 88  PPPNPLIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVS-K 145
                  I+I GP+   KD     L  E  D     V  T+RP R  E++G+DY FVS +
Sbjct: 101 EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSR 157

Query: 146 EEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSA 205
           E+  + +  ++ +E         G   + +RE   +G   +L V     R L+       
Sbjct: 158 EKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA-AHLHP 216

Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATA-REEVQHVKNFDYVVVNAEGKLDSA 264
           + +F+   S   ++E     K    E+       A + E +  + F  +V       +  
Sbjct: 217 IAIFIRPRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDS--FEEI 271

Query: 265 VKLVESVIDAEKAK 278
              V+ VI+     
Sbjct: 272 YHKVKRVIEDLSGP 285

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  102 bits (254), Expect = 2e-24
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 14/192 (7%)

Query: 87  CPPPNPLIIVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFFVS- 144
                P+II+     G  KD     L  E  D     V  T+RP R  E++G+DY FVS 
Sbjct: 528 VHYARPIIIL-----GPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 582

Query: 145 KEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDS 204
           +E+  + +  ++ +E         G   + +RE   +G   +L V     R L+      
Sbjct: 583 REKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA-AHLH 641

Query: 205 AVFVFLAAESEMALVERLVERKTENREELLVRIATARE-EVQHVKNFDYVVVNAEGKLDS 263
            + +F+   S   ++E     K    E+       A + E +  + F  +V       + 
Sbjct: 642 PIAIFIRPRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDS--FEE 696

Query: 264 AVKLVESVIDAE 275
               V+ VI+  
Sbjct: 697 IYHKVKRVIEDL 708

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 67.2 bits (163), Expect = 5e-13
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 20/230 (8%)

Query: 53  NIRMNHTQAAPVNKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVG---KDTVI 109
           N+R+ H Q A   K+               + P    P+   +V+ GPS  G    D + 
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQ 162

Query: 110 KKLRESRDSLHFVVT-ATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK 168
           K L        F    + +R      +        +K   L    K+ ++E +       
Sbjct: 163 KALF-DFLKHRFEGRISITRVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLA 213

Query: 169 --GIPKKQIREYMAKGYDIVLRVD-IQGARTLRRILGDSAVFVFLAAESEMALVERLVER 225
                 ++I E       +VL  D I     L +    + + V++   S   L   +  R
Sbjct: 214 EVQSEIERIFELARTLQLVVLDADTINHPAQLSK-TSLAPIVVYVKISSPKVLQRLIKSR 272

Query: 226 KTENREELLVRIATAREEVQ-HVKNFDYVVVNAEGKLDSAVKLVESVIDA 274
                + L V++  A +  Q   + FD ++   +  L+ A + +   ++A
Sbjct: 273 GKSQAKHLNVQMVAADKLAQCPPELFDVILDENQ--LEDACEHLADYLEA 320

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 57/355 (16%), Positives = 117/355 (32%), Gaps = 116/355 (32%)

Query: 4   RLSTSFSLYII--SKPKS---PF---ALQRN------PIKSEKQ-----YQRFHYSLS-L 43
            +S +  L+    SK +     F    L+ N      PIK+E++      + +      L
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 44  TPTPLVFSSNIRMNHTQAAPVNKI-ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSG 102
                VF+   + N ++  P  K+ + L  L                P    ++I G  G
Sbjct: 120 YNDNQVFA---KYNVSRLQPYLKLRQALLELR---------------PAK-NVLIDGVLG 160

Query: 103 VGKDT-VIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS------KEEFLQM---- 151
            GK    +      +                 ++     F+++       E  L+M    
Sbjct: 161 SGKTWVALDVCLSYKVQCKM----------DFKI-----FWLNLKNCNSPETVLEMLQKL 205

Query: 152 ---VDKN--ELLEYALVYGDYKGIPKKQIREYMA-KGYD---IVLRVDIQGARTLR---- 198
              +D N     +++          + ++R  +  K Y+   +VL  ++Q A+       
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNL 264

Query: 199 --RIL---GDSAVFVFLAA--ESEMALVER---LVERKTEN-------------REE--- 232
             +IL       V  FL+A   + ++L      L   + ++               E   
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 233 ---LLVRI--ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR 282
                + I   + R+ +    N+ +V  +   KL + ++   S+   E A+ R+ 
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCD---KLTTIIES--SLNVLEPAEYRKM 374

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           + +I+GP+GVGK T  K+L    D+  ++       M    V G        +E L +  
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM----VVGGYRPPWESDELLALTW 59

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL------RVDIQGARTLRRILGDSAVF 207
           KN                      ++    D+VL            A+T++  + D  + 
Sbjct: 60  KNIT---------------DLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIR 104

Query: 208 VFLAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVK 266
             +   +   L+ R   R K E   E  + +    E     +   Y    +  +  +   
Sbjct: 105 FIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDE--RYFYNTSHLQPTNLND 162

Query: 267 LVESVIDAEKAKV 279
           +V+++    +   
Sbjct: 163 IVKNLKTNPRFIF 175

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 16/130 (12%), Positives = 43/130 (33%), Gaps = 1/130 (0%)

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
             + K+E  +          I    I++ + +    +L V       L        + VF
Sbjct: 249 YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNY-AQWYPIVVF 307

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE 269
           L  +S+  +    +    E+R+        + +  ++  +     +N     D     ++
Sbjct: 308 LNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALK 367

Query: 270 SVIDAEKAKV 279
             I  ++ ++
Sbjct: 368 EAIQQQQNQL 377

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 165 GDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVE 224
              K I    +R    K    +L V       L  +     + VF   ES  AL      
Sbjct: 181 SPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYV-QYYPIVVFFIPESRPALKALRQW 239

Query: 225 RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV 279
               +R       A A++  +H  +     +   G  D+  + ++++I  ++ + 
Sbjct: 240 LAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRP 294

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 36/193 (18%)

Query: 94  IIVISGPSGVGKDTVIKKLRESR-------DSLHFVVTATSRPMRPGEVNGKDYFFVSKE 146
           +I++ GP    K TV  KL +          S               +   +  F    E
Sbjct: 3   LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE-----------LAKSGNEKLF----E 47

Query: 147 EFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAV 206
            F ++ D++ ++    VY +     K        K Y I+     +  R +   +   A 
Sbjct: 48  HFNKLADEDNVIIDRFVYSNLVYAKK-------FKDYSILTE---RQLRFIEDKIKAKAK 97

Query: 207 FVFLAAESEMALVERLVERKTEN-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
            V+L A+  + + +RL  R  E    + +  I     EV           +      S+ 
Sbjct: 98  VVYLHADPSV-IKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQW--SSD 154

Query: 266 KLVESVIDAEKAK 278
           ++ + +I   + +
Sbjct: 155 EIAKDIIFLVELE 167

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 3/131 (2%)

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
             + K+E  +          I    I++ + +    +L V       L        + VF
Sbjct: 257 YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNY-AQWYPIVVF 315

Query: 210 LAAESEMALVERLVERKTENREELLVRIATARE-EVQHVKNFDYVVVNAEGKLDSAVKLV 268
           L  +S+  +    +    E+R+        + +    +   F   +       D     +
Sbjct: 316 LNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINL-NSMNDGWYGAL 374

Query: 269 ESVIDAEKAKV 279
           +  I  ++ ++
Sbjct: 375 KEAIQQQQNQL 385

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} Length = 202

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 38/214 (17%)

Query: 88  PPPNP--LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK 145
           P      L+++ SG    GKD V + L+    +    V   S P+              K
Sbjct: 5   PLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL--------------K 50

Query: 146 EEFLQM--VDKNELLEYALVYGDYKGIPKKQ----IREYMAKGYDIVLRVDIQGARTLRR 199
           E++ Q   ++   LL+       YK   +K       E          R  ++G      
Sbjct: 51  EQYAQEHGLNFQRLLD----TSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIW 106

Query: 200 ILGD----SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ------HVKN 249
           ++ D    S +  F  A   +    R V    ++R++         ++ +      +  +
Sbjct: 107 LVSDTRRVSDIQWFREAYGAVTQTVR-VVALEQSRQQRGWVFTPGVDDAESECGLDNFGD 165

Query: 250 FDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQRS 283
           FD+V+ N  G      + +E++I+  +++++   
Sbjct: 166 FDWVIEN-HGVEQRLEEQLENLIEFIRSRLKLHH 198

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 25/163 (15%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           P +I+++G    GK T+ + L      L   +      +              KE     
Sbjct: 5   PALIIVTGHPATGKTTLSQALAT---GLRLPL------LSKDAF---------KEVMFDG 46

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL------RVDIQGARTLRRILGDSA 205
           +  ++      V      +        +  G  +++       +D +  + L  I   + 
Sbjct: 47  LGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTP 106

Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK 248
           + +   A  ++ LVER++ R  +           +  +++ V+
Sbjct: 107 IQIRCVASGDV-LVERILSRIAQGARHPGHCDDRSPADLELVR 148

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 35/195 (17%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
            +I+I+G  G GK    K L+E        V   S  +R             K   ++  
Sbjct: 2   KVILITGMPGSGKSEFAKLLKE----RGAKVIVMSDVVR-------------KRYSIEAK 44

Query: 153 DKNELLEYALVYGDYKG---IPKKQIREYMAKGYDIVLRVDIQG---ARTLRRILGDSAV 206
               L+++A    +  G   + +  + E     +D+V+   ++        +R+LGDS  
Sbjct: 45  PGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVY 104

Query: 207 FVFLAAESEMALVERLVERK----TENREELLVRIATAREEVQHV----KNFDYVVVNAE 258
            V + +  ++   +R++ER     ++   EL+ R     E    +       DY++ N +
Sbjct: 105 IVAVHSPPKI-RYKRMIERLRSDDSKEISELIRRD--REELKLGIGEVIAMADYIITN-D 160

Query: 259 GKLDSAVKLVESVID 273
              +   +  E V D
Sbjct: 161 SNYEEFKRRCEEVTD 175

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 34/194 (17%)

Query: 88  PPPNPLIIVISGPSGVGKDTVIKKL-----RESRDSLHFVVTATSRPMRPGEVNGKDYFF 142
              +  I V+ G SG GK  V  ++         D            M  GE        
Sbjct: 4   TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP----LND 59

Query: 143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVL--RVDIQGARTLRRI 200
             ++ +LQ +                                 ++      +  R L R 
Sbjct: 60  DDRKPWLQAL-------------------NDAAFAMQRTNKVSLIVCSALKKHYRDLLRE 100

Query: 201 LGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK 260
              +  F++L  + ++    RL  RK    +  ++       +       D +VV+ +  
Sbjct: 101 GNPNLSFIYLKGDFDVIE-SRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQP 159

Query: 261 LDSAVKLVESVIDA 274
           L+    +V S I+ 
Sbjct: 160 LE---GVVASTIEV 170

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 90  PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
               I+++SG  G GK T+ + L            +    +     +G+       + +L
Sbjct: 7   LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD--LWGYIKHGRI------DPWL 58

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRI--LGDSAVF 207
               +   +   +               Y  +GY ++L   +     L     L     +
Sbjct: 59  PQSHQQNRMIMQIAA--------DVAGRYAKEGYFVILD-GVVRPDWLPAFTALARPLHY 109

Query: 208 VFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKL 267
           + L   +    +ER ++R   +     + +A    +   +  F++ V+   GK     + 
Sbjct: 110 IVLRTTAA-EAIERCLDR-GGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGK--DTDQA 165

Query: 268 VESVIDA 274
           ++S I+A
Sbjct: 166 LQSAINA 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.98
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.95
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.95
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.94
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.93
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.93
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.93
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.92
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.89
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.89
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	99.89
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.88
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.88
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.88
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.87
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.85
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.85
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.85
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.84
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.84
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.84
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.84
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.84
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.84
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.84
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.83
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.83
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.83
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.83
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.83
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.82
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.82
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.82
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.82
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.82
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.81
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.81
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.81
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.81
1g6h_A	257	High-affinity branched-chain amino acid transport	99.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.81
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.81
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.81
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.8
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.8
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.8
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.79
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.79
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.78
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.78
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.78
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.76
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.76
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.75
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.75
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.74
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.72
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.71
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.69
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.61
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.58
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.57
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.57
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.55
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.55
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.54
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.53
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.53
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.49
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.45
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.45
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.44
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.44
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.41
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.41
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.4
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.38
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.38
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.36
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.35
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.33
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.33
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.32
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.32
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.32
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.31
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.31
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.3
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.3
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.3
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.29
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.28
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.26
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.26
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.25
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.25
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.25
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.23
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.23
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.23
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.23
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.22
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.21
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.2
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.2
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.2
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.19
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.18
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.18
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.17
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.16
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.15
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.15
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.15
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.15
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.12
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.12
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.11
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.1
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.1
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.1
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.1
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.09
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.08
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.06
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.06
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.05
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.04
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.04
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.03
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.03
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.03
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.02
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.01
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.01
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.01
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.0
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.0
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.0
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.98
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.94
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.94
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.94
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.94
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.92
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.92
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.91
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.91
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.91
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.9
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.9
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.9
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.9
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.89
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.89
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.89
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.87
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.87
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.86
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.86
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.83
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.82
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.82
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.78
2og2_A	359	Putative signal recognition particle receptor; nuc	98.74
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.74
1via_A	175	Shikimate kinase; structural genomics, transferase	98.74
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.73
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.73
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.71
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.7
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.68
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.67
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.64
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.6
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.59
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.59
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.55
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.54
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.52
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.51
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.5
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.48
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.45
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.44
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.4
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.38
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.36
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.33
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.32
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.3
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.27
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.26
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.25
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.24
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.23
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.21
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.19
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.19
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.19
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.19
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.16
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.12
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.12
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.12
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.11
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.09
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.02
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.01
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.01
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.01
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.0
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.0
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.0
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.99
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.99
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.98
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.96
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.93
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.87
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.86
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.86
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.85
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.83
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.82
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.81
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.8
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.8
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.79
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.76
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.75
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.73
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.73
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.66
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.64
3ice_A	422	Transcription termination factor RHO; transcriptio	97.64
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.64
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.63
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.63
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.62
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.62
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.61
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.6
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.6
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.56
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.54
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.51
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.5
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.49
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.47
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.46
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.45
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.45
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.44
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.4
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.33
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.28
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.27
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.22
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.16
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.16
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.1
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.1
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.09
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.09
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.08
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.03
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.03
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.01
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.99
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.98
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.98
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.97
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.97
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.96
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.95
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.94
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.89
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.85
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.85
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.83
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.82
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.71
3bos_A	242	Putative DNA replication factor; P-loop containing	96.71
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.7
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.7
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.68
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.65
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.64
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.63
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.63
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.61
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.59
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.58
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.58
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.53
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.51
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.5
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.5
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.5
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.48
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.48
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.47
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.46
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.46
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.45
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.45
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.45
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.45
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.44
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.44
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.44
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.43
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.42
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.42
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.4
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.4
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.4
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.38
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.38
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.38
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.38
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.37
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.37
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.36
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.36
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.35
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.35
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.34
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.33
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.33
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.32
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.31
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.31
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.3
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.29
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.29
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.27
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.27
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.27
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.27
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.27
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.27
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.26
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.26
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.25
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.25
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.25
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.25
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.25
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.22
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.21
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	96.21
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.21
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.2
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.18
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.18
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.18
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.17
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.17
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.17
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.15
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.14
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.14
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.14
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.13
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.13
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.13
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.13
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.12
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	96.12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.12
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.12
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.11
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.1
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.1
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.08
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.07
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.06
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.05
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.04
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.04
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.04
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.04
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.03
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.03
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.03
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.03
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.03
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.03
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.01
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.01
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.01
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.01
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.0
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.99
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.99
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.99
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.98
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.98
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.97
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.94
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.93
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.92
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.92
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.91
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.9
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.89
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.89
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.87
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.87
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.84
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.83
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	95.83
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.82
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.8
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.8
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.8
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.79
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.79
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.79
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.79
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.78
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.78
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.78
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.77
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.77
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.76
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.75
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.75
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.73
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.73
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.72
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.72
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.72
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.71
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	95.7
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.7
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.69
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.69
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.68
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.67
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.63
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.62
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.61
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.61
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	95.6
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.58
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.57
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.56
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.56
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.55
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.54

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.98  E-value=2.2e-31  Score=216.41  Aligned_cols=179  Identities=40%  Similarity=0.592  Sum_probs=163.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      .|+|+||||||||||++.|...++ .+.+++++|||+|+.|+.+|.+|+|++.++|..++.++.|+++..+++++||++.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            389999999999999999987765 5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc--CCC
Q 043263          173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV--KNF  250 (286)
Q Consensus       173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~--~~~  250 (286)
                      +.+...+.+|..++++++.|.+..++..+....++||+.+|+.+.+.+||..|+..+.+.|..|+..+..+....  ..+
T Consensus        83 ~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~f  162 (186)
T 1ex7_A           83 ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAH  162 (186)
T ss_dssp             HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCC
Confidence            999999999999999999999988887765568889999999999999999999889999999999887776533  468


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHH
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      |.||+|++  +++++++|.++|.+
T Consensus       163 D~vIvNdd--le~a~~~l~~iI~a  184 (186)
T 1ex7_A          163 DKVIVNDD--LDKAYKELKDFIFA  184 (186)
T ss_dssp             SEEEECSS--HHHHHHHHHHHHTT
T ss_pred             cEEEECcC--HHHHHHHHHHHHHh
Confidence            99999886  99999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.95  E-value=3.8e-27  Score=195.78  Aligned_cols=189  Identities=35%  Similarity=0.632  Sum_probs=163.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|.+++|+|||||||||++++|++.++. +.+.+.+++|+|..|+.+|.++++++...+..++.++.|+++..++++.|+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            4999999999999999999999999875 889999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      .+.+.+.+.+..|..++++++.+....++..+ ....+||+.+++.+.+.+||.+|+..+.+.+..|+..+..+......
T Consensus        87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~-~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~  165 (208)
T 3tau_A           87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAM-PEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMAS  165 (208)
T ss_dssp             EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHC-TTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGGG
T ss_pred             CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhC-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999988887776 34577888888888999999999877888999999998887777788


Q ss_pred             CcEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263          250 FDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR  282 (286)
Q Consensus       250 ~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~  282 (286)
                      +|.+|+|++  +++++++|.+++...+.+..|.
T Consensus       166 ~d~vivN~~--~~~~~~~l~~~i~~~~~~~~~~  196 (208)
T 3tau_A          166 YDYAVVNDV--VANAVQKIKGIVETEHLKTERV  196 (208)
T ss_dssp             SSEEEECSS--HHHHHHHHHHHHHHHHTBHHHH
T ss_pred             CCEEEECcC--HHHHHHHHHHHHHHHHHhhhhh
Confidence            999999875  9999999999999987766553

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.94  E-value=5.3e-26  Score=185.95  Aligned_cols=173  Identities=26%  Similarity=0.396  Sum_probs=144.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|++++|+||||||||||+++|.+.++ .+.+++.++||+|+.|+++|.+|.+++.+.|..++.++.|+++..++++.|+
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG   97 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG   97 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence            499999999999999999999999887 5889999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      ++.+.+++++..|..++++++.|.+..++... ..+++||+.||+.+        +..++...+..|+....  ......
T Consensus        98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~-~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~~~~~--~~~~~~  166 (197)
T 3ney_A           98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAE-LSPFIVFIAPTDQG--------TQTEALQQLQKDSEAIR--SQYAHY  166 (197)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTT-TCEEEEEEEECCBS--------SCCHHHHHHHHHHHHHH--HHHGGG
T ss_pred             cchhhHHHHHhcCCeEEEEECHHHHHHHHhcC-CCceEEEEeCCCcc--------ccchHHHHHHHHHHHHH--HhhccC
Confidence            99999999999999999999999988887654 34688999999853        11112233444443321  112467


Q ss_pred             CcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          250 FDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       250 ~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      +|.||+|++  +++++++|..++..+.
T Consensus       167 fd~vivNd~--l~~a~~~l~~ii~~~~  191 (197)
T 3ney_A          167 FDLSLVNNG--VDETLKKLQEAFDQAC  191 (197)
T ss_dssp             CSEEEEESC--HHHHHHHHHHHHHHCC
T ss_pred             CCEEEECCC--HHHHHHHHHHHHHHcc
Confidence            999999886  9999999999997754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.93  E-value=1.8e-24  Score=180.69  Aligned_cols=188  Identities=34%  Similarity=0.636  Sum_probs=165.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC--cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      +|++++|+||||||||||+++|+++++  .+.+.+.+++|+++.++.+|.+|.+.+...|..+...+.|.++..++++.|
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            599999999999999999999999987  378899999999888888899999999999988888888888888888888


Q ss_pred             CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263          169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                      +.+.+.+.+++..|..++++++.+....++..+. ....|++.+++.+.+.+||..|+..+.+.+..|+..+..+.....
T Consensus        95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~  173 (219)
T 1s96_A           95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP-HARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYA  173 (219)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT-TCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGG
T ss_pred             CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc-CCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence            8888888999999999999999999988888875 467788888889999999988887789999999998877776667


Q ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHHHHhcccc
Q 043263          249 NFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQ  281 (286)
Q Consensus       249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~  281 (286)
                      .+|.+|+|++  ++++++++.+++...+.+..+
T Consensus       174 ~~d~~i~Nd~--l~~a~~~l~~ii~~~~~~~~~  204 (219)
T 1s96_A          174 EYDYLIVNDD--FDTALTDLKTIIRAERLRMSR  204 (219)
T ss_dssp             GSSEEEECSS--HHHHHHHHHHHHHHHHTBHHH
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHHHHHhhhHh
Confidence            8999998864  999999999999887766554

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.93  E-value=1.2e-24  Score=179.75  Aligned_cols=189  Identities=35%  Similarity=0.615  Sum_probs=161.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|++++|+|||||||||++++|+++++.+.+...++++.+..+...|..+.+.+...+..+...+.+.++..++++.|+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            49999999999999999999999998766777777788887777788889999988888887777777777788888888


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF  250 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~  250 (286)
                      ..+.+.+.+..+..++++++.+.+..++..+ ....+|++++++.+.+.+|+.+|+..+.+.+..|+..+..+.++...+
T Consensus        86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~-~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~  164 (205)
T 3tr0_A           86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELF-PPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEF  164 (205)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHHHHC-TTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGC
T ss_pred             hHHHHHHHHHcCCeEEEEECHHHHHHHHHhC-CCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCC
Confidence            8888899999999999999998888887776 445778888888999999999998778888899999998888777889


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR  282 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~  282 (286)
                      |.||+|+  +++++++++.+++...+.+..++
T Consensus       165 d~vi~n~--~~~~~~~~l~~~i~~~~~~~~~~  194 (205)
T 3tr0_A          165 DYLVVND--NFDQAVQNLIHIISAERLQRDVQ  194 (205)
T ss_dssp             SEEEECS--SHHHHHHHHHHHHHHHTTSHHHH
T ss_pred             CEEEECC--CHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999876  69999999999999876665544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.93  E-value=3e-24  Score=176.92  Aligned_cols=184  Identities=35%  Similarity=0.567  Sum_probs=155.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|++++|+||||||||||+++|.++++ .++..+.+++|.|+.|+++|.++.+.+.+.++.++.++.++++..+.+++|+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence            488999999999999999999999876 5778888999999999999999999999999999888889998888999999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc--
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV--  247 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~--  247 (286)
                      .+.+.+.+++..+..++.+...+.+...+.. ...+.++||++|+...+.+|+..++..+...|..++..+..+....  
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~  161 (198)
T 1lvg_A           83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-DLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKE  161 (198)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHTTS-SCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGS
T ss_pred             CCHHHHHHHHHcCCcEEEECCHHHHHHHHhc-CCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8888899999888888888877666544322 1245668899999999999999998889999999988877665434  


Q ss_pred             -CCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          248 -KNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       248 -~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                       ..+|+|++|++  +++++++|.+++.....
T Consensus       162 ~~~~D~iivnd~--le~a~~~l~~ii~~~~~  190 (198)
T 1lvg_A          162 PGLFDLVIINDD--LDKAYATLKQALSEEIK  190 (198)
T ss_dssp             TTTCSEEEECSS--HHHHHHHHHHHTHHHHH
T ss_pred             cCCceEEEECCC--HHHHHHHHHHHHHHHhh
Confidence             68999999885  99999999999987653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.93  E-value=4.9e-24  Score=176.35  Aligned_cols=184  Identities=28%  Similarity=0.464  Sum_probs=156.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|.+++|+|||||||||+++.|+..++. +.+.+.+++|++..|+++|.++.+++.+.+...+.++.|++...+.++.|+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG   90 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence            5899999999999999999999988765 888899999999999999999999999999988888888888888888888


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh--c
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD-SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ--H  246 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~-~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~--~  246 (286)
                      ...+.+...+..|..+++++..+.+..++..+.. ..++|||++++.+.+.+|+.+|+..+.+.+..|+.....+..  .
T Consensus        91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~  170 (204)
T 2qor_A           91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEAD  170 (204)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            8888888889999999999988877766665421 358899997779999999999876677888888887765543  4


Q ss_pred             cCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ...+|.+++|+  ++++++++|.+++....
T Consensus       171 ~~~~d~vi~n~--~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          171 KVGFNYFIVND--DLARTYAELREYLLGSY  198 (204)
T ss_dssp             HHTCSEEEECS--SHHHHHHHHHHHHHHHC
T ss_pred             hccCcEEEECc--CHHHHHHHHHHHHHHHh
Confidence            57799988765  69999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.92  E-value=6.1e-25  Score=185.24  Aligned_cols=199  Identities=32%  Similarity=0.586  Sum_probs=144.6

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH-hccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLR-ESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE  159 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~-~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~  159 (286)
                      ..++++.+.+ |++++|+|||||||||++++|+ ++++.+...+.++++.|..|+++|.++.+.+...+..+...+.+.+
T Consensus        17 ~~~~sl~v~~-G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (231)
T 3lnc_A           17 QGPGSMLKSV-GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIE   95 (231)
T ss_dssp             -----CCEEC-CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred             cCCCCcccCC-CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceeh
Confidence            4566777776 9999999999999999999999 9987778888889999999999999999999999988887777777


Q ss_pred             hheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043263          160 YALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIAT  239 (286)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~  239 (286)
                      +..++++.|+...+.+.+.+..+..++++.+.+.....+..+......||+.+++.+.+.+|+.+|+..+.+.+..++..
T Consensus        96 ~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~  175 (231)
T 3lnc_A           96 HAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKG  175 (231)
T ss_dssp             EEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHH
T ss_pred             hhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            77788888877776778888888899999888777766665522346677888789999999999987788889999999


Q ss_pred             HHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263          240 AREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR  282 (286)
Q Consensus       240 ~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~  282 (286)
                      +..+.++...+|.||+|+  +++++.+++.+++...+.+..+.
T Consensus       176 ~~~~~~~~~~~d~vI~n~--~~e~~~~~l~~~i~~~~~~~~~~  216 (231)
T 3lnc_A          176 AAFEISHCEAYDYVIVNE--DIEETADRISNILRAEQMKTCRQ  216 (231)
T ss_dssp             HHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHHHHTBGGGE
T ss_pred             HHHHHhhhcCCeEEEECc--CHHHHHHHHHHHHHHHhhccccC
Confidence            988887778899999977  49999999999999887665543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.91  E-value=3.1e-24  Score=174.11  Aligned_cols=173  Identities=26%  Similarity=0.441  Sum_probs=141.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|++++|+||||||||||+++|.+.++ .+.+.+.+++|+|+.|+++|.++.+++.+.+..++.++.++++..+.++.|+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg   83 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   83 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence            489999999999999999999999876 4778899999999999999999999999999999988999998888899999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--hcc
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV--QHV  247 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~--~~~  247 (286)
                      ...+.+.+++..|..++++++.+.+..++... .....||+++|+.+.+.+|        .+.+ .|+..+..+.  ...
T Consensus        84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~-~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~~~  153 (180)
T 1kgd_A           84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAE-FAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRTYA  153 (180)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTT-TCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHHHG
T ss_pred             ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhC-CCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHhhh
Confidence            98888999999999999999988887776544 3458899999876655444        2334 5666554443  335


Q ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          248 KNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       248 ~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ..+|.+|+|++  ++++++++.++++.+
T Consensus       154 ~~~d~~i~n~~--~~~~~~~l~~~i~~~  179 (180)
T 1kgd_A          154 HYFDLTIINNE--IDETIRHLEEAVELV  179 (180)
T ss_dssp             GGCSEEEECSS--HHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECcC--HHHHHHHHHHHHHHh
Confidence            78999998874  999999999998763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.89  E-value=2.7e-26  Score=234.98  Aligned_cols=179  Identities=19%  Similarity=0.273  Sum_probs=146.1

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      ...|+++||+|+|+.     +|+++++.+++ |+.|||+|+|||||||++++|.++++            |.+|+  +||
T Consensus      1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~-Ge~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~iDG 1140 (1321)
T 4f4c_A         1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEP-GQTLALVGPSGCGKSTVVALLERFYD------------TLGGEIFIDG 1140 (1321)
T ss_dssp             CCCEEEEEEEECCTTSCSSCSEEEEEEEECT-TCEEEEECSTTSSTTSHHHHHTTSSC------------CSSSEEEETT
T ss_pred             CCeEEEEEEEEeCCCCCCCccccceeEEECC-CCEEEEECCCCChHHHHHHHHhcCcc------------CCCCEEEECC
Confidence            456999999999953     68999999999 99999999999999999999999998            78887  899


Q ss_pred             cceeeeCHHHHHHHh---hccchhhhheeccc------ccCccHHHHHHH------------HhcCCcEEE--------E
Q 043263          138 KDYFFVSKEEFLQMV---DKNELLEYALVYGD------YKGIPKKQIREY------------MAKGYDIVL--------R  188 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~------~~~~~~~~i~~~------------~~~g~~~v~--------~  188 (286)
                      .|+..++.+.++..+   +|+.++.+.++..|      ....+.+++.++            +++|+++.+        +
T Consensus      1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A         1141 SEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp             EETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred             EEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence            999999999998865   66666444444333      123455555554            356777665        5


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+||+++|||++++|+++||      ||+.++..+++.|++. .+.|...|+||+++       +..||+|+|+++|++
T Consensus      1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT-------i~~aD~I~Vld~G~I 1293 (1321)
T 4f4c_A         1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT-------VMNADCIAVVSNGTI 1293 (1321)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST-------TTTCSEEEEESSSSE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH-------HHhCCEEEEEECCEE
Confidence            789999999999999999998      7888888888888764 45588889999999       799999999999987


Q ss_pred             HH
Q 043263          262 DS  263 (286)
Q Consensus       262 ~~  263 (286)
                      .|
T Consensus      1294 vE 1295 (1321)
T 4f4c_A         1294 IE 1295 (1321)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.89  E-value=9.8e-23  Score=177.21  Aligned_cols=180  Identities=23%  Similarity=0.325  Sum_probs=155.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchhhhheecccc
Q 043263           90 PNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELLEYALVYGDY  167 (286)
Q Consensus        90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~  167 (286)
                      ..|..|+|+||   ||+||++.|...++ .+.+++++|||+|+.|+.+|.+|+|+ +.++|..++.++.|+++..++++.
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~  179 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL  179 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence            34788999999   79999999988776 68899999999999999999999999 999999999999999999999999


Q ss_pred             cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHhhc
Q 043263          168 KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR-EEVQH  246 (286)
Q Consensus       168 ~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~-~~~~~  246 (286)
                      ||++.+.+++.+.+|..++++++.|.+..++..- ..+++||+.+|+.+.+.+ |..|+  +.+.+..|+..+. .+...
T Consensus       180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~-~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~~a~~~e~~~  255 (295)
T 1kjw_A          180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF  255 (295)
T ss_dssp             EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTT-CCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcc-cCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998887666532 335999999999999876 76664  5677888888874 35555


Q ss_pred             cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      ...+|.+|+|+  ++++++++|.++|...+.+
T Consensus       256 ~~~fd~vivNd--~le~a~~~l~~ii~~~~~~  285 (295)
T 1kjw_A          256 TECFSAIVEGD--SFEEIYHKVKRVIEDLSGP  285 (295)
T ss_dssp             GGGCSEEECCS--SHHHHHHHHHHHHHHHSCS
T ss_pred             cccCeEEEECc--CHHHHHHHHHHHHHhccCC
Confidence            67899998876  4999999999999887543

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=99.89  E-value=8.5e-23  Score=176.78  Aligned_cols=180  Identities=24%  Similarity=0.289  Sum_probs=155.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchhhhheeccccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      .+..|+|+||   ||+|+.+.|...++ .+.+++++|||+|+.|+++|.+|+|+ +.+.|..++.++.|+++..+++++|
T Consensus        99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~Y  175 (292)
T 3tvt_A           99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLY  175 (292)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcccee
Confidence            4677999999   49999999987776 58999999999999999999999998 8889999999999999999999999


Q ss_pred             CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263          169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                      |++.+.+.+.+.+|..++++++.|.+..++... ..+++||+.||+.+.+.+|+..++..+...+..|+...  +.+...
T Consensus       176 GT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~-~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~--e~e~~~  252 (292)
T 3tvt_A          176 GTSVASVREVAEKGKHCILDVSGNAIKRLQVAQ-LYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKM--EQEFGE  252 (292)
T ss_dssp             EEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTT-CCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHH--HHHHTT
T ss_pred             EEehHHHHHHHHcCCcEEEeccchhhhhccccc-ccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHH--HHhhhh
Confidence            999999999999999999999999998887654 56799999999999998888777655556666655443  333357


Q ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          249 NFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      .+|.||+|++  +++++++|.++|..++.+
T Consensus       253 ~fD~vIvNdd--le~a~~~l~~iI~~e~~~  280 (292)
T 3tvt_A          253 YFTGVVQGDT--IEEIYSKVKSMIWSQSGP  280 (292)
T ss_dssp             TCSEEECCSS--HHHHHHHHHHHHHHHTCS
T ss_pred             hCCEEEECcC--HHHHHHHHHHHHHHhhCC
Confidence            8999998876  999999999999988654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.88  E-value=7.4e-26  Score=197.63  Aligned_cols=176  Identities=18%  Similarity=0.268  Sum_probs=129.1

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   +|+++++.+++ |++++|+||||||||||+++|+|++.            |..|+  ++|.++
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~-Ge~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~G~~i  118 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMP-GQTLALVGPSGAGKSTILRLLFRFYD------------ISSGCIRIDGQDI  118 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECT-TCEEEEESSSCHHHHHHHHHHTTSSC------------CSEEEEEETTEET
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcC-CCEEEEECCCCchHHHHHHHHHcCCC------------CCCcEEEECCEEc
Confidence            35899999999953   79999999998 99999999999999999999999997            66666  789888


Q ss_pred             eeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCC--------cEEEEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGY--------DIVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~--------~~v~~~~~q~  193 (286)
                      ...+...++..+   .|...+....+..|+ +   ....+.+.++            ++.|.        ..+++|++||
T Consensus       119 ~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQR  198 (306)
T 3nh6_A          119 SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR  198 (306)
T ss_dssp             TSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHH
T ss_pred             ccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHH
Confidence            777777776643   333332222222221 0   1122222222            22233        3466789999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++||+++.+|+++||      ||+.++..+.+.|.+. .+.|...++|+++..       ..||+|+++++|++
T Consensus       199 vaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-------~~aD~i~vl~~G~i  266 (306)
T 3nh6_A          199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV-------VNADQILVIKDGCI  266 (306)
T ss_dssp             HHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH-------HTCSEEEEEETTEE
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH-------HcCCEEEEEECCEE
Confidence            9999999999999888      7777777777777653 234777889999984       45999999999865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.88  E-value=8.6e-25  Score=223.88  Aligned_cols=177  Identities=19%  Similarity=0.267  Sum_probs=143.9

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      ...|+++||+|.|+.     .|+++++.+++ |++++|+||+||||||++++|.|+++            |.+|+  ++|
T Consensus       413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~-G~~vaivG~sGsGKSTll~ll~~~~~------------~~~G~I~idG  479 (1321)
T 4f4c_A          413 KGDITVENVHFTYPSRPDVPILRGMNLRVNA-GQTVALVGSSGCGKSTIISLLLRYYD------------VLKGKITIDG  479 (1321)
T ss_dssp             CCCEEEEEEEECCSSSTTSCSEEEEEEEECT-TCEEEEEECSSSCHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred             CCcEEEEEeeeeCCCCCCCceeeceEEeecC-CcEEEEEecCCCcHHHHHHHhccccc------------cccCcccCCC
Confidence            346999999999963     68999999998 99999999999999999999999998            66666  899


Q ss_pred             cceeeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCCcEEE--------EeC
Q 043263          138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGYDIVL--------RVD  190 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~~~v~--------~~~  190 (286)
                      .++..++.+.++..+   .|..++.+.++..|+ +   ..+.+++.++            +++|+++.+        +||
T Consensus       480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQ  559 (1321)
T 4f4c_A          480 VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ  559 (1321)
T ss_dssp             EETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred             ccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHH
Confidence            999999999988865   566654444444332 1   2344444433            467777666        579


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++|||++++|+++||      ||+.++..+.+.|.+. .+.|...|+||+++       ++.||+|+++++|++
T Consensus       560 kQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~-------i~~aD~Iivl~~G~i  630 (1321)
T 4f4c_A          560 KQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST-------IRNADLIISCKNGQV  630 (1321)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT-------TTTCSEEEEEETTEE
T ss_pred             HHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH-------HHhCCEEEEeeCCee
Confidence            9999999999999999999      8999988888888763 45588889999998       799999999999976

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.88  E-value=5.5e-21  Score=159.66  Aligned_cols=198  Identities=26%  Similarity=0.412  Sum_probs=144.1

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchh
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELL  158 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~  158 (286)
                      .|+++++.+++ |++++|+||||||||||+++|+++++ .+.+.+..+++.+..+..++.++.+.+...+..+..++.++
T Consensus        12 ~l~~isl~i~~-G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   90 (218)
T 1z6g_A           12 SGLVPRGSMNN-IYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFL   90 (218)
T ss_dssp             ----------C-CCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             cccCCceecCC-CCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchh
Confidence            57777888877 99999999999999999999999884 23334455566666666778899999998888877667777


Q ss_pred             hhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263          159 EYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG-DSAVFVFLAAESEMALVERLVERKTENREELLVRI  237 (286)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~-~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl  237 (286)
                      ++..+.++.|+.....+.+++..+..++++.++......|..+. ..+..+|+++++...+.+++..++..+...+..++
T Consensus        91 ~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l  170 (218)
T 1z6g_A           91 EYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRM  170 (218)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             hhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            77777777777777778888888888777766544433333221 12378889888899999999999888899998888


Q ss_pred             HHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          238 ATAREEVQH--VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       238 ~~~~~~~~~--~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      .....+...  ...||.|+++++  +++++..+.+++.....+..
T Consensus       171 ~~~~~~~~~~h~~~~d~iiv~~~--~~ea~~~~~~ii~~~~~~~~  213 (218)
T 1z6g_A          171 EQLNIELHEANLLNFNLSIINDD--LTLTYQQLKNYLLNSYIHLN  213 (218)
T ss_dssp             HHHHHHHHHHTTSCCSEEEECSS--HHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHhhcccCCCEEEECCC--HHHHHHHHHHHHHHHHHhhh
Confidence            876554332  267999999886  99999999999998766543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.87  E-value=2.2e-21  Score=160.16  Aligned_cols=190  Identities=39%  Similarity=0.693  Sum_probs=125.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhcc-CcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD  166 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  166 (286)
                      +++ |++++|+|||||||||++++|++++ +..+..+.+.++.+..|..++.++.+.+...+..++.++.++++..+.++
T Consensus         3 i~~-g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (207)
T 2j41_A            3 NEK-GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGN   81 (207)
T ss_dssp             -CC-CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCC-CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCe
Confidence            444 9999999999999999999999987 33333556667777666777888888888888888777778777777777


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQH  246 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~  246 (286)
                      .|+...+.+...+..|..+++++..+....++..+ ....++++.+++.+.+.+|+.+|+..+.+.+..++..+..+.+.
T Consensus        82 ~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~  160 (207)
T 2j41_A           82 YYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKF-PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEM  160 (207)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHC-TTSEEEEEECCC---------------------------CGGGG
T ss_pred             ecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhc-CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Confidence            77777778888888888999998776665555554 23466777766788888999988766667788888877665555


Q ss_pred             cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhcccc
Q 043263          247 VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQ  281 (286)
Q Consensus       247 ~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~  281 (286)
                      ...+|.+++++  +++++.++|.+++...+.+.++
T Consensus       161 ~~~~d~vI~n~--~~e~~~~~i~~~l~~~~~~~~~  193 (207)
T 2j41_A          161 MNLYDYVVVND--EVELAKNRIQCIVEAEHLKRER  193 (207)
T ss_dssp             GGGCSEEEECS--SHHHHHHHHHHHHHHHHTBHHH
T ss_pred             cccCCEEEECC--CHHHHHHHHHHHHHHhhcchhh
Confidence            67789887765  6999999999999988766554

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.85  E-value=4.2e-24  Score=189.90  Aligned_cols=176  Identities=20%  Similarity=0.282  Sum_probs=124.1

Q ss_pred             HHHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           67 IELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        67 ~i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      .++++||++.|+.      +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.
T Consensus        24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~-Gei~~IiGpnGaGKSTLlr~i~GL~~------------p~~G~I~i~G~   90 (366)
T 3tui_C           24 MIKLSNITKVFHQGTRTIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLER------------PTEGSVLVDGQ   90 (366)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred             eEEEEeEEEEeCCCCCCeEEEEeeEEEEcC-CCEEEEEcCCCchHHHHHHHHhcCCC------------CCceEEEECCE
Confidence            4889999999963      69999999998 99999999999999999999999987            66666  7888


Q ss_pred             ceeeeCHHHHHHH---h----hccchhhhheeccc------ccCccHHH----HHHHH---------hcCCcEEEEeCHH
Q 043263          139 DYFFVSKEEFLQM---V----DKNELLEYALVYGD------YKGIPKKQ----IREYM---------AKGYDIVLRVDIQ  192 (286)
Q Consensus       139 ~~~~~~~~~~~~~---i----~~~~~~~~~~~~~~------~~~~~~~~----i~~~~---------~~g~~~v~~~~~q  192 (286)
                      ++...+..++...   +    ++..+....++..+      .++...+.    +.+++         ......+++|++|
T Consensus        91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ  170 (366)
T 3tui_C           91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ  170 (366)
T ss_dssp             ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH
T ss_pred             ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence            8876666554322   1    22222222222222      12333222    22222         2223457789999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++||+++.+|+++|+      ||+.+...+.+.|.+   ..+.|...++|+++..      ...||+|+++++|++
T Consensus       171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~------~~~aDrv~vl~~G~i  242 (366)
T 3tui_C          171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV------KRICDCVAVISNGEL  242 (366)
T ss_dssp             HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99999999988887777      666656666665543   3355788889999875      367999999988864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.85  E-value=5.3e-23  Score=195.39  Aligned_cols=175  Identities=21%  Similarity=0.258  Sum_probs=129.7

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|.|+.    +++++++.+++ |++++|+|||||||||++++|+|+++            |++|+  ++|.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~-G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~  406 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQ-GKTVALVGRSGSGKSTIANLFTRFYD------------VDSGSICLDGHD  406 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEECCEE
Confidence            45899999999972    69999999998 99999999999999999999999987            77787  78888


Q ss_pred             eeeeCHHHHHHHh---hccch------hhhheecccccCccHHHHHHHH------------hcCC--------cEEEEeC
Q 043263          140 YFFVSKEEFLQMV---DKNEL------LEYALVYGDYKGIPKKQIREYM------------AKGY--------DIVLRVD  190 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~~~~~~~~i~~~~------------~~g~--------~~v~~~~  190 (286)
                      +...+...++..+   .|+..      .+|.. ++.....+.+++.+++            ++|.        ..+++|+
T Consensus       407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq  485 (582)
T 3b5x_A          407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIA-YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ  485 (582)
T ss_pred             hhhCCHHHHhcCeEEEcCCCccccccHHHHHh-ccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence            7666666555433   33322      22222 2211122333333332            2222        3567889


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++||+++.+|+++|+      ||+.++..+.+.+.+. .+.|...++|+++.       ...||+|+++++|++
T Consensus       486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~-------~~~~d~i~~l~~G~i  556 (582)
T 3b5x_A          486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST-------IEQADEILVVDEGEI  556 (582)
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHhCCEEEEEECCEE
Confidence            9999999999999999988      8888788887777663 34477788999987       357999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.85  E-value=4.8e-24  Score=180.11  Aligned_cols=174  Identities=13%  Similarity=0.171  Sum_probs=118.3

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ++++||++.|+.      +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.+
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~   68 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKE-GEFVSIMGPSGSGKSTMLNIIGCLDK------------PTEGEVYIDNIK   68 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCceEEEECCEE
Confidence            456788999962      68999999998 99999999999999999999999987            66666  67877


Q ss_pred             eeeeCHHHHHH----Hh----hccchhhhheecccc---------cCccH----HHHHHHHh----------cCCcEEEE
Q 043263          140 YFFVSKEEFLQ----MV----DKNELLEYALVYGDY---------KGIPK----KQIREYMA----------KGYDIVLR  188 (286)
Q Consensus       140 ~~~~~~~~~~~----~i----~~~~~~~~~~~~~~~---------~~~~~----~~i~~~~~----------~g~~~v~~  188 (286)
                      +...+......    .+    ++..+.....+..++         .....    +.+.+.+.          .....+++
T Consensus        69 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  148 (235)
T 3tif_A           69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG  148 (235)
T ss_dssp             CTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH
T ss_pred             cccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCH
Confidence            76555544321    11    222222221221111         01221    12222221          12345778


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      |++||+++||+++.+|+++|+      ||+.+...+.+.+.+   ..+.+...++|+++.       ...||+|+++++|
T Consensus       149 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-------~~~~d~i~~l~~G  221 (235)
T 3tif_A          149 GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-------ARFGERIIYLKDG  221 (235)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-------HTTSSEEEEEETT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-------HHhCCEEEEEECC
Confidence            999999999999988887777      666656666665544   224577888998875       4689999999999


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       222 ~i  223 (235)
T 3tif_A          222 EV  223 (235)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.84  E-value=1.5e-23  Score=199.04  Aligned_cols=176  Identities=18%  Similarity=0.220  Sum_probs=131.7

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|.|+.    +|+++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~-Ge~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~i~g~~  406 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKP-GSLVAVLGETGSGKSTLMNLIPRLID------------PERGRVEVDELD  406 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECT-TCEEEEECSSSSSHHHHHHTTTTSSC------------CSEEEEEESSSB
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCcEEEECCEE
Confidence            46899999999953    78999999998 99999999999999999999999997            66666  78999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAKGYDI--------VLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~g~~~--------v~~~~~q  192 (286)
                      +...+...++..+   .|+..+.+.++..|+.    ....+++.++            ++.|.++        +++||+|
T Consensus       407 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ  486 (587)
T 3qf4_A          407 VRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ  486 (587)
T ss_dssp             GGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred             cccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence            8888888777654   3433322222222211    1223333322            1224333        4568999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++||+++.+|+++|+      ||+.++..+.+.+.+. .+.|...++|+++.       ...||+|+++++|++
T Consensus       487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~-------~~~~d~i~vl~~G~i  555 (587)
T 3qf4_A          487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT-------ALLADKILVLHEGKV  555 (587)
T ss_dssp             HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH-------HTTSSEEEEEETTEE
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH-------HHhCCEEEEEECCEE
Confidence            99999999999999888      7777777887777653 34577888999998       468999999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.84  E-value=2.3e-24  Score=185.79  Aligned_cols=176  Identities=17%  Similarity=0.157  Sum_probs=118.7

Q ss_pred             HHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           67 IELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      .++++||++.|+.   +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++.
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~-Ge~~~iiGpnGsGKSTLl~~l~Gl~~------------p~~G~I~~~G~~i~   73 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKR-GEVTAILGGNGVGKSTLFQNFNGILK------------PSSGRILFDNKPID   73 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEET-TSEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECC
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCC------------CCCeEEEECCEECC
Confidence            4788999999964   69999999998 99999999999999999999999987            56665  6787763


Q ss_pred             e--eCHHHHHHHh---hccc--hhhhheeccc------ccCccHH----HHHHHHh---------cCCcEEEEeCHHHHH
Q 043263          142 F--VSKEEFLQMV---DKNE--LLEYALVYGD------YKGIPKK----QIREYMA---------KGYDIVLRVDIQGAR  195 (286)
Q Consensus       142 ~--~~~~~~~~~i---~~~~--~~~~~~~~~~------~~~~~~~----~i~~~~~---------~g~~~v~~~~~q~v~  195 (286)
                      .  .....++..+   .|..  .+....+..+      .++...+    .+.+++.         .....+++|++||++
T Consensus        74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~  153 (275)
T 3gfo_A           74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA  153 (275)
T ss_dssp             CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence            1  1112233222   2211  1111111111      1233322    2233321         222457789999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|++++.+|+++|+      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~------~~~~drv~~l~~G~i  222 (275)
T 3gfo_A          154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV------PLYCDNVFVMKEGRV  222 (275)
T ss_dssp             HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG------GGGCSEEEEEETTEE
T ss_pred             HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99999988888888      7776666666655432   245777889988764      367999999998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.84  E-value=5e-24  Score=183.04  Aligned_cols=176  Identities=17%  Similarity=0.195  Sum_probs=122.5

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~~~~~   77 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIAS-GEMVAIIGPNGAGKSTLLRLLTGYLS------------PSHGECHLLGQNLNS   77 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECCTTSCHHHHHHHHTSSSC------------CSSCEEEETTEETTT
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEECCc
Confidence            4778899999986  79999999998 99999999999999999999999986            77777  78887765


Q ss_pred             eCHHHHHHHh---hc-cch------hhhheecccccC--ccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHh
Q 043263          143 VSKEEFLQMV---DK-NEL------LEYALVYGDYKG--IPKKQIREYMA---------KGYDIVLRVDIQGARTLRRIL  201 (286)
Q Consensus       143 ~~~~~~~~~i---~~-~~~------~~~~~~~~~~~~--~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~  201 (286)
                      .+...++..+   .+ ..+      .++..+....+.  ...+.+.++++         .....+++|++||+++||+++
T Consensus        78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~  157 (266)
T 4g1u_C           78 WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA  157 (266)
T ss_dssp             SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            5655554432   22 111      122111111111  11233333322         223457789999999999999


Q ss_pred             C------CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          202 G------DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       202 ~------~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .      +|+++|+      ||+.+...+.+.|.+   .++.+...++|+++..      ...||+|+++++|++
T Consensus       158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~------~~~~d~v~vl~~G~i  226 (266)
T 4g1u_C          158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA------ALYADRIMLLAQGKL  226 (266)
T ss_dssp             HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred             cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHH------HHhCCEEEEEECCEE
Confidence            7      7777666      666656666665543   2333677789998875      357999999998865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.84  E-value=2.1e-24  Score=192.92  Aligned_cols=175  Identities=17%  Similarity=0.192  Sum_probs=117.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|+++...
T Consensus         4 l~~~~l~~~yg~~~~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~~~~~~   70 (381)
T 3rlf_A            4 VQLQNVTKAWGEVVVSKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEKRMNDT   70 (381)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTC
T ss_pred             EEEEeEEEEECCEEEEeeeEEEECC-CCEEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECCEECCCC
Confidence            678899999986  78999999998 99999999999999999999999987            55555  566654333


Q ss_pred             CHHH--HHHHhhccchhhhheeccc------ccCccHHH----HHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPKKQ----IREYM---------AKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~~----i~~~~---------~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      +...  +....++..+..+..+..|      .++...+.    +.+++         .+....+++|++||+++||+++.
T Consensus        71 ~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~  150 (381)
T 3rlf_A           71 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (381)
T ss_dssp             CGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             CHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence            2211  0001122222222222222      12333322    22222         22334577899999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++|+      ||+.....+.+.|.   +..+.+...++|+++.+      ...||+|+++++|++
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea------~~~aDri~vl~~G~i  212 (381)
T 3rlf_A          151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA------MTLADKIVVLDAGRV  212 (381)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            8887777      56555555555444   33345778889998876      478999999999965

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.84  E-value=3e-24  Score=190.70  Aligned_cols=176  Identities=18%  Similarity=0.240  Sum_probs=116.6

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|+++..
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~~i~~   70 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDP-GEILFIIGASGCGKTTLLRCLAGFEQ------------PDSGEISLSGKTIFS   70 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHHTSSC------------CSEEEEEETTEEEES
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcC-CCEEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCEECcc
Confidence            3678899999986  79999999998 99999999999999999999999987            55555  56665521


Q ss_pred             ----eCHH--HHHHHhhccchhhhheeccc------ccCcc----HHHHHHHH---------hcCCcEEEEeCHHHHHHH
Q 043263          143 ----VSKE--EFLQMVDKNELLEYALVYGD------YKGIP----KKQIREYM---------AKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       143 ----~~~~--~~~~~i~~~~~~~~~~~~~~------~~~~~----~~~i~~~~---------~~g~~~v~~~~~q~v~ia  197 (286)
                          ....  .+....++..+..+..+..|      .++..    .+.+.+++         .+....+++|++||+++|
T Consensus        71 ~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA  150 (359)
T 3fvq_A           71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA  150 (359)
T ss_dssp             SSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             cccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence                1110  00011122222222222222      11221    12233332         223356778999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLV---ERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~---~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++.+|+++|+      ||+.....+.+.+.   +..+.|...++|+++.+      ...||+|+++++|++
T Consensus       151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea------~~~aDri~vl~~G~i  217 (359)
T 3fvq_A          151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA------LQYADRIAVMKQGRI  217 (359)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHHCCEEEEEECCEE
Confidence            999988887777      66655555554333   23345778889998876      468999999999975

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.84  E-value=1.6e-23  Score=199.47  Aligned_cols=176  Identities=18%  Similarity=0.295  Sum_probs=130.5

Q ss_pred             hHHHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           66 KIELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      ..++++||+|.|+.   +|+++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.++
T Consensus       353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~-G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~i  419 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKKKPVLKDITFHIKP-GQKVALVGPTGSGKTTIVNLLMRFYD------------VDRGQILVDGIDI  419 (598)
T ss_dssp             CCEEEEEEECCSSSSSCSCCSEEEECCT-TCEEEEECCTTSSTTHHHHHHTTSSC------------CSEEEEEETTEEG
T ss_pred             CeEEEEEEEEECCCCCccccceEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCcC------------CCCeEEEECCEEh
Confidence            45899999999964   79999999998 99999999999999999999999997            66666  789988


Q ss_pred             eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCc--------EEEEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYD--------IVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~--------~v~~~~~q~  193 (286)
                      ...+...++..+   .|+..+.+..+..|+    ...+.+++.++            ++.|.+        .+++||+||
T Consensus       420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr  499 (598)
T 3qf4_B          420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL  499 (598)
T ss_dssp             GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred             hhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence            877877777654   333322222222221    01222233322            223333        356899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++||+++.+|+++|+      ||+.++..+.+.+.+. .+.|...++|+++..       ..||+|+++++|++
T Consensus       500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-------~~~d~i~~l~~G~i  567 (598)
T 3qf4_B          500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI-------KNADLIIVLRDGEI  567 (598)
T ss_dssp             HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH-------HHCSEEEEECSSSE
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-------HcCCEEEEEECCEE
Confidence            9999999999999888      7777777887777653 345778889999884       56999999998875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.84  E-value=2.1e-23  Score=177.37  Aligned_cols=175  Identities=19%  Similarity=0.245  Sum_probs=120.5

Q ss_pred             HHHhHhHHHHh--cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASL--GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~--~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .|+++||++.|  +.  +|+++++.+++ |++++|+||||||||||+++|+|++.            |.+|+  ++|.++
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~i~g~~~   73 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQ-GEVIGIVGRSGSGKSTLTKLIQRFYI------------PENGQVLIDGHDL   73 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEET
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEh
Confidence            36788999999  33  68999999998 99999999999999999999999987            55665  677766


Q ss_pred             eeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH---------Hhc-----------CCcEEEEeCHHH
Q 043263          141 FFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY---------MAK-----------GYDIVLRVDIQG  193 (286)
Q Consensus       141 ~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~---------~~~-----------g~~~v~~~~~q~  193 (286)
                      ...+...++..+   .+...+....+..++    .....+.+.++         +..           ....+++|++||
T Consensus        74 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qR  153 (247)
T 2ff7_A           74 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR  153 (247)
T ss_dssp             TTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHH
T ss_pred             hhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHH
Confidence            444444444332   222111111222111    01222222222         111           124688899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++||+++.+|+++|+      ||+.+...+.+.|.+. .+.+...++|+++.       ...||+|+++++|++
T Consensus       154 v~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~-------~~~~d~v~~l~~G~i  221 (247)
T 2ff7_A          154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST-------VKNADRIIVMEKGKI  221 (247)
T ss_dssp             HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG-------GTTSSEEEEEETTEE
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH-------HHhCCEEEEEECCEE
Confidence            9999999988888888      7877777777766653 23466777898775       456999999998865

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.83  E-value=1.8e-19  Score=174.68  Aligned_cols=189  Identities=22%  Similarity=0.324  Sum_probs=159.8

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchh
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELL  158 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~  158 (286)
                      +..|....+..+..|+|+||+   |+||++.|...++ .+.+++.+|||+|+.|+.+|.+|+|+ +.++|..++.++.|+
T Consensus       520 Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~fl  596 (721)
T 2xkx_A          520 YETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFI  596 (721)
T ss_pred             ceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCce
Confidence            444544444457899999994   9999999988775 58899999999999999999999999 999999999999999


Q ss_pred             hhheecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHH
Q 043263          159 EYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIA  238 (286)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~  238 (286)
                      ++..+++++||++.+.+++++++|..++++++.+.+..++..- ..+++||+.+++.+.+.+ |..|+  +...+..|+.
T Consensus       597 E~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~-~~p~~ifi~pps~~~L~~-l~~R~--t~~~~~~rl~  672 (721)
T 2xkx_A          597 EAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFD  672 (721)
T ss_pred             EEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcc-cCCEEEEEeCCcHHHHHH-HhccC--CHHHHHHHHH
Confidence            9999999999999999999999999999999998877776432 235999999999988876 77665  5567888888


Q ss_pred             HHHH-HhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          239 TARE-EVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       239 ~~~~-~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      .+.. +..+...+|.+|+|++  +++++++|.++|...+.+
T Consensus       673 ~a~~~e~~~~~~fd~vi~Nd~--l~~a~~~l~~~i~~~~~~  711 (721)
T 2xkx_A          673 RATKLEQEFTECFSAIVEGDS--FEEIYHKVKRVIEDLSGP  711 (721)
T ss_pred             HHHHHHHhccccCcEEEECcC--HHHHHHHHHHHHHhccCC
Confidence            8753 5555678999998875  999999999999876543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.83  E-value=2.3e-23  Score=197.62  Aligned_cols=176  Identities=18%  Similarity=0.224  Sum_probs=129.7

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|.|+.    +|+++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.+
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~-G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~  404 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEK-GETVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILIDGHN  404 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECT-TCEEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEETTEE
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEECCEE
Confidence            45899999999963    68999999998 99999999999999999999999997            66666  78988


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHHH------------hcCCc--------EEEEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREYM------------AKGYD--------IVLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~~------------~~g~~--------~v~~~~~q  192 (286)
                      +...+...++..+   .|+..+.+.++..|+    .....+++.+++            +.|.+        .+++||+|
T Consensus       405 ~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q  484 (578)
T 4a82_A          405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ  484 (578)
T ss_dssp             GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred             hhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence            8777777776654   333332222222221    112233333332            22322        46678999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++||+++.+|+++|+      ||+.++..+.+.+.+. .+.|...++|+++.       ...||+|+++++|++
T Consensus       485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~-------~~~~d~i~~l~~G~i  553 (578)
T 4a82_A          485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST-------ITHADKIVVIENGHI  553 (578)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-------TTTCSEEEEEETTEE
T ss_pred             HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHcCCEEEEEECCEE
Confidence            99999999999999888      7777677777776653 33477778999987       577999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.83  E-value=3.6e-23  Score=176.71  Aligned_cols=175  Identities=12%  Similarity=0.145  Sum_probs=117.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |.+|+  ++|.++..
T Consensus        15 ~l~i~~l~~~y~~~~vl~~vsl~i~~-Gei~~l~G~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~~~~   81 (256)
T 1vpl_A           15 AVVVKDLRKRIGKKEILKGISFEIEE-GEIFGLIGPNGAGKTTTLRIISTLIK------------PSSGIVTVFGKNVVE   81 (256)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEETTT
T ss_pred             eEEEEEEEEEECCEEEEEeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEECCc
Confidence            3788999999975  79999999998 99999999999999999999999987            55555  56655422


Q ss_pred             eCHHHHHHHh----hccch------hhhheecccccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHH
Q 043263          143 VSKEEFLQMV----DKNEL------LEYALVYGDYKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRR  199 (286)
Q Consensus       143 ~~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iara  199 (286)
                       ....++..+    ++..+      .++..+....++...    +.+.+++         ......+++|++||+++|++
T Consensus        82 -~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra  160 (256)
T 1vpl_A           82 -EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA  160 (256)
T ss_dssp             -CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred             -cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence             222222211    11111      122211111122221    1223332         22234577899999999999


Q ss_pred             HhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          200 ILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       200 l~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~------~~~~d~v~~l~~G~i  224 (256)
T 1vpl_A          161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV------EFLCDRIALIHNGTI  224 (256)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH------TTTCSEEEEEETTEE
T ss_pred             HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH------HHHCCEEEEEECCEE
Confidence            9988888877      7776666776666543  244667779988875      467999999998865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.83  E-value=4.4e-23  Score=195.90  Aligned_cols=175  Identities=22%  Similarity=0.266  Sum_probs=129.7

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..++++||+|.|+.    +++++++.+++ |++++|+|||||||||++++|+|+++            |.+|+  ++|.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~-G~~~~ivG~sGsGKSTLl~~l~g~~~------------p~~G~i~~~g~~  406 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPA-GKTVALVGRSGSGKSTIASLITRFYD------------IDEGHILMDGHD  406 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECT-TCEEEEEECTTSSHHHHHHHHTTTTC------------CSEEEEEETTEE
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhhccC------------CCCCeEEECCEE
Confidence            35899999999972    68999999998 99999999999999999999999987            66666  78888


Q ss_pred             eeeeCHHHHHHHh---hccch------hhhheecccccCccHHHHHHHHh------------cC--------CcEEEEeC
Q 043263          140 YFFVSKEEFLQMV---DKNEL------LEYALVYGDYKGIPKKQIREYMA------------KG--------YDIVLRVD  190 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~------~~~~~~~~~~~~~~~~~i~~~~~------------~g--------~~~v~~~~  190 (286)
                      +...+...++..+   .|+..      .++.. ++.....+.+++.++++            +|        ...+++|+
T Consensus       407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq  485 (582)
T 3b60_A          407 LREYTLASLRNQVALVSQNVHLFNDTVANNIA-YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ  485 (582)
T ss_dssp             TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH-TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred             ccccCHHHHHhhCeEEccCCcCCCCCHHHHHh-ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence            7666666666543   33322      22222 22111233444444322            12        23467899


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++||+++.+|+++|+      ||+.++..+.+.+.+. .+.|...++|+++.       ...||+|+++++|++
T Consensus       486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~-------~~~~d~i~~l~~G~i  556 (582)
T 3b60_A          486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST-------IEQADEIVVVEDGII  556 (582)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG-------TTTCSEEEEEETTEE
T ss_pred             HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH-------HHhCCEEEEEECCEE
Confidence            9999999999999999888      8888788887777653 34477788999887       578999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.83  E-value=4e-23  Score=173.28  Aligned_cols=174  Identities=12%  Similarity=0.124  Sum_probs=117.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++|+++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++...
T Consensus         5 l~~~~l~~~y~~~~~l~~vsl~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~   71 (224)
T 2pcj_A            5 LRAENIKKVIRGYEILKGISLSVKK-GEFVSIIGASGSGKSTLLYILGLLDA------------PTEGKVFLEGKEVDYT   71 (224)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEEECTTSCHHHHHHHHTTSSC------------CSEEEEEETTEECCSS
T ss_pred             EEEEeEEEEECCEeeEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCEECCCC
Confidence            678899999975  78999999998 99999999999999999999999987            55665  677766544


Q ss_pred             CHHH---HH-HHh----hccchhhhheeccc------ccCcc----HHHHHHHHh---------cCCcEEEEeCHHHHHH
Q 043263          144 SKEE---FL-QMV----DKNELLEYALVYGD------YKGIP----KKQIREYMA---------KGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~~---~~-~~i----~~~~~~~~~~~~~~------~~~~~----~~~i~~~~~---------~g~~~v~~~~~q~v~i  196 (286)
                      +...   ++ ..+    ++..+..+..+..+      .++..    .+.+.++++         .....+++|++||+++
T Consensus        72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (224)
T 2pcj_A           72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI  151 (224)
T ss_dssp             CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence            4332   22 211    22222111111111      11222    122333322         1223577899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++.       ...||+|+++++|++
T Consensus       152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-------~~~~d~v~~l~~G~i  217 (224)
T 2pcj_A          152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-------AELTHRTLEMKDGKV  217 (224)
T ss_dssp             HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-------HTTSSEEEEEETTEE
T ss_pred             HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-------HHhCCEEEEEECCEE
Confidence            9999988888777      6766666666655542  24467777898765       367999999998864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.82  E-value=5e-23  Score=176.38  Aligned_cols=176  Identities=18%  Similarity=0.192  Sum_probs=118.4

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee-
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF-  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~-  141 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++. 
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~-Gei~~liG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~i~~   90 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIRE-GEVVVVIGPSGSGKSTFLRCLNLLED------------FDEGEIIIDGINLKA   90 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEESSS
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcC-CCEEEEEcCCCCcHHHHHHHHHcCCC------------CCCcEEEECCEECCC
Confidence            4789999999976  79999999998 99999999999999999999999987            55555  5676553 


Q ss_pred             -eeCHHHHHHHh---hc-cch------hhhheecc-cccCccH----HHHHHHHh---------cCCcEEEEeCHHHHHH
Q 043263          142 -FVSKEEFLQMV---DK-NEL------LEYALVYG-DYKGIPK----KQIREYMA---------KGYDIVLRVDIQGART  196 (286)
Q Consensus       142 -~~~~~~~~~~i---~~-~~~------~~~~~~~~-~~~~~~~----~~i~~~~~---------~g~~~v~~~~~q~v~i  196 (286)
                       ......++..+   .| ..+      .++..+.. ..++...    +.+.++++         .....+++|++||+++
T Consensus        91 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~l  170 (263)
T 2olj_A           91 KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAI  170 (263)
T ss_dssp             TTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred             ccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence             11222333222   22 222      12221111 1112221    22333322         2224577899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~------~~~~d~v~~l~~G~i  237 (263)
T 2olj_A          171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA------REVGDRVLFMDGGYI  237 (263)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            9999988888777      6766666666666542  244677779988875      357999999998865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.82  E-value=1.3e-22  Score=182.44  Aligned_cols=176  Identities=13%  Similarity=0.136  Sum_probs=121.3

Q ss_pred             HHHhHhHHHHh--cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceee
Q 043263           67 IELLRSLEASL--GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~--~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~  142 (286)
                      .++++||++.|  +.  +|+++++.+.+ |++++|+||||||||||+++|+|++. ..+.+.          ++|.++..
T Consensus        19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~----------i~G~~i~~   86 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGGNAILENISFSISP-GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ----------IDGVSWDS   86 (390)
T ss_dssp             CEEEEEEEEESSSSSCCSEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE----------ESSCBTTS
T ss_pred             eEEEEEEEEEecCCCeEEeeceeEEEcC-CCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE----------ECCEECCc
Confidence            48899999999  43  79999999998 99999999999999999999999875 444444          67777766


Q ss_pred             eCHHHHHHHh---hccchhhhheeccccc---CccHHHHHHHH---------hcCCcE-----------EEEeCHHHHHH
Q 043263          143 VSKEEFLQMV---DKNELLEYALVYGDYK---GIPKKQIREYM---------AKGYDI-----------VLRVDIQGART  196 (286)
Q Consensus       143 ~~~~~~~~~i---~~~~~~~~~~~~~~~~---~~~~~~i~~~~---------~~g~~~-----------v~~~~~q~v~i  196 (286)
                      .+...++..+   .|...+....+..|+.   ....+.+.+++         ......           +++|++||+++
T Consensus        87 ~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval  166 (390)
T 3gd7_A           87 ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL  166 (390)
T ss_dssp             SCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred             CChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHH
Confidence            6665554432   2322211112222211   12233333332         211122           78899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+++.+|+++||      ||+.....+.+.|.+. .+.+...++|+++.       ...||+|+++++|++
T Consensus       167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~-------~~~aDri~vl~~G~i  231 (390)
T 3gd7_A          167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEA-------MLECDQFLVIEENKV  231 (390)
T ss_dssp             HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGG-------GTTCSEEEEEETTEE
T ss_pred             HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHH-------HHhCCEEEEEECCEE
Confidence            9999988888877      6776666666666653 23466777887654       467999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.82  E-value=9.3e-23  Score=175.67  Aligned_cols=174  Identities=14%  Similarity=0.188  Sum_probs=119.8

Q ss_pred             HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      .++++||++.|+.     +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.+
T Consensus        16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~   82 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYP-GKVTALVGPNGSGKSTVAALLQNLYQ------------PTGGKVLLDGEP   82 (271)
T ss_dssp             CEEEEEEEECCTTCTTSCCEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred             eEEEEEEEEEeCCCCCceeeEeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEECCEE
Confidence            4788999999963     68999999998 99999999999999999999999987            55665  67877


Q ss_pred             eeeeCHHHHHHHh---hcc-ch-----hhhheecccccCccHHHH---------HHHHh-----------cCCcEEEEeC
Q 043263          140 YFFVSKEEFLQMV---DKN-EL-----LEYALVYGDYKGIPKKQI---------REYMA-----------KGYDIVLRVD  190 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~-~~-----~~~~~~~~~~~~~~~~~i---------~~~~~-----------~g~~~v~~~~  190 (286)
                      +...+...++..+   .+. .+     .++..+....+. ..+.+         .+.+.           .....+++|+
T Consensus        83 i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq  161 (271)
T 2ixe_A           83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQ  161 (271)
T ss_dssp             GGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHH
T ss_pred             cccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHH
Confidence            6544444444332   222 11     222211111111 10111         11111           1123467889


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK---TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~---~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++||+++.+|+++|+      ||+.+...+.+.|.+..   +.+...++|+++..       ..||+|+++++|++
T Consensus       162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~-------~~~d~v~~l~~G~i  234 (271)
T 2ixe_A          162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA-------ERAHHILFLKEGSV  234 (271)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH-------TTCSEEEEEETTEE
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH-------HhCCEEEEEECCEE
Confidence            9999999999988888888      77777777777776542   34667779988763       45999999998865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.82  E-value=4.8e-23  Score=174.92  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=114.0

Q ss_pred             HHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++||++.| +.  +|+++++.+++ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   68 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQP-NSIIAFAGPSGGGKSTIFSLLERFYQ------------PTAGEITIDGQPIDN   68 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECT-TEEEEEECCTTSSHHHHHHHHTTSSC------------CSBSCEEETTEESTT
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEhhh
Confidence            4567889999 43  78999999998 99999999999999999999999987            55555  45544321


Q ss_pred             eCHHHHHHH---hhcc------chhhhheecccccCccHHHHHHHHhc--------------------CCcEEEEeCHHH
Q 043263          143 VSKEEFLQM---VDKN------ELLEYALVYGDYKGIPKKQIREYMAK--------------------GYDIVLRVDIQG  193 (286)
Q Consensus       143 ~~~~~~~~~---i~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------g~~~v~~~~~q~  193 (286)
                      .+...++..   +.+.      ...++..+... .....+.+.+++..                    ....+++|++||
T Consensus        69 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr  147 (243)
T 1mv5_A           69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR  147 (243)
T ss_dssp             TSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred             CCHHHHHhhEEEEcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence            111111111   1111      12222222101 11223333333211                    123677899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++||+++.+|+++|+      ||+.+...+.+.|.+. .+.+...++|+++..       ..||+|+++++|++
T Consensus       148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-------~~~d~v~~l~~G~i  215 (243)
T 1mv5_A          148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-------VDADKIYFIEKGQI  215 (243)
T ss_dssp             HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHH-------HHCSEEEEEETTEE
T ss_pred             HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-------HhCCEEEEEECCEE
Confidence            9999999989988888      7887777777776653 234667779988763       45999999988865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.82  E-value=6.1e-23  Score=173.92  Aligned_cols=176  Identities=16%  Similarity=0.162  Sum_probs=118.5

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+++ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~   72 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPR-GQIVTLIGANGAGKTTTLSAIAGLVR------------AQKGKIIFNGQDITN   72 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECTT
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCEECCC
Confidence            3678899999976  78999999998 99999999999999999999999987            55555  66766543


Q ss_pred             eCHHHHHHH-h---hcc-ch------hhhheeccccc-Ccc--HHHHHHH------H----hcCCcEEEEeCHHHHHHHH
Q 043263          143 VSKEEFLQM-V---DKN-EL------LEYALVYGDYK-GIP--KKQIREY------M----AKGYDIVLRVDIQGARTLR  198 (286)
Q Consensus       143 ~~~~~~~~~-i---~~~-~~------~~~~~~~~~~~-~~~--~~~i~~~------~----~~g~~~v~~~~~q~v~iar  198 (286)
                      .+....... +   .+. .+      .++..+..... ...  .+.+.+.      +    .+....+++|++||+++||
T Consensus        73 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr  152 (240)
T 1ji0_A           73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR  152 (240)
T ss_dssp             CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred             CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence            333332211 1   221 11      22222111000 001  1122222      1    1223457789999999999


Q ss_pred             HHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          199 RILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       199 al~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~------~~~~d~v~~l~~G~i  217 (240)
T 1ji0_A          153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA------LKVAHYGYVLETGQI  217 (240)
T ss_dssp             HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            99988888888      7777677777666543  344777789988764      367999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.81  E-value=1.6e-22  Score=180.84  Aligned_cols=177  Identities=17%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++....+.+.          ++|.++...+.
T Consensus        12 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~----------i~g~~i~~~~~   80 (372)
T 1v43_A           12 VKLENLTKRFGNFTAVNKLNLTIKD-GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY----------FGDRDVTYLPP   80 (372)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE----------ETTEECTTSCG
T ss_pred             EEEEEEEEEECCEEEEeeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCceEEE----------ECCEECCCCCh
Confidence            788999999986  78999999998 999999999999999999999999873333333          45554422211


Q ss_pred             HH--HHHHhhcc------chhhhheecccccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCC
Q 043263          146 EE--FLQMVDKN------ELLEYALVYGDYKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDS  204 (286)
Q Consensus       146 ~~--~~~~i~~~------~~~~~~~~~~~~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~  204 (286)
                      ..  +....++.      ...++..+....++...+    .+.+++         .+....+++|++||+++||+++.+|
T Consensus        81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  160 (372)
T 1v43_A           81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP  160 (372)
T ss_dssp             GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred             hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            10  00000111      222222221112222222    233332         2233568899999999999999888


Q ss_pred             cEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          205 AVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       205 ~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++++      ||+.....+.+.|.+   ..+.+...++|+++.+      ...||+|+++++|++
T Consensus       161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i  220 (372)
T 1v43_A          161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA------MTMGDRIAVMNRGQL  220 (372)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            88777      666666666655543   2244777789988875      367999999999865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.81  E-value=2.9e-23  Score=184.99  Aligned_cols=175  Identities=18%  Similarity=0.202  Sum_probs=116.2

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +++++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.++...
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~i~~~   70 (362)
T 2it1_A            4 IKLENIVKKFGNFTALNNINLKIKD-GEFMALLGPSGSGKSTLLYTIAGIYK------------PTSGKIYFDEKDVTEL   70 (362)
T ss_dssp             EEEEEEEEESSSSEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTS
T ss_pred             EEEEeEEEEECCEEEEEeeEEEECC-CCEEEEECCCCchHHHHHHHHhcCCC------------CCceEEEECCEECCcC
Confidence            667899999976  68999999998 99999999999999999999999987            44554  556554322


Q ss_pred             CHHH--HHHHhhccchhhhheeccc------ccCccHH----HHHHHHh---------cCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPKK----QIREYMA---------KGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~----~i~~~~~---------~g~~~v~~~~~q~v~iaral~~  202 (286)
                      +...  +....++..+..+..+..|      .++...+    .+.++++         +....+++|++||+++||+++.
T Consensus        71 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  150 (362)
T 2it1_A           71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK  150 (362)
T ss_dssp             CGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             CHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence            2110  0000122222222222222      1122222    2333321         2234577899999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++++      ||+.....+.+.|.+   ..+.+...++|+++.+      ...||+|+++++|++
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i  212 (362)
T 2it1_A          151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA------LAMADRIAVIREGEI  212 (362)
T ss_dssp             CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence            8888887      777666666665543   2244777789988775      368999999999865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.81  E-value=1.1e-22  Score=174.29  Aligned_cols=174  Identities=16%  Similarity=0.216  Sum_probs=117.6

Q ss_pred             HHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee
Q 043263           67 IELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~  141 (286)
                      .++++||++.|+.     +|+++++.+++ |++++|+||||||||||+++|+|++.. .+.+.          ++|.++.
T Consensus        17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~----------i~g~~i~   84 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQTNHRTLKSINFFIPS-GTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK----------IGGKNVN   84 (260)
T ss_dssp             CEEEEEEEECCTTCCSSCSEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE----------ETTEEGG
T ss_pred             eEEEEEEEEEeCCCCcCceeEeeEEEECC-CCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE----------ECCEEhh
Confidence            4788999999963     68899999998 999999999999999999999999752 33333          5676654


Q ss_pred             eeCHHHHHHHh---hcc-ch-----hhhheecccccCccHHHHHHHHh--------------------cCCcEEEEeCHH
Q 043263          142 FVSKEEFLQMV---DKN-EL-----LEYALVYGDYKGIPKKQIREYMA--------------------KGYDIVLRVDIQ  192 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~-~~-----~~~~~~~~~~~~~~~~~i~~~~~--------------------~g~~~v~~~~~q  192 (286)
                      ..+...++..+   .+. .+     .++.. ++.. ....+.+.+++.                    +....+++|++|
T Consensus        85 ~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~-~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkq  162 (260)
T 2ghi_A           85 KYNRNSIRSIIGIVPQDTILFNETIKYNIL-YGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQ  162 (260)
T ss_dssp             GBCHHHHHTTEEEECSSCCCCSEEHHHHHH-TTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHH
T ss_pred             hcCHHHHhccEEEEcCCCcccccCHHHHHh-ccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHH
Confidence            44444443322   222 11     22221 1111 112223322211                    112457789999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++||+++.+|+++|+      ||+.+...+.+.|.+.. +.+...++|+++.       ...||+|+++++|++
T Consensus       163 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~-------~~~~d~i~~l~~G~i  231 (260)
T 2ghi_A          163 RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST-------ISSAESIILLNKGKI  231 (260)
T ss_dssp             HHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-------STTCSEEEEEETTEE
T ss_pred             HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH-------HHhCCEEEEEECCEE
Confidence            99999999988888888      77776777777666532 3466677898765       456999999998865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.81  E-value=7.6e-23  Score=182.14  Aligned_cols=175  Identities=19%  Similarity=0.174  Sum_probs=115.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.++...
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~i~~~   70 (359)
T 2yyz_A            4 IRVVNLKKYFGKVKAVDGVSFEVKD-GEFVALLGPSGCGKTTTLLMLAGIYK------------PTSGEIYFDDVLVNDI   70 (359)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTS
T ss_pred             EEEEEEEEEECCEEEEeeeEEEEcC-CCEEEEEcCCCchHHHHHHHHHCCCC------------CCccEEEECCEECCCC
Confidence            567899999976  68999999998 99999999999999999999999987            44554  556554322


Q ss_pred             CHHH--HHHHhhccchhhhheeccc------ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      +...  +....++..+..+..+..|      .++...    +.+.+++         .+....+++|++||+++||+++.
T Consensus        71 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~  150 (359)
T 2yyz_A           71 PPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK  150 (359)
T ss_dssp             CGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            2110  0001122222222111111      122221    1233332         22234677899999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++++      ||+.....+.+.|.+   ..+.+...++|+++.+      ...||+|+++++|++
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~------~~~adri~vl~~G~i  212 (359)
T 2yyz_A          151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA------MTMASRIAVFNQGKL  212 (359)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            8888777      666666666655543   2244777789988875      367999999998865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.81  E-value=1.4e-22  Score=173.31  Aligned_cols=176  Identities=15%  Similarity=0.155  Sum_probs=117.7

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~-Ge~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~   73 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNK-GDVTLIIGPNGSGKSTLINVITGFLK------------ADEGRVYFENKDITN   73 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECTT
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEECCC
Confidence            3788999999986  79999999998 99999999999999999999999987            55555  66766543


Q ss_pred             eCHH-HHHHHh---hc-cch------hhhheecccc--cC-----------cc----HHHHHHHHh---------cCCcE
Q 043263          143 VSKE-EFLQMV---DK-NEL------LEYALVYGDY--KG-----------IP----KKQIREYMA---------KGYDI  185 (286)
Q Consensus       143 ~~~~-~~~~~i---~~-~~~------~~~~~~~~~~--~~-----------~~----~~~i~~~~~---------~g~~~  185 (286)
                      .+.. .++..+   .| ..+      .++..+....  ++           ..    .+.+.+.++         +....
T Consensus        74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  153 (257)
T 1g6h_A           74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE  153 (257)
T ss_dssp             CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred             CCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh
Confidence            3322 222211   22 112      2222111111  11           11    122333322         12235


Q ss_pred             EEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          186 VLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       186 v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +++|++||+++|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|++++
T Consensus       154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~------~~~~d~v~~l~  227 (257)
T 1g6h_A          154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV------LNYIDHLYVMF  227 (257)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT------GGGCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH------HHhCCEEEEEE
Confidence            778999999999999988888777      7776666666666542  244667778887763      36799999999


Q ss_pred             CCCH
Q 043263          258 EGKL  261 (286)
Q Consensus       258 ~G~i  261 (286)
                      +|++
T Consensus       228 ~G~i  231 (257)
T 1g6h_A          228 NGQI  231 (257)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            8865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.81  E-value=3.5e-22  Score=204.16  Aligned_cols=177  Identities=15%  Similarity=0.224  Sum_probs=133.0

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      ...++++||+|.|+.     +|+++++.+++ |++++|+||||||||||+++|.|+++            |.+|+  ++|
T Consensus       385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~-G~~~~ivG~sGsGKSTl~~ll~g~~~------------~~~G~i~i~g  451 (1284)
T 3g5u_A          385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKS-GQTVALVGNSGCGKSTTVQLMQRLYD------------PLDGMVSIDG  451 (1284)
T ss_dssp             CCCEEEEEEEECCSSTTSCCSEEEEEEEECT-TCEEEEECCSSSSHHHHHHHTTTSSC------------CSEEEEEETT
T ss_pred             CCeEEEEEEEEEcCCCCCCcceecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECC
Confidence            346899999999963     68999999998 99999999999999999999999997            66666  889


Q ss_pred             cceeeeCHHHHHHHh---hccchhhhheecccc----cCccHHHHHHH------------HhcCCc--------EEEEeC
Q 043263          138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDY----KGIPKKQIREY------------MAKGYD--------IVLRVD  190 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~----~~~~~~~i~~~------------~~~g~~--------~v~~~~  190 (286)
                      .++...+...++..+   .|+..+.+..+..|+    .....+++.++            ++.|.+        .+++||
T Consensus       452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq  531 (1284)
T 3g5u_A          452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ  531 (1284)
T ss_dssp             EEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHH
T ss_pred             EEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHH
Confidence            998888888877754   444332222222221    01233333332            233333        466789


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++||+++.+|+++|+      ||+.++..+.+.+... .+.|...|+||++.       +..||+|+++++|++
T Consensus       532 ~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~-------i~~~d~i~vl~~G~i  602 (1284)
T 3g5u_A          532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST-------VRNADVIAGFDGGVI  602 (1284)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH-------HTTCSEEEECSSSCC
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH-------HHcCCEEEEEECCEE
Confidence            9999999999999999988      7777677776666543 34578888999998       467999999999976

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.81  E-value=3.3e-22  Score=171.49  Aligned_cols=176  Identities=18%  Similarity=0.172  Sum_probs=118.2

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++..
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~-Ge~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~   72 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSEGAIIVNGQNINL   72 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECCE
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEccc
Confidence            3778999999976  79999999998 99999999999999999999999987            55565  67766531


Q ss_pred             ----------eCHH---HHHHHh---hc-cch------hhhheecc-cccCccH----HHHHHH----------HhcCCc
Q 043263          143 ----------VSKE---EFLQMV---DK-NEL------LEYALVYG-DYKGIPK----KQIREY----------MAKGYD  184 (286)
Q Consensus       143 ----------~~~~---~~~~~i---~~-~~~------~~~~~~~~-~~~~~~~----~~i~~~----------~~~g~~  184 (286)
                                .+..   .++..+   .+ ..+      .++..+.. ..++...    +.+.++          ......
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~  152 (262)
T 1b0u_A           73 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV  152 (262)
T ss_dssp             EECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred             cccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence                      2222   222222   22 222      12221111 1112221    122222          222334


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      .+++|++||+++|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++
T Consensus       153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~------~~~~d~v~~l  226 (262)
T 1b0u_A          153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA------RHVSSHVIFL  226 (262)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH------HHHCSEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEE
Confidence            5778999999999999988888777      6666666666655442  245777889988875      3579999999


Q ss_pred             CCCCH
Q 043263          257 AEGKL  261 (286)
Q Consensus       257 ~~G~i  261 (286)
                      ++|++
T Consensus       227 ~~G~i  231 (262)
T 1b0u_A          227 HQGKI  231 (262)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            88864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.81  E-value=5.4e-23  Score=184.17  Aligned_cols=175  Identities=18%  Similarity=0.215  Sum_probs=116.7

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee-
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF-  142 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~-  142 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.++.. 
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~~~~~   70 (372)
T 1g29_1            4 VRLVDVWKVFGEVTAVREMSLEVKD-GEFMILLGPSGCGKTTTLRMIAGLEE------------PSRGQIYIGDKLVADP   70 (372)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTEEEEEG
T ss_pred             EEEEeEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCcHHHHHHHHHHcCCC------------CCccEEEECCEECccc
Confidence            567899999976  78999999998 99999999999999999999999987            55555  56666543 


Q ss_pred             -----eCHHH--HHHHhhccchhhhheeccc------ccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHH
Q 043263          143 -----VSKEE--FLQMVDKNELLEYALVYGD------YKGIPKK----QIREYM---------AKGYDIVLRVDIQGART  196 (286)
Q Consensus       143 -----~~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~i  196 (286)
                           .....  +....++..+..+..+..|      .++...+    .+.+++         .+....+++|++||+++
T Consensus        71 ~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  150 (372)
T 1g29_1           71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (372)
T ss_dssp             GGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             cccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence                 22211  0001122222222222222      1122222    222222         22234577899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+++.+|+++++      ||+.....+.+.|.+   ..+.+...++|+++.+      ...||+|+++++|++
T Consensus       151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i  218 (372)
T 1g29_1          151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA------MTMGDRIAVMNRGVL  218 (372)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH------HHhCCEEEEEeCCEE
Confidence            9999988888777      666666666555543   2244777789988875      367999999998865

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.80  E-value=1.6e-22  Score=174.80  Aligned_cols=176  Identities=14%  Similarity=0.109  Sum_probs=116.6

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee-
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF-  141 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~-  141 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.++. 
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~-Ge~~~liG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~~~~~   87 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAK-GDKWILYGLNGAGKTTLLNILNAYEP------------ATSGTVNLFGKMPGK   87 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTBCCC-
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCeEEEECCEEccc
Confidence            4788999999976  79999999998 99999999999999999999999987            55555  5666553 


Q ss_pred             -eeCHHHHHHHh---hcc---------chhhhheecc----cccCc-c---HHHHHHHHh---------cCCcEEEEeCH
Q 043263          142 -FVSKEEFLQMV---DKN---------ELLEYALVYG----DYKGI-P---KKQIREYMA---------KGYDIVLRVDI  191 (286)
Q Consensus       142 -~~~~~~~~~~i---~~~---------~~~~~~~~~~----~~~~~-~---~~~i~~~~~---------~g~~~v~~~~~  191 (286)
                       ..+...++..+   .+.         ...++..+..    ..++. .   .+.+.++++         +....+++|++
T Consensus        88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqk  167 (279)
T 2ihy_A           88 VGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEK  167 (279)
T ss_dssp             --CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred             ccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence             22333332211   111         1222221110    00111 1   122333322         22235778999


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCH--HHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENR--EELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~--~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+++||+++.+|+++|+      ||+.+...+.+.|.+.  .+.+.  ..++|+++..      ...||+|+++++|++
T Consensus       168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~------~~~~d~v~~l~~G~i  241 (279)
T 2ihy_A          168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI------TANFSKILLLKDGQS  241 (279)
T ss_dssp             HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC------CTTCCEEEEEETTEE
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH------HHhCCEEEEEECCEE
Confidence            999999999988888887      7777676776665542  14477  7778987763      368999999998865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.80  E-value=2.3e-22  Score=178.95  Aligned_cols=175  Identities=18%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ++++||++.|+.    +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.++.
T Consensus         4 l~i~~l~~~y~~~~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~~i~   70 (353)
T 1oxx_K            4 IIVKNVSKVFKKGKVVALDNVNINIEN-GERFGILGPSGAGKTTFMRIIAGLDV------------PSTGELYFDDRLVA   70 (353)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECT-TCEEEEECSCHHHHHHHHHHHHTSSC------------CSEEEEEETTEEEE
T ss_pred             EEEEeEEEEECCEeeeeEeceEEEECC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEECc
Confidence            567888888874    57889999998 99999999999999999999999987            55555  5666554


Q ss_pred             e-----eCHHH--HHHHhhccchhhhheecc------cccCccH----HHHHHHH---------hcCCcEEEEeCHHHHH
Q 043263          142 F-----VSKEE--FLQMVDKNELLEYALVYG------DYKGIPK----KQIREYM---------AKGYDIVLRVDIQGAR  195 (286)
Q Consensus       142 ~-----~~~~~--~~~~i~~~~~~~~~~~~~------~~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~  195 (286)
                      .     .....  +....++..+..+..+..      ..++...    +.+.+++         .+....+++|++||++
T Consensus        71 ~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva  150 (353)
T 1oxx_K           71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA  150 (353)
T ss_dssp             ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred             ccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence            3     11110  000112222222211211      1222222    2233332         2223457789999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++.+|+++++      ||+.....+.+.|.+.   .+.+...++|+++.+      ...||+|+++++|++
T Consensus       151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~------~~~adri~vl~~G~i  219 (353)
T 1oxx_K          151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI------FAIADRVGVLVKGKL  219 (353)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            99999999998888      8888777777666542   244777789988875      367999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.80  E-value=6e-23  Score=182.18  Aligned_cols=174  Identities=19%  Similarity=0.199  Sum_probs=116.6

Q ss_pred             HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      ++++||++.|+. .++++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.++....
T Consensus         2 l~~~~l~~~y~~~~l~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~~~g~~i~~~~   68 (348)
T 3d31_A            2 IEIESLSRKWKNFSLDNLSLKVES-GEYFVILGPTGAGKTLFLELIAGFHV------------PDSGRILLDGKDVTDLS   68 (348)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECT-TCEEEEECCCTHHHHHHHHHHHTSSC------------CSEEEEEETTEECTTSC
T ss_pred             EEEEEEEEEECCEEEeeeEEEEcC-CCEEEEECCCCccHHHHHHHHHcCCC------------CCCcEEEECCEECCCCc
Confidence            456788999986 78999999998 99999999999999999999999987            55555  5666553322


Q ss_pred             HHHHHH--Hh-hccchhhhheecccc------cCcc-HHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          145 KEEFLQ--MV-DKNELLEYALVYGDY------KGIP-KKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       145 ~~~~~~--~i-~~~~~~~~~~~~~~~------~~~~-~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      ... +.  ++ ++..+..+..+..|+      ++.. .+.+.+++         .+....+++|++||+++||+++.+|+
T Consensus        69 ~~~-r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~  147 (348)
T 3d31_A           69 PEK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK  147 (348)
T ss_dssp             HHH-HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred             hhh-CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            211 11  11 222222222222221      1111 13333332         22234577899999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++      ||+.....+.+.|.+   ..+.+...++|+++.+      ...||+|+++++|++
T Consensus       148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~------~~~adri~vl~~G~i  206 (348)
T 3d31_A          148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA------RIMADRIAVVMDGKL  206 (348)
T ss_dssp             EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHCSEEEEESSSCE
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            8777      666666666665543   2244777789988775      368999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.79  E-value=5.8e-22  Score=176.04  Aligned_cols=178  Identities=17%  Similarity=0.172  Sum_probs=115.3

Q ss_pred             HHHhHhHHHHh-cc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee
Q 043263           67 IELLRSLEASL-GH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV  143 (286)
Q Consensus        67 ~i~~~~v~~~~-~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~  143 (286)
                      .++++||++.| +.  +|+++++.+.+ |++++|+||||||||||+++|+|++....+.+.          ++|.++...
T Consensus        14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~----------i~g~~i~~~   82 (355)
T 1z47_A           14 TIEFVGVEKIYPGGARSVRGVSFQIRE-GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW----------IGGKRVTDL   82 (355)
T ss_dssp             EEEEEEEEECCTTSTTCEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE----------ETTEECTTC
T ss_pred             eEEEEEEEEEEcCCCEEEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE----------ECCEECCcC
Confidence            47889999999 65  68899999998 999999999999999999999999873333333          455544221


Q ss_pred             CHHH--HHHHhhccchhhhheeccc------ccCccH----HHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPK----KQIREYM---------AKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~----~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      ....  +....++..+..+..+..|      .++...    +.+.+++         .+....+++|++||+++||+++.
T Consensus        83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~  162 (355)
T 1z47_A           83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP  162 (355)
T ss_dssp             CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence            1110  0000111112121112111      112222    2233332         22234577899999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++++      ||+.....+.+.|.+   ..+.+...++|+++.+      ...||+|+++++|++
T Consensus       163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a------~~~adri~vl~~G~i  224 (355)
T 1z47_A          163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA------LEVADRVLVLHEGNV  224 (355)
T ss_dssp             CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH------HHhCCEEEEEECCEE
Confidence            8888777      666666666555543   2244777789988875      367999999998865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.79  E-value=1.8e-21  Score=198.92  Aligned_cols=177  Identities=18%  Similarity=0.228  Sum_probs=131.9

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      ...++++||+|.|+.     .|+++++.+++ |+++||+||||||||||+++|.|+++            |..|+  ++|
T Consensus      1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~-Ge~v~ivG~sGsGKSTl~~~l~g~~~------------p~~G~I~i~g 1094 (1284)
T 3g5u_A         1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKK-GQTLALVGSSGCGKSTVVQLLERFYD------------PMAGSVFLDG 1094 (1284)
T ss_dssp             SCCEEEEEEEBCCSCGGGCCSBSSCCEEECS-SSEEEEECSSSTTHHHHHHHHTTSSC------------CSEEEEESSS
T ss_pred             CCcEEEEEEEEECCCCCCCeeecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECC
Confidence            345899999999963     69999999998 99999999999999999999999997            66666  789


Q ss_pred             cceeeeCHHHHHHHh---hccchhhhheecccc------cCccHHHHHHH------------HhcCCc--------EEEE
Q 043263          138 KDYFFVSKEEFLQMV---DKNELLEYALVYGDY------KGIPKKQIREY------------MAKGYD--------IVLR  188 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~------~~~~~~~i~~~------------~~~g~~--------~v~~  188 (286)
                      .++...+...++..+   .|+..+....+..|+      ...+.+++.++            ++.|++        .+++
T Consensus      1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A         1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp             SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred             EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence            988777777666543   444332222222221      12333333332            233333        4667


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+||+++||+++.+|+++|+      ||+.++..+.+.|.+. .+.|...|+||++.       +..||+|+++++|++
T Consensus      1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~-------i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A         1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST-------IQNADLIVVIQNGKV 1247 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG-------GGSCSEEEEEETBEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH-------HHcCCEEEEEECCEE
Confidence            899999999999999999888      7877777777777653 34588888999998       567999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.78  E-value=7.5e-22  Score=168.20  Aligned_cols=177  Identities=14%  Similarity=0.113  Sum_probs=109.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc--cCcceeeeeecccCCCCCCcCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGEVNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~--~~~~~~~i~~~~r~~~~G~~~g~~~~~~  143 (286)
                      ++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|+  +.+..+.+.          ++|.++...
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~----------~~g~~~~~~   72 (250)
T 2d2e_A            4 LEIRDLWASIDGETILKGVNLVVPK-GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL----------LDGENILEL   72 (250)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE----------ETTEECTTS
T ss_pred             EEEEeEEEEECCEEEEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE----------ECCEECCCC
Confidence            567899999975  79999999998 999999999999999999999997  542333333          566555433


Q ss_pred             CHHHHHH----Hhhcc-chh------hhheecc-cccC--cc----HHHHHHHH----------hcCCcE-EEEeCHHHH
Q 043263          144 SKEEFLQ----MVDKN-ELL------EYALVYG-DYKG--IP----KKQIREYM----------AKGYDI-VLRVDIQGA  194 (286)
Q Consensus       144 ~~~~~~~----~i~~~-~~~------~~~~~~~-~~~~--~~----~~~i~~~~----------~~g~~~-v~~~~~q~v  194 (286)
                      +......    .+.+. .+.      ++..+.. ...+  ..    .+.+.+++          ...... +++|++||+
T Consensus        73 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv  152 (250)
T 2d2e_A           73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN  152 (250)
T ss_dssp             CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred             CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence            3332211    11221 111      1111100 0001  11    11222221          112235 999999999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCC-CcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKN-FDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~G~i  261 (286)
                      ++||+++.+|+++|+      ||+.+...+.+.|.+..  +.+...++|+++..      ... ||+|+++++|++
T Consensus       153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~------~~~~~d~v~~l~~G~i  222 (250)
T 2d2e_A          153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL------NYIQPDKVHVMMDGRV  222 (250)
T ss_dssp             HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG------GTSCCSEEEEEETTEE
T ss_pred             HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhcCCEEEEEECCEE
Confidence            999999988888887      77766777777666532  34667778987653      245 599999988865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.78  E-value=2.2e-22  Score=170.15  Aligned_cols=172  Identities=15%  Similarity=0.241  Sum_probs=109.2

Q ss_pred             HHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeee
Q 043263           68 ELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~  143 (286)
                      ++++||++.|+  .  +|+++++.+.+ |++++|+||||||||||+++|+|++++..+.+.          ++|. +.++
T Consensus         4 l~~~~l~~~y~~~~~~vl~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~----------~~g~-i~~v   71 (237)
T 2cbz_A            4 ITVRNATFTWARSDPPTLNGITFSIPE-GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA----------IKGS-VAYV   71 (237)
T ss_dssp             EEEEEEEEESCTTSCCSEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE----------ECSC-EEEE
T ss_pred             EEEEEEEEEeCCCCCceeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE----------ECCE-EEEE
Confidence            56789999996  2  78999999998 999999999999999999999999874444433          3331 2222


Q ss_pred             CHHHHHHHhhccchhhhheecccccCccHHHHHHH------H-----------hcCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263          144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY------M-----------AKGYDIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~------~-----------~~g~~~v~~~~~q~v~iaral~~~~~~  206 (286)
                      .+..   .+......++..+.........+.+.+.      +           .+....+++|++||+++||+++.+|++
T Consensus        72 ~Q~~---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l  148 (237)
T 2cbz_A           72 PQQA---WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI  148 (237)
T ss_dssp             CSSC---CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             cCCC---cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            1110   0011112222211111111111111111      1           122346778999999999999988888


Q ss_pred             EEE------EecCCHHHHHHHHH---H-hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          207 FVF------LAAESEMALVERLV---E-RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~---~-r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+      ||+.+...+.+.+.   + ..+.+...++|+++.       ...||+|+++++|++
T Consensus       149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~-------~~~~d~v~~l~~G~i  206 (237)
T 2cbz_A          149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY-------LPQVDVIIVMSGGKI  206 (237)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT-------GGGSSEEEEEETTEE
T ss_pred             EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH-------HHhCCEEEEEeCCEE
Confidence            877      66666667777663   2 123366667887765       356999999998865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.78  E-value=7.4e-22  Score=167.85  Aligned_cols=171  Identities=13%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++++||++.  .+|+++++.+.+ |++++|+||||||||||+++|+|++.            |. |+  ++|.++...+.
T Consensus         5 l~~~~l~~~--~vl~~vsl~i~~-Ge~~~liG~NGsGKSTLlk~l~Gl~~------------p~-G~i~~~g~~~~~~~~   68 (249)
T 2qi9_C            5 MQLQDVAES--TRLGPLSGEVRA-GEILHLVGPNGAGKSTLLARMAGMTS------------GK-GSIQFAGQPLEAWSA   68 (249)
T ss_dssp             EEEEEEEET--TTEEEEEEEEET-TCEEEEECCTTSSHHHHHHHHTTSSC------------CE-EEEEETTEEGGGSCH
T ss_pred             EEEEceEEE--EEEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CC-eEEEECCEECCcCCH
Confidence            456667666  468888888887 99999999999999999999999987            55 55  67776544444


Q ss_pred             HHHHHHh---hc-cch------hhhheecccccCccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCc-
Q 043263          146 EEFLQMV---DK-NEL------LEYALVYGDYKGIPKKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSA-  205 (286)
Q Consensus       146 ~~~~~~i---~~-~~~------~~~~~~~~~~~~~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~-  205 (286)
                      ..++..+   .+ ..+      .++..+ +..+....+.+.++++         .....+++|++||+.+|++++.+|+ 
T Consensus        69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~  147 (249)
T 2qi9_C           69 TKLALHRAYLSQQQTPPFATPVWHYLTL-HQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ  147 (249)
T ss_dssp             HHHHHHEEEECSCCCCCTTCBHHHHHHT-TCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhceEEEECCCCccCCCCcHHHHHHH-hhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCc
Confidence            4444332   22 211      222211 1111112333444432         2234577899999999999998888 


Q ss_pred             ------EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 ------VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ------~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                            ++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+++++++|++
T Consensus       148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~------~~~~d~v~~l~~G~i  211 (249)
T 2qi9_C          148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT------LRHAHRAWLLKGGKM  211 (249)
T ss_dssp             TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence                  7777      7777677777766543  244677779988874      367999999988865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.76  E-value=2.6e-21  Score=166.30  Aligned_cols=172  Identities=13%  Similarity=0.133  Sum_probs=112.8

Q ss_pred             HHhHhHHHHhc--c-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCc
Q 043263           68 ELLRSLEASLG--H-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGK  138 (286)
Q Consensus        68 i~~~~v~~~~~--~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~  138 (286)
                      ++++||++.|+  .     +|+++++.+.+ |++++|+||||||||||+++|+|++.            |..|+  ++|.
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~i~Gl~~------------p~~G~I~~~g~   69 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINE-GECLLVAGNTGSGKSTLLQIVAGLIE------------PTSGDVLYDGE   69 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCE
Confidence            45678888885  2     68899999998 99999999999999999999999987            55555  5665


Q ss_pred             ceeeeCHHHHHHHh---hcc--------chhhhheeccccc---CccHHHHHHHHh-----------cCCcEEEEeCHHH
Q 043263          139 DYFFVSKEEFLQMV---DKN--------ELLEYALVYGDYK---GIPKKQIREYMA-----------KGYDIVLRVDIQG  193 (286)
Q Consensus       139 ~~~~~~~~~~~~~i---~~~--------~~~~~~~~~~~~~---~~~~~~i~~~~~-----------~g~~~v~~~~~q~  193 (286)
                      ++..   ..++..+   .+.        ...++..+....+   ....+.+.++++           .....+++|++||
T Consensus        70 ~~~~---~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qR  146 (266)
T 2yz2_A           70 RKKG---YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRR  146 (266)
T ss_dssp             ECCH---HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHH
T ss_pred             ECch---HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHH
Confidence            4421   1122111   121        1112221111110   111222333322           2223577899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++|++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~------~~~~d~v~~l~~G~i  216 (266)
T 2yz2_A          147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV------INHVDRVVVLEKGKK  216 (266)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT------GGGCSEEEEEETTEE
T ss_pred             HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888888      7777777777766543  244677778877663      356999999988865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.76  E-value=3.9e-21  Score=162.56  Aligned_cols=176  Identities=15%  Similarity=0.062  Sum_probs=111.8

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHH-
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKE-  146 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~-  146 (286)
                      ++++||++.|+..++++++.+.+  ++++|+||||||||||+++|+|++.+..+.+.          ++|.++...... 
T Consensus         2 l~~~~l~~~y~~~l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~----------~~g~~~~~~~~~~   69 (240)
T 2onk_A            2 FLKVRAEKRLGNFRLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR----------LNGADITPLPPER   69 (240)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE----------ETTEECTTSCTTT
T ss_pred             EEEEEEEEEeCCEEeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----------ECCEECCcCchhh
Confidence            45678888887678888888885  89999999999999999999999874444443          344332110000 


Q ss_pred             -HHHHHhhcc------chhhhheecccccCcc--HHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCcEEE
Q 043263          147 -EFLQMVDKN------ELLEYALVYGDYKGIP--KKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSAVFV  208 (286)
Q Consensus       147 -~~~~~i~~~------~~~~~~~~~~~~~~~~--~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~~~I  208 (286)
                       .+....++.      ...++..+....++..  .+.+.++++         +....+++|++||+++|++++.+|+++|
T Consensus        70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  149 (240)
T 2onk_A           70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL  149 (240)
T ss_dssp             SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred             CcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence             000000111      1112211111111111  223333332         1224577899999999999998998888


Q ss_pred             E------EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          209 F------LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       209 l------ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +      ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++|++
T Consensus       150 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~d~i~~l~~G~i  205 (240)
T 2onk_A          150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA------AMLADEVAVMLNGRI  205 (240)
T ss_dssp             EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            8      7777777777666542   245777789988764      367999999998865

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.75  E-value=2.4e-21  Score=166.58  Aligned_cols=176  Identities=15%  Similarity=0.165  Sum_probs=115.3

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc--CcceeeeeecccCCCCCC--cCCcce
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR--DSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      .++++||++.|+.  +|+++++.+.+ |++++|+||||||||||+++|+|+.  .            |..|+  ++|.++
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~------------p~~G~I~~~g~~i   86 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHP-GEVHAIMGPNGSGKSTLSATLAGREDYE------------VTGGTVEFKGKDL   86 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTCTTCE------------EEEEEEEETTEEG
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCC------------CCCeEEEECCEEC
Confidence            4789999999975  79999999998 9999999999999999999999983  3            33444  566665


Q ss_pred             eeeCHHHHHHH----hhcc-chh------hhheecc-cc---cC---ccH----HHHHHHHh---------cCC-c-EEE
Q 043263          141 FFVSKEEFLQM----VDKN-ELL------EYALVYG-DY---KG---IPK----KQIREYMA---------KGY-D-IVL  187 (286)
Q Consensus       141 ~~~~~~~~~~~----i~~~-~~~------~~~~~~~-~~---~~---~~~----~~i~~~~~---------~g~-~-~v~  187 (286)
                      ...+.......    +.+. .+.      ++..... +.   ++   ...    +.+.++++         ... . .++
T Consensus        87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS  166 (267)
T 2zu0_C           87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFS  166 (267)
T ss_dssp             GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCC
T ss_pred             CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCC
Confidence            44343332111    1222 111      1110000 00   01   111    12233221         111 2 388


Q ss_pred             EeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccCC-CcEEEECCC
Q 043263          188 RVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERK--TENREELLVRIATAREEVQHVKN-FDYVVVNAE  258 (286)
Q Consensus       188 ~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~--~~t~~~i~~rl~~~~~~~~~~~~-~d~viv~~~  258 (286)
                      +|++||+++||+++.+|+++|+      ||+.+...+.+.|.+..  +.+...++|+++..      ... ||+|+++++
T Consensus       167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~------~~~~~d~v~~l~~  240 (267)
T 2zu0_C          167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL------DYIKPDYVHVLYQ  240 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG------GTSCCSEEEEEET
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH------HhhcCCEEEEEEC
Confidence            8999999999999988888888      77777777777776542  34666778877653      244 899999998


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       241 G~i  243 (267)
T 2zu0_C          241 GRI  243 (267)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.75  E-value=3.1e-21  Score=164.53  Aligned_cols=173  Identities=12%  Similarity=0.020  Sum_probs=111.1

Q ss_pred             HHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263           68 ELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS  144 (286)
Q Consensus        68 i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~  144 (286)
                      ++++||++.|+ .  +|+++++.+.+ |++++|+||||||||||+++|+|++.+..+.+..   ....|.+......+  
T Consensus         5 l~i~~l~~~y~~~~~vl~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---~~~i~~v~q~~~~~--   78 (253)
T 2nq2_C            5 LSVENLGFYYQAENFLFQQLNFDLNK-GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---YQSIGFVPQFFSSP--   78 (253)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEET-TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---CSCEEEECSCCCCS--
T ss_pred             EEEeeEEEEeCCCCeEEEEEEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---eccEEEEcCCCccC--
Confidence            67889999997 5  78999999998 9999999999999999999999998755444431   00111111111000  


Q ss_pred             HHHHHHHhhccchhhhheeccc----c----cCccHHHHHHHHh---------cCCcEEEEeCHHHHHHHHHHhCCCcEE
Q 043263          145 KEEFLQMVDKNELLEYALVYGD----Y----KGIPKKQIREYMA---------KGYDIVLRVDIQGARTLRRILGDSAVF  207 (286)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~----~----~~~~~~~i~~~~~---------~g~~~v~~~~~q~v~iaral~~~~~~~  207 (286)
                              ......++..+...    .    .....+.+.++++         .....+++|++||+++|++++.+|+++
T Consensus        79 --------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll  150 (253)
T 2nq2_C           79 --------FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI  150 (253)
T ss_dssp             --------SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred             --------CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence                    00011111111000    0    0001122333322         223457789999999999999888888


Q ss_pred             EE------EecCCHHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          208 VF------LAAESEMALVERLVER--K-TENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       208 Il------ld~~~~~~l~~rl~~r--~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      |+      ||+.+...+.+.|.+.  . +.+...++|+++..      ...||+|+++++|+
T Consensus       151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~------~~~~d~v~~l~~G~  206 (253)
T 2nq2_C          151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV------VAIANKTLLLNKQN  206 (253)
T ss_dssp             EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH------HHHCSEEEEEETTE
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH------HHhCCEEEEEeCCe
Confidence            88      7777777777766543  1 44677779988874      36799999998875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.74  E-value=2.2e-21  Score=163.15  Aligned_cols=173  Identities=13%  Similarity=0.177  Sum_probs=106.8

Q ss_pred             HHHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceee
Q 043263           67 IELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~  142 (286)
                      .++++||++.|+  .  +|+++++.+++ |++++|+||||||||||+++|+|++.+..+.+.          ++|. +.+
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----------~~g~-i~~   73 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIER-GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----------HSGR-ISF   73 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEET-TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE----------ECSC-EEE
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE----------ECCE-EEE
Confidence            477889999994  2  78999999998 999999999999999999999999874443333          3331 211


Q ss_pred             eCHHHHHHHhhccchhhhheecccccCccHHH------HHHHHhc-----------CCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          143 VSKEEFLQMVDKNELLEYALVYGDYKGIPKKQ------IREYMAK-----------GYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------i~~~~~~-----------g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      +.+..  .... ....++..+...........      +.+.+..           ....+++|++||+++||+++.+|+
T Consensus        74 v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~  150 (229)
T 2pze_A           74 CSQFS--WIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD  150 (229)
T ss_dssp             ECSSC--CCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             EecCC--cccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            11110  0000 11111111100000000000      0111111           124577899999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERL-VER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl-~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++|+      ||+.+...+.+.+ .+. .+.+...++|+++..       ..||+|+++++|++
T Consensus       151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~-------~~~d~v~~l~~G~i  207 (229)
T 2pze_A          151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-------KKADKILILHEGSS  207 (229)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-------HHCSEEEEEETTEE
T ss_pred             EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH-------HhCCEEEEEECCEE
Confidence            8877      6666666666653 222 233666778987763       35999999998865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.72  E-value=1.2e-21  Score=162.88  Aligned_cols=173  Identities=13%  Similarity=0.188  Sum_probs=108.6

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      .++++||++.|+. +|.++++.+.+ |++++|+||||||||||+++|+|++.+..+.+.          ++|.++.    
T Consensus        10 ~l~~~~ls~~y~~~il~~vsl~i~~-Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~----------~~g~~~~----   74 (214)
T 1sgw_A           10 KLEIRDLSVGYDKPVLERITMTIEK-GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII----------YNGVPIT----   74 (214)
T ss_dssp             EEEEEEEEEESSSEEEEEEEEEEET-TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE----------ETTEEGG----
T ss_pred             eEEEEEEEEEeCCeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE----------ECCEEhh----
Confidence            4788899999975 78899999998 999999999999999999999999873333333          4554431    


Q ss_pred             HHHHHH---h-hcc------chhhhheecccccC--ccHHHHHHHHhc--------CCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          146 EEFLQM---V-DKN------ELLEYALVYGDYKG--IPKKQIREYMAK--------GYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       146 ~~~~~~---i-~~~------~~~~~~~~~~~~~~--~~~~~i~~~~~~--------g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                       .++..   + ++.      ...++..+....++  ...+.+.++++.        ....+++|++||+.+|++++.+|+
T Consensus        75 -~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~  153 (214)
T 1sgw_A           75 -KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAE  153 (214)
T ss_dssp             -GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred             -hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCC
Confidence             01110   0 111      11122111101111  112333333321        123467889999999999999999


Q ss_pred             EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          206 VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ++|+      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|++.. |.++
T Consensus       154 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~------~~~~d~v~~~~-~~~~  211 (214)
T 1sgw_A          154 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY------CDVNENLHKYS-TKID  211 (214)
T ss_dssp             EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT------SSEEEEGGGGB-C---
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEeC-Cccc
Confidence            8888      8888888777766543  233666667876653      35677777554 5553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.72  E-value=2.7e-20  Score=159.37  Aligned_cols=179  Identities=11%  Similarity=0.092  Sum_probs=111.0

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~  141 (286)
                      ++++||++.|+.      +|+++++.+.  |++++|+||||||||||+++|+|++ +..+.+............ ...+.
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~--Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~   77 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN--GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-YIRYS   77 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC--SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC--CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHH-hhheE
Confidence            356778888863      6888898887  9999999999999999999999998 666665532111000000 00111


Q ss_pred             -eeCHHHHHHHhhccchhhhheecccccCccHHHHHHHHh----------cCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          142 -FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMA----------KGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       142 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                       ++.+..   .+ .....++..+....+....+.+.+.++          .....+++|++||+++|++++.+|+++++ 
T Consensus        78 ~~v~Q~~---~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD  153 (263)
T 2pjz_A           78 TNLPEAY---EI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD  153 (263)
T ss_dssp             ECCGGGS---CT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             EEeCCCC---cc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence             111100   00 111112211111111122223333322          12235778899999999999988888888 


Q ss_pred             -----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCc-EEEECCCCCH
Q 043263          210 -----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFD-YVVVNAEGKL  261 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d-~viv~~~G~i  261 (286)
                           ||+.+...+.+.|.+... +...++|+++..      ...|| +++++++|++
T Consensus       154 EPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~------~~~~d~~i~~l~~G~i  204 (263)
T 2pjz_A          154 EPFENVDAARRHVISRYIKEYGK-EGILVTHELDML------NLYKEYKAYFLVGNRL  204 (263)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGG------GGCTTSEEEEEETTEE
T ss_pred             CCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHH------HHhcCceEEEEECCEE
Confidence                 777777777777776544 666678877653      36899 9999998865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.71  E-value=3.4e-20  Score=160.91  Aligned_cols=172  Identities=13%  Similarity=0.171  Sum_probs=98.1

Q ss_pred             hHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           66 KIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        66 ~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      ..++++||++.+..+++++++.+.+ |++++|+||||||||||+++|+|++....+.+.          ++|. +.++.+
T Consensus        39 ~~l~~~~l~~~~~~vl~~isl~i~~-Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~----------~~g~-i~~v~Q  106 (290)
T 2bbs_A           39 DSLSFSNFSLLGTPVLKDINFKIER-GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----------HSGR-ISFCSQ  106 (290)
T ss_dssp             -----------CCCSEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE----------CCSC-EEEECS
T ss_pred             ceEEEEEEEEcCceEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE----------ECCE-EEEEeC
Confidence            4589999999765589999999998 999999999999999999999999874444443          2331 111111


Q ss_pred             HHHHHHhhccchhhhheecccccC-ccHHH------HHHHHhc-----------CCcEEEEeCHHHHHHHHHHhCCCcEE
Q 043263          146 EEFLQMVDKNELLEYALVYGDYKG-IPKKQ------IREYMAK-----------GYDIVLRVDIQGARTLRRILGDSAVF  207 (286)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~------i~~~~~~-----------g~~~v~~~~~q~v~iaral~~~~~~~  207 (286)
                      ..  .... ....++..  +..+. .....      +.+.+..           ....+++|++||+.+||+++.+|+++
T Consensus       107 ~~--~l~~-~tv~enl~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll  181 (290)
T 2bbs_A          107 NS--WIMP-GTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY  181 (290)
T ss_dssp             SC--CCCS-SBHHHHHH--TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred             CC--ccCc-ccHHHHhh--CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence            00  0000 01111111  00000 00000      0111111           11457889999999999999888888


Q ss_pred             EE------EecCCHHHHHHHHH-Hh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          208 VF------LAAESEMALVERLV-ER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       208 Il------ld~~~~~~l~~rl~-~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+      ||+.+...+.+.+. +. .+.+...++|+++..       ..||+|+++++|++
T Consensus       182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~-------~~~d~i~~l~~G~i  236 (290)
T 2bbs_A          182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-------KKADKILILHEGSS  236 (290)
T ss_dssp             EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-------HHSSEEEEEETTEE
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-------HcCCEEEEEECCeE
Confidence            87      77766666666432 21 233666778987663       35999999988864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.69  E-value=5.4e-15  Score=122.09  Aligned_cols=184  Identities=41%  Similarity=0.614  Sum_probs=121.5

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecc
Q 043263           86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYG  165 (286)
Q Consensus        86 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (286)
                      ..+.+ |++++|+|||||||||++++|+++++.+.+...++++.+..+...|..+.+.+...+..+...+.+.+...+++
T Consensus        15 ~~i~~-Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~   93 (207)
T 1znw_A           15 QPAAV-GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHG   93 (207)
T ss_dssp             ----C-CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGG
T ss_pred             CCCCC-CCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcC
Confidence            34555 99999999999999999999999986555556666666666666778888888877776655555554444555


Q ss_pred             --cccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 043263          166 --DYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE  243 (286)
Q Consensus       166 --~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~  243 (286)
                        ..++...+.+.+.+.++...+.+.+...+.-.+..+ ...+-+++..|+...+-+++..++......+..++.....+
T Consensus        94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~  172 (207)
T 1znw_A           94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-PEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIE  172 (207)
T ss_dssp             GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-TTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred             chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-CCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence              456667767777777777777777776554444443 22344555445577887888776544445555555554444


Q ss_pred             hhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          244 VQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .......+.|++.++  ++++......++-
T Consensus       173 l~~~~g~tvi~vtHd--l~~~~~~~d~i~~  200 (207)
T 1znw_A          173 LAAQGDFDKVVVNRR--LESACAELVSLLV  200 (207)
T ss_dssp             HHGGGGSSEEEECSS--HHHHHHHHHHHHC
T ss_pred             HhhhccCcEEEECCC--HHHHHHHHHHHHH
Confidence            432345788888776  8777766665544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.61  E-value=3.7e-18  Score=159.98  Aligned_cols=171  Identities=13%  Similarity=0.109  Sum_probs=107.4

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      .++++++++.|+. .+...++.+.+ |++++|+||||||||||+++|+|++.            |..|+  +++..+.+.
T Consensus       269 ~l~~~~l~~~~~~~~l~~~~~~i~~-Gei~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~~~~i~~~  335 (538)
T 3ozx_A          269 KMKWTKIIKKLGDFQLVVDNGEAKE-GEIIGILGPNGIGKTTFARILVGEIT------------ADEGSVTPEKQILSYK  335 (538)
T ss_dssp             EEEECCEEEEETTEEEEECCEEEET-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSBCCEESSCCCEEEE
T ss_pred             eEEEcceEEEECCEEEEeccceECC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCeeeEee
Confidence            4677888888876 56666777787 99999999999999999999999987            55555  344444332


Q ss_pred             CHHHHHHHhhccchhhhheecc-cccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE----
Q 043263          144 SKEEFLQMVDKNELLEYALVYG-DYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF----  209 (286)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il----  209 (286)
                      .+..+..  ......++..... .........+.++         .......+++|++||+.+||+++.+|+++|+    
T Consensus       336 ~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT  413 (538)
T 3ozx_A          336 PQRIFPN--YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS  413 (538)
T ss_dssp             CSSCCCC--CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             chhcccc--cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            2110000  0000111100000 0000001111111         2223356788999999999999988888777    


Q ss_pred             --EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 --LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 --ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                        ||+.+...+.+.|.+   ..+.+...++|+++..      ...||+|+++++
T Consensus       414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~------~~~aDri~vl~~  461 (538)
T 3ozx_A          414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH------DYIADRIIVFKG  461 (538)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence              666656666655543   2344677889998875      367999999975

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.58  E-value=7.9e-17  Score=152.90  Aligned_cols=169  Identities=14%  Similarity=0.062  Sum_probs=101.7

Q ss_pred             HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-----------C
Q 043263           71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-----------N  136 (286)
Q Consensus        71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-----------~  136 (286)
                      +||++.|+.   .+.+++ .+.+ |++++|+||||||||||+++|+|++.            |..|++           +
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~-Ge~~~LiG~NGsGKSTLlkiL~Gll~------------p~~G~~~~~~~~~~~~~~  160 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKD-GMVVGIVGPNGTGKTTAVKILAGQLI------------PNLCEDNDSWDNVIRAFR  160 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCT-TSEEEEECCTTSSHHHHHHHHTTSSC------------CCTTTTCCCHHHHHHHTT
T ss_pred             CCeEEEECCCCeeeCCCC-CCCC-CCEEEEECCCCChHHHHHHHHhCCCC------------CCCCccccccchhhheeC
Confidence            789999975   477888 7776 99999999999999999999999986            666652           2


Q ss_pred             CcceeeeCHHHHHHHh-----hccc-hhhh---heecccc--c--CccHHHHHHH------HhcCCcEEEEeCHHHHHHH
Q 043263          137 GKDYFFVSKEEFLQMV-----DKNE-LLEY---ALVYGDY--K--GIPKKQIREY------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       137 g~~~~~~~~~~~~~~i-----~~~~-~~~~---~~~~~~~--~--~~~~~~i~~~------~~~g~~~v~~~~~q~v~ia  197 (286)
                      |.++............     .+.. ....   ..+..++  .  ....+++.+.      +......+++|++||+++|
T Consensus       161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA  240 (607)
T 3bk7_A          161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA  240 (607)
T ss_dssp             TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred             CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence            3322110000000000     0000 0000   0000000  0  0011111111      1222345778999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      ++++.+|+++||      ||+.+...+.+.|.+.  .+.+...++|+++..      ...||+|++++++
T Consensus       241 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~------~~~adri~vl~~~  304 (607)
T 3bk7_A          241 AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL------DYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEESC
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHH------HhhCCEEEEECCC
Confidence            999988888777      6666555565555432  244777789988864      3579999998754

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.57  E-value=2.2e-14  Score=129.24  Aligned_cols=161  Identities=12%  Similarity=0.137  Sum_probs=121.8

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhh
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEY  160 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~  160 (286)
                      +..|....+..+..|+|+||+|   +||++.|...++.....   ++|.|+.|+.+|.+|+|+                 
T Consensus       221 YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~---~tr~pR~gE~dG~~Y~Fv-----------------  277 (391)
T 3tsz_A          221 YERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI---AKSEPRDAGTDQRSSGII-----------------  277 (391)
T ss_dssp             EEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE---CCCCCCCSSSCCC--CCC-----------------
T ss_pred             cceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc---ccCCCCCcccCCccCCcC-----------------
Confidence            3444333344578899999998   89999998776543332   578899999999999875                 


Q ss_pred             heecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-CCHHHHHHHHHH
Q 043263          161 ALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT-ENREELLVRIAT  239 (286)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-~t~~~i~~rl~~  239 (286)
                                +.+.+++.+++|..++++.+.|.+..++... ..+++||+.||+.+.|.++ ..|.. .+.+.+..+++.
T Consensus       278 ----------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~-~~p~~IFI~PPS~~~L~~~-~~r~~~~s~e~~~~~~~~  345 (391)
T 3tsz_A          278 ----------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ-WYPIVVFLNPDSKQGVKTM-RMRLCPESRKSARKLYER  345 (391)
T ss_dssp             ----------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTT-CCCEEEEEECCCHHHHHHH-HHHHCSSCCCCHHHHHHH
T ss_pred             ----------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCC-CCCEEEEEeCcCHHHHHHH-HhcCCCCCHHHHHHHHHH
Confidence                      4677889999999999999999998888654 4569999999999999875 44432 344556666666


Q ss_pred             HHH-HhhccCCCcEEEECCCCCHH-HHHHHHHHHHHHHHhc
Q 043263          240 ARE-EVQHVKNFDYVVVNAEGKLD-SAVKLVESVIDAEKAK  278 (286)
Q Consensus       240 ~~~-~~~~~~~~d~viv~~~G~i~-~~~~~l~~~i~~~~~~  278 (286)
                      +.. +..+...+|.||+|++  ++ .++++|.++|..++.+
T Consensus       346 a~~~e~~~~~~fd~vivNd~--l~~~a~~~l~~ii~~~~~~  384 (391)
T 3tsz_A          346 SHKLRKNNHHLFTTTINLNS--MNDGWYGALKEAIQQQQNQ  384 (391)
T ss_dssp             HHHHHHHHGGGCSEEEECCT--TCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCcEEEECCC--cHHHHHHHHHHHHHHhcCC
Confidence            533 3445678999999987  87 6999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.57  E-value=7.3e-17  Score=151.42  Aligned_cols=169  Identities=13%  Similarity=0.088  Sum_probs=99.9

Q ss_pred             HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCc-----------C
Q 043263           71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEV-----------N  136 (286)
Q Consensus        71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~-----------~  136 (286)
                      +||++.|+.   .+.+++ .+.+ |++++|+||||||||||+++|+|++.            |..|++           +
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~-Ge~~~LvG~NGaGKSTLlk~l~Gl~~------------p~~G~~~~~~~~~~~~~~   90 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKE-GMVVGIVGPNGTGKSTAVKILAGQLI------------PNLCGDNDSWDGVIRAFR   90 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCT-TSEEEEECCTTSSHHHHHHHHHTSSC------------CCTTTTCCSHHHHHHHTT
T ss_pred             cCcEEEECCccccccCcC-cCCC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCccCcchhhhHHhhC
Confidence            578888975   477888 7777 99999999999999999999999886            666652           2


Q ss_pred             CcceeeeCHHHHHHHh-----hcc-chhhhh---eecccc--c--CccHHHHHHH------HhcCCcEEEEeCHHHHHHH
Q 043263          137 GKDYFFVSKEEFLQMV-----DKN-ELLEYA---LVYGDY--K--GIPKKQIREY------MAKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       137 g~~~~~~~~~~~~~~i-----~~~-~~~~~~---~~~~~~--~--~~~~~~i~~~------~~~g~~~v~~~~~q~v~ia  197 (286)
                      |.++............     .+. ......   .+..+.  .  ....+++.+.      .......+++|++|++++|
T Consensus        91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iA  170 (538)
T 1yqt_A           91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA  170 (538)
T ss_dssp             TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHH
Confidence            3322110000000000     000 000000   000000  0  0001111111      1112245778999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      ++++.+|+++|+      ||+.+...+.+.|.+.  .+.+...++|++...      ...||+|++++++
T Consensus       171 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~------~~~~dri~vl~~~  234 (538)
T 1yqt_A          171 AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL------DYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEEEE
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEcCc
Confidence            999988887777      6666555555555432  244777889988864      3579999998653

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.55  E-value=2e-14  Score=118.26  Aligned_cols=177  Identities=16%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCC--------cCCccee----eeCHHHHHHHhhccch-
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGE--------VNGKDYF----FVSKEEFLQMVDKNEL-  157 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~--------~~g~~~~----~~~~~~~~~~i~~~~~-  157 (286)
                      +.-|||+|+.||||||++++|.. ++...++.....+. ...|.        .+|.++.    .+++..++..+..+.- 
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            56799999999999999999988 43222222211111 11111        3455443    2567777766533211 


Q ss_pred             h--hhheecccccCccHHHHHHHHhc--CCcEEEEeCHHHH-HHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263          158 L--EYALVYGDYKGIPKKQIREYMAK--GYDIVLRVDIQGA-RTLRRILGDSAVFVFLAAESEMALVERLVERKTENREE  232 (286)
Q Consensus       158 ~--~~~~~~~~~~~~~~~~i~~~~~~--g~~~v~~~~~q~v-~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~  232 (286)
                      .  -+...++.    ..+.+.+.+..  +..++++..+-.- .-...++   +.+|+++++ .+...+|+.+|.+.+.+.
T Consensus        88 ~~~L~~i~HP~----I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~---D~vi~V~ap-~e~r~~Rl~~Rdg~s~ee  159 (210)
T 4i1u_A           88 RRRLEAITHPL----IRAETEREARDAQGPYVIFVVPLLVESRNWKARC---DRVLVVDCP-VDTQIARVMQRNGFTREQ  159 (210)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHC---SEEEEEECC-HHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHhhHH----HHHHHHHHHHhcCCCEEEEEEecccccCCccccC---CeEEEEECC-HHHHHHHHHhcCCCCHHH
Confidence            1  11122222    12233333322  3346666653111 2223333   788999987 888889999998889999


Q ss_pred             HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      +..|++.+++..++...||.||.|++|+++++.+++.+++..+..
T Consensus       160 a~~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          160 VEAIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             HHHHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            999999988877777899998865438999999999999987643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.55  E-value=1.7e-16  Score=148.76  Aligned_cols=164  Identities=21%  Similarity=0.247  Sum_probs=96.3

Q ss_pred             HHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-------------Ccc
Q 043263           74 EASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-------------GKD  139 (286)
Q Consensus        74 ~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-------------g~~  139 (286)
                      +.+||. .+.-..+..+++|+++||+||||||||||+++|+|++.            |+.|++.             |.+
T Consensus         6 ~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~------------p~~G~i~~~~~~~~~~~~~~g~~   73 (538)
T 3ozx_A            6 IHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII------------PNFGDPNSKVGKDEVLKRFRGKE   73 (538)
T ss_dssp             EEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC------------CCTTCTTSCCCHHHHHHHHTTST
T ss_pred             ceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC------------CCCCccccccchhhHHhhcCCee
Confidence            345664 45555566666799999999999999999999999986            6666642             222


Q ss_pred             eeeeCHHHHHHHhhc-------cchhhhhe--eccccc--------CccHHHHHHH------HhcCCcEEEEeCHHHHHH
Q 043263          140 YFFVSKEEFLQMVDK-------NELLEYAL--VYGDYK--------GIPKKQIREY------MAKGYDIVLRVDIQGART  196 (286)
Q Consensus       140 ~~~~~~~~~~~~i~~-------~~~~~~~~--~~~~~~--------~~~~~~i~~~------~~~g~~~v~~~~~q~v~i  196 (286)
                      +..    .+......       ..++....  ..+...        ....+.+.+.      .......+++|++|++++
T Consensus        74 i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~i  149 (538)
T 3ozx_A           74 IYN----YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLV  149 (538)
T ss_dssp             THH----HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHH
T ss_pred             HHH----HHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            110    00000000       00000000  000000        0011111111      122234577899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      |++++.+|+++||      ||+.+...+.+-|.+. .+.+...++|+++..      ...||+|+++++|
T Consensus       150 A~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~------~~~~d~i~vl~~~  213 (538)
T 3ozx_A          150 AASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVL------DYLTDLIHIIYGE  213 (538)
T ss_dssp             HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHH------HHHCSEEEEEEEE
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHH------HhhCCEEEEecCC
Confidence            9999988887777      6655455555555543 244777789998865      3579999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.54  E-value=3.6e-16  Score=148.18  Aligned_cols=169  Identities=13%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             HhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCccee-----e
Q 043263           71 RSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYF-----F  142 (286)
Q Consensus        71 ~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~-----~  142 (286)
                      +|++++|+.   .++.++ .+.+ |++++|+||||||||||+++|+|++.            |..|++.+....     .
T Consensus        81 ~~~~~~Y~~~~~~l~~l~-~~~~-Gei~~LvGpNGaGKSTLLkiL~Gll~------------P~~G~i~~~~~~~~~~~~  146 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLP-TPRP-GQVLGLVGTNGIGKSTALKILAGKQK------------PNLGRFDDPPEWQEIIKY  146 (608)
T ss_dssp             TTEEEECSTTSCEEECCC-CCCT-TSEEEEECCTTSSHHHHHHHHHTSSC------------CCTTTTCCSSCHHHHHHH
T ss_pred             CCeEEEECCCceeecCCC-CCCC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCceEecccchhhhhhe
Confidence            467778864   234444 4554 99999999999999999999999986            777775322110     0


Q ss_pred             e---CHHH-HHHHhhcc-------chhhhh--eeccc----------ccCccHHHHHHH---------HhcCCcEEEEeC
Q 043263          143 V---SKEE-FLQMVDKN-------ELLEYA--LVYGD----------YKGIPKKQIREY---------MAKGYDIVLRVD  190 (286)
Q Consensus       143 ~---~~~~-~~~~i~~~-------~~~~~~--~~~~~----------~~~~~~~~i~~~---------~~~g~~~v~~~~  190 (286)
                      .   .... +.......       .+.++.  ...+.          ......+.+.+.         +......+++|+
T Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe  226 (608)
T 3j16_B          147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGE  226 (608)
T ss_dssp             TTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHH
T ss_pred             ecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHH
Confidence            0   0000 11110000       000000  00000          000111223332         223345677899


Q ss_pred             HHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          191 IQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       191 ~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      +|++++|++++.+|+++||      ||+.+...+.+.|++.  .+.+...++|+++..      ...||+|+++.++
T Consensus       227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~------~~~~drv~vl~~~  297 (608)
T 3j16_B          227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVL------DYLSDFVCIIYGV  297 (608)
T ss_dssp             HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHH------HHHCSEEEEEESC
T ss_pred             HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeCC
Confidence            9999999999988888777      6665555555555543  234677779998875      3679999999754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.54  E-value=2.1e-16  Score=155.51  Aligned_cols=73  Identities=12%  Similarity=-0.037  Sum_probs=59.1

Q ss_pred             CcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          183 YDIVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      ...+++|++||+.+|++++.+|+++|+      ||+.+...+.+.|.+.++ +...++|+++..      ...||+|+++
T Consensus       899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~-tVIiISHD~e~v------~~l~DrVivL  971 (986)
T 2iw3_A          899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG-GVIIITHSAEFT------KNLTEEVWAV  971 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSS-EEEEECSCHHHH------TTTCCEEECC
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCC-EEEEEECCHHHH------HHhCCEEEEE
Confidence            346889999999999999988888888      777777777777766643 777789988875      4789999999


Q ss_pred             CCCCHH
Q 043263          257 AEGKLD  262 (286)
Q Consensus       257 ~~G~i~  262 (286)
                      ++|++.
T Consensus       972 ~~G~Iv  977 (986)
T 2iw3_A          972 KDGRMT  977 (986)
T ss_dssp             BTTBCC
T ss_pred             ECCEEE
Confidence            999763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.53  E-value=3.9e-17  Score=153.29  Aligned_cols=170  Identities=14%  Similarity=0.138  Sum_probs=103.8

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-CcceeeeC
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~~~~  144 (286)
                      .++++|+++.|+. .|..+++.+.+ |++++|+||||||||||+++|+|++.            |..|++. ...+.++.
T Consensus       287 ~l~~~~l~~~~~~~~l~~~~~~i~~-Ge~~~i~G~NGsGKSTLlk~l~Gl~~------------p~~G~i~~~~~i~~v~  353 (538)
T 1yqt_A          287 LVTYPRLVKDYGSFRLEVEPGEIKK-GEVIGIVGPNGIGKTTFVKMLAGVEE------------PTEGKIEWDLTVAYKP  353 (538)
T ss_dssp             EEEECCEEEEETTEEEEECCEEEET-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSBCCCCCCCCEEEEC
T ss_pred             EEEEeeEEEEECCEEEEeCccccCC-CCEEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECceEEEEe
Confidence            4778889888875 57777777787 99999999999999999999999986            3344311 11111111


Q ss_pred             HHHHHHHhhccchhhhheec-ccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-----
Q 043263          145 KEEFLQMVDKNELLEYALVY-GDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-----  209 (286)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-----  209 (286)
                      ++..  ........+..... ...+ ...+.+.++         ..+....+++|++||+.+|++++.+|+++|+     
T Consensus       354 Q~~~--~~~~~tv~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~  430 (538)
T 1yqt_A          354 QYIK--ADYEGTVYELLSKIDASKL-NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA  430 (538)
T ss_dssp             SSCC--CCCSSBHHHHHHHHHHHHH-TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred             cCCc--CCCCCcHHHHHHhhhccCC-CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence            1000  00000000000000 0000 001111111         1222345788999999999999988888777     


Q ss_pred             -EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 -LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 -ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                       ||+.+...+.+.|.+.   .+.+...++|+++..      ...||+|+++++
T Consensus       431 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~------~~~~drv~vl~~  477 (538)
T 1yqt_A          431 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLMVFEG  477 (538)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH------HHHCSEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence             6666666666665542   244777889988875      367999999874

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.53  E-value=4.3e-14  Score=129.22  Aligned_cols=162  Identities=14%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhh
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEY  160 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~  160 (286)
                      +..|....+..+..|+|+||+|+|   |++.|...++.....  .+|| |+.|+.+|.+|+|                  
T Consensus       213 YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s--~~TR-pR~gE~dG~~Y~F------------------  268 (468)
T 3shw_A          213 YERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQI--AKSE-PRDAGTDQRSSGI------------------  268 (468)
T ss_dssp             EEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE--CCCB-C----------CB------------------
T ss_pred             cceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceee--ecCC-CCCcccccccCCc------------------
Confidence            344433334457889999999999   888887766533222  3588 9999999998876                  


Q ss_pred             heecccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043263          161 ALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATA  240 (286)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~  240 (286)
                               ++.+.+++.+++|..++++.+.|.+..++... ..+++||+.||+.+.|.++.......+.+.+..+++.+
T Consensus       269 ---------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~-~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a  338 (468)
T 3shw_A          269 ---------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ-WYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS  338 (468)
T ss_dssp             ---------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTT-CCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHH
T ss_pred             ---------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcC-CCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence                     47778999999999999999999998887654 45699999999999997643332333445566666665


Q ss_pred             HH-HhhccCCCcEEEECCCCCH-HHHHHHHHHHHHHHHhc
Q 043263          241 RE-EVQHVKNFDYVVVNAEGKL-DSAVKLVESVIDAEKAK  278 (286)
Q Consensus       241 ~~-~~~~~~~~d~viv~~~G~i-~~~~~~l~~~i~~~~~~  278 (286)
                      .. +..+...+|.||+|++  + ++++++|..+|..++..
T Consensus       339 ~~~e~~~~~~fD~vIvNdd--l~d~a~~~L~~ii~~~~~~  376 (468)
T 3shw_A          339 HKLRKNNHHLFTTTINLNS--MNDGWYGALKEAIQQQQNQ  376 (468)
T ss_dssp             HHHHHHHGGGCSEEEECBT--TBCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhhccCCEEEECCC--cHHHHHHHHHHHHHHhcCC
Confidence            33 3445678999999887  8 58999999999988754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.53  E-value=7.9e-17  Score=152.90  Aligned_cols=170  Identities=15%  Similarity=0.151  Sum_probs=103.7

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcC-CcceeeeC
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVN-GKDYFFVS  144 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~-g~~~~~~~  144 (286)
                      .++++|+++.|+. .|+.+++.+.+ |++++|+||||||||||+++|+|++.            |..|++. ...+.++.
T Consensus       357 ~l~~~~l~~~~~~~~l~~~~~~v~~-Gei~~i~G~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~~~i~~v~  423 (607)
T 3bk7_A          357 LVEYPRLVKDYGSFKLEVEPGEIRK-GEVIGIVGPNGIGKTTFVKMLAGVEE------------PTEGKVEWDLTVAYKP  423 (607)
T ss_dssp             EEEECCEEEECSSCEEEECCEEEET-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSBSCCCCCCCEEEEC
T ss_pred             EEEEeceEEEecceEEEecccccCC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEEeeEEEEEe
Confidence            4778899998875 56777777787 99999999999999999999999986            4444421 11111111


Q ss_pred             HHHHHHHhhccchhhhheec-ccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-----
Q 043263          145 KEEFLQMVDKNELLEYALVY-GDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-----  209 (286)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-----  209 (286)
                      +..  .........++.... ...+ ...+.+.++         ..+....+++|++||+.+|++++.+|+++|+     
T Consensus       424 Q~~--~~~~~~tv~e~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~  500 (607)
T 3bk7_A          424 QYI--KAEYEGTVYELLSKIDSSKL-NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA  500 (607)
T ss_dssp             SSC--CCCCSSBHHHHHHHHHHHHH-HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred             cCc--cCCCCCcHHHHHHhhhccCC-CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence            100  000000000000000 0000 001111111         1222346888999999999999988887777     


Q ss_pred             -EecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 -LAAESEMALVERLVER---KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 -ld~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                       ||+.+...+.+.|.+.   .+.+...++|++...      ...||+|+++++
T Consensus       501 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~------~~~adrv~vl~~  547 (607)
T 3bk7_A          501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLIVFEG  547 (607)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHCSEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEcC
Confidence             6666566666655542   244777789988875      367999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.51  E-value=3.7e-16  Score=148.10  Aligned_cols=165  Identities=13%  Similarity=0.091  Sum_probs=98.6

Q ss_pred             HhHHHHhcc---cccCCCCCCCCCC-----eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC-cCCccee
Q 043263           71 RSLEASLGH---AFDSNPVCPPPNP-----LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE-VNGKDYF  141 (286)
Q Consensus        71 ~~v~~~~~~---~l~~~~~~~~~~g-----~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~-~~g~~~~  141 (286)
                      .++++.|+.   .+.++++.+.+ |     ++++|+||||||||||+++|+|++.            |..|+ +.+..+.
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~-G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~------------p~~G~~~~~~~i~  416 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEE-GEFSDSEILVMMGENGTGKTTLIKLLAGALK------------PDEGQDIPKLNVS  416 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECC-EECCTTCEEEEESCTTSSHHHHHHHHHTSSC------------CSBCCCCCSCCEE
T ss_pred             cceeEEecCcccccCceEEEEec-CccccceEEEEECCCCCcHHHHHHHHhcCCC------------CCCCcCccCCcEE
Confidence            456667754   56777777766 5     7899999999999999999999986            44443 1121221


Q ss_pred             eeCHHHHHHHhhccchhhhh--eecccccCccHHHHHHH---------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE-
Q 043263          142 FVSKEEFLQMVDKNELLEYA--LVYGDYKGIPKKQIREY---------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF-  209 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~---------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il-  209 (286)
                      ++.+.. . ........++.  ......  ...+...++         .......+++|++||+++|++++.+|+++|+ 
T Consensus       417 ~~~q~~-~-~~~~~tv~e~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          417 MKPQKI-A-PKFPGTVRQLFFKKIRGQF--LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             EECSSC-C-CCCCSBHHHHHHHHCSSTT--TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             Eecccc-c-ccCCccHHHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            111100 0 00000000000  000000  011111111         1223356889999999999999988887777 


Q ss_pred             -----EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          210 -----LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       210 -----ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                           ||+.+...+.+.|.+   ..+.+...++|+++..      ...||+|+++++
T Consensus       493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~------~~~aDrvivl~~  543 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA------TYLADKVIVFEG  543 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH------HHHCSEEEECEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEeC
Confidence                 666555555554443   2345778889998875      367999999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.49  E-value=8.4e-17  Score=140.01  Aligned_cols=150  Identities=13%  Similarity=0.007  Sum_probs=92.5

Q ss_pred             hHHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263           66 KIELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS  144 (286)
Q Consensus        66 ~~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~  144 (286)
                      ..++++||+|.|+. +|+++++.+++ |++++|+||||||||||+++|++++   .+.+...  .++.      .     
T Consensus       100 ~~i~~~~vs~~y~~~vL~~vsl~i~~-Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~--v~q~------~-----  162 (305)
T 2v9p_A          100 TFFNYQNIELITFINALKLWLKGIPK-KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF--ANHK------S-----  162 (305)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTCTT-CSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG--GGTT------S-----
T ss_pred             CeEEEEEEEEEcChhhhccceEEecC-CCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE--ecCc------c-----
Confidence            45899999999964 68899999998 9999999999999999999999986   2222100  0000      0     


Q ss_pred             HHHHHHHhhccchhhhheecc-cccCccHHHHHHHHhcC--CcEEEEeCHHHHHHHHHHhCCCcEEEE--EecCCHHHHH
Q 043263          145 KEEFLQMVDKNELLEYALVYG-DYKGIPKKQIREYMAKG--YDIVLRVDIQGARTLRRILGDSAVFVF--LAAESEMALV  219 (286)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~g--~~~v~~~~~q~v~iaral~~~~~~~Il--ld~~~~~~l~  219 (286)
                            .+..+.+.+++..+. .......+.+...++.+  ...+++|++||   ||+++.+|+++|.  ||+.++..+.
T Consensus       163 ------~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~  233 (305)
T 2v9p_A          163 ------HFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYL  233 (305)
T ss_dssp             ------GGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGG
T ss_pred             ------ccccccHHHHhhccCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHH
Confidence                  000111121111111 00000011122212222  24688999999   9999999999987  7777655442


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          220 ERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       220 ~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                                  .++|+++.       ...||+| ++++|++
T Consensus       234 ------------~ltH~~~~-------~~~aD~i-vl~~G~i  255 (305)
T 2v9p_A          234 ------------YLHSRVQT-------FRFEQPC-TDESGEQ  255 (305)
T ss_dssp             ------------GGTTTEEE-------EECCCCC-CCC---C
T ss_pred             ------------HHhCCHHH-------HHhCCEE-EEeCCEE
Confidence                        13666554       5789999 9998876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=1.2e-12  Score=107.20  Aligned_cols=172  Identities=15%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE  159 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~  159 (286)
                      .++++++.+.+ |++|+|+|++||||||+++.|++.++                    ..  +++.+.+........+.+
T Consensus        14 ~~~~~~~~~~~-~~~i~l~G~~GsGKsTl~~~La~~l~--------------------~~--~i~~d~~~~~~~g~~i~~   70 (199)
T 3vaa_A           14 GTENLYFQSNA-MVRIFLTGYMGAGKTTLGKAFARKLN--------------------VP--FIDLDWYIEERFHKTVGE   70 (199)
T ss_dssp             ----------C-CCEEEEECCTTSCHHHHHHHHHHHHT--------------------CC--EEEHHHHHHHHHTSCHHH
T ss_pred             CCCceeEecCC-CCEEEEEcCCCCCHHHHHHHHHHHcC--------------------CC--EEcchHHHHHHhCCcHHH
Confidence            46666666665 99999999999999999999998763                    11  122222111111111100


Q ss_pred             hheeccc-ccCccHHHHHHHHhcCCcEEEEe---CHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH-Hhc------CC
Q 043263          160 YALVYGD-YKGIPKKQIREYMAKGYDIVLRV---DIQGARTLRRILGDSAVFVFLAAESEMALVERLV-ERK------TE  228 (286)
Q Consensus       160 ~~~~~~~-~~~~~~~~i~~~~~~g~~~v~~~---~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~-~r~------~~  228 (286)
                      .....+. .+......+...+..+...++..   -.......+.+ ..+..+|+|+++ .+.+.+|+. .+.      +.
T Consensus        71 ~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~~l-~~~~~vi~L~~~-~e~l~~Rl~~~~~~Rp~~~~~  148 (199)
T 3vaa_A           71 LFTERGEAGFRELERNMLHEVAEFENVVISTGGGAPCFYDNMEFM-NRTGKTVFLNVH-PDVLFRRLRIAKQQRPILQGK  148 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGGSTTHHHHH-HHHSEEEEEECC-HHHHHHHHHHTGGGCGGGTTC
T ss_pred             HHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEccHHHHHHH-HcCCEEEEEECC-HHHHHHHHhcCCCCCCCcCCC
Confidence            0000000 00001111222233444555541   11111122222 235789999987 888889998 331      22


Q ss_pred             CHHHHHHHHHHHHHHh-hccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          229 NREELLVRIATAREEV-QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       229 t~~~i~~rl~~~~~~~-~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      +...+..++.....+. .....+|.+|.+++.++++++++|.+.++...
T Consensus       149 ~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          149 EDDELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            4444444444444322 22234898886665589999999999887653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.45  E-value=1.5e-12  Score=109.20  Aligned_cols=176  Identities=17%  Similarity=0.169  Sum_probs=100.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch-hh---hheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL-LE---YALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~-~~---~~~~~~~  166 (286)
                      +|.+|+|.|++||||||+++.|++.+.. ++.+. .++.|..+.         ..+.++..+.++.. ..   ...+..+
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~-~~~~p~~~~---------~g~~i~~~~~~~~~~~~~~~~ll~~a~   93 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI-MTREPGGVP---------TGEEIRKIVLEGNDMDIRTEAMLFAAS   93 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE-EECTTTTCH---------HHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce-eecCCCCCc---------hHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            5999999999999999999999998764 33332 223332111         12233343332221 00   0001111


Q ss_pred             ccCccHHHHHHHHhcCCcEEEE----------e-----CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcC-
Q 043263          167 YKGIPKKQIREYMAKGYDIVLR----------V-----DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKT-  227 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~----------~-----~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~-  227 (286)
                      .+....+.+...+..|..++++          +     ....+..+..+   ...|+++|+||.+ .+.+.+|+.+|+. 
T Consensus        94 r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R~~~  172 (229)
T 4eaq_A           94 RREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRD  172 (229)
T ss_dssp             HHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCC
Confidence            0000111234556678778887          3     22222222222   2478999999997 7888899988742 


Q ss_pred             ---CC--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          228 ---EN--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       228 ---~t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                         ..  ...+..++.....+.........++++.+++++++.++|.+.+.....+
T Consensus       173 ~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~~  228 (229)
T 4eaq_A          173 QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK  228 (229)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHTC
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence               11  3345566665544433222235677788889999999999999876543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.44  E-value=1.3e-15  Score=149.85  Aligned_cols=166  Identities=16%  Similarity=0.129  Sum_probs=105.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHh-ccCcceeeeeecccCCCCCCcCCcc---ee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKD---YF  141 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~i~~~~r~~~~G~~~g~~---~~  141 (286)
                      +...|+++.|+.  .|+++++.+.+ |++++|+||||||||||+++|++ ....  ....   .....+.+....   +.
T Consensus       436 L~~~~ls~~yg~~~iL~~vsl~I~~-Ge~v~LiGpNGsGKSTLLk~LagG~i~g--~~~~---~~~~~~~v~q~~~~~~~  509 (986)
T 2iw3_A          436 LCNCEFSLAYGAKILLNKTQLRLKR-ARRYGICGPNGCGKSTLMRAIANGQVDG--FPTQ---EECRTVYVEHDIDGTHS  509 (986)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHHTCSTT--CCCT---TTSCEEETTCCCCCCCT
T ss_pred             eEEeeEEEEECCEEeEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCcCC--Cccc---cceeEEEEccccccccc
Confidence            555688999986  78999999998 99999999999999999999985 2110  0000   000000011000   00


Q ss_pred             eeCHHHHHHHhhccchhhhheecccccCccHHHHHHH----------HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEE--
Q 043263          142 FVSKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREY----------MAKGYDIVLRVDIQGARTLRRILGDSAVFVF--  209 (286)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~g~~~v~~~~~q~v~iaral~~~~~~~Il--  209 (286)
                      ..+.            .++...  ..++. .+.+.+.          ..+....+++|++||+.+|++++.+|+++|+  
T Consensus       510 ~ltv------------~e~l~~--~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE  574 (986)
T 2iw3_A          510 DTSV------------LDFVFE--SGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE  574 (986)
T ss_dssp             TSBH------------HHHHHT--TCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred             CCcH------------HHHHHH--hhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            0011            111000  00011 2222222          2233346788999999999999988888888  


Q ss_pred             ----EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          210 ----LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       210 ----ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                          ||+.+...+.+.|.+ .+.+...++|++...      ...||+|+++++|++
T Consensus       575 PTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l------~~~adrii~L~~G~i  623 (986)
T 2iw3_A          575 PTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFL------DNVCEYIINYEGLKL  623 (986)
T ss_dssp             TTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHH------HHHCSEEEEEETTEE
T ss_pred             CccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHH------HHhCCEEEEEECCee
Confidence                777777778777777 445777889988875      357999999988865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.44  E-value=2.9e-12  Score=105.07  Aligned_cols=174  Identities=21%  Similarity=0.325  Sum_probs=97.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC--CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecc
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP--MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYG  165 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~--~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (286)
                      .+.++.+|+|+|++||||||+++.|+..++...++.....+.  ...|.    .+    .+.+...+.++.+.....   
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~----~~----~~~i~~~~~~g~~~~~~~---   79 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGS----QY----GELIKNCIKEGQIVPQEI---   79 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTC----SC----HHHHHHHHHTTCCCCHHH---
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCC----HH----HHHHHHHHHcCCcCCHHH---
Confidence            344578999999999999999999997764322222211110  00111    10    111222222221111100   


Q ss_pred             cccCccHHHHHHHHhcC-CcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHH
Q 043263          166 DYKGIPKKQIREYMAKG-YDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENREELLV  235 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g-~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~  235 (286)
                       .+....+.+...+..| ..+++++-   ......+...+..++++|+|+++ .+.+.+|+.+|+.      .+.+.+..
T Consensus        80 -~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~Rl~~R~~~~~~~~~~~e~~~~  157 (203)
T 1ukz_A           80 -TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKK  157 (203)
T ss_dssp             -HHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred             -HHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHH
Confidence             0111233444555666 45666653   22223344455567889999997 7788899887642      24666766


Q ss_pred             HHHHHHHH----hhccCCCcEEE-ECCCCCHHHHHHHHHHHHHH
Q 043263          236 RIATAREE----VQHVKNFDYVV-VNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       236 rl~~~~~~----~~~~~~~d~vi-v~~~G~i~~~~~~l~~~i~~  274 (286)
                      |+......    .++...+|.++ ++++++++++.++|.+++..
T Consensus       158 r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          158 RFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            65543322    12234577654 56778999999999998865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.41  E-value=7.6e-14  Score=122.26  Aligned_cols=52  Identities=23%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             hhHHHhHhHHHHhcccccCCC----------------------CC-CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           65 NKIELLRSLEASLGHAFDSNP----------------------VC-PPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~~l~~~~----------------------~~-~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..|.+++|++.|+..+..++                      .. +. +|+++||+||||||||||+++|++++.
T Consensus        41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRP-VPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSC-CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCC-CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            445888889988864222221                      22 44 499999999999999999999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.41  E-value=1.2e-11  Score=98.36  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             HHHHHH--hcCCcEEEEeC--HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC----CCHHHHHHHHHH--HHHH
Q 043263          174 QIREYM--AKGYDIVLRVD--IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT----ENREELLVRIAT--AREE  243 (286)
Q Consensus       174 ~i~~~~--~~g~~~v~~~~--~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~----~t~~~i~~rl~~--~~~~  243 (286)
                      .+.+.+  ..+..+++++-  ......++..+..+..+|+|+++ .+.+.+|+..|++    .+.+.+.+++..  ....
T Consensus        68 ~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~  146 (179)
T 3lw7_A           68 LCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSP-PKIRYKRMIERLRSDDSKEISELIRRDREELKLGI  146 (179)
T ss_dssp             HHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECC-HHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECC-HHHHHHHHHhccCCCCcchHHHHHHHHHhhhccCh
Confidence            344455  55667888764  22334455666677789999987 7888899998865    467777777643  2222


Q ss_pred             hhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          244 VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ......+|.+|.++ |+++++.++|.+++...
T Consensus       147 ~~~~~~ad~vId~~-~~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          147 GEVIAMADYIITND-SNYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             HHHHHTCSEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred             HhHHHhCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence            33346789888654 69999999999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.40  E-value=2.3e-12  Score=104.79  Aligned_cols=172  Identities=20%  Similarity=0.315  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      ++.+|+|+|++||||||+++.|+..++...++.....+. +..|.    .    ....+...+..+......    ..+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~----~----~~~~i~~~~~~g~~~~~~----~~~~   75 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGS----A----RGKKLSEIMEKGQLVPLE----TVLD   75 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTC----H----HHHHHHHHHHTTCCCCHH----HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCC----h----HHHHHHHHHHcCCcCCHH----HHHH
Confidence            478999999999999999999998664222221111110 00000    0    011112222112111110    0111


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATA  240 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~  240 (286)
                      ...+.+...+..|..+++++..   ..+......+..+..+|+|+++ .+.+.+|+.+|+.      .+...+..|+..+
T Consensus        76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~  154 (196)
T 2c95_A           76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAG-PETMTQRLLKRGETSGRVDDNEETIKKRLETY  154 (196)
T ss_dssp             HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHccCCcCCCCCCCHHHHHHHHHHH
Confidence            1223344445567788888632   2222233344678899999987 7888899987752      2556677777766


Q ss_pred             HHHhhc----cCCCcEE-EECCCCCHHHHHHHHHHHHHHH
Q 043263          241 REEVQH----VKNFDYV-VVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       241 ~~~~~~----~~~~d~v-iv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ......    ...+|.+ +++++++++++.++|.++++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            544321    2235653 4566689999999999988753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.38  E-value=8.2e-12  Score=104.85  Aligned_cols=179  Identities=20%  Similarity=0.219  Sum_probs=104.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc----cch---hhhhee
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK----NEL---LEYALV  163 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~----~~~---~~~~~~  163 (286)
                      +|.+|+|.|++||||||+++.|...+...+..+..++|.|. |.    ++    .+.++..+..    ..+   .+...+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-~t----~~----g~~ir~~l~~~~~~~~~~~~~e~lLf   96 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GT----LL----AEKLRALVKEEHPGEELQDITELLLV   96 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SS----HH----HHHHHHHHHSCCTTSCCCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-CC----HH----HHHHHHHHhhCCCcccCCHHHHHHHH
Confidence            38899999999999999999999877644444334455553 22    11    2334444321    111   122223


Q ss_pred             cccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHh
Q 043263          164 YGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVER  225 (286)
Q Consensus       164 ~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r  225 (286)
                      +.+.+....+.+..++..|..+++|-               +...+..+...   ...|+++|+||.+ .+...+|+.+|
T Consensus        97 ~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~~R  175 (236)
T 3lv8_A           97 YAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERARGR  175 (236)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence            33322233345666778888888762               11222222221   2479999999998 77888999877


Q ss_pred             cCC---C--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          226 KTE---N--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       226 ~~~---t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      +..   .  ......++.....+.... ..+.++++.+++++++.++|.++++....+..
T Consensus       176 ~~~dr~E~~~~~~~~rv~~~y~~la~~-~~~~~vIDa~~sieeV~~~I~~~l~~~l~~~~  234 (236)
T 3lv8_A          176 GELDRIEKMDISFFERARERYLELANS-DDSVVMIDAAQSIEQVTADIRRALQDWLSQVN  234 (236)
T ss_dssp             -CCCTTTTSCHHHHHHHHHHHHHHHHH-CTTEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHHH-CCCEEEEeCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            531   1  134555555544333211 12367778889999999999999998776543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.38  E-value=1.7e-14  Score=139.03  Aligned_cols=66  Identities=15%  Similarity=0.076  Sum_probs=49.1

Q ss_pred             cEEEEeCHHHHHHHHHHhCCCc--EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          184 DIVLRVDIQGARTLRRILGDSA--VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~--~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                      ..+++|++||+++||+++.+|+  ++|+      ||+.+...+.+.|.+.  .+.|...++|+++..       ..||+|
T Consensus       201 ~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-------~~~d~i  273 (670)
T 3ux8_A          201 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM-------LAADYL  273 (670)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH-------HHCSEE
T ss_pred             ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-------hhCCEE
Confidence            4577899999999999998876  6666      6666666666655432  244778889988753       459999


Q ss_pred             EEC
Q 043263          254 VVN  256 (286)
Q Consensus       254 iv~  256 (286)
                      +++
T Consensus       274 i~l  276 (670)
T 3ux8_A          274 IDI  276 (670)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            998

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.36  E-value=4.8e-12  Score=106.99  Aligned_cols=166  Identities=16%  Similarity=0.176  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      ++.+|+|+||+||||||+++.|+..++..++++.++.|. ...|..        ....+...+..+.++.+..       
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~--------~g~~i~~~~~~g~~~~~~~-------   92 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE--------LGLKIKNIINEGKLVDDQM-------   92 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH--------HHHHHHHHHHTTCCCCHHH-------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch--------HHHHHHHHHhcCCCCcHHH-------
Confidence            378999999999999999999998776545544444332 111111        0112233333333322211       


Q ss_pred             ccHHHHHHHHh---cCCcEEEEeCHHHHHHHHHH-------hCCCcEEEEEecCCHHHHHHHHHHhc-------------
Q 043263          170 IPKKQIREYMA---KGYDIVLRVDIQGARTLRRI-------LGDSAVFVFLAAESEMALVERLVERK-------------  226 (286)
Q Consensus       170 ~~~~~i~~~~~---~g~~~v~~~~~q~v~iaral-------~~~~~~~Illd~~~~~~l~~rl~~r~-------------  226 (286)
                       ....+...+.   .+...++++..+.+..+..+       -..++.+|+|+++ .+.+.+|+..|+             
T Consensus        93 -~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~  170 (243)
T 3tlx_A           93 -VLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIF  170 (243)
T ss_dssp             -HHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTT
T ss_pred             -HHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCccccccc
Confidence             1112233332   25567887744333222221       1357788999997 788889999764             


Q ss_pred             --------------------CCCHHHHHHHHHHHHHHhhcc----CCC-cEEEECCCCCHHHHHHHHHHHHH
Q 043263          227 --------------------TENREELLVRIATAREEVQHV----KNF-DYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       227 --------------------~~t~~~i~~rl~~~~~~~~~~----~~~-d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                                          ..+.+.+.+|+..+..+...+    ... -.+.++.+++++++.++|.+++.
T Consensus       171 ~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          171 NPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                                236788999999877654321    222 24556777899999999998875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.33  E-value=2.7e-12  Score=105.56  Aligned_cols=72  Identities=13%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH----HHHHHHHHHHHHHHh
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD----SAVKLVESVIDAEKA  277 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~----~~~~~l~~~i~~~~~  277 (286)
                      .+.+|+|+++ .+.+.+|+.+|.+.+.+.+..++..+.+..+....||.+|. ++|+++    ++.+++.+++.....
T Consensus       124 ~d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~~~ad~vId-n~~~~~~~~~~~~~~i~~~~~~~~~  199 (206)
T 1jjv_A          124 CDRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVIN-NDAELAQNLPHLQQKVLELHQFYLQ  199 (206)
T ss_dssp             CSEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHHHHCSEEEE-CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEE-CCCCccccHHHHHHHHHHHHHHHHH
Confidence            4788999987 78888999888666888888888765443343457897664 456999    999999998876554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.33  E-value=1.2e-12  Score=110.89  Aligned_cols=79  Identities=15%  Similarity=0.282  Sum_probs=45.7

Q ss_pred             CcEEEEEecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHH--HH----hhccCCCcEEE---ECCCCCHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVER--KTENREELLVRIATAR--EE----VQHVKNFDYVV---VNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~--~~----~~~~~~~d~vi---v~~~G~i~~~~~~l~~~i  272 (286)
                      ....|+++++....+.+++...  .+.+.+.+..++..+.  ..    .+....||.||   +++++.++++.+++.+++
T Consensus       154 ~~~~i~v~th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~  233 (245)
T 2jeo_A          154 FHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDIL  233 (245)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHH
Confidence            3677888887445554444432  1447777776665422  11    13357899888   244568999999999988


Q ss_pred             HHHHhccccc
Q 043263          273 DAEKAKVRQR  282 (286)
Q Consensus       273 ~~~~~~~~~~  282 (286)
                      +.....++|+
T Consensus       234 ~~~~~~~~~~  243 (245)
T 2jeo_A          234 NGDICKWHRG  243 (245)
T ss_dssp             HTCC------
T ss_pred             hcchhhhhcC
Confidence            7655555554

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.33  E-value=4e-12  Score=105.37  Aligned_cols=172  Identities=18%  Similarity=0.255  Sum_probs=96.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ++++|.|+||+||||+|+++.|+..+...+++..+.-|..-   -.+.+    ....+...+..+.++....+.    .+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i---~~~t~----lg~~~~~~~~~G~lVpde~~~----~l   96 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEV---QSGSP----KGKELKAMMERGELVPLEVVL----AL   96 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHH---TTCCH----HHHHHHHHHHHTCCCCHHHHH----HH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHH---HcCCc----hHHHHHHHHhcCCCCCHHHHH----HH
Confidence            47899999999999999999999887533333221111000   00000    001112222222222211110    11


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHH---HHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHHH
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLR---RILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATAR  241 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iar---al~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~~  241 (286)
                      ..+.+.+........+++|-+.-+..|.   .....+..+|+|+.+ .+.+.+|+..|..      .+.+.+.+|+..+.
T Consensus        97 v~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~-~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~  175 (217)
T 3umf_A           97 LKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVS-EEVMRKRLLKRAETSNRVDDNEETIVKRFRTFN  175 (217)
T ss_dssp             HHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHSCC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCC-HHHHHHHHhcccccCCCCCCCHHHHHHHHHHHH
Confidence            1122222223344678888542233332   233478889999997 8888899976632      14577889988766


Q ss_pred             HHhhc----c-CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          242 EEVQH----V-KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       242 ~~~~~----~-~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .+..+    . .....+.++.++++++++++|.+.+++
T Consensus       176 ~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          176 ELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            54322    2 233455677788999999999998875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.32  E-value=5.9e-12  Score=104.20  Aligned_cols=165  Identities=16%  Similarity=0.191  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|+|+|++||||||+++.|+..++...++.....|....+   +.+    ....+...+..+.+..+        .....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~--------~~~~~   66 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKN---GTE----LGLKAKSFMDQGNLVPD--------EVTIG   66 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHT---TCH----HHHHHHHHHHHTCCCCH--------HHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCH--------HHHHH
Confidence            5899999999999999999876642222222111110000   000    00111111111111111        01112


Q ss_pred             HHHHHHh---cCCcEEEEeCH---HHHHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHh------------------
Q 043263          174 QIREYMA---KGYDIVLRVDI---QGARTLRRIL----GDSAVFVFLAAESEMALVERLVER------------------  225 (286)
Q Consensus       174 ~i~~~~~---~g~~~v~~~~~---q~v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r------------------  225 (286)
                      .+.+.+.   .+..+++++..   .....+...+    ..++.+|+|+++ .+.+.+|+.+|                  
T Consensus        67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~  145 (216)
T 3fb4_A           67 IVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPA  145 (216)
T ss_dssp             HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred             HHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCC
Confidence            2333332   25677887532   2222222222    136789999997 78888999987                  


Q ss_pred             ---------------cCCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          226 ---------------KTENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       226 ---------------~~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                     ...+.+.+..|+..+.......     .....+.++.+++++++.++|.+++..
T Consensus       146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence                           3347788888888766543221     122346667788999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.32  E-value=3.3e-11  Score=99.73  Aligned_cols=177  Identities=15%  Similarity=0.131  Sum_probs=103.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc---h---hhhheec
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE---L---LEYALVY  164 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~---~---~~~~~~~  164 (286)
                      +|.+|+|.|++||||||+++.|...+...+..+ ..+|.|. |.    ++    .+.++..+.++.   +   .+...+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~-~~----~~----g~~i~~~l~~~~~~~~~~~~~~llf~   74 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPG-GT----PL----AERIRELLLAPSDEPMAADTELLLMF   74 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSC-SS----HH----HHHHHHHHHSCCSSCCCHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCC-CC----HH----HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence            389999999999999999999998775433333 2344452 11    11    123343333221   1   1111222


Q ss_pred             ccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc
Q 043263          165 GDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERK  226 (286)
Q Consensus       165 ~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~  226 (286)
                      .+.+....+.+..++..|..+++|-               +...+..+..+   ...|+++|+||.+ .+...+|+.+|+
T Consensus        75 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~Ri~~R~  153 (213)
T 4edh_A           75 AARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLARAAARG  153 (213)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence            2222222334566677888777752               12222222222   2579999999997 788889998875


Q ss_pred             CC---C--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          227 TE---N--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       227 ~~---t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      +.   .  ......++...............++++.+++++++.++|.+.+.....+
T Consensus       154 ~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~  210 (213)
T 4edh_A          154 RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER  210 (213)
T ss_dssp             SCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            31   1  1234444444433322112234677788889999999999999876543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.32  E-value=4.8e-11  Score=98.35  Aligned_cols=180  Identities=13%  Similarity=0.129  Sum_probs=93.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhh---hheecc
Q 043263           90 PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLE---YALVYG  165 (286)
Q Consensus        90 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~---~~~~~~  165 (286)
                      .+|.+|+|+|++||||||+++.|+..+...++.+. ..+.|..+.    .+    ...++..+..+ .+-.   ...+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~~~~~----~~----~~~i~~~~~~~~~~~~~~~~~~~~~   77 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFPERST----EI----GKLLSSYLQKKSDVEDHSVHLLFSA   77 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSCTTS----HH----HHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCCCCCC----cH----HHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            35889999999999999999999987642222221 112221111    00    01111211111 0100   000000


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCH------H------HHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc-CCC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDI------Q------GARTLRRI---LGDSAVFVFLAAESEMALVERLVERK-TEN  229 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~------q------~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~-~~t  229 (286)
                      ..+.. .+.+...+..+..++++...      +      ....+..+   ...++.+|+|+++ .+.+.+|+..+. ...
T Consensus        78 ~r~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~~  155 (215)
T 1nn5_A           78 NRWEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYE  155 (215)
T ss_dssp             HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTC
T ss_pred             HHHHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccc
Confidence            00111 12455556677777777311      0      01122222   1257889999987 778888886431 222


Q ss_pred             HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      ...+..++..+..+......++.++++++++++++.++|.+++.......+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~~~  206 (215)
T 1nn5_A          156 NGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATAT  206 (215)
T ss_dssp             SHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhhcc
Confidence            234445555544443322335666677778999999999999988765443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.31  E-value=1.3e-11  Score=101.10  Aligned_cols=157  Identities=22%  Similarity=0.209  Sum_probs=88.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      +.+|+|+|++||||||+++.|++.++...+              ++.++.  ........ ..+.........     ..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i--------------~~d~~~--~~~~~~~~-~~g~~~~~~~~~-----~~   75 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI--------------EGDALH--PPENIRKM-SEGIPLTDDDRW-----PW   75 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEE--------------EGGGGC--CHHHHHHH-HHTCCCCHHHHH-----HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEE--------------eCCcCc--chhhHHHH-hcCCCCCchhhH-----HH
Confidence            578999999999999999999987642111              111111  11111111 001000000000     01


Q ss_pred             HHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhc
Q 043263          172 KKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQH  246 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~~  246 (286)
                      ...+...+..+..+++++.   ......++.....+..+|+|+++ .+.+.+|+.+|.+.  ....+...+..    .+.
T Consensus        76 ~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~----~~~  150 (202)
T 3t61_A           76 LAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQTQLET----LED  150 (202)
T ss_dssp             HHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHHHHHH----CCC
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHHHHHh----cCC
Confidence            1233444566777777643   33344455555555788999987 88889999988642  43333332222    221


Q ss_pred             c--CCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          247 V--KNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       247 ~--~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      .  ..++.+| +.+++++++.++|.++++...
T Consensus       151 ~~~~~~~~~I-d~~~~~~e~~~~I~~~l~~~~  181 (202)
T 3t61_A          151 PRGEVRTVAV-DVAQPLAEIVREALAGLARLA  181 (202)
T ss_dssp             CTTSTTEEEE-ESSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEE-eCCCCHHHHHHHHHHHHHHhh
Confidence            1  2345554 555899999999999998653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=100.98  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=91.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeeccc-CCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSR-PMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r-~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +.+|+|+|++||||||+++.|+..++...++.....+ .+..    |.+.    ...+...+..+.......    ....
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~----~~~~----~~~i~~~~~~g~~~~~~~----~~~~   79 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS----ESER----SKLIRDIMERGDLVPSGI----VLEL   79 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH----TCHH----HHHHHHHHHTTCCCCHHH----HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHh----CCHH----HHHHHHHHHcCCcCCHHH----HHHH
Confidence            6789999999999999999999876422211110000 0000    0000    011111111111111000    0011


Q ss_pred             cHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHH
Q 043263          171 PKKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAR  241 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~  241 (286)
                      ..+.+...+..+..+++++-.   .....+...+..++.+|+|+++ .+.+.+|+.+|+..      +.+.+..|+..+.
T Consensus        80 ~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~  158 (199)
T 2bwj_A           80 LKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYY  158 (199)
T ss_dssp             HHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            122233333457778888532   1122223333467889999987 78888999887542      2345666665544


Q ss_pred             HHhh----ccCCCcE-EEECCCCCHHHHHHHHHHHHHHH
Q 043263          242 EEVQ----HVKNFDY-VVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       242 ~~~~----~~~~~d~-viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ....    ....++. ++++++++++++.++|.+.++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          159 RASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            4332    1222344 56677789999999999988653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.31  E-value=6.8e-12  Score=102.78  Aligned_cols=159  Identities=14%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|++++|+|+|||||||++++|++.++...              ++|.++.  ......... .+........... +..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--------------i~~d~~~--~~~~~~~~~-~g~~~~~~~~~~~-~~~   89 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--------------AEADAFH--SPENIATMQ-RGIPLTDEDRWPW-LRS   89 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--------------EEGGGGS--CHHHHHHHH-TTCCCCHHHHHHH-HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--------------Ecccccc--cHHHHHHHh-cCCCCCCcccccH-HHH
Confidence            489999999999999999999998763111              2233321  111111110 0000000000000 001


Q ss_pred             cHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhh
Q 043263          171 PKKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQ  245 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~  245 (286)
                      ....+...+..+..++++...   .....++.+. .+..+|+|+++ .+.+.+|+.+|.+.  +...+.    .+....+
T Consensus        90 ~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~~~~l~----~~~~~~~  163 (200)
T 4eun_A           90 LAEWMDARADAGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGP-AEVIKGRMSKREGHFMPASLLQ----SQLATLE  163 (200)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECC-HHHHHHHHTTCSCCSSCGGGHH----HHHHHCC
T ss_pred             HHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCC-HHHHHHHHHhcccCCCCHHHHH----HHHHHhC
Confidence            112233345566677776532   1122222222 24577889987 88899999887543  223332    2222222


Q ss_pred             cc--CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          246 HV--KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       246 ~~--~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ..  ..+|.+| +++++++++.++|.+++..
T Consensus       164 ~~~~~~~~~~I-d~~~~~~e~~~~I~~~l~~  193 (200)
T 4eun_A          164 ALEPDESGIVL-DLRQPPEQLIERALTWLDI  193 (200)
T ss_dssp             CCCTTSCEEEE-ETTSCHHHHHHHHHHHHCC
T ss_pred             CCCCCCCeEEE-ECCCCHHHHHHHHHHHHHh
Confidence            22  2355555 5567999999999888754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.31  E-value=1.6e-11  Score=101.23  Aligned_cols=69  Identities=14%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHH------hhccCCCcEEEECCCCC----HHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVER---KTENREELLVRIATAREE------VQHVKNFDYVVVNAEGK----LDSAVKLVE  269 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r---~~~t~~~i~~rl~~~~~~------~~~~~~~d~viv~~~G~----i~~~~~~l~  269 (286)
                      ..+..++||++.+..+.+++.+.   .+.+...+.|++..+...      .++...||.||.++ |+    ++.+.+++.
T Consensus       124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~-~~~~~~~~~~~~~i~  202 (211)
T 3asz_A          124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRG-GQNPVALEMLAAKAL  202 (211)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEST-TSCHHHHHHHHHHHT
T ss_pred             hcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCC-CcchHHHHHHHHHHH
Confidence            34889999998776676666532   245888888987655432      23346789988765 67    555555554


Q ss_pred             HHH
Q 043263          270 SVI  272 (286)
Q Consensus       270 ~~i  272 (286)
                      +++
T Consensus       203 ~~~  205 (211)
T 3asz_A          203 ARL  205 (211)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.30  E-value=4.2e-12  Score=107.63  Aligned_cols=187  Identities=13%  Similarity=0.077  Sum_probs=88.9

Q ss_pred             HHHhHhH-HHHh-cc--cccCCCCCCCC--CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcce
Q 043263           67 IELLRSL-EASL-GH--AFDSNPVCPPP--NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDY  140 (286)
Q Consensus        67 ~i~~~~v-~~~~-~~--~l~~~~~~~~~--~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~  140 (286)
                      .++++|+ ++.| +.  .|+++++.+.+  +|++|+|+|++||||||++++|++.+..                      
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~----------------------   74 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY----------------------   74 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC----------------------
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC----------------------
Confidence            4778888 8888 43  67777777764  3889999999999999999999987641                      


Q ss_pred             eeeCHHHHHHHhh-ccchhhhheecccc--cCccHHHHHHHHhc-CCcEEEEe-CHHHHHHHHHHhCCCcEEEEEecCCH
Q 043263          141 FFVSKEEFLQMVD-KNELLEYALVYGDY--KGIPKKQIREYMAK-GYDIVLRV-DIQGARTLRRILGDSAVFVFLAAESE  215 (286)
Q Consensus       141 ~~~~~~~~~~~i~-~~~~~~~~~~~~~~--~~~~~~~i~~~~~~-g~~~v~~~-~~q~v~iaral~~~~~~~Illd~~~~  215 (286)
                      .+++.+.+..... ...+.+....++..  .....+.+.+.... ...++..| ..-.-...+..+. ...+|||+++ .
T Consensus        75 ~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~-~~~vV~L~a~-~  152 (250)
T 3nwj_A           75 TFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMH-KGISIWLDVP-L  152 (250)
T ss_dssp             EEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHT-TSEEEEEECC-H
T ss_pred             cEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHh-CCcEEEEECC-H
Confidence            1122221111111 10110000011110  00111223333333 23333322 1111112233442 4789999997 7


Q ss_pred             HHHHHHHHHhc---C--CCH-------HHHHHHHHHHHHHh-hccCCCcEEE------------ECCCCCHHHHHHHHHH
Q 043263          216 MALVERLVERK---T--ENR-------EELLVRIATAREEV-QHVKNFDYVV------------VNAEGKLDSAVKLVES  270 (286)
Q Consensus       216 ~~l~~rl~~r~---~--~t~-------~~i~~rl~~~~~~~-~~~~~~d~vi------------v~~~G~i~~~~~~l~~  270 (286)
                      +.+.+|+.+++   +  ...       .....++.....+. .....+|.++            -.++.++++++++|.+
T Consensus       153 e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~  232 (250)
T 3nwj_A          153 EALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFE  232 (250)
T ss_dssp             HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHH
Confidence            88889987421   1  010       01122333333221 2234588888            2234489999999999


Q ss_pred             HHHHHHh
Q 043263          271 VIDAEKA  277 (286)
Q Consensus       271 ~i~~~~~  277 (286)
                      .+.....
T Consensus       233 ~i~~~~~  239 (250)
T 3nwj_A          233 QVQSYLE  239 (250)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9987653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.30  E-value=1.2e-10  Score=92.54  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-hhccCCCcEEEECCCC-CHHHHHHHHH
Q 043263          194 ARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREE-VQHVKNFDYVVVNAEG-KLDSAVKLVE  269 (286)
Q Consensus       194 v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~-~~~~~~~d~viv~~~G-~i~~~~~~l~  269 (286)
                      ...++..+..|..+|+|+++ .+.+.+|+.+|++.  .. ....++.....+ .+... ...++++.++ +++++.++|.
T Consensus        85 ~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~ev~~~I~  161 (173)
T 3kb2_A           85 LRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEG-KDIDSILELYREVMSNAG-LHTYSWDTGQWSSDEIAKDII  161 (173)
T ss_dssp             HHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCH-HHHHHHHHHHHHHHHTCS-SCEEEEETTTSCHHHHHHHHH
T ss_pred             HHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhh-hHHHHHHHHHHHHHhhcC-CCEEEEECCCCCHHHHHHHHH
Confidence            34444555578899999986 88888999886432  33 233333333333 22223 3444556654 8999999999


Q ss_pred             HHHHHHH
Q 043263          270 SVIDAEK  276 (286)
Q Consensus       270 ~~i~~~~  276 (286)
                      +.++...
T Consensus       162 ~~~~~~~  168 (173)
T 3kb2_A          162 FLVELEH  168 (173)
T ss_dssp             HHHHHGG
T ss_pred             HHHhCCC
Confidence            8887743

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.30  E-value=4.8e-12  Score=104.78  Aligned_cols=165  Identities=19%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      .|+|+|++||||||+++.|+..++...++.....|....+   +.+    ....+...+..+.+..+        .....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~--------~~~~~   66 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKE---ETP----LGLEAKSYIDKGELVPD--------EVTIG   66 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHT---TCH----HHHHHHHHHTTTCCCCH--------HHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCH--------HHHHH
Confidence            5899999999999999999877643233222211110000   000    00111111111111110        01112


Q ss_pred             HHHHHHh---cCCcEEEEeCH---HHHHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHh------------------
Q 043263          174 QIREYMA---KGYDIVLRVDI---QGARTLRRIL----GDSAVFVFLAAESEMALVERLVER------------------  225 (286)
Q Consensus       174 ~i~~~~~---~g~~~v~~~~~---q~v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r------------------  225 (286)
                      .+...+.   .+..+++++..   +....+...+    ..++.+|+|+++ .+.+.+|+.+|                  
T Consensus        67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~  145 (216)
T 3dl0_A           67 IVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGRRICSVCGTTYHLVFNPPK  145 (216)
T ss_dssp             HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTEEEETTTCCEEETTTBCCS
T ss_pred             HHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCCCcCCccCCccccccCCCc
Confidence            2333332   36677887532   2222222222    236789999997 67888999988                  


Q ss_pred             ---------------cCCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          226 ---------------KTENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       226 ---------------~~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                     ...+.+.+..|+..+.......     .....+.++.+++++++.++|.+++..
T Consensus       146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                           3457788889888665443221     111245667788999999999988864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.30  E-value=2.9e-11  Score=97.84  Aligned_cols=166  Identities=18%  Similarity=0.307  Sum_probs=90.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +.+|+|+|++||||||+++.|+..++...++.....+. +..|..        ....+...+..+.+...        ..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~--------~~~~i~~~~~~g~~~~~--------~~   69 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK--------DGEMIATMIKNGEIVPS--------IV   69 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT--------THHHHHHHHHTTCCCCH--------HH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH--------HHHHHHHHHHCCCCCCH--------HH
Confidence            57899999999999999999998654222222111110 101100        01112222211111100        01


Q ss_pred             cHHHHHHHHh--cCCcEEEEeCH---HHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHH
Q 043263          171 PKKQIREYMA--KGYDIVLRVDI---QGARTLRRILG---DSAVFVFLAAESEMALVERLVERKTE------NREELLVR  236 (286)
Q Consensus       171 ~~~~i~~~~~--~g~~~v~~~~~---q~v~iaral~~---~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~r  236 (286)
                      ....+.+.+.  .+..+++++..   .....+...+.   .++.+|+|+++ .+.+.+|+.+|+..      +.+.+..|
T Consensus        70 ~~~~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r  148 (194)
T 1qf9_A           70 TVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSGRSDDNIESIKKR  148 (194)
T ss_dssp             HHHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSCCTTCSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHH
Confidence            1112222222  45667777532   12222322333   46788889987 78888999877532      35677777


Q ss_pred             HHHHHHHh----hccCCCcE-EEECCCCCHHHHHHHHHHHHHH
Q 043263          237 IATAREEV----QHVKNFDY-VVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       237 l~~~~~~~----~~~~~~d~-viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      +..+....    +....+|. ++++++++++++.++|.+++..
T Consensus       149 i~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            77654221    22234674 4556668999999999998865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.29  E-value=3e-12  Score=112.02  Aligned_cols=52  Identities=21%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             hHHHhHhHHHHhcccccCCCCCC------------------CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           66 KIELLRSLEASLGHAFDSNPVCP------------------PPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        66 ~~i~~~~v~~~~~~~l~~~~~~~------------------~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+++++|++.|+..+.++++.+                  ..+|+++||+|||||||||++++|++++.
T Consensus        36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45788899999865555555443                  23499999999999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.28  E-value=2.9e-11  Score=96.59  Aligned_cols=150  Identities=17%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhhee
Q 043263           84 NPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALV  163 (286)
Q Consensus        84 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (286)
                      +++.+++ |++++|+|||||||||+++++.+-                      ..+  .+.+.++..+.+.....  .+
T Consensus         2 vsl~i~~-gei~~l~G~nGsGKSTl~~~~~~~----------------------~~~--~~~d~~~g~~~~~~~~~--~~   54 (171)
T 4gp7_A            2 MKLTIPE-LSLVVLIGSSGSGKSTFAKKHFKP----------------------TEV--ISSDFCRGLMSDDENDQ--TV   54 (171)
T ss_dssp             EEEEEES-SEEEEEECCTTSCHHHHHHHHSCG----------------------GGE--EEHHHHHHHHCSSTTCG--GG
T ss_pred             ccccCCC-CEEEEEECCCCCCHHHHHHHHccC----------------------CeE--EccHHHHHHhcCcccch--hh
Confidence            3445555 999999999999999999974321                      111  12222222221111000  00


Q ss_pred             cccccCccHHHHHHHHhcCCcEEEE-------eCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHH
Q 043263          164 YGDYKGIPKKQIREYMAKGYDIVLR-------VDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELL  234 (286)
Q Consensus       164 ~~~~~~~~~~~i~~~~~~g~~~v~~-------~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~  234 (286)
                      .+..+..........+..|...+.+       ++.|++++|+++. ..+.++++|+| ...+-.+...|..  .+...+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~-~~p~~lllDEP-t~~Ld~~~~~R~~~~~~~~vi~  132 (171)
T 4gp7_A           55 TGAAFDVLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH-CFPVAVVFNLP-EKVCQERNKNRTDRQVEEYVIR  132 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT-CEEEEEEECCC-HHHHHHHHHTCSSCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC-CcEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHH
Confidence            0000000111223334455555553       4679999999998 66678888988 5666666555432  2444443


Q ss_pred             HHHHHHHHHhhcc--CCCcEEEECCCCCHHHH
Q 043263          235 VRIATAREEVQHV--KNFDYVVVNAEGKLDSA  264 (286)
Q Consensus       235 ~rl~~~~~~~~~~--~~~d~viv~~~G~i~~~  264 (286)
                      .............  +....|++.++  ++++
T Consensus       133 ~~~~~l~~~l~~l~~~g~tvi~vtH~--~~~~  162 (171)
T 4gp7_A          133 KHTQQMKKSIKGLQREGFRYVYILNS--PEEV  162 (171)
T ss_dssp             HHHHHHHHHSTTHHHHTCSEEEEECS--HHHH
T ss_pred             HHHHHhhhhhhhHHhcCCcEEEEeCC--HHHh
Confidence            3322222221111  23556666665  5444

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.27  E-value=1.3e-10  Score=95.48  Aligned_cols=168  Identities=10%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc----hhh---hheec
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE----LLE---YALVY  164 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~----~~~---~~~~~  164 (286)
                      |.+|+|+|++||||||+++.|+..+...+ .+.. ++.| .    |.        .++..+..+.    +-+   ...+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~-~~~~-~----~~--------~i~~~~~~~~~~~~~~~~~~~~~~~   68 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL-TEWN-S----SD--------WIHDIIKEAKKKDLLTPLTFSLIHA   68 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE-EETT-C----CC--------HHHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE-ecCC-c----HH--------HHHHHHhccccccCCCHHHHHHHHH
Confidence            78999999999999999999998765221 1111 1111 1    11        1111111110    000   00000


Q ss_pred             ccccCccHHHHHHHHhcCCcEEEEeCHHH--------------HHHHHHHhCCCcEEEEEecCCHHHHHHHHH-HhcCC-
Q 043263          165 GDYKGIPKKQIREYMAKGYDIVLRVDIQG--------------ARTLRRILGDSAVFVFLAAESEMALVERLV-ERKTE-  228 (286)
Q Consensus       165 ~~~~~~~~~~i~~~~~~g~~~v~~~~~q~--------------v~iaral~~~~~~~Illd~~~~~~l~~rl~-~r~~~-  228 (286)
                      ...+....+.+...+..|..+++++....              +..+...+..++++|+|+++ .+.+.+|+. +|+.. 
T Consensus        69 ~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~~R~~~~  147 (213)
T 2plr_A           69 TDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVS-PDIALERIKKSKRKIK  147 (213)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECC-HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhccccccc
Confidence            00000011223445567777888864321              11111223357889999987 778889998 66521 


Q ss_pred             C-------------H---HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          229 N-------------R---EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       229 t-------------~---~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      .             .   ..+..++..+..+... .. ..++++.+++++++.++|.+.+.....
T Consensus       148 ~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~-~~-~~~~Id~~~~~e~v~~~I~~~l~~~~~  210 (213)
T 2plr_A          148 PQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVK-DE-NFIVIDGTKTPKEIQIQIRKFVGELID  210 (213)
T ss_dssp             TTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTT-TT-TCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHHHHHHh-hC-CEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            1             1   2344455444333221 12 445567778999999999999876543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.26  E-value=2.1e-10  Score=92.61  Aligned_cols=166  Identities=16%  Similarity=0.185  Sum_probs=83.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc-cCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhhee
Q 043263           85 PVCPPPNPLIIVISGPSGVGKDTVIKKLRES-RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALV  163 (286)
Q Consensus        85 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~-~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (286)
                      ++..+. +.+|+|+|++||||||+++.|+.. ++...++.....+........+..        +..     .++..   
T Consensus         4 ~~~~~~-~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~--------~~~-----~~~~r---   66 (184)
T 1y63_A            4 SMEQPK-GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTE--------LDT-----HIIEE---   66 (184)
T ss_dssp             --CCCS-SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC--------------C-----CCCCH---
T ss_pred             CcCCCC-CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHH--------hhh-----cccCC---
Confidence            344444 889999999999999999999987 432222211111111000000000        000     00000   


Q ss_pred             cccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043263          164 YGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILG--DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR  241 (286)
Q Consensus       164 ~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~--~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~  241 (286)
                      ...  ....+.+...+..+...+++.+..      .++.  ....+|+|+++ .+.+.+|+.+|+. +...+..++..+.
T Consensus        67 ~~~--~~~~~~l~~~~~~~g~~vi~~~~~------~~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~-~~~~~~~~~~~q~  136 (184)
T 1y63_A           67 KDE--DRLLDFMEPIMVSRGNHVVDYHSS------ELFPERWFHMVVVLHTS-TEVLFERLTKRQY-SEAKRAENMEAEI  136 (184)
T ss_dssp             HHH--HHHHHHHHHHHTSSSEEEEECSCC------TTSCGGGCSEEEEEECC-HHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred             CCH--HHHHHHHHHHHhccCCEEEeCchH------hhhhhccCCEEEEEECC-HHHHHHHHHhCCC-ChhhhHhhHHHHH
Confidence            000  000112233342333455554310      1121  14688999987 8889999998853 4544444443331


Q ss_pred             -----HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          242 -----EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       242 -----~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                           .+......+|.+|..++++++++..++.+++...+.
T Consensus       137 ~~~l~~~~~~~y~~~~vi~~n~~~~~~~~~~v~~i~~~l~~  177 (184)
T 1y63_A          137 QCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEV  177 (184)
T ss_dssp             TTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcEEECCCCCHHHHHHHHHHHHHHHHH
Confidence                 121111225767764668999997777777666543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.26  E-value=6.9e-11  Score=97.27  Aligned_cols=160  Identities=19%  Similarity=0.272  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch----hhhheecccc-
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL----LEYALVYGDY-  167 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~-  167 (286)
                      ++|.|+||+||||+|+++.|+..+...+.+..                     +-++..+..+.-    .......+.+ 
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istG---------------------dllR~~i~~~t~lg~~~~~~~~~G~lv   59 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTG---------------------DILREAVQKGTPLGKKAKEYMERGELV   59 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH---------------------HHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHH---------------------HHHHHHHHhcChhhhhHHHHHhcCCcC
Confidence            46899999999999999999998753333222                     222222211110    0000011110 


Q ss_pred             -cCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHH-------hCCCcEEEEEecCCHHHHHHHHHHhc-------------
Q 043263          168 -KGIPKKQIREYMAKGYDIVLRVDIQGARTLRRI-------LGDSAVFVFLAAESEMALVERLVERK-------------  226 (286)
Q Consensus       168 -~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral-------~~~~~~~Illd~~~~~~l~~rl~~r~-------------  226 (286)
                       ..+..+.+.+.+.+....+++|-+.-+..|.++       -..+..+|+|+.+ .+.+.+|+..|.             
T Consensus        60 pd~iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~  138 (206)
T 3sr0_A           60 PDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKY  138 (206)
T ss_dssp             CHHHHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTT
T ss_pred             CHHHHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeec
Confidence             011223445555556668888855333333332       1256788999997 888889998762             


Q ss_pred             -------------CCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          227 -------------TENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       227 -------------~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                   ..+.+.+.+|+..+..+..++     +....+.++.++++++++++|.+++..
T Consensus       139 ~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          139 NPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             BCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             cCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                         236788999999877654322     233455678788999999999998753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.25  E-value=1.2e-11  Score=102.57  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=53.5

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHh
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKA  277 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~  277 (286)
                      ..++.+|||+++ .+.+.+|+.+|.+.+.+.+..++..+....++...+|.+|. ++++++++.++|.++++....
T Consensus       124 ~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~ad~vId-~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          124 KKANRVLVVDVS-PETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVID-NNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             GGCSEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHHHHHCSEEEE-CSSCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEE-CCCCHHHHHHHHHHHHHHHHH
Confidence            346789999986 88888999888666777777776654332233356787664 446899999999998887654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.25  E-value=2.3e-11  Score=105.07  Aligned_cols=92  Identities=14%  Similarity=0.043  Sum_probs=63.2

Q ss_pred             CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHH
Q 043263          183 YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLD  262 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~  262 (286)
                      ..+++++....-   ..+...++.+|||+++ .+.+.+|+.+|.+.+.+.+..++..+....++...||.||. ++++++
T Consensus       182 ~~vIveg~~l~~---~~~~~~~d~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~~~~~~~AD~vId-n~~s~e  256 (281)
T 2f6r_A          182 TLCVIDAAMLLE---AGWQSMVHEVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLS-TLWESH  256 (281)
T ss_dssp             CEEEEECTTTTT---TTGGGGCSEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTSCCHHHHHHTCSEEEE-CSSCHH
T ss_pred             CEEEEEechhhc---cchHHhCCEEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHhhHhhCCEEEE-CCCCHH
Confidence            456777653110   0111235788999997 78888999888666888887777766443333457897765 457999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 043263          263 SAVKLVESVIDAEKAKV  279 (286)
Q Consensus       263 ~~~~~l~~~i~~~~~~~  279 (286)
                      ++.++|.+++.......
T Consensus       257 el~~~I~~~l~~l~~~~  273 (281)
T 2f6r_A          257 VTQSQVEKAWNLLQKRL  273 (281)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998765443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.25  E-value=2.2e-13  Score=131.29  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=50.6

Q ss_pred             cEEEEeCHHHHHHHHHHhCCCc--EEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          184 DIVLRVDIQGARTLRRILGDSA--VFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~~--~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      ..+++|++||+++||+++.+|.  .++++|+|+       ...+.+.|.+.  .+.|...++|+++.       ...||+
T Consensus       542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~-------~~~~d~  614 (670)
T 3ux8_A          542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-------IKTADY  614 (670)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCSE
T ss_pred             hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHhCCE
Confidence            4678899999999999997763  566666654       44444444332  24477888999886       356999


Q ss_pred             EEEC------CCCCH
Q 043263          253 VVVN------AEGKL  261 (286)
Q Consensus       253 viv~------~~G~i  261 (286)
                      |+++      ++|++
T Consensus       615 i~~l~~~~g~~~G~i  629 (670)
T 3ux8_A          615 IIDLGPEGGDRGGQI  629 (670)
T ss_dssp             EEEEESSSGGGCCEE
T ss_pred             EEEecCCcCCCCCEE
Confidence            9999      67754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.23  E-value=1.8e-10  Score=91.95  Aligned_cols=157  Identities=18%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +|++++|+|+|||||||++++|++.++...              +++.++..  ...+........+.+ ....... ..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--------------i~~d~~~~--~~~~~~~~~g~~~~~-~~~~~~~-~~   68 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--------------LDGDFLHP--RRNIEKMASGEPLND-DDRKPWL-QA   68 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--------------EEGGGGCC--HHHHHHHHTTCCCCH-HHHHHHH-HH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--------------EeCccccc--hHHHHHhhcCcCCCc-cccccHH-HH
Confidence            489999999999999999999998753211              12222211  111111000000000 0000000 00


Q ss_pred             cHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHh
Q 043263          171 PKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSA-VFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEV  244 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~  244 (286)
                      ....+...+..+..++++..   ......++..  .++ .+|+|+++ .+.+.+|+.+|++.  +...+..    +....
T Consensus        69 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~--~~~~~vv~l~~~-~e~~~~R~~~R~~~~~~~~~~~~----~~~~~  141 (175)
T 1knq_A           69 LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREG--NPNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVT----QFETL  141 (175)
T ss_dssp             HHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTT--CTTEEEEEEECC-HHHHHHHHHTSTTCCCCHHHHHH----HHHHC
T ss_pred             HHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhc--CCCEEEEEEECC-HHHHHHHHHhccCCCCchHHHHH----HHHhh
Confidence            11223334445666777642   2222333322  234 78889986 88899999988643  2333332    22222


Q ss_pred             hc---cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          245 QH---VKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       245 ~~---~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      +.   ...+|.+|. ++++++++.++|.+.+.
T Consensus       142 ~~~~~~~~~~~~Id-~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          142 QEPGADETDVLVVD-IDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CCCCTTCTTEEEEE-CSSCHHHHHHHHHHHHH
T ss_pred             hCcccCCCCeEEEe-CCCCHHHHHHHHHHHHh
Confidence            22   234666664 45899999999988775

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.23  E-value=1.1e-10  Score=96.58  Aligned_cols=176  Identities=16%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCccee-eeeecccCCCCCCcCCcceeeeCHHHHHHHhhc------cch---hhh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHF-VVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK------NEL---LEY  160 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~-~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~------~~~---~~~  160 (286)
                      +|.+|+|.|++||||||+++.|...+...+. .+ ..+|.|. |.    ++    .+.++..+..      ..+   .+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~-~t----~~----g~~ir~~l~~~~~~~~~~~~~~~e~   71 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPG-GT----QL----AEKLRSLLLDIKSVGDEVITDKAEV   71 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSC-SS----HH----HHHHHHHHHSTTTTTTCCCCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCC-CC----HH----HHHHHHHHhcccccccccCChHHHH
Confidence            3899999999999999999999987653333 22 3445552 11    11    1222333221      011   111


Q ss_pred             heecccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHH
Q 043263          161 ALVYGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERL  222 (286)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl  222 (286)
                      ..++.+......+.|..++..|..+++|-               +...+..+...   ...|+++||||.+ .+...+|+
T Consensus        72 lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~-~e~~~~Ri  150 (213)
T 4tmk_A           72 LMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKRA  150 (213)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHH
Confidence            12222211122334666788888888862               22333222222   2479999999997 77888999


Q ss_pred             HHhcCCC-----HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          223 VERKTEN-----REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       223 ~~r~~~t-----~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      .+|++.+     ......++......... .....++++.+++++++.++|.+.+.....+
T Consensus       151 ~~R~~~dr~E~~~~~f~~rv~~~y~~la~-~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~  210 (213)
T 4tmk_A          151 RARGELDRIEQESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  210 (213)
T ss_dssp             HHHSSCCTTTTSCHHHHHHHHHHHHHHHH-TCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCccchhhhHHHHHHHHHHHHHHHHH-HCCcEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            8875421     12334444444333221 1244666788889999999999999887654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.23  E-value=7.8e-11  Score=95.43  Aligned_cols=71  Identities=24%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhh-----ccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATAREEVQ-----HVKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~~~~~~-----~~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      .+..+|+|+++ .+.+.+|+.+|+.      .+.+.+..++..+.....     +...++.++++.+++++++.++|.+.
T Consensus       113 ~~~~~i~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~  191 (196)
T 1tev_A          113 DVSFVLFFDCN-NEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQI  191 (196)
T ss_dssp             EEEEEEEEECC-HHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence            35678899987 7888899877642      145666666665554432     12346665667778999999999988


Q ss_pred             HHH
Q 043263          272 IDA  274 (286)
Q Consensus       272 i~~  274 (286)
                      +..
T Consensus       192 l~~  194 (196)
T 1tev_A          192 FDK  194 (196)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.23  E-value=1.9e-10  Score=94.05  Aligned_cols=172  Identities=13%  Similarity=0.155  Sum_probs=91.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcc-eeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chh---hhheecc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSL-HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELL---EYALVYG  165 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~---~~~~~~~  165 (286)
                      +|.+|+|+|++||||||+++.|+..+..+ ...+..    +..+...|        +.++..+..+ .+-   ....+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~----~~~~~~~g--------~~i~~~~~~~~~~~~~~~~~l~~~   70 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF----PQRSTVTG--------KMIDDYLTRKKTYNDHIVNLLFCA   70 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES----SCTTSHHH--------HHHHHHHTSSCCCCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec----CCCCCcHH--------HHHHHHHhcCCCCCHHHHHHHHHH
Confidence            48899999999999999999999876322 222221    11000000        1112221111 010   0000000


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCHHH-----------HHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC--C
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDIQG-----------ARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE--N  229 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~q~-----------v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~--t  229 (286)
                      +.+.. .+.+...+..+..++++.-...           ......+   ...|+.+|+||++ .+.+.+   +|+..  .
T Consensus        71 ~r~~~-~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~---~R~~d~~e  145 (204)
T 2v54_A           71 NRWEF-ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR---NVGEEIYE  145 (204)
T ss_dssp             HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT---CCSSSTTC
T ss_pred             HHHHH-HHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh---hcCccccc
Confidence            11111 1344555667777777643210           1111222   1357889999998 555544   34221  2


Q ss_pred             HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263          230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKV  279 (286)
Q Consensus       230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~  279 (286)
                      ...+..++..+..+.......+.++++.+++++++.++|.+.+.......
T Consensus       146 ~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~  195 (204)
T 2v54_A          146 DVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTV  195 (204)
T ss_dssp             CSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence            12566667665544432333566777778899999999999998766543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.22  E-value=2.7e-10  Score=92.19  Aligned_cols=70  Identities=17%  Similarity=0.251  Sum_probs=45.3

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .++.+|+|+++ .+.+.+|+.+|+..+...+..++........... ...++++++++++++.+++.+++..
T Consensus       122 ~~d~vi~l~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~  191 (195)
T 2pbr_A          122 KPDITLLLDIP-VDIALRRLKEKNRFENKEFLEKVRKGFLELAKEE-ENVVVIDASGEEEEVFKEILRALSG  191 (195)
T ss_dssp             CCSEEEEEECC-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCC-HHHHHHHhhccCccchHHHHHHHHHHHHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            57899999997 7888899887655443445555543322211111 1234456678999999999988764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.21  E-value=3e-11  Score=100.81  Aligned_cols=173  Identities=16%  Similarity=0.164  Sum_probs=98.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcc----eeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch---hhhhee
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSL----HFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL---LEYALV  163 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~----~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~---~~~~~~  163 (286)
                      +|.+|+|.|++||||||+++.|...+...    +..+ ..+|.|. |.-.|        +.++..+.++.+   .+...+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~-~t~~g--------~~ir~~l~~~~~~~~~~~llf   93 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPG-GTRLG--------ETLREILLNQPMDLETEALLM   93 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSS-SSHHH--------HHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCC-CChHH--------HHHHHHHHcCCCCHHHHHHHH
Confidence            58999999999999999999999877533    3333 2455563 21111        234444433221   222223


Q ss_pred             cccccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHh
Q 043263          164 YGDYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVER  225 (286)
Q Consensus       164 ~~~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r  225 (286)
                      ..+.+....+.+..++..|..+++|-               +...+..+..+   ...|+++|+||.+ .+...+|+.+|
T Consensus        94 ~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~-~e~~~~Ri~~R  172 (227)
T 3v9p_A           94 FAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP-PQIASARRGAV  172 (227)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-SSCGGGTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence            33332333345667778888888762               12222222222   2579999999998 56677888876


Q ss_pred             cCC----C-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          226 KTE----N-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       226 ~~~----t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ++.    . ......++...............++++.+++++++.++|.+.++.
T Consensus       173 ~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          173 RMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             CCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            421    1 123444444443332211233466778888999999999988864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.20  E-value=4.8e-14  Score=129.60  Aligned_cols=52  Identities=17%  Similarity=0.154  Sum_probs=43.6

Q ss_pred             hhHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263           65 NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHF  121 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~  121 (286)
                      ...++++||++.|+    ++++.+.+ |++++|+||||||||||+++|+|++....+
T Consensus       116 ~~mi~~~nl~~~y~----~vsl~i~~-Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          116 HTMKYIYNLHFMLE----KIRMSNFE-GPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             CTHHHHHHHHHHHH----HHHHHSSS-CCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             cchhhhhhhhehhh----cCceEeCC-CCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            34689999999997    45666666 999999999999999999999999764444

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.4e-10  Score=100.35  Aligned_cols=145  Identities=19%  Similarity=0.236  Sum_probs=102.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ...|+|+||   ||+|+.+.|...++ .|+++++                  ++.+     +..+.|+            
T Consensus       145 ~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~------------------~~r~-----i~~~~fi------------  186 (308)
T 3kfv_A          145 KRPVVILGP---VADIAMQKLTAEMPDQFEIAET------------------VSRT-----DSPSKII------------  186 (308)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEEECCC------------------C-------------CC------------
T ss_pred             CCeEEEeCc---cHHHHHHHHHHhCccccccccc------------------cccc-----ccCCCee------------
Confidence            456999999   69999988877654 4444433                  0110     2222232            


Q ss_pred             cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHH-HhhccC
Q 043263          171 PKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT-ENREELLVRIATARE-EVQHVK  248 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~-~~~~~~  248 (286)
                      +.+.+++.+++|..++++++.|.+..++... ..+++||+.||+.+.|.++ ..|.. .+.+.+..+++.+.+ +.....
T Consensus       187 s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~-~~pi~IFI~PPS~eeL~~r-r~R~~~esee~~~r~~~aa~eiE~~~~~  264 (308)
T 3kfv_A          187 KLDTVRVIAEKDKHALLDVTPSAIERLNYVQ-YYPIVVFFIPESRPALKAL-RQWLAPASRRSTRRLYAQAQKLRKHSSH  264 (308)
T ss_dssp             CHHHHHHHHHTTCEEEECCCHHHHHHHHHTT-CCCEEEEEEESCHHHHHHH-HHHHSTTCCCCHHHHHHHHHHHHHHHGG
T ss_pred             cHHHHHHHHHCCCcEEEEECHHHHHHHHhcC-CCCEEEEEeCCCHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHhhhc
Confidence            7788999999999999999999998887654 4569999999999999875 55533 344445444454422 334457


Q ss_pred             CCcEEE-ECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          249 NFDYVV-VNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       249 ~~d~vi-v~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      .+|.|| +|++  +++++++|..+|..+..+
T Consensus       265 ~FD~vI~VNDd--le~A~~~L~~iI~~~~~e  293 (308)
T 3kfv_A          265 LFTATIPLNGT--SDTWYQELKAIIREQQTR  293 (308)
T ss_dssp             GCSEEEEECSS--STHHHHHHHHHHHHHTTS
T ss_pred             cCcEEEEcCCC--HHHHHHHHHHHHHHhcCC
Confidence            899999 8876  999999999999987543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.20  E-value=3.1e-11  Score=97.30  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=45.9

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhc---C---CCHHHHHHHHHHHHHHh----hccCCCc-EEEECCCCCHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERK---T---ENREELLVRIATAREEV----QHVKNFD-YVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~---~---~t~~~i~~rl~~~~~~~----~~~~~~d-~viv~~~G~i~~~~~~l~~~i  272 (286)
                      +..+|+|+++ .+.+.+|+..|.   +   .+.+.+..|+..+....    +....++ .++++++++++++.++|.+.+
T Consensus       106 ~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          106 LLGVVLVEVP-EEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             EEEEEEEECC-HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             CCEEEEEeCC-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            5788999987 788889988764   2   35667777776654331    1122233 455566689999999998776

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.19  E-value=4.4e-11  Score=101.61  Aligned_cols=91  Identities=15%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             hcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHH------hhccC
Q 043263          180 AKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVE-----RKTENREELLVRIATAREE------VQHVK  248 (286)
Q Consensus       180 ~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~-----r~~~t~~~i~~rl~~~~~~------~~~~~  248 (286)
                      ..+..++++|..    +...++.+.++.|||+++ .+.+.+|+.+     +...+.+.+..++......      .....
T Consensus       143 a~~~~~V~~gr~----~~~~v~~~~~~~ifl~A~-~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~  217 (252)
T 4e22_A          143 REAPGLIADGRD----MGTIVFPDAPVKIFLDAS-SQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVP  217 (252)
T ss_dssp             CCSSCEEEEESS----CCCCCSTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCC
T ss_pred             hhCCCEEEEece----eceeecCCCCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhc
Confidence            345567776631    011133566899999998 5555555433     3334666666555433221      12224


Q ss_pred             CCcEEEECCCC-CHHHHHHHHHHHHHHH
Q 043263          249 NFDYVVVNAEG-KLDSAVKLVESVIDAE  275 (286)
Q Consensus       249 ~~d~viv~~~G-~i~~~~~~l~~~i~~~  275 (286)
                      .+|.+++++++ ++++++++|.++++..
T Consensus       218 ~~d~~~Idts~~~~eev~~~I~~~i~~~  245 (252)
T 4e22_A          218 AADALVLDSTSMSIEQVIEQALAYAQRI  245 (252)
T ss_dssp             CTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence            56656666655 8999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.18  E-value=1.3e-10  Score=98.55  Aligned_cols=74  Identities=15%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             cEEEEEecCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHH--Hh----hccCCCcEEE---ECCCCCHHHHHHHHHHH
Q 043263          205 AVFVFLAAESEMALVERLVERK----TENREELLVRIATARE--EV----QHVKNFDYVV---VNAEGKLDSAVKLVESV  271 (286)
Q Consensus       205 ~~~Illd~~~~~~l~~rl~~r~----~~t~~~i~~rl~~~~~--~~----~~~~~~d~vi---v~~~G~i~~~~~~l~~~  271 (286)
                      +.+|||+++ .+.+.+|+..|.    +.+.+.+..++.....  ..    .....||.||   ++++++++++.++|.++
T Consensus       152 d~vi~l~~~-~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~  230 (252)
T 1uj2_A          152 QMKLFVDTD-ADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI  230 (252)
T ss_dssp             SEEEEEECC-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred             CeeEEEeCC-HHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHH
Confidence            689999997 777788887764    4577777776665331  11    2345688877   24567899999999998


Q ss_pred             HHHHHhcc
Q 043263          272 IDAEKAKV  279 (286)
Q Consensus       272 i~~~~~~~  279 (286)
                      +.....+.
T Consensus       231 l~~~~~~~  238 (252)
T 1uj2_A          231 LNGGPSKR  238 (252)
T ss_dssp             HHC-----
T ss_pred             Hccchhhh
Confidence            87655433

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.18  E-value=2.8e-11  Score=99.61  Aligned_cols=172  Identities=15%  Similarity=0.051  Sum_probs=91.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-hh---hhheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-LL---EYALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~~---~~~~~~~~  166 (286)
                      +|.+|+|+|++||||||+++.|+..+...++.+ +..+.|..|...|        ..++..+..+. +-   ....+..+
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~~~~~~g--------~~i~~~~~~~~~~~~~~~~~~~~~~   79 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFPNRETGIG--------QIISKYLKMENSMSNETIHLLFSAN   79 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCTTSHHH--------HHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecCCCCCcHH--------HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            488999999999999999999998764333333 2233332222111        11111111110 00   00000000


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCHHH------H------HHHHHH---hCCCcEEEEEecCCHHHHHHHHHHh-cCCCH
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDIQG------A------RTLRRI---LGDSAVFVFLAAESEMALVERLVER-KTENR  230 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~------v------~iaral---~~~~~~~Illd~~~~~~l~~rl~~r-~~~t~  230 (286)
                      .... .+.+...+..+..++++.....      .      ..+..+   +..++.+|+|+++ .+.+.+|+..+ .+...
T Consensus        80 ~~~~-~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~r~~r~~~  157 (212)
T 2wwf_A           80 RWEH-MNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVP-PNYAQNRSDYGEEIYEK  157 (212)
T ss_dssp             HHTT-HHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECC-TTGGGGSTTTTSSTTCS
T ss_pred             HHHH-HHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCC-HHHHHHhhccCcccccH
Confidence            0001 1234555666777777754311      0      111111   1357889999997 56677887654 22233


Q ss_pred             HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          231 EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       231 ~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ..+..++..+..+...  ....++++++++++++.++|.+.+...
T Consensus       158 ~~~~~~~~~~~~~~~~--~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          158 VETQKKIYETYKHFAH--EDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHHHHHHHHGGGGTT--CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhc--cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            4555666554433322  333455566689999999999988655

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.17  E-value=6.4e-10  Score=88.85  Aligned_cols=160  Identities=14%  Similarity=0.166  Sum_probs=83.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeee-c---ccCCCCC-CcCCcceee----eCHHHHHHHhhccchhhhhe
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTA-T---SRPMRPG-EVNGKDYFF----VSKEEFLQMVDKNELLEYAL  162 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~-~---~r~~~~G-~~~g~~~~~----~~~~~~~~~i~~~~~~~~~~  162 (286)
                      +.+|.|+|++||||||+++.|+..++...+.+.. .   .+.+..+ +..|.++..    .....++             
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------   69 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFR-------------   69 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHH-------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHH-------------
Confidence            6789999999999999999999876421111110 0   1111100 011111100    0000000             


Q ss_pred             ecccccCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263          163 VYGDYKGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRILGDSA-VFVFLAAESEMALVERLVERKTENREELLVRI  237 (286)
Q Consensus       163 ~~~~~~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl  237 (286)
                         ..+....+.+...+..|..+++++..    ......+..+...+ .+|+|+++ .+.+.+|+.+|+........   
T Consensus        70 ---~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~r~~~~~~~~~---  142 (178)
T 1qhx_A           70 ---ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMAA---  142 (178)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHHH---
T ss_pred             ---HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECC-HHHHHHHHHhhCCcccchhh---
Confidence               00111112344556677778887632    11233444554434 56778875 88999999888654333211   


Q ss_pred             HHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          238 ATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       238 ~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                       .+.........+|.+|..++.++++++++|.+.+
T Consensus       143 -~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          143 -KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             -HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             -hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence             1111111123488877666558999988887643

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.16  E-value=6e-11  Score=98.60  Aligned_cols=174  Identities=13%  Similarity=0.072  Sum_probs=90.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCc-ceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-ch---hhhheecc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-EL---LEYALVYG  165 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~---~~~~~~~~  165 (286)
                      +|.+|+|.|++||||||+++.|...+.. .+..+..++|.|. |.    ++    .+.++..+... .+   .+...+..
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~-~t----~~----g~~ir~~l~~~~~~~~~~e~llf~a   90 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GT----LL----NESVRNLLFKAQGLDSLSELLFFIA   90 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC-SS----HH----HHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC-CC----hH----HHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            4899999999999999999999987754 4444444455564 21    11    12223322211 01   11111111


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHHh--CCCcEEEEEecCCHHHHHHHHHHhcCC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRIL--GDSAVFVFLAAESEMALVERLVERKTE  228 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral~--~~~~~~Illd~~~~~~l~~rl~~r~~~  228 (286)
                      +.+....+.+..++..|..+++|-               +...+..+..+.  ..|+++|+||.+ .+...+|+ ++++.
T Consensus        91 ~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~-~e~~~~Ri-~rdr~  168 (223)
T 3ld9_A           91 MRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-INESLSRS-CKNGY  168 (223)
T ss_dssp             HHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCC-HHHHHHHh-ccCcc
Confidence            111112223555677777777652               223333333333  379999999998 56666777 44332


Q ss_pred             CH--HHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          229 NR--EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       229 t~--~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ..  .....++.....+.........++++.+++++++ ++|.+.++...
T Consensus       169 E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~l  217 (223)
T 3ld9_A          169 EFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVI  217 (223)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence            22  3344555555443322223356667888899999 98888887654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.15  E-value=2.2e-11  Score=99.83  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      ++.+|+|+++ .+.+.+|+.+| +.+.+.+..++..+....++...+|.+| +++++++++.+++.+++....
T Consensus       124 ~~~~i~l~~~-~e~~~~Rl~~R-~~~~~~~~~~~~~~~~~~~~~~~ad~vI-d~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          124 YDKLIVVYAP-YEVCKERAIKR-GMSEEDFERRWKKQMPIEEKVKYADYVI-DNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             SSEEEEECCC-HHHHHHHHHHT-CCCHHHHHHHHTTSCCHHHHGGGCSEEC-CCSSCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECC-HHHHHHHHHHc-CCCHHHHHHHHHhCCChhHHHhcCCEEE-ECCCCHHHHHHHHHHHHHHHh
Confidence            5788999987 78888999888 4577777777766544333345688654 556899999999999887543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.15  E-value=2.5e-10  Score=92.87  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=42.6

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREE--VQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~--~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .+.+|+++++ .+...+|+              +..+++.  .++...||.||.|+ |+++++.+++.++++..
T Consensus       130 ~d~vi~v~a~-~e~r~~Rl--------------i~~q~~~~~~~~~~~AD~vI~n~-~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          130 CDHVITVVAS-RETILKRN--------------READRRLKFQEDIVPQGIVVANN-STLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             CSEEEEEECC-HHHHHHHC--------------SSHHHHHTTCTTCCCCSEEEECS-SCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECC-HHHHHHHH--------------HHhcCCchhhhHHhcCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence            3688999997 77777777              2344444  45567899998655 89999999999998876

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.15  E-value=9.7e-13  Score=119.71  Aligned_cols=68  Identities=10%  Similarity=0.051  Sum_probs=52.0

Q ss_pred             EEEeCHHHHHHHHHHhCCC--cEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          186 VLRVDIQGARTLRRILGDS--AVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       186 v~~~~~q~v~iaral~~~~--~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      +++|++|++.+|++++.+|  +++||      ||+.....+.+.|.+.. +.+...++|+...       ...||+++++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~-------~~~~d~i~~l  368 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQI-------AARAHHHYKV  368 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-------HTTCSEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-------HhhcCeEEEE
Confidence            4678899999999999888  88777      66666667777776643 3466778998755       3679999999


Q ss_pred             ----CCCC
Q 043263          257 ----AEGK  260 (286)
Q Consensus       257 ----~~G~  260 (286)
                          ++|+
T Consensus       369 ~k~~~~G~  376 (415)
T 4aby_A          369 EKQVEDGR  376 (415)
T ss_dssp             EEEEETTE
T ss_pred             EEeccCCc
Confidence                7774

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.15  E-value=1.2e-12  Score=108.02  Aligned_cols=124  Identities=16%  Similarity=0.160  Sum_probs=64.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcc-----------eeeeCHHHHHHHhhccchhh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKD-----------YFFVSKEEFLQMVDKNELLE  159 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~-----------~~~~~~~~~~~~i~~~~~~~  159 (286)
                      +|++++|+||||||||||+++|+|+ .            |.+|++.+.+           +.++.+.....+ .  .+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~------------p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl-~--~~~~   84 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ-A------------LQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKI-D--PYLR   84 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH-H------------HHTTSCSEEEEEECSCCTTCCCCSSCC-------C--TTTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC-C------------CcCCeeeeEEecCCchhhhcceEEecCCHHHHH-H--HHHH
Confidence            4999999999999999999999998 6            3333332111           111111100000 0  0000


Q ss_pred             hheecccccC-ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCC---HHHHHHHHHHh-cCCCHHHHH
Q 043263          160 YALVYGDYKG-IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAES---EMALVERLVER-KTENREELL  234 (286)
Q Consensus       160 ~~~~~~~~~~-~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~---~~~l~~rl~~r-~~~t~~~i~  234 (286)
                        ..+..... ...+.+.+.++.+.     |++|++++||+++.+| -+++||.|+   ...+.+.|.+. .+.+.. ++
T Consensus        85 --~~~~~~~~~~~~~~~~~~l~~gl-----Gq~qrv~lAraL~~~p-~lllLDEPts~~~~~l~~~l~~l~~g~tii-vt  155 (208)
T 3b85_A           85 --PLHDALRDMVEPEVIPKLMEAGI-----VEVAPLAYMRGRTLND-AFVILDEAQNTTPAQMKMFLTRLGFGSKMV-VT  155 (208)
T ss_dssp             --HHHHHHTTTSCTTHHHHHHHTTS-----EEEEEGGGGTTCCBCS-EEEEECSGGGCCHHHHHHHHTTBCTTCEEE-EE
T ss_pred             --HHHHHHHHhccHHHHHHHHHhCC-----chHHHHHHHHHHhcCC-CEEEEeCCccccHHHHHHHHHHhcCCCEEE-EE
Confidence              00000001 11233455555532     9999999999999555 556666663   44444444443 223455 77


Q ss_pred             HHHHH
Q 043263          235 VRIAT  239 (286)
Q Consensus       235 ~rl~~  239 (286)
                      |+++.
T Consensus       156 Hd~~~  160 (208)
T 3b85_A          156 GDITQ  160 (208)
T ss_dssp             EC---
T ss_pred             CCHHH
Confidence            76554

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.15  E-value=3.3e-09  Score=86.57  Aligned_cols=170  Identities=20%  Similarity=0.307  Sum_probs=88.1

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheec
Q 043263           86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVY  164 (286)
Q Consensus        86 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (286)
                      +..+..+.+|+|+|++||||||+++.|+..+....+......+. ...    +..+    ...+...+..+.+....   
T Consensus        14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~----~~~~----g~~i~~~~~~g~~~~~~---   82 (201)
T 2cdn_A           14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEE----GTKL----GVEAKRYLDAGDLVPSD---   82 (201)
T ss_dssp             --CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHT----TCHH----HHHHHHHHHHTCCCCHH---
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHc----CChH----HHHHHHHHHcCCcccHH---
Confidence            33344578999999999999999999998654211111110010 000    0000    01111111111110000   


Q ss_pred             ccccCccHHHHHHHH---hcCCcEEEEeC---HHHHHHHHHHh----CCCcEEEEEecCCHHHHHHHHHHhcC--CCHHH
Q 043263          165 GDYKGIPKKQIREYM---AKGYDIVLRVD---IQGARTLRRIL----GDSAVFVFLAAESEMALVERLVERKT--ENREE  232 (286)
Q Consensus       165 ~~~~~~~~~~i~~~~---~~g~~~v~~~~---~q~v~iaral~----~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~  232 (286)
                           .....+.+.+   ..+..+++++.   ......+..++    ..+..+|+|+++ .+.+.+|+.+|++  .+.+.
T Consensus        83 -----~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~  156 (201)
T 2cdn_A           83 -----LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRGRADDTDDV  156 (201)
T ss_dssp             -----HHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHH
T ss_pred             -----HHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCCCHHH
Confidence                 0011111211   23556777752   21122222222    236788999997 7788899988754  35677


Q ss_pred             HHHHHHHHHHHh----hccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          233 LLVRIATAREEV----QHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       233 i~~rl~~~~~~~----~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      +..++..+....    +....++ ++++++++++++.++|.++++
T Consensus       157 ~~~r~~~~~~~~~~~~~~~~~~~-~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          157 ILNRMKVYRDETAPLLEYYRDQL-KTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             HHHHHHHHHHHTTTHHHHTTTTE-EEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHhcCcE-EEEeCCCCHHHHHHHHHHHHc
Confidence            777777665432    1122334 444666899999999987763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.12  E-value=8.8e-11  Score=97.61  Aligned_cols=77  Identities=19%  Similarity=0.394  Sum_probs=51.5

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcC-----------------------------CCHHHHHHHHHHHHHHhhcc-CCC--
Q 043263          203 DSAVFVFLAAESEMALVERLVERKT-----------------------------ENREELLVRIATAREEVQHV-KNF--  250 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~-----------------------------~t~~~i~~rl~~~~~~~~~~-~~~--  250 (286)
                      .|+++|+||++ .+.+.+|+..|..                             ...+.+..|+.....+...+ ..+  
T Consensus       108 ~~~~vi~L~~~-~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~  186 (222)
T 1zak_A          108 RPDTFILLDVP-DELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN  186 (222)
T ss_dssp             CCSEEEEEECC-HHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECC-HHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999997 7788899875431                             13456777777665433221 111  


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      ..+.++.++++++++++|.+.+.....+..
T Consensus       187 ~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~  216 (222)
T 1zak_A          187 IIVKVQGDATVDAVFAKIDELLGSILEKKN  216 (222)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHHHhhccccc
Confidence            245566778999999999999987654443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.12  E-value=2.2e-10  Score=95.91  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCC--C--HHHHHHHHHHHHHHhhc----cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTE--N--REELLVRIATAREEVQH----VKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~--t--~~~i~~rl~~~~~~~~~----~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ..|+++|+||.+ .+...+|+.+|+..  .  ......++..+..+...    ...++.++++.+++++++.++|.++++
T Consensus       145 ~~pD~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~  223 (230)
T 2vp4_A          145 VQADLIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSES  223 (230)
T ss_dssp             CCCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC--------------
T ss_pred             CCCCEEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence            468999999997 77888998877542  1  11456677766655421    234555777888899999999999887


Q ss_pred             HHH
Q 043263          274 AEK  276 (286)
Q Consensus       274 ~~~  276 (286)
                      ...
T Consensus       224 ~~~  226 (230)
T 2vp4_A          224 SIF  226 (230)
T ss_dssp             ---
T ss_pred             HHh
Confidence            654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.11  E-value=1.3e-10  Score=94.85  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      .++.+|+|+++ .+.+.+|+.+|.+.+...+..++..+....++...+|.+| +++++++++.+++.+++....
T Consensus       124 ~~d~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~~~~ad~vI-d~~~~~~~~~~~i~~~~~~~~  195 (203)
T 1uf9_A          124 RLHGTLLVAAP-LEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVL-ENTGSLEDLERALKAVLAELT  195 (203)
T ss_dssp             GSSEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHHHHHCSEEE-CCSSHHHHHHHHHHHHHHSCC
T ss_pred             hCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHCCChhHHHHhCCEEE-ECCCCHHHHHHHHHHHHHHHH
Confidence            35789999986 7788899988865555556555554332222234678654 666789999999999887543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.10  E-value=1.7e-09  Score=88.87  Aligned_cols=175  Identities=19%  Similarity=0.244  Sum_probs=91.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-h---hhhheecccc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-L---LEYALVYGDY  167 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~---~~~~~~~~~~  167 (286)
                      |.+|+|-|+.||||||+++.|+..+.. +..+. .++.|. |.    ++    .+.++..+.++. +   .+...+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~-~~~eP~-~t----~~----g~~ir~~l~~~~~~~~~~~~lLf~a~R   70 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI-MTREPG-GV----PT----GEEIRKIVLEGNDMDIRTEAMLFAASR   70 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE-EEESST-TC----HH----HHHHHHHHHSSCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEE-EeeCCC-CC----hH----HHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            578999999999999999999987642 11111 233342 11    11    122233322211 0   1111111111


Q ss_pred             cCccHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCC-
Q 043263          168 KGIPKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTE-  228 (286)
Q Consensus       168 ~~~~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~-  228 (286)
                      .....+.+..++.+|..++++-               +...+..+...   ...|+++||||.+ .+...+|+.+|++. 
T Consensus        71 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~Ri~~r~~~~  149 (205)
T 4hlc_A           71 REHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRDQ  149 (205)
T ss_dssp             HHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHHHHHhcCCcc
Confidence            1112234556677787777752               12222222221   2368999999998 67777998776542 


Q ss_pred             ---CHH--HHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          229 ---NRE--ELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       229 ---t~~--~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                         ..+  ....++...............++++.+++++++.++|.+.+.....+
T Consensus       150 dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~  204 (205)
T 4hlc_A          150 NRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK  204 (205)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred             cchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence               111  22334433332222112223566677789999999999988876543

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.10  E-value=1.3e-10  Score=101.12  Aligned_cols=177  Identities=17%  Similarity=0.135  Sum_probs=105.3

Q ss_pred             CeEEEEEcCCCCCHHHH---HHHHHhcc-CcceeeeeecccCCCCCCcCCcce--eeeCHHHHHHHhhccchhhhheecc
Q 043263           92 PLIIVISGPSGVGKDTV---IKKLRESR-DSLHFVVTATSRPMRPGEVNGKDY--FFVSKEEFLQMVDKNELLEYALVYG  165 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl---~~~L~~~~-~~~~~~i~~~~r~~~~G~~~g~~~--~~~~~~~~~~~i~~~~~~~~~~~~~  165 (286)
                      +.-|+|+||++.|--++   -+.|...+ ..|.+.+.+| |.+..-...++.+  .+.....+...+....+.+      
T Consensus       142 ~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~e------  214 (337)
T 4dey_A          142 MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAE------  214 (337)
T ss_dssp             SCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHH------
T ss_pred             CCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHH------
Confidence            44599999999998753   23333222 2345555433 4343333333321  0111111111112222221      


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCHH-HHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDIQ-GARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV  244 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~q-~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~  244 (286)
                        +....+.+.+....|..++++.+.| .+..++..+ ..+++||+-+|+.+.|.+||..|+......+..+++.+..+.
T Consensus       215 --v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~-~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~  291 (337)
T 4dey_A          215 --VQSEIERIFELARTLQLVVLDADTINHPAQLSKTS-LAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLA  291 (337)
T ss_dssp             --HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSS-CCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred             --HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcC-CCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence              1112344455566889999999998 877777655 457899999999999999999886522333444444444444


Q ss_pred             hc-cCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          245 QH-VKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       245 ~~-~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      .. ...+|.||+|++  +++++++|..+|..+...++
T Consensus       292 ~~~~~~FDyvIVNDd--Le~A~~~L~~iI~~~~~~~h  326 (337)
T 4dey_A          292 QCPPELFDVILDENQ--LEDACEHLADYLEAYWKATH  326 (337)
T ss_dssp             HSCGGGCSEEECCSS--HHHHHHHHHHHHHHHHHHHS
T ss_pred             hhCcccCCEEEECCC--HHHHHHHHHHHHHHHHhccC
Confidence            33 578999999887  99999999999998765554

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.10  E-value=6.1e-10  Score=90.07  Aligned_cols=113  Identities=19%  Similarity=0.283  Sum_probs=62.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-ch--hhhh-eeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-EL--LEYA-LVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~--~~~~-~~~~~  166 (286)
                      ++.+|+|+|++||||||+++.|+..+.                    ..  .++.+.+...+... ..  .++. .....
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~--------------------~~--~i~~D~~~~~~~~~~~~~~~~~~~~~~~~   61 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLR--------------------LP--LLSKDAFKEVMFDGLGWSDREWSRRVGAT   61 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHT--------------------CC--EEEHHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC--------------------Ce--EecHHHHHHHHHHhcCccchHHHHHhhHH
Confidence            478999999999999999999998653                    11  12223222221110 00  0000 00000


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCHHH---H-HH--HHHHhCCCcEEEEEecCCHHHHHHHHHHhc
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDIQG---A-RT--LRRILGDSAVFVFLAAESEMALVERLVERK  226 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~---v-~i--aral~~~~~~~Illd~~~~~~l~~rl~~r~  226 (286)
                      .+....+.+...+..|..+++++....   . .+  +......+.++|+|+++ .+.+.+|+.+|+
T Consensus        62 ~~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~  126 (193)
T 2rhm_A           62 AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRI  126 (193)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhc
Confidence            111122334555677888888865411   1 11  22222346688899986 888889998775

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.10  E-value=2e-10  Score=91.40  Aligned_cols=66  Identities=14%  Similarity=0.116  Sum_probs=35.7

Q ss_pred             cEEEEEecCCHHHHHHHHHHhcCC-------C-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          205 AVFVFLAAESEMALVERLVERKTE-------N-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       205 ~~~Illd~~~~~~l~~rl~~r~~~-------t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .++++++++ .+.+.+|+.+|...       . ...+...+....+  .+...+|.+|.++++++++++++|.+.+.
T Consensus        98 ~~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~--~~~~~a~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A           98 GVVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANERNP--LYEEIADVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             SEEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHHHHH--HHHHHCSEEC-----CHHHHHHHHHHHHC
T ss_pred             CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHH--HHHhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence            678899987 77888888765211       1 3444433332111  11234677775555789999999988774

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.09  E-value=5.7e-11  Score=97.22  Aligned_cols=158  Identities=13%  Similarity=0.108  Sum_probs=78.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|++|+|+|+|||||||++++|++.+. .            .    |.-..+++.+.+...+... .+.... ..... .
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~------------~----G~~~~~~d~d~~~~~~~~~~~~~~~~-~~~~~-~   84 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY-Q------------K----GKLCYILDGDNVRHGLNRDLSFKAED-RAENI-R   84 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH-H------------T----TCCEEEEEHHHHTTTTTTTCCSSHHH-HHHHH-H
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-h------------c----CceEEEecCchhhhHhhcccCcChHH-HHHHH-H
Confidence            499999999999999999999999863 1            1    1111122222221111000 000000 00000 0


Q ss_pred             ccHHHHHHHHhcCCcEEEEe---CHHHHHHHHHHhCC-CcEEEEEecCCHHHHHHHH------HHhcCC--CHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRV---DIQGARTLRRILGD-SAVFVFLAAESEMALVERL------VERKTE--NREELLVRI  237 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~---~~q~v~iaral~~~-~~~~Illd~~~~~~l~~rl------~~r~~~--t~~~i~~rl  237 (286)
                      ...+........+..++...   .......++.++.. +.+.|||+++ .+.+.+|+      ..+.+.  ....+.   
T Consensus        85 ~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~-~e~~~~R~~~~l~~~~r~~~~~~~~~~~---  160 (200)
T 3uie_A           85 RVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVP-LSVCEARDPKGLYKLARAGKIKGFTGID---  160 (200)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCC-HHHHHHHCTTSHHHHHHTTSSCSCBTTT---
T ss_pred             HHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHhcccchHHHHhcCCCCCCCCCC---
Confidence            00111222234455555432   22344556666533 3356889987 77777775      222211  101110   


Q ss_pred             HHHHHHhhccCCCcEEEECCC-CCHHHHHHHHHHHHHHH
Q 043263          238 ATAREEVQHVKNFDYVVVNAE-GKLDSAVKLVESVIDAE  275 (286)
Q Consensus       238 ~~~~~~~~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~~  275 (286)
                       .   ..+....+|.+|..++ .++++++++|.+.++..
T Consensus       161 -~---~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~  195 (200)
T 3uie_A          161 -D---PYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNK  195 (200)
T ss_dssp             -B---CCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             -C---cCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence             0   0111124566655555 48999999999988654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.09  E-value=5.1e-09  Score=84.41  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHH-HHHHhhccchhhhheecccc----
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE-FLQMVDKNELLEYALVYGDY----  167 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~----  167 (286)
                      .+|+|+|++||||||+++.|+..+...                 |..+...+..+ +...+....+......+..+    
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ-----------------GINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK   64 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT-----------------TCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc-----------------CceEEEEECChHHHHHHHhcccccchhhhhcCCHHH
Confidence            579999999999999999999876411                 22222222111 11111000000000000000    


Q ss_pred             ----cCccHHHHHHHH--hcCCcEEEEeCH----H-H------HHHHHHHhCCCcEEEEEecCCHHHHHHHHHH--hcC-
Q 043263          168 ----KGIPKKQIREYM--AKGYDIVLRVDI----Q-G------ARTLRRILGDSAVFVFLAAESEMALVERLVE--RKT-  227 (286)
Q Consensus       168 ----~~~~~~~i~~~~--~~g~~~v~~~~~----q-~------v~iaral~~~~~~~Illd~~~~~~l~~rl~~--r~~-  227 (286)
                          .......+...+  ..+..+++++..    | .      ....+.+  .+..+|+|+++.+..+.+|+..  |+. 
T Consensus        65 ~~~~~~~~~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~~~R~~~  142 (194)
T 1nks_A           65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDTTRNRN  142 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCTTTCCC
T ss_pred             HHHHHHHHHHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhhcccCCC
Confidence                000011233444  567778887521    1 0      1233333  4788999999854444455776  653 


Q ss_pred             --CCHHHH--HHHHHHHHHHhhc-cCCCcEEEE-CCCCCHHHHHHHHHHHH
Q 043263          228 --ENREEL--LVRIATAREEVQH-VKNFDYVVV-NAEGKLDSAVKLVESVI  272 (286)
Q Consensus       228 --~t~~~i--~~rl~~~~~~~~~-~~~~d~viv-~~~G~i~~~~~~l~~~i  272 (286)
                        .+...+  ..++.....+... ...++.+++ ++++++++++++|.+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          143 DYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence              233333  2333333322211 113555677 77788999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.09  E-value=4.7e-10  Score=90.27  Aligned_cols=161  Identities=12%  Similarity=0.069  Sum_probs=79.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccc-ccC-
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGD-YKG-  169 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~-  169 (286)
                      +.+|+|+|++||||||+++.|+..++                    .  .+++.+.+........+.+....++. .+. 
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~--------------------~--~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~   62 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK--------------------R--ILYDSDKEIEKRTGADIAWIFEMEGEAGFRR   62 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC--------------------C--CEEEHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--------------------C--CEEEChHHHHHHcCCChhhHHHHhCHHHHHH
Confidence            67899999999999999999998753                    1  12233332222111111111011110 111 


Q ss_pred             ccHHHHHHHHhcCCcEEEEe-CHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH--HHh---cCCCHHHHHHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRV-DIQGARTLRRILGDSAVFVFLAAESEMALVERL--VER---KTENREELLVRIATAREE  243 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~-~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl--~~r---~~~t~~~i~~rl~~~~~~  243 (286)
                      ...+.+.........++..+ ..-.-...+..+.....+|+|+++ .+.+.+|+  ..+   ...+......++.....+
T Consensus        63 ~~~~~~~~~~~~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~  141 (185)
T 3trf_A           63 REREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEI  141 (185)
T ss_dssp             HHHHHHHHHHHSSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEecCCceecCHHHHHHHHhCCcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Confidence            11122333333333333322 110001112222223588999997 78888999  432   212222222333332222


Q ss_pred             hhc--cCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          244 VQH--VKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       244 ~~~--~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ...  ...+|.+|.+++..+++++++|.+.+...
T Consensus       142 r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          142 RKPLYQAMADLVYPTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             HHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred             HHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            111  13488888666558999999998877643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.08  E-value=1.6e-09  Score=89.97  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             CCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH----HHhcC-CCHHHHHHHHHH----HHH-HhhccCCC-
Q 043263          182 GYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERL----VERKT-ENREELLVRIAT----ARE-EVQHVKNF-  250 (286)
Q Consensus       182 g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl----~~r~~-~t~~~i~~rl~~----~~~-~~~~~~~~-  250 (286)
                      +..+++++..    ++++++..++++|||+++ .+.+.+|+    .+++. .+.+.+..++..    +.. ..++...+ 
T Consensus       123 ~~~~vldg~~----~~~~~~~~~d~~i~l~~~-~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~  197 (227)
T 1cke_A          123 LPGLIADGRD----MGTVVFPDAPVKIFLDAS-SEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAA  197 (227)
T ss_dssp             TTCEEEEESS----CCCCCCTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCT
T ss_pred             CCCEEEECCC----ccceEecCCCEEEEEeCC-HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCC
Confidence            4566777651    223455678899999997 56666763    24432 144444333332    222 22333333 


Q ss_pred             cEEEECCC-CCHHHHHHHHHHHHHHH
Q 043263          251 DYVVVNAE-GKLDSAVKLVESVIDAE  275 (286)
Q Consensus       251 d~viv~~~-G~i~~~~~~l~~~i~~~  275 (286)
                      +.++++++ ++++++.++|.+.++..
T Consensus       198 ~~~~Id~~~~~~~ev~~~I~~~l~~~  223 (227)
T 1cke_A          198 DALVLDSTTLSIEQVIEKALQYARQK  223 (227)
T ss_dssp             TCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            33455555 79999999999988754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.06  E-value=4.7e-10  Score=92.10  Aligned_cols=173  Identities=14%  Similarity=0.021  Sum_probs=81.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceee-eeecccCCCCCCc--CC---cce-eeeCHHHHHHHhhccchhhhhee
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFV-VTATSRPMRPGEV--NG---KDY-FFVSKEEFLQMVDKNELLEYALV  163 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~-i~~~~r~~~~G~~--~g---~~~-~~~~~~~~~~~i~~~~~~~~~~~  163 (286)
                      +|.+|+|+|++||||||++++|++.+..+.+. ....-+.......  .+   .++ ..++...+...+..  .+.... 
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~l~~~~-   96 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISC--WMESAR-   96 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHH--HHHHHT-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHH--HHhCCC-
Confidence            38999999999999999999999976322111 1100000000000  00   000 00122222221100  000000 


Q ss_pred             cccccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCC---HHHHH-HHHHH
Q 043263          164 YGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTEN---REELL-VRIAT  239 (286)
Q Consensus       164 ~~~~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t---~~~i~-~rl~~  239 (286)
                      .   +.... .+.. ......++++|-...  ..+.+...++.++++|.+ .+...+|+..|+...   ...+. +....
T Consensus        97 ~---~~~~~-~~~~-~~~~~~vi~eg~~~~--~~~~~~~~~d~~i~l~~~-~~~~~~R~~~R~~~~e~~~~~~~~~~~~~  168 (207)
T 2qt1_A           97 H---SVVST-DQES-AEEIPILIIEGFLLF--NYKPLDTIWNRSYFLTIP-YEECKRRRSTRVYQPPDSPGYFDGHVWPM  168 (207)
T ss_dssp             T---SSCCC-------CCCCEEEEECTTCT--TCGGGTTTCSEEEEEECC-HHHHHHHHHHSCCSSCCCTTHHHHTHHHH
T ss_pred             C---CCcCC-Ceee-cCCCCEEEEeehHHc--CcHHHHHhcCeeEEEECC-HHHHHHHHHHcCCCccchHHHHHHHHhHH
Confidence            0   00000 0011 223445666664211  012233456788999997 667778887764211   11122 22222


Q ss_pred             HHHH-hhccCCCcEEE-ECCCCCHHHHHHHHHHHHHH
Q 043263          240 AREE-VQHVKNFDYVV-VNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       240 ~~~~-~~~~~~~d~vi-v~~~G~i~~~~~~l~~~i~~  274 (286)
                      .... ......+|+++ ++++++++++.+++.+.+..
T Consensus       169 ~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          169 YLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             HHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            1111 12234567664 45667899999999888753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.06  E-value=3.7e-11  Score=94.69  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             hHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           70 LRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        70 ~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..++++.|+.  ++.++++.+.+ |++++|+||||||||||+++|++++
T Consensus        10 ~~~~~~~~g~~~~l~~vsl~i~~-Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           10 DEFSMLRFGKKFAEILLKLHTEK-AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSS-CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhccccccCC-CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3566777764  56677777777 9999999999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.06  E-value=2e-10  Score=99.33  Aligned_cols=165  Identities=13%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhc-----cchhhhh-eec
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK-----NELLEYA-LVY  164 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~-----~~~~~~~-~~~  164 (286)
                      ++.++.|+|||||||||+++.|+..++...                    ..++.+.++.....     ..+.++. .++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~--------------------~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~   91 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNV--------------------IVIDNDTFKQQHPNFDELVKLYEKDVVKHV   91 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCC--------------------EEECTHHHHTTSTTHHHHHHHHGGGCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCe--------------------EEEechHhHHhchhhHHHHHHccchhhhhh
Confidence            378999999999999999999987653111                    11222222211100     0011111 112


Q ss_pred             ccccCc-cHHHHHHHHhcCCcEEEEeCHHHHH---HHHHHhCC---CcEEEEEecCCHHHH----HHHHHHh-------c
Q 043263          165 GDYKGI-PKKQIREYMAKGYDIVLRVDIQGAR---TLRRILGD---SAVFVFLAAESEMAL----VERLVER-------K  226 (286)
Q Consensus       165 ~~~~~~-~~~~i~~~~~~g~~~v~~~~~q~v~---iaral~~~---~~~~Illd~~~~~~l----~~rl~~r-------~  226 (286)
                      ++.++. ....+...+..|.++++++..+...   ..+..+..   +..+++++.+ .+..    .+|+.+|       +
T Consensus        92 ~~~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~  170 (287)
T 1gvn_B           92 TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTA  170 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             hHHHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCC
Confidence            233332 3345666778899999986543221   22222211   2234566665 4444    6777543       1


Q ss_pred             CCC----HHHHHHHHHHHHHHhhccCCCcEEEECCCCC------HHHHHHHHHHHHHHHH
Q 043263          227 TEN----REELLVRIATAREEVQHVKNFDYVVVNAEGK------LDSAVKLVESVIDAEK  276 (286)
Q Consensus       227 ~~t----~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~------i~~~~~~l~~~i~~~~  276 (286)
                      +.+    ...+..++..+..+......+|+++++++..      ++....++.+++...+
T Consensus       171 R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~  230 (287)
T 1gvn_B          171 RATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKEL  230 (287)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHH
Confidence            222    2445677777766665567899998887631      2233334555555544

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.05  E-value=1.2e-09  Score=86.37  Aligned_cols=67  Identities=19%  Similarity=0.192  Sum_probs=44.3

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCC---C--HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTE---N--REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~---t--~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .++.+|+|+++ .+.+.+|+.+|...   +  ...+..++....+.  +.. +|.++ +++++++++.++|.+.+..
T Consensus        92 ~~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~--~~~-~~~~i-~~~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A           92 SRGTTVFIDIP-FEVFLERCKDSKERPLLKRPLDEIKNLFEERRKI--YSK-ADIKV-KGEKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             TTSEEEEEECC-HHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHH--HTT-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEECC-HHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHH--HHh-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence            46799999997 78888998764211   1  22344434332221  123 89888 7778999999999888753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.04  E-value=1.8e-11  Score=120.35  Aligned_cols=72  Identities=14%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             CcEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          183 YDIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      ...+++|++||+.+|++++.+|  +-+++||.|+       ...+.+.|.+.  .+.|...|+|+++.       +..||
T Consensus       803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~-------i~~AD  875 (916)
T 3pih_A          803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV-------IKNAD  875 (916)
T ss_dssp             STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCS
T ss_pred             ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HHhCC
Confidence            3568899999999999998665  3455555544       45555554432  24488888999987       46799


Q ss_pred             EEEEC------CCCCH
Q 043263          252 YVVVN------AEGKL  261 (286)
Q Consensus       252 ~viv~------~~G~i  261 (286)
                      +|+++      ++|++
T Consensus       876 rIivLgp~gg~~~G~I  891 (916)
T 3pih_A          876 HIIDLGPEGGKEGGYI  891 (916)
T ss_dssp             EEEEEESSSGGGCCEE
T ss_pred             EEEEecCCCCCCCCEE
Confidence            99999      66654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.04  E-value=4e-09  Score=87.28  Aligned_cols=164  Identities=17%  Similarity=0.213  Sum_probs=85.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccC-CCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~-~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|..|+|+|++||||||+++.|+..+....++....-+. ...+.-.|        ..+...+..+...     ..   .
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g--------~~i~~~~~~g~~~-----~~---~   67 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG--------LEAKSIIESGNFV-----GD---E   67 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC--------HHHHHHHHHTCCC-----CH---H
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH--------HHHHHHHHCCCcC-----CH---H
Confidence            377899999999999999999998764222211100000 00000000        0111111111100     00   0


Q ss_pred             ccHHHHHHHHhc---CCcEEEEeCH------HHHH-HHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------------
Q 043263          170 IPKKQIREYMAK---GYDIVLRVDI------QGAR-TLRRILGDSAVFVFLAAESEMALVERLVERKT------------  227 (286)
Q Consensus       170 ~~~~~i~~~~~~---g~~~v~~~~~------q~v~-iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------------  227 (286)
                      ...+.+...+..   +..+++++-.      ..+. ++...-..|+.+|+|+.+ .+.+.+|+..|..            
T Consensus        68 ~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~  146 (217)
T 3be4_A           68 IVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRCTHPASGRIYHVKY  146 (217)
T ss_dssp             HHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTT
T ss_pred             HHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCccccCcccccc
Confidence            111223333332   6677887532      1111 111222357799999997 7888899987631            


Q ss_pred             ---------------------CCHHHHHHHHHHHHHHhhc----cC-CCcEEEECCCCCHHHHHHHHHHH
Q 043263          228 ---------------------ENREELLVRIATAREEVQH----VK-NFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       228 ---------------------~t~~~i~~rl~~~~~~~~~----~~-~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                                           ...+.+.+++.........    .. ....+.++.+++++++.++|.+.
T Consensus       147 ~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~  216 (217)
T 3be4_A          147 NPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI  216 (217)
T ss_dssp             BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred             CCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence                                 1356677777755443221    12 23345567777899999988765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.03  E-value=7.6e-09  Score=86.72  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=54.8

Q ss_pred             HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH----HHhc-CCCHHHHHHHHHH-HHHHhhc----cC
Q 043263          179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERL----VERK-TENREELLVRIAT-AREEVQH----VK  248 (286)
Q Consensus       179 ~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl----~~r~-~~t~~~i~~rl~~-~~~~~~~----~~  248 (286)
                      +..+..+++++....    ..++...+++|||+++ .+.+.+|+    .+|+ ..+.+.+..++.. +..+..+    ..
T Consensus       132 ~~~~~~~v~~g~~~~----~~~l~~~d~vi~L~a~-~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~  206 (236)
T 1q3t_A          132 IAQQGGIVMDGRDIG----TVVLPQAELKIFLVAS-VDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLK  206 (236)
T ss_dssp             HHTTSCEEEECSSCS----SSSGGGCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCS
T ss_pred             hcccCCEEEECCcch----hhhccCCCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccc
Confidence            345556777654210    0123355789999997 66666776    4555 3366666666654 3333321    22


Q ss_pred             -CCcEEEECCCC-CHHHHHHHHHHHHHH
Q 043263          249 -NFDYVVVNAEG-KLDSAVKLVESVIDA  274 (286)
Q Consensus       249 -~~d~viv~~~G-~i~~~~~~l~~~i~~  274 (286)
                       .+|.+++++++ +++++.++|.++++.
T Consensus       207 ~~~d~~vId~~~~s~eev~~~I~~~l~~  234 (236)
T 1q3t_A          207 QAEDAVYLDTTGLNIQEVVEKIKAEAEK  234 (236)
T ss_dssp             CCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence             34535556655 899999999988764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.03  E-value=1e-09  Score=91.39  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      +|+|+|++||||||+++.|+..++...+.....-|.+..+   |..+    ...++..+..+.+...        ....+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~---~~~~----g~~i~~~~~~g~~~~~--------~~~~~   66 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG---GTEL----GKKAKEFIDRGDLVPD--------DITIP   66 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT---TCHH----HHHHHHHHTTTCCCCH--------HHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc---CCHH----HHHHHHHHHcCCcCcH--------HHHHH
Confidence            6899999999999999999987642222211111211100   0000    1112222222211110        11123


Q ss_pred             HHHHHHhc--CCcEEEEeCHHH---HHHHHHH----hCCCcEEEEEecCCHHHHHHHHHHhcCC----------------
Q 043263          174 QIREYMAK--GYDIVLRVDIQG---ARTLRRI----LGDSAVFVFLAAESEMALVERLVERKTE----------------  228 (286)
Q Consensus       174 ~i~~~~~~--g~~~v~~~~~q~---v~iaral----~~~~~~~Illd~~~~~~l~~rl~~r~~~----------------  228 (286)
                      .+...+..  +..+++++-...   +..+..+    -..|+.+|+|+.+ .+.+.+|+..|+..                
T Consensus        67 ~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~  145 (223)
T 2xb4_A           67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRRICKNNPNHPNNIFIDAIK  145 (223)
T ss_dssp             HHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBCEESSCTTSCCBTTCGGGC
T ss_pred             HHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcccCCccccCCccccccCCCc
Confidence            34555555  788888863211   2222221    1257789999997 77888999877420                


Q ss_pred             -------------------CHH-HHHHHHHHHHHHh----h----ccCC-----CcEEEECCCCCHHHHHHHHHHHH
Q 043263          229 -------------------NRE-ELLVRIATAREEV----Q----HVKN-----FDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       229 -------------------t~~-~i~~rl~~~~~~~----~----~~~~-----~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                                         +.+ .+.+|+.......    +    +...     ...+.++.+++++++.++|.+.+
T Consensus       146 ~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          146 PNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             CBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                               135 6777775543221    1    1121     23456677789999999998765

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.03  E-value=1.5e-11  Score=119.98  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CcEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          183 YDIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      ...+++|++||+.+|++++.+|  +-+++||.|+       ...+.+.|.+.  .+.+...++|+++.       +..||
T Consensus       728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~-------i~~aD  800 (842)
T 2vf7_A          728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV-------VAASD  800 (842)
T ss_dssp             GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCS
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-------HHhCC
Confidence            3467789999999999999763  4555555554       44555544432  24477888998877       46799


Q ss_pred             EEEEC------CCCCH
Q 043263          252 YVVVN------AEGKL  261 (286)
Q Consensus       252 ~viv~------~~G~i  261 (286)
                      +|+++      ++|++
T Consensus       801 rii~L~p~~g~~~G~I  816 (842)
T 2vf7_A          801 WVLDIGPGAGEDGGRL  816 (842)
T ss_dssp             EEEEECSSSGGGCCSE
T ss_pred             EEEEECCCCCCCCCEE
Confidence            99999      46765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.02  E-value=2.3e-09  Score=88.12  Aligned_cols=51  Identities=20%  Similarity=0.029  Sum_probs=36.1

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhc---CCCHHHHHHHHHH-HHH----HhhccCCCcEEE
Q 043263          203 DSAVFVFLAAESEMALVERLVERK---TENREELLVRIAT-ARE----EVQHVKNFDYVV  254 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~---~~t~~~i~~rl~~-~~~----~~~~~~~~d~vi  254 (286)
                      ..+..|++|++ .+...+|+.+|.   +.+.+.+.+++.. +..    ..+....||.||
T Consensus       147 ~~d~~i~vd~~-~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi  205 (208)
T 3c8u_A          147 IWDVSIRLEVP-MADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTW  205 (208)
T ss_dssp             TCSEEEEECCC-HHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEE
T ss_pred             hcCEEEEEeCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEe
Confidence            34788999998 556556666552   4588999888874 555    345567899887

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.01  E-value=9.3e-09  Score=82.80  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      |.+|+|+|++||||||+++.|+..+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999999998653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.01  E-value=1.9e-09  Score=85.41  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=40.9

Q ss_pred             hCCCcEEEEEecCCHHHHHHHHHHhc-----CCC-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          201 LGDSAVFVFLAAESEMALVERLVERK-----TEN-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       201 ~~~~~~~Illd~~~~~~l~~rl~~r~-----~~t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      +..+..+|+|+++ .+.+.+|+.+|.     ..+ ...+...+....+.  +...+|.+|.++ ++++++.++|.+.+
T Consensus        94 l~~~~~vi~l~~~-~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~--~~~~a~~~Id~~-~~~e~~~~~I~~~l  167 (168)
T 1zuh_A           94 LKGLGTTFYLKMD-FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQAL--YEKNASFIIDAR-GGLNNSLKQVLQFI  167 (168)
T ss_dssp             GTTSEEEEEEECC-HHHHHHHHCC--------CCTTHHHHHHHHHHHHH--HHHTCSEEEEGG-GCHHHHHHHHHHC-
T ss_pred             HhcCCEEEEEECC-HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHH--HHHHCCEEEECC-CCHHHHHHHHHHHh
Confidence            3456789999997 788889987651     112 23343333332211  124578887655 58999999887654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.01  E-value=7.8e-09  Score=82.79  Aligned_cols=155  Identities=17%  Similarity=0.141  Sum_probs=75.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHH----HHHHhhccchhhhheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE----FLQMVDKNELLEYALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~  166 (286)
                      +|.+|+|+|++||||||+++.|+..+..                    .+. .+.+.    ++..+..+.  ........
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~--------------------~~i-~d~~~~g~~i~~~~~~g~--~~~~~~~~   60 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPG--------------------SFV-FEPEEMGQALRKLTPGFS--GDPQEHPM   60 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTT--------------------CEE-CCTHHHHHHHHHTSTTCC--SCGGGSTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCC--------------------CEE-EchhhhHHHHHHhCcccc--chhhhhHH
Confidence            4789999999999999999999977541                    111 01111    222111000  00000000


Q ss_pred             ccCccHHHHHHHHhc-CCcEEEEeCH----HH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHH
Q 043263          167 YKGIPKKQIREYMAK-GYDIVLRVDI----QG---ARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELLVR  236 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~-g~~~v~~~~~----q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~r  236 (286)
                      ......+.+...+.. |..++++...    .+   ...++. .......|+|+++ .+.+.+|+.+|..  .....+...
T Consensus        61 ~~~~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~~~~~i~l~~~-~e~~~~R~~~R~~r~~~~~~~~~~  138 (183)
T 2vli_A           61 WIPLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKD-RGLSVHHFTLIAP-LNVVLERLRRDGQPQVNVGTVEDR  138 (183)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHH-TTCCCEEEEEECC-HHHHHHHHHTC----CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHh-cCCceEEEEEeCC-HHHHHHHHHhccccchhHHHHHHH
Confidence            000112334445554 6667777532    11   122222 1223455889986 8888899987753  233333222


Q ss_pred             HHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          237 IATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       237 l~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      +..    .+....++ +|-+++++++++.++|.+.+...
T Consensus       139 ~~~----~~~~~~~~-~Id~~~~~~~~~~~~I~~~l~~~  172 (183)
T 2vli_A          139 LNE----LRGEQFQT-HIDTAGLGTQQVAEQIAAQVGLT  172 (183)
T ss_dssp             HHH----HTSGGGCS-EEECTTCCHHHHHHHHHHHHTCC
T ss_pred             HHh----hcccccce-EeeCCCCCHHHHHHHHHHHHHHh
Confidence            221    11112345 55444478999999998888643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.00  E-value=6.2e-10  Score=89.24  Aligned_cols=26  Identities=35%  Similarity=0.393  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|++|+|+|++||||||++++|++.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999999876

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.00  E-value=4.1e-12  Score=112.15  Aligned_cols=46  Identities=22%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             hHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           70 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        70 ~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++++| |...+.++++.+.+ |++++|+|||||||||++++|+++++
T Consensus       151 ~~~v~f-y~~~l~~l~~~i~~-g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          151 YNLLDN-KEQAISAIKDGIAI-GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TTTSTT-HHHHHHHHHHHHHH-TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             cCchhh-HHHHHhhhhhhccC-CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            444444 41134455555555 99999999999999999999999986

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.00  E-value=4.7e-09  Score=84.09  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhh-eecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYA-LVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~  170 (286)
                      +.+|+|+|++||||||+++.|+..++                    ..  +++.+.+....  ..+.... ..+...+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~--------------------~~--~~~~d~~~~~~--~~~~~~~~~~~~~~~~~   66 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG--------------------LK--YINVGDLAREE--QLYDGYDEEYDCPILDE   66 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC--------------------CE--EEEHHHHHHHH--TCEEEEETTTTEEEECH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC--------------------Ce--EEEHHHHHhhc--chhhhhhhhhcCccCCh
Confidence            67899999999999999999997653                    11  12222211110  0000000 000000000


Q ss_pred             --cHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHH
Q 043263          171 --PKKQIREYMAKGYDIVLRVDIQGARTLRRILGD--SAVFVFLAAESEMALVERLVERKTENREELLV-----RIATAR  241 (286)
Q Consensus       171 --~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~--~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~-----rl~~~~  241 (286)
                        ..+.+...+..|..+ ++...      +.++..  +..+|||+++ .+.+.+|+.+|+. +...+..     .+....
T Consensus        67 ~~~~~~~~~~~~~g~~v-v~~~~------~~~~~~~~~~~vi~L~~~-~e~l~~R~~~r~~-~~~~~~~~~~~~~~~~~~  137 (180)
T 3iij_A           67 DRVVDELDNQMREGGVI-VDYHG------CDFFPERWFHIVFVLRTD-TNVLYERLETRGY-NEKKLTDNIQCEIFQVLY  137 (180)
T ss_dssp             HHHHHHHHHHHHHCCEE-EECSC------CTTSCGGGCSEEEEEECC-HHHHHHHHHHTTC-CHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHhcCCEE-EEech------hhhcchhcCCEEEEEECC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHH
Confidence              122344455555444 33321      111211  5789999997 8889899998853 3322222     122222


Q ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .+......+|.++..++.+++++...+.+++..
T Consensus       138 ~~~~~~y~~~~~i~~~~~~~~ev~~~v~~i~~~  170 (180)
T 3iij_A          138 EEATASYKEEIVHQLPSNKPEELENNVDQILKW  170 (180)
T ss_dssp             HHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence            222212236888877777888885555444444

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.98  E-value=6.5e-11  Score=97.52  Aligned_cols=67  Identities=19%  Similarity=0.136  Sum_probs=42.9

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCC------C----HHHHHHHHHHHHHHhhccC-CCcEEEECCCCCHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTE------N----REELLVRIATAREEVQHVK-NFDYVVVNAEGKLDSAVKLVES  270 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~------t----~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i~~~~~~l~~  270 (286)
                      .++.+|+|+.+ .+.+.+|+.+|++.      +    ...+..++..+..+..... .++.++++++++++++.++|.+
T Consensus       132 ~~d~~i~l~~~-~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          132 KPDWQVLLAVS-AELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             BCEEEEEEEEE-HHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred             CCCEEEEEeCC-HHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence            57788889987 77888999877431      1    1355566655544332111 2465677777889888887743

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.94  E-value=1.8e-09  Score=91.17  Aligned_cols=25  Identities=40%  Similarity=0.647  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++++++|+|||||||||++++|+..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999944

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.94  E-value=2.4e-09  Score=88.55  Aligned_cols=175  Identities=11%  Similarity=0.080  Sum_probs=96.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-----hhhhheecc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-----LLEYALVYG  165 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~  165 (286)
                      +|.+|++.|++||||||+++.|...+.. .   ...++.|..|.-.|        +.++..+....     ..+...+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~---~~~~~ep~~~t~~g--------~~ir~~l~~~~~~~~~~~~~llf~a   71 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP-N---CKLLKFPERSTRIG--------GLINEYLTDDSFQLSDQAIHLLFSA   71 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS-S---EEEEESSCTTSHHH--------HHHHHHHHCTTSCCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc-c---ceEEEecCCCChHH--------HHHHHHHHhcccCCCHHHHHHHHHH
Confidence            5899999999999999999999988753 1   11233342222111        12222222111     111122222


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCH------HH--------HHHHHH---HhCCCcEEEEE-ecCCHHHHHHHHHHhcC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDI------QG--------ARTLRR---ILGDSAVFVFL-AAESEMALVERLVERKT  227 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~------q~--------v~iara---l~~~~~~~Ill-d~~~~~~l~~rl~~r~~  227 (286)
                      +.+. ..+.|..++..|..+++|--.      |.        +..+..   ....|+++||| |.+.+ ...+|+..+..
T Consensus        72 ~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe-~~~~R~~~~~d  149 (216)
T 3tmk_A           72 NRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVD-NNAEKSGFGDE  149 (216)
T ss_dssp             HHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCS-CGGGCCSSSCC
T ss_pred             HHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHH-HHHHHhccCcc
Confidence            2222 234677777888877775211      11        112222   12468999999 99854 44466543211


Q ss_pred             -CCHHHHHHHHHHHHHHhhcc----CCCcEEEEC-CCCCHHHHHHHHHHHHHHHHhcc
Q 043263          228 -ENREELLVRIATAREEVQHV----KNFDYVVVN-AEGKLDSAVKLVESVIDAEKAKV  279 (286)
Q Consensus       228 -~t~~~i~~rl~~~~~~~~~~----~~~d~viv~-~~G~i~~~~~~l~~~i~~~~~~~  279 (286)
                       ........++.....+....    .....++++ .+++++++.++|.+.+.......
T Consensus       150 r~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~~  207 (216)
T 3tmk_A          150 RYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTH  207 (216)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence             11234445555444332211    234456666 67899999999999999876543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.94  E-value=3.1e-10  Score=92.94  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+++|+|++||||||++++|++.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999999998764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.94  E-value=3.1e-09  Score=87.67  Aligned_cols=162  Identities=15%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccH
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPK  172 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (286)
                      .|+|+|++||||||+++.|+..++...++.....|.. ..|...|..+        +..+..+.+...        ....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i--------~~~~~~g~~~~~--------~~~~   65 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQA--------KDIMDAGKLVTD--------ELVI   65 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGG--------HHHHHHTCCCCH--------HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHH--------HHHHHCCCcCCH--------HHHH
Confidence            5899999999999999999986642222222111110 0111111111        011111110000        0111


Q ss_pred             HHHHHHHhc---CCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhc--------------------
Q 043263          173 KQIREYMAK---GYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVERK--------------------  226 (286)
Q Consensus       173 ~~i~~~~~~---g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~--------------------  226 (286)
                      +.+...+..   +..+++++-.   .....+...-..++.+|+||.+ .+.+.+|+..|.                    
T Consensus        66 ~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~  144 (214)
T 1e4v_A           66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVP-DELIVDRIVGRRVHAPSGRVYHVKFNPPKVEG  144 (214)
T ss_dssp             HHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTBCCSSTT
T ss_pred             HHHHHHHhccccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHCCcccCCcCCcccccCCCCCccc
Confidence            223333332   2346666532   1112222221256889999997 778889987653                    


Q ss_pred             -------------CCCHHHHHHHHHHHHHHhhc----cCC------CcEEEECCCCCHHHHHHHHHHHH
Q 043263          227 -------------TENREELLVRIATAREEVQH----VKN------FDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       227 -------------~~t~~~i~~rl~~~~~~~~~----~~~------~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                                   ..+.+.+.+|+..+......    ...      ...+.++.+++++++.++|.+.+
T Consensus       145 ~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          145 KDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             BCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                         12456778888765543221    111      12455667778999999988765

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.93  E-value=4.9e-08  Score=80.72  Aligned_cols=166  Identities=20%  Similarity=0.246  Sum_probs=85.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      +|.+|+|+|++||||||+++.|+..+....+......+.. ..    |.++    ...+...+..+.....        .
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~----~~~~----g~~i~~~~~~g~~~~~--------~   66 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAK----GTQL----GLEAKKIMDQGGLVSD--------D   66 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT----TCHH----HHHHHHHHHTTCCCCH--------H
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHc----CChH----HHHHHHHHHCCCcCCH--------H
Confidence            4788999999999999999999987642111111000000 00    0000    0011111111110000        0


Q ss_pred             ccHHHHHHHHh----cCCcEEEEeC---H-HHHH---HHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC-----------
Q 043263          170 IPKKQIREYMA----KGYDIVLRVD---I-QGAR---TLRRILGDSAVFVFLAAESEMALVERLVERKT-----------  227 (286)
Q Consensus       170 ~~~~~i~~~~~----~g~~~v~~~~---~-q~v~---iaral~~~~~~~Illd~~~~~~l~~rl~~r~~-----------  227 (286)
                      .....+.+.+.    .+..+++++-   . |...   ++...-..++.+|+||.+ .+.+.+|+..|..           
T Consensus        67 ~~~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r~~~~~~g~~y~~~  145 (220)
T 1aky_A           67 IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGRLIHPASGRSYHKI  145 (220)
T ss_dssp             HHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETT
T ss_pred             HHHHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCCCccCccCCccccc
Confidence            01122333332    3456777752   1 1111   111122356689999997 7888899876531           


Q ss_pred             ----------------------CCHHHHHHHHHHHHHHhhc----cCCCc-EEEECCCCCHHHHHHHHHHHHH
Q 043263          228 ----------------------ENREELLVRIATAREEVQH----VKNFD-YVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       228 ----------------------~t~~~i~~rl~~~~~~~~~----~~~~d-~viv~~~G~i~~~~~~l~~~i~  273 (286)
                                            .+.+.+.+|+.........    ....+ .+.++.+++++++.++|.+.+.
T Consensus       146 ~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          146 FNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             TBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             cCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                                  2356677777665443221    11123 4555666789999999988764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.92  E-value=1.8e-08  Score=82.34  Aligned_cols=86  Identities=21%  Similarity=0.206  Sum_probs=53.5

Q ss_pred             CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hc-cCCCcEEEECCCC-
Q 043263          183 YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV-QH-VKNFDYVVVNAEG-  259 (286)
Q Consensus       183 ~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~-~~-~~~~d~viv~~~G-  259 (286)
                      ..+++++....    ..+....+++|||+++ .+.+.+|+.++.+.+.+.+..++....... .. ...+|.+++++++ 
T Consensus       119 ~~~vi~g~~~~----~~~~~~~d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~  193 (208)
T 3ake_A          119 PPFVAEGRDMG----TAVFPEAAHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGM  193 (208)
T ss_dssp             SCEEEEESSCC----CCCCTTCSEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTS
T ss_pred             CCEEEEcccee----EEEecCCcEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCC
Confidence            35666664211    1123456789999997 778888888876556666666555322111 11 2457745556666 


Q ss_pred             CHHHHHHHHHHHHH
Q 043263          260 KLDSAVKLVESVID  273 (286)
Q Consensus       260 ~i~~~~~~l~~~i~  273 (286)
                      +++++.++|.++++
T Consensus       194 ~~ee~~~~I~~~~~  207 (208)
T 3ake_A          194 TLDEVVAWVLAHIR  207 (208)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            89999999988764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.92  E-value=3.2e-10  Score=102.52  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++|+|+||||||||+++|+|++.
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            999999999999999999999876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.91  E-value=6.9e-09  Score=82.32  Aligned_cols=69  Identities=16%  Similarity=0.125  Sum_probs=44.0

Q ss_pred             CcEEEEEecCCHHHHHHHHH--Hh-cC---CCHHHHHHHHHHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLV--ER-KT---ENREELLVRIATAREEVQH-VKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~--~r-~~---~t~~~i~~rl~~~~~~~~~-~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      +..+|+|+++ .+.+.+|+.  .| ..   ........++..+...... ...+|.+|.+++++++++.++|.+.++
T Consensus        94 ~~~~i~l~~~-~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A           94 HGTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             HSEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEEECC-HHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence            4789999987 788889998  66 21   1223334445544433221 122787776555789999999887764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.91  E-value=1.4e-08  Score=84.41  Aligned_cols=160  Identities=15%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc----hhhhheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE----LLEYALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~  166 (286)
                      ++.+|+|+|++||||||+++.|+..+....++..                     +.++.....+.    .+......+.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d---------------------~~~~~~~~~~~~~g~~i~~~~~~g~   64 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG---------------------DLLRDNMLRGTEIGVLAKAFIDQGK   64 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH---------------------HHHHHHHHHTCHHHHHHHHHHTTTC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEech---------------------HHHHHhhhcCChHHHHHHHHHHcCC
Confidence            4788999999999999999999976542111111                     11111110000    0000000011


Q ss_pred             ccCccH----HHHHHHHh--cCCcEEEEeCHHHHHHHHHH--hCCCcEEEEEecCCHHHHHHHHHHhc------------
Q 043263          167 YKGIPK----KQIREYMA--KGYDIVLRVDIQGARTLRRI--LGDSAVFVFLAAESEMALVERLVERK------------  226 (286)
Q Consensus       167 ~~~~~~----~~i~~~~~--~g~~~v~~~~~q~v~iaral--~~~~~~~Illd~~~~~~l~~rl~~r~------------  226 (286)
                        ....    ..+.+.+.  .+..+++++....+..+..+  +..++.+|+||.+ .+.+.+|+..|.            
T Consensus        65 --~~~~~~~~~~~~~~l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~-~~~~~~R~~~R~~~~~~~~~y~~~  141 (227)
T 1zd8_A           65 --LIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVP-FEVIKQRLTARWIHPASGRVYNIE  141 (227)
T ss_dssp             --CCCHHHHHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECC-HHHHHHHHTCEEEETTTTEEEETT
T ss_pred             --cCCHHHHHHHHHHHHhcccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHcCcCCCccCCccccc
Confidence              0111    11223333  25567777632112222222  2467899999997 778888987542            


Q ss_pred             ---------------------CCCHHHHHHHHHHHHHHhhcc-CCC---c-EEEECCCCCHHHHHHHHHHHHHHH
Q 043263          227 ---------------------TENREELLVRIATAREEVQHV-KNF---D-YVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       227 ---------------------~~t~~~i~~rl~~~~~~~~~~-~~~---d-~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                                           ..+.+.+.+|+.........+ ..+   + .+.++.+ ++++++++|.+++...
T Consensus       142 ~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~  215 (227)
T 1zd8_A          142 FNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK  215 (227)
T ss_dssp             TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred             cCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence                                 124567777776554332211 111   2 4555555 8999999999988654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.91  E-value=1.1e-08  Score=83.18  Aligned_cols=71  Identities=17%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHH-hhcc--CCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTENRE-----ELLVRIATAREE-VQHV--KNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~t~~-----~i~~rl~~~~~~-~~~~--~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ..+..+|+|+++ .+.+.+|+.+|+. ..+     ....++..+..+ .+..  ..++.+| +.+++++++.++|.+.+.
T Consensus       123 ~~~d~vi~L~~~-~e~~~~Rl~~R~r-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~I-d~~~~~~~v~~~I~~~l~  199 (205)
T 2jaq_A          123 LSFDIVIYLRVS-TKTAISRIKKRGR-SEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVV-DAELDVKTQIELIMNKLN  199 (205)
T ss_dssp             CCCSEEEEEECC-HHHHHHHHHHHTC-HHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEE-ETTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCC-HHHHHHHHHHcCC-hhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEE-ECCCCHHHHHHHHHHHHH
Confidence            357789999997 7888899987753 222     334555555443 2222  3355554 566799999999998886


Q ss_pred             HH
Q 043263          274 AE  275 (286)
Q Consensus       274 ~~  275 (286)
                      ..
T Consensus       200 ~~  201 (205)
T 2jaq_A          200 SI  201 (205)
T ss_dssp             HC
T ss_pred             Hh
Confidence            53

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.90  E-value=1.1e-08  Score=87.01  Aligned_cols=159  Identities=16%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ++.+|+|+|++||||||+++.|+..+..                 .|..+..++.+.++..+..  +...  ........
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~-----------------~g~~~i~~~~D~~~~~l~~--~~~~--~e~~~~~~   61 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSK-----------------NNIDVIVLGSDLIRESFPV--WKEK--YEEFIKKS   61 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-----------------TTCCEEEECTHHHHTTSSS--CCGG--GHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHh-----------------CCCEEEEECchHHHHHHhh--hhHH--HHHHHHHH
Confidence            4789999999999999999999976320                 0222211233333322111  1000  00000111


Q ss_pred             cHHHHHHHHhcCCcEEEEeC---HHHHHHHHH---HhCCCcEEEEEecCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 043263          171 PKKQIREYMAKGYDIVLRVD---IQGARTLRR---ILGDSAVFVFLAAESEMALVERLVERKTE-NREELLVRIATAREE  243 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iara---l~~~~~~~Illd~~~~~~l~~rl~~r~~~-t~~~i~~rl~~~~~~  243 (286)
                      ....+...+.. ..+++++.   ......+..   ....+..+|+|+++ .+.+.+|+.+|+.. +.+.+.. +.....+
T Consensus        62 ~~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~-~~~~~e~  138 (260)
T 3a4m_A           62 TYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKK-MYEKFDE  138 (260)
T ss_dssp             HHHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHH-HHHHCCC
T ss_pred             HHHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHH-HHHHhcC
Confidence            12334455555 56666642   111111111   13356788999986 88888999887632 3333332 2211111


Q ss_pred             hh-cc--CCCcEEEECCCC--CHHHHHHHHHHHHHH
Q 043263          244 VQ-HV--KNFDYVVVNAEG--KLDSAVKLVESVIDA  274 (286)
Q Consensus       244 ~~-~~--~~~d~viv~~~G--~i~~~~~~l~~~i~~  274 (286)
                      .. ..  ..++.+| +.++  +++++.++|.+.+..
T Consensus       139 ~~~~~~~~~~~~~I-d~~~~~~~~ei~~~I~~~l~~  173 (260)
T 3a4m_A          139 PGKKYKWDEPFLII-DTTKDIDFNEIAKKLIEKSKE  173 (260)
T ss_dssp             TTSSCGGGCCSEEE-ETTSCCCHHHHHHHHHHHHTS
T ss_pred             ccccCCCCCCEEEE-eCCCCCCHHHHHHHHHhcccC
Confidence            00 00  2345554 5444  688888888776653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.90  E-value=4.7e-09  Score=87.27  Aligned_cols=166  Identities=12%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCC-CCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPM-RPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~-~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      .+.+||+|++||||||+++.|+..+...+++....-|.. ..|    .++    ...+...+..+.++..        .+
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~----t~l----G~~i~~~~~~G~lvpd--------ei   71 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAG----TPL----GVEAKTYMDEGKLVPD--------SL   71 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTT----CHH----HHHHHHHHTTTCCCCH--------HH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCC----ChH----HHHHHHHHhhcccccc--------HH
Confidence            467999999999999999999987642222211110000 000    000    0011111111111111        01


Q ss_pred             cHHHHHHHHhc---CCcEEEEeCHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc------------------
Q 043263          171 PKKQIREYMAK---GYDIVLRVDIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERK------------------  226 (286)
Q Consensus       171 ~~~~i~~~~~~---g~~~v~~~~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~------------------  226 (286)
                      ..+.+.+.+.+   ....+++|-+..+..|.++   ...++.+|+||.+ .+.+.+|+..|.                  
T Consensus        72 ~~~ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~  150 (230)
T 3gmt_A           72 IIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVP-FSEIIERMSGRRTHPASGRTYHVKFNPPKV  150 (230)
T ss_dssp             HHHHHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCC-HHHHHHHHHTEEEETTTTEEEETTTBCCSS
T ss_pred             HHHHHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCC-HHHHHHHHHcCCcccccCCcccccCCCCCc
Confidence            12233333432   3467888754333333332   2357899999997 888889998763                  


Q ss_pred             ---------------CCCHHHHHHHHHHHHHHhhcc----CC------------CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          227 ---------------TENREELLVRIATAREEVQHV----KN------------FDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       227 ---------------~~t~~~i~~rl~~~~~~~~~~----~~------------~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                                     ..+.+.|.+|+..+.....++    ..            .-.+.|+.++++++++++|.+++.+
T Consensus       151 ~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          151 EGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             cCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence                           126788999998776543221    11            2345567778999999999887754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.90  E-value=4.8e-08  Score=80.57  Aligned_cols=90  Identities=20%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             HhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH----HhcC-CCHHHHHHHHHHHH-HHh-----hcc
Q 043263          179 MAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLV----ERKT-ENREELLVRIATAR-EEV-----QHV  247 (286)
Q Consensus       179 ~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~----~r~~-~t~~~i~~rl~~~~-~~~-----~~~  247 (286)
                      +..+..+++++..    +...++...+++|||+++ .+.+.+|+.    .|+. .+.+.+..++.... .+.     ...
T Consensus       115 ~~~~~~~vi~g~~----~~~~~~~~~~~vi~l~a~-~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~  189 (219)
T 2h92_A          115 LAAEKGIVMDGRD----IGTVVLPDADLKVYMIAS-VEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLR  189 (219)
T ss_dssp             HHTTCCEEEEESS----CCCCCCTTCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSC
T ss_pred             hccCCcEEEEcCC----ccceecCCCCEEEEEECC-HHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccc
Confidence            3455567777631    111244566889999997 777777764    3332 26677777776543 222     222


Q ss_pred             CCCcEEEECCCC-CHHHHHHHHHHHHH
Q 043263          248 KNFDYVVVNAEG-KLDSAVKLVESVID  273 (286)
Q Consensus       248 ~~~d~viv~~~G-~i~~~~~~l~~~i~  273 (286)
                      ..+|.+++++++ +++++.++|.+.++
T Consensus       190 ~~~d~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          190 KADDAVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             CCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence            346744445554 99999999988875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.89  E-value=1.6e-08  Score=80.65  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh-ccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc--c----hhhhheecc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE-SRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN--E----LLEYALVYG  165 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~--~----~~~~~~~~~  165 (286)
                      .+|+|+|++||||||+++.|+. .+.                      +..++.+.++..+...  .    +....  ..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~----------------------~~~i~~d~~r~~~~~~~~~~~~~~~~~~--~~   58 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPG----------------------FYNINRDDYRQSIMAHEERDEYKYTKKK--EG   58 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT----------------------EEEECHHHHHHHHTTSCCGGGCCCCHHH--HH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCC----------------------cEEecHHHHHHHhhCCCccchhhhchhh--hh
Confidence            6799999999999999999997 332                      1223333343332111  0    00000  00


Q ss_pred             cccCccHHHHHHHH---hcCCcEEEEeCH----HHHHHHH--HHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHH
Q 043263          166 DYKGIPKKQIREYM---AKGYDIVLRVDI----QGARTLR--RILGDSAVFVFLAAESEMALVERLVERKT--ENREELL  234 (286)
Q Consensus       166 ~~~~~~~~~i~~~~---~~g~~~v~~~~~----q~v~iar--al~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~  234 (286)
                      ..+....+.+...+   ..|..+++++..    ++-.+..  ...+.+..+|+|+++ .+.+.+|+.+|+.  .+.+.+.
T Consensus        59 ~~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~i~  137 (181)
T 1ly1_A           59 IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLR  137 (181)
T ss_dssp             HHHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccccCCCCHHHHH
Confidence            01111223455566   677888887532    1111111  112234478889975 8888899988763  3666676


Q ss_pred             HHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          235 VRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       235 ~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .++........    .+.++++.+. .+++..++...+..
T Consensus       138 ~~~~~~~~~~~----~~~~~id~~~-~~~v~~~i~~~l~~  172 (181)
T 1ly1_A          138 SMYKSMREYLG----LPVYNGTPGK-PKAVIFDVDGTLAK  172 (181)
T ss_dssp             HHHHHHHHHHT----CCCC---------------------
T ss_pred             HHHHHhhccCC----CCccccCCCC-Cceeeehhhhhhhc
Confidence            66666544321    2322344432 25555556555543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.89  E-value=1.9e-08  Score=82.09  Aligned_cols=169  Identities=17%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch---hhhheecccccCc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL---LEYALVYGDYKGI  170 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~  170 (286)
                      +|+|-|+-||||||.+++|+..+..-+..+. .+|.|. |.    .    ..+.++..+.....   .+...+.... ..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~-~treP~-~t----~----~~~~ir~~l~~~~~~~~~~~ll~~a~r-~~   70 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI-LKREPG-GT----E----TGEKIRKILLEEEVTPKAELFLFLASR-NL   70 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE-EEESSC-SS----H----HHHHHHHHHHHSCCCHHHHHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEECCC-CC----c----HHHHHHHHhhcccCChHHHHHHHHHHH-HH
Confidence            6899999999999999999987643222222 223342 11    1    11222222211111   0101111111 11


Q ss_pred             cHHHHHHHHhcCCcEEEEe---------------CHHHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHH
Q 043263          171 PKKQIREYMAKGYDIVLRV---------------DIQGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKTENREE  232 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~---------------~~q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~  232 (286)
                      ..+.+..++..|..++++-               ....+..+...   ...|+++++||.+ .+...+|..+++......
T Consensus        71 ~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~dr~e~~e  149 (197)
T 3hjn_A           71 LVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKRE  149 (197)
T ss_dssp             HHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CTTCCHH
T ss_pred             HHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcC-hHHHHHhCcCcCccccHH
Confidence            2244667788888877762               11222222111   1368999999998 555667765554433334


Q ss_pred             HHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          233 LLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       233 i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ...++.....+.........++++.+++++++.++|.+.+++
T Consensus       150 f~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~  191 (197)
T 3hjn_A          150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKR  191 (197)
T ss_dssp             HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445554443333211223356667778999999999888754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.89  E-value=8.3e-11  Score=115.36  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=46.9

Q ss_pred             cEEEEeCHHHHHHHHHHhCCC--cEEEEEecCC-------HHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          184 DIVLRVDIQGARTLRRILGDS--AVFVFLAAES-------EMALVERLVER--KTENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       184 ~~v~~~~~q~v~iaral~~~~--~~~Illd~~~-------~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      ..+++|++||+.+|++++.+|  +-+++||.|+       ...+.+.|.+.  .+.+...++|+++.       +..||+
T Consensus       844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-------i~~aDr  916 (972)
T 2r6f_A          844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-------IKTADY  916 (972)
T ss_dssp             GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-------HTTCSE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-------HHhCCE
Confidence            457789999999999999765  3555555544       44555555432  24477788998876       357999


Q ss_pred             EEEC
Q 043263          253 VVVN  256 (286)
Q Consensus       253 viv~  256 (286)
                      |+++
T Consensus       917 IivL  920 (972)
T 2r6f_A          917 IIDL  920 (972)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.88  E-value=1.2e-08  Score=82.06  Aligned_cols=160  Identities=14%  Similarity=0.158  Sum_probs=78.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|.+|+|+|++||||||+++.|++.+..                 .|..+.+++.+.++..+... .+.... ... .+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~-----------------~~~~~~~~~~d~~~~~~~~~~~~~~~~-r~~-~~~   72 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQK-----------------EGYRVEVLDGDWARTTVSEGAGFTREE-RLR-HLK   72 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-----------------TTCCEEEEEHHHHHTTTTTTCCCCHHH-HHH-HHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----------------cCCeEEEeeHHHHHHHHhhccCCChhh-HHH-HHH
Confidence            3899999999999999999999987641                 12223333333333221100 000000 000 000


Q ss_pred             ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHhc-----CCCHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRIL---GDSAVFVFLAAESEMALVERLVERK-----TENREELLVRIA  238 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl~~r~-----~~t~~~i~~rl~  238 (286)
                      .........+..|..++.++.   ......++.++   ..|..+|+||++ .+.+.+|+....     ......+    .
T Consensus        73 ~~~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~~~~~~~~~~~~~~~----~  147 (186)
T 2yvu_A           73 RIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPKGLYKKALKGELENF----T  147 (186)
T ss_dssp             HHHHHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHHHHHHHHHTTCCSSC----H
T ss_pred             HHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhhhhhhHHhhcchhhh----h
Confidence            000011122345656666642   11112223332   236788999997 777777764310     0000000    0


Q ss_pred             HHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          239 TAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       239 ~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ......+....++.+|..++.+++++.++|.+.++.
T Consensus       148 ~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          148 GITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA  183 (186)
T ss_dssp             HHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            000000101246666544446899999999988865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.87  E-value=1.7e-08  Score=81.35  Aligned_cols=25  Identities=40%  Similarity=0.697  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      |++++|+|||||||||++++|++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc
Confidence            6799999999999999999998743

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.87  E-value=3.7e-09  Score=92.02  Aligned_cols=27  Identities=33%  Similarity=0.525  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|++++|+|||||||||++++|++++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            489999999999999999999999986

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.86  E-value=1.4e-10  Score=103.81  Aligned_cols=69  Identities=13%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             EEEeCHHHHHHHHHHh------CCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCc
Q 043263          186 VLRVDIQGARTLRRIL------GDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFD  251 (286)
Q Consensus       186 v~~~~~q~v~iaral~------~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d  251 (286)
                      +++|+.|++.+|++++      .+|+++|+      ||+.+...+.+.|.+.  .+.+...++|+++.       ...||
T Consensus       280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-------~~~~d  352 (365)
T 3qf7_A          280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-------SEAFD  352 (365)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-------HTTCS
T ss_pred             CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-------HHhCC
Confidence            4467889999999987      67777766      5555555666655543  23477778998876       36799


Q ss_pred             EEEECCCCCH
Q 043263          252 YVVVNAEGKL  261 (286)
Q Consensus       252 ~viv~~~G~i  261 (286)
                      +|+++++|++
T Consensus       353 ~~~~l~~G~i  362 (365)
T 3qf7_A          353 RKLRITGGVV  362 (365)
T ss_dssp             CEEEEETTEE
T ss_pred             EEEEEECCEE
Confidence            9999998875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.86  E-value=2.5e-07  Score=77.17  Aligned_cols=72  Identities=11%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhc---------------------------------CCCHHHHHHHHHHHHHHh----h
Q 043263          203 DSAVFVFLAAESEMALVERLVERK---------------------------------TENREELLVRIATAREEV----Q  245 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~---------------------------------~~t~~~i~~rl~~~~~~~----~  245 (286)
                      .++.+|+|+.+ .+.+.+|+..|.                                 ..+.+.+.+|+.......    +
T Consensus       122 ~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~  200 (233)
T 1ak2_A          122 KLDSVIEFSIP-DSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE  200 (233)
T ss_dssp             CCCEEEEEECC-HHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECC-HHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57899999997 788889987662                                 123566777776544321    1


Q ss_pred             ccC-CCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          246 HVK-NFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       246 ~~~-~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ... ....+.++.+++++++.++|.+.++..
T Consensus       201 ~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          201 YYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             HHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            111 122455677789999999999988754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.83  E-value=9e-09  Score=82.65  Aligned_cols=69  Identities=10%  Similarity=0.017  Sum_probs=41.4

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHH--hhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTE---NREELLVRIATAREE--VQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~---t~~~i~~rl~~~~~~--~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ...+|+|+++ .+.+.+|+.+|...   .......++..+...  ..+...+|.+|.+++++++++.++|.+.++
T Consensus        94 ~~~vV~L~~~-~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~  167 (184)
T 2iyv_A           94 GHTVVYLEIS-AAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ  167 (184)
T ss_dssp             TSCEEEEECC-HHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred             CCeEEEEeCC-HHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHh
Confidence            4588999986 88888999876421   111112223333221  111245787775554789999999887764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.82  E-value=4.2e-09  Score=85.02  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|++++|+|||||||||++++|++.+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence            49999999999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.82  E-value=6.5e-09  Score=90.44  Aligned_cols=49  Identities=27%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             HHhHhHHHHhccc--ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           68 ELLRSLEASLGHA--FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        68 i~~~~v~~~~~~~--l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.+...++..  +..+++.+.+ |++++|+|||||||||++++|++++.
T Consensus        75 ~~~~~l~~~l~~~~~~~~l~~~~~~-g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           75 ALKESVLEMLAKKNSKTELQLGFRK-PAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             HHHHHHHHHHCC--CCCSCCCCSSS-CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcccccccccccCC-CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4555666666642  2456676776 99999999999999999999999975

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.78  E-value=3.5e-07  Score=74.74  Aligned_cols=69  Identities=14%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             cEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hc-----------cCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          205 AVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV-QH-----------VKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       205 ~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~-~~-----------~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .+.|||+++ .+.+.+|+.++.+.+...+..++....... .+           ...+|.+|-.++-+++++++.|.+.+
T Consensus       118 ~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i  196 (201)
T 3fdi_A          118 MISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYI  196 (201)
T ss_dssp             EEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHH
T ss_pred             eEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHH
Confidence            688999997 778888887765556666655544322211 10           12367777555558999999998887


Q ss_pred             HH
Q 043263          273 DA  274 (286)
Q Consensus       273 ~~  274 (286)
                      +.
T Consensus       197 ~~  198 (201)
T 3fdi_A          197 DS  198 (201)
T ss_dssp             HT
T ss_pred             HH
Confidence            53

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.74  E-value=2.2e-08  Score=88.97  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+++.+.+ |++++|+|||||||||+++.|++++.
T Consensus       148 ~~l~l~~~~-g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          148 TELQLGFRK-PAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             CSCCCCSSS-SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcceecCC-CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            355666666 99999999999999999999999875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.74  E-value=1.3e-08  Score=89.20  Aligned_cols=125  Identities=14%  Similarity=0.141  Sum_probs=72.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCHHHH-HHHhhccchhhh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSKEEF-LQMVDKNELLEY  160 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~-~~~i~~~~~~~~  160 (286)
                      ++.+|+|+||+|||||||+..|+..++.         ++.....+|++|+.++..|.++++++..++ ...+....|.+ 
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~-  117 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS-  117 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH-
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH-
Confidence            3679999999999999999999988752         223345567888888888888776543221 11111111111 


Q ss_pred             heecccccCccHHHHHHHHhcCCcEEE-EeCHHHHHHHHH---------------------HhCCCcEEEEEecCCHHHH
Q 043263          161 ALVYGDYKGIPKKQIREYMAKGYDIVL-RVDIQGARTLRR---------------------ILGDSAVFVFLAAESEMAL  218 (286)
Q Consensus       161 ~~~~~~~~~~~~~~i~~~~~~g~~~v~-~~~~q~v~iara---------------------l~~~~~~~Illd~~~~~~l  218 (286)
                               ...+.+.+....|...++ ||....+.-+..                     ......++|+|+++ .+.+
T Consensus       118 ---------~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~-re~L  187 (339)
T 3a8t_A          118 ---------LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVS-VKVL  187 (339)
T ss_dssp             ---------HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECC-HHHH
T ss_pred             ---------HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCC-HHHH
Confidence                     112334445555654443 444322221111                     01123456668875 9999


Q ss_pred             HHHHHHhc
Q 043263          219 VERLVERK  226 (286)
Q Consensus       219 ~~rl~~r~  226 (286)
                      .+||.+|.
T Consensus       188 ~~RI~~R~  195 (339)
T 3a8t_A          188 TDYLAKRV  195 (339)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99998873

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.74  E-value=1e-08  Score=81.72  Aligned_cols=69  Identities=12%  Similarity=0.160  Sum_probs=40.0

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhc--CC---C-HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERK--TE---N-REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~--~~---t-~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ....+|||+++ .+.+.+|+.++.  ..   . ...+...+....+..  ...+|.+|-.++.++++++++|.+.++.
T Consensus        92 ~~~~~i~l~~~-~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y--~~~~~~~Idt~~~~~eev~~~I~~~l~~  166 (175)
T 1via_A           92 KAGFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKY--EQKANFILNIENKNIDELLSEIKKVIKE  166 (175)
T ss_dssp             GGCEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHH--HHHCSEEEECTTCCHHHHHHHHHHHHC-
T ss_pred             cCCEEEEEeCC-HHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHH--HhcCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            45688999986 778888886652  11   1 333333222211111  1236766654446899999999887753

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.73  E-value=7.3e-07  Score=73.96  Aligned_cols=69  Identities=20%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             cEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hcc-----------CCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          205 AVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV-QHV-----------KNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       205 ~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~-~~~-----------~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .+.|||+++ .+.+.+|+.++.+.+...+...+.....+. .+.           ..+|.+|-.+.-.++++++.|.+.+
T Consensus       138 ~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i  216 (223)
T 3hdt_A          138 LIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYI  216 (223)
T ss_dssp             EEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHH
T ss_pred             eEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHH
Confidence            588999997 888889988765556655554444322211 111           3578777655558999999998888


Q ss_pred             HH
Q 043263          273 DA  274 (286)
Q Consensus       273 ~~  274 (286)
                      +.
T Consensus       217 ~~  218 (223)
T 3hdt_A          217 RL  218 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.73  E-value=8.9e-09  Score=84.77  Aligned_cols=157  Identities=14%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|.+|+|+|++||||||+++.|++.+.            +..    |..+..++.+.++..+... .+... .. ...+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~------------~~~----g~~~~~~~~d~~r~~l~~~~~~~~~-~r-~~~~~   85 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV------------RDR----RVHAYRLDGDNIRFGLNKDLGFSEA-DR-NENIR   85 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH------------HHH----CCCEEEECHHHHTTTTTTTCCSSHH-HH-HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc------------ccc----CCcEEEECChHHhhhhccccCCCHH-HH-HHHHH
Confidence            489999999999999999999998764            111    2222333333332211100 00000 00 00000


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCH---HHHHHHHHHh---------CCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVDI---QGARTLRRIL---------GDSAVFVFLAAESEMALVERLVERKTENREELLVRI  237 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~---q~v~iaral~---------~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl  237 (286)
                      ...+.+...+..|..++++...   .....++.+.         ..|..+|+||++ .+.+.+|+. +   ...   .+.
T Consensus        86 ~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R~~-r---~~~---~~~  157 (211)
T 1m7g_A           86 RIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRDP-K---GLY---KKA  157 (211)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSCT-T---CHH---HHH
T ss_pred             HHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHhhh-H---HHH---HHH
Confidence            0011233446677777776421   1122333322         245788999987 777777741 1   110   000


Q ss_pred             HHHHH----H----hhccCCCcEEEECCCC-CHHHHHHHHHHHHHH
Q 043263          238 ATARE----E----VQHVKNFDYVVVNAEG-KLDSAVKLVESVIDA  274 (286)
Q Consensus       238 ~~~~~----~----~~~~~~~d~viv~~~G-~i~~~~~~l~~~i~~  274 (286)
                      .....    .    .+....++. +++.++ +++++.++|.+.+..
T Consensus       158 r~~~~~~~~~~~~~y~~~~~~~~-~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          158 REGVIKEFTGISAPYEAPANPEV-HVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             HHTSSSSCBTTTBCCCCCSSCSE-EEECSSSCHHHHHHHHHHHHHH
T ss_pred             HhcchhhhhhhhhhccCCCCCeE-EEECCCCCHHHHHHHHHHHHHH
Confidence            00000    0    001124564 456666 899999999998865

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.71  E-value=1.9e-08  Score=94.29  Aligned_cols=161  Identities=10%  Similarity=0.031  Sum_probs=88.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-hhhhheecccccCc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-LLEYALVYGDYKGI  170 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~  170 (286)
                      +.+|.|+|++||||||+++.|+..+.                 ..|..+.+++.+.++..+.... |.. .....++ ..
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~-----------------~~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~~l-~~  432 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQ-----------------ARGRKVTLLDGDVVRTHLSRGLGFSK-EDRITNI-LR  432 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH-----------------HTTCCEEEECHHHHHHHTCTTCCSSH-HHHHHHH-HH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhh-----------------hcCCeEEEECchHhhhhhcccccccH-HHHHHHH-HH
Confidence            68999999999999999999998653                 2355566667666655432111 110 0000000 00


Q ss_pred             cHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---
Q 043263          171 PKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSA-VFVFLAAESEMALVERLVERKTENREELLVRIATAREE---  243 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~---  243 (286)
                      ....+...+..|..++++..   ......++.++..++ .+|+|+++ .+.+.+|+.+ +... ......+..+...   
T Consensus       433 i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~-~e~~~~Rl~r-~~~~-~~~~~~i~~~~~vr~~  509 (546)
T 2gks_A          433 VGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAP-VEVCEERDVK-GLYK-KAKEGLIKGFTGVDDP  509 (546)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECC-GGGHHHHCCS-SHHH-HC------CCBTTTBC
T ss_pred             HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCC-HHHHHHHhhc-cccc-cccHHHHHHHHhhhhc
Confidence            11233445677888888742   112234555554455 78889986 6777788752 1100 0000111111000   


Q ss_pred             hhccCCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          244 VQHVKNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .+....+|.+|.+++++++++.++|.+.+..
T Consensus       510 ~e~~~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          510 YEPPVAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             CCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             cccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            1111357877655557899999999998875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.70  E-value=2.7e-07  Score=76.99  Aligned_cols=92  Identities=16%  Similarity=0.207  Sum_probs=50.8

Q ss_pred             HhcC-CcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHH-Hh----hccC
Q 043263          179 MAKG-YDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVE----RKTENREELLVRIATARE-EV----QHVK  248 (286)
Q Consensus       179 ~~~g-~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~----r~~~t~~~i~~rl~~~~~-~~----~~~~  248 (286)
                      +... ..++++|--    +...++++.++-|||+++.+....+|..+    ....+.+.+...+..... +.    .+++
T Consensus       124 ~a~~~~~~V~~GRd----~gt~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~  199 (233)
T 3r20_A          124 LATEGGRVVVEGRD----IGTVVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLR  199 (233)
T ss_dssp             HHTSSSCEEEEESS----CCCCCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCS
T ss_pred             HHHhcCcEEEeccc----ceeEEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccc
Confidence            3444 567776631    11124456789999999854444444332    223366666655544322 11    2234


Q ss_pred             CCc-EEEECCCC-CHHHHHHHHHHHHHH
Q 043263          249 NFD-YVVVNAEG-KLDSAVKLVESVIDA  274 (286)
Q Consensus       249 ~~d-~viv~~~G-~i~~~~~~l~~~i~~  274 (286)
                      .+| -++++.++ +++++++.|.++++.
T Consensus       200 ~~~dal~IDTs~l~iee~v~~I~~~i~~  227 (233)
T 3r20_A          200 AADDALVVDTSDMDQAQVIAHLLDLVTA  227 (233)
T ss_dssp             CCTTSEEEECTTSCHHHHHHHHHHHC--
T ss_pred             cccCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            444 24555544 899999999888764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.68  E-value=2.2e-08  Score=84.90  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+++|+||+||||||+++.|++.++
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            5799999999999999999998765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.68  E-value=8.8e-08  Score=87.02  Aligned_cols=126  Identities=14%  Similarity=0.096  Sum_probs=72.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ++.+|.|+|++||||||+++.|+..+..                      ..++.+.+.                 .+..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~----------------------~~i~~D~~~-----------------~~~~  297 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY----------------------VHVNRDTLG-----------------SWQR  297 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTC----------------------EECCGGGSC-----------------SHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCc----------------------EEEccchHH-----------------HHHH
Confidence            4689999999999999999999876431                      111111100                 0111


Q ss_pred             cHHHHHHHHhcCCcEEEEeC----HHH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHH
Q 043263          171 PKKQIREYMAKGYDIVLRVD----IQG---ARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRI  237 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~----~q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl  237 (286)
                      ..+.+...+..|..++++..    .++   ..+++. ...+..+|+++++ .+.+.+|+..|..      .....+..++
T Consensus       298 ~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~-~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~~~~~~~~~~~  375 (416)
T 3zvl_A          298 CVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD-AGVPCRCFNFCAT-IEQARHNNRFREMTDPSHAPVSDMVMFSY  375 (416)
T ss_dssp             HHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH-HTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH-cCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcCCCCHHHHHHH
Confidence            23345566778888888753    122   222332 3345677888875 8899999987743      2223333444


Q ss_pred             HHHHHHhhccCCCcEEEECC
Q 043263          238 ATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       238 ~~~~~~~~~~~~~d~viv~~  257 (286)
                      ....+.......+|.|+..+
T Consensus       376 ~~~~e~P~~~E~fd~v~~v~  395 (416)
T 3zvl_A          376 RKQFEPPTLAEGFLEILEIP  395 (416)
T ss_dssp             HHHCCCCCGGGTCSEEEEEC
T ss_pred             HHhcCCCCcccCCcEEEEEe
Confidence            43332222235678777544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.67  E-value=3.1e-10  Score=90.51  Aligned_cols=101  Identities=19%  Similarity=0.182  Sum_probs=52.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcc---eeeeeecccCCCCCCcCCcceeeeC---HHHHHH-Hh-------hccch
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSL---HFVVTATSRPMRPGEVNGKDYFFVS---KEEFLQ-MV-------DKNEL  157 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~---~~~i~~~~r~~~~G~~~g~~~~~~~---~~~~~~-~i-------~~~~~  157 (286)
                      .++++|+|+||||||||+++|.+++...   .+.+.          ++|.++...+   .+.++. .+       .+..+
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~----------~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~   71 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK----------RHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL   71 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE----------C------------CHHHHHHHHTCEEEEECSSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE----------EcCcccccCCccchhHHHHHhcCCceEEECCCcE
Confidence            3689999999999999999999998622   22222          5565544333   233332 11       11111


Q ss_pred             hhhheecccccCc--cHHHHHHH-HhcCCcEEEE-----eCHHHHHHHHHHhCCCcE
Q 043263          158 LEYALVYGDYKGI--PKKQIREY-MAKGYDIVLR-----VDIQGARTLRRILGDSAV  206 (286)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~i~~~-~~~g~~~v~~-----~~~q~v~iaral~~~~~~  206 (286)
                      ..  ...+. ...  ...++... ++ +++++++     +++||+.+||+++.+|++
T Consensus        72 ~~--i~~~~-~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           72 AF--IRRVS-EEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             EE--EEECC-HHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             EE--EecCC-hhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence            10  00000 000  11122222 44 7777764     788999999999877765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.64  E-value=1.8e-07  Score=81.03  Aligned_cols=145  Identities=16%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc------chhhhheeccc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN------ELLEYALVYGD  166 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~  166 (286)
                      .+|.|+|++||||||+++.|+..+.                   |  +..++.+.++..+...      .+.....  ..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~-------------------~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~--~~   59 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNP-------------------G--FYNINRDDYRQSIMAHEERDEYKYTKKKE--GI   59 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST-------------------T--EEEECHHHHHHHHTTSCCCC---CCHHHH--HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCC-------------------C--cEEecccHHHHHhccCCcccccccchhhh--hH
Confidence            6799999999999999999997531                   1  2223333333322110      0000000  00


Q ss_pred             ccCccHHHHHHHH---hcCCcEEEEeCH---HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHH
Q 043263          167 YKGIPKKQIREYM---AKGYDIVLRVDI---QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERKT--ENREELLV  235 (286)
Q Consensus       167 ~~~~~~~~i~~~~---~~g~~~v~~~~~---q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~  235 (286)
                      ......+.+...+   ..|..+++++..   .....++.+   ...+..+|+|+++ .+.+.+|+.+|..  .+.+.+..
T Consensus        60 ~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~e~i~~  138 (301)
T 1ltq_A           60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRS  138 (301)
T ss_dssp             HHHHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCGGGCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHH
Confidence            0001122344556   667788887622   111122222   2233477889985 8889999988863  35677777


Q ss_pred             HHHHHHHHhhcc------CCCcEEEECCCCCH
Q 043263          236 RIATAREEVQHV------KNFDYVVVNAEGKL  261 (286)
Q Consensus       236 rl~~~~~~~~~~------~~~d~viv~~~G~i  261 (286)
                      ++....+.....      .....++++.+|.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl  170 (301)
T 1ltq_A          139 MYKSMREYLGLPVYNGTPGKPKAVIFDVDGTL  170 (301)
T ss_dssp             HHHHHHHHHTCCCCCCCTTSCEEEEEETBTTT
T ss_pred             HHHHHhcccCCcceeccccccceEEEeCCCCc
Confidence            776654432211      11245556666654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.60  E-value=5.4e-08  Score=85.12  Aligned_cols=26  Identities=38%  Similarity=0.542  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.++||+|||||||||++++|.+++.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56999999999999999999999875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.59  E-value=6e-09  Score=92.12  Aligned_cols=50  Identities=22%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .++++++++.|+.  .+.++++.+.+ |.+++|+|+|||||||++++|.+++.
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~-g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGR-AIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCC-SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHeeCCcccccChHHHHHhCCcccCC-CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            4788889999864  67888888887 99999999999999999999998864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.59  E-value=1.7e-07  Score=87.84  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|++++|+|+||||||||+++|++.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhc
Confidence            499999999999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.55  E-value=5.1e-09  Score=89.24  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .|.+++  +.+ |++++|+|||||||||++++|+++++
T Consensus        16 vl~~i~--i~~-g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           16 KVLELC--HRK-MGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             HHHHGG--GCS-SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHh--hCC-CCEEEEECCCCccHHHHHHHHHHhCC
Confidence            344444  344 99999999999999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.54  E-value=7.4e-09  Score=94.55  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             hHHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           66 KIELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        66 ~~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..++++++++.|+ +  +++++ +.+.+ |++++|+||||||||||+++|+++..
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~-Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGR-GQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBT-TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CceEEeccceecCCCceEEeee-EEecC-CCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3578889999997 3  68888 88887 99999999999999999999999986

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.52  E-value=3.5e-08  Score=90.75  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.++++.+++  ++++|+||||||||||+++|+|++.
T Consensus        19 ~l~~vsl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           19 GFFARTFDFDE--LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             TEEEEEEECCS--SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cccceEEEEcc--ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            57777777775  9999999999999999999999986

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.51  E-value=3.3e-09  Score=93.23  Aligned_cols=66  Identities=12%  Similarity=0.011  Sum_probs=41.6

Q ss_pred             EEeCHHHHHHHHHHh----CCCcEEEE------EecCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccCCCcEE--
Q 043263          187 LRVDIQGARTLRRIL----GDSAVFVF------LAAESEMALVERLVERK-TENREELLVRIATAREEVQHVKNFDYV--  253 (286)
Q Consensus       187 ~~~~~q~v~iaral~----~~~~~~Il------ld~~~~~~l~~rl~~r~-~~t~~~i~~rl~~~~~~~~~~~~~d~v--  253 (286)
                      ++|++|++.+|+++.    ..|+++|+      ||+.....+.+.+.+.. +.+...++|+...       ...||++  
T Consensus       221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-------~~~~d~~~~  293 (322)
T 1e69_A          221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-------MEAADLLHG  293 (322)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-------GGGCSEEEE
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-------HhhCceEEE
Confidence            456789999999985    45666666      55554556655555532 2345566787543       4568865  


Q ss_pred             EECCCC
Q 043263          254 VVNAEG  259 (286)
Q Consensus       254 iv~~~G  259 (286)
                      +++.+|
T Consensus       294 v~~~~g  299 (322)
T 1e69_A          294 VTMVNG  299 (322)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence            556666

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.50  E-value=8.4e-09  Score=91.43  Aligned_cols=49  Identities=22%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             HHHhHhHHHHhc-c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           67 IELLRSLEASLG-H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        67 ~i~~~~v~~~~~-~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .++++++++.|+ +  +++++ +.+.+ |++++|+||||||||||+++|+++..
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~-Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGI-GQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEET-TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CeeecccceecCCCCEEEEee-eeecC-CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            466777788776 3  56677 77776 99999999999999999999999976

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.48  E-value=5.8e-07  Score=85.07  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|.+|.|+|.+||||||+++.|+..+.                 -.|..+..++.+.++..+..+ .|... ....+...
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~-----------------~~G~~~v~lDgD~iR~~L~~~~~fs~~-dree~~r~  112 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV-----------------CHGIPCYTLDGDNIRQGLNKNLGFSPE-DREENVRR  112 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH-----------------HTTCCEEEESHHHHTTTTTTTCCSSHH-HHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH-----------------hcCCeEEEechHHhhhccCccccCChh-hhHHHHHH
Confidence            478999999999999999999998752                 012222223333222211100 00000 00000000


Q ss_pred             ccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHh----cCCCHHHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRVD---IQGARTLRRIL---GDSAVFVFLAAESEMALVERLVER----KTENREELLVRIAT  239 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~---~~~~~~Illd~~~~~~l~~rl~~r----~~~t~~~i~~rl~~  239 (286)
                      + .+.+...+..|..++.+.-   ......++.++   ..+.++|+||++ .+.+.+|+.+.    ........   +..
T Consensus       113 i-~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~r~ly~~aR~~~~~~---~~~  187 (630)
T 1x6v_B          113 I-AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLYKKARAGEIKG---FTG  187 (630)
T ss_dssp             H-HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCTTSHHHHHTTC-------CBT
T ss_pred             H-HHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhccccchhhhhhhHHH---HHH
Confidence            1 1122333556666665521   11123344443   235678999997 77888886521    11111000   000


Q ss_pred             HHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          240 AREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       240 ~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .....+....+|.+|-.++.++++++++|.+.+...
T Consensus       188 ~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~  223 (630)
T 1x6v_B          188 IDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER  223 (630)
T ss_dssp             TTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred             hhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence            000001113567655444458999999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.45  E-value=3.2e-08  Score=80.83  Aligned_cols=47  Identities=11%  Similarity=0.182  Sum_probs=32.2

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .++++|++|.|+. .+.+  +.+.+ |..++|+|++|||||||++.|++..
T Consensus         3 ~l~~~~~~~~~~~~~l~~--~~~~~-~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A            3 NLNYQQTHFVMSAPDIRH--LPSDT-GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             --------CEEEESSGGG--SSCSC-SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             chhhhhhhheeecCCHhH--CCCCC-CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3688999999975 4555  56665 9999999999999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.44  E-value=5.9e-07  Score=75.95  Aligned_cols=27  Identities=30%  Similarity=0.580  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.++.|+|++||||||+++.|++.++
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            378999999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.43  E-value=1.8e-07  Score=85.84  Aligned_cols=37  Identities=32%  Similarity=0.459  Sum_probs=32.4

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ...++++.+.+ |.+++|+|+|||||||++++|++++.
T Consensus       282 ~~~~Isl~i~~-GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          282 VDEPLNVEGKA-PFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             TBCCCCCCSCT-TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCceeeccC-CeEEEEECCCcccHHHHHHHHHHHhh
Confidence            34567777776 99999999999999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.40  E-value=7.1e-08  Score=83.56  Aligned_cols=55  Identities=16%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSKE  146 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~~  146 (286)
                      +.+++|+||+|||||||+..|+..++.         ++..+..+|++|+.++..|.++++++..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~   66 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIK   66 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCB
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccC
Confidence            678999999999999999999987652         2334556778888888888888876543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.38  E-value=4.5e-07  Score=79.65  Aligned_cols=27  Identities=37%  Similarity=0.554  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|++++|+|||||||||++++|++++.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            499999999999999999999999876

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.36  E-value=1.7e-07  Score=83.92  Aligned_cols=54  Identities=20%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      ..+|+|+||+|||||||+..|+..++.         ++-.+..+|++|..++..|.++++++.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~   64 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNH   64 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSC
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCc
Confidence            468999999999999999999977653         222345678889888888998887653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.33  E-value=4.4e-08  Score=88.66  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=26.6

Q ss_pred             CCCCCCCCCCeE--EEEEcCCCCCHHHHHHHHHhcc
Q 043263           83 SNPVCPPPNPLI--IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        83 ~~~~~~~~~g~i--i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++++.+. +|.+  ++|+|+||||||||+++|+|+.
T Consensus        32 ~vsl~i~-~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           32 LVNKSVS-QGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHSCC--CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCceEec-CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3334444 4999  9999999999999999999973

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.33  E-value=3.1e-08  Score=92.74  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=26.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           87 CPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+++ |++++|+|+||||||||++.+++...
T Consensus       277 ~i~~-G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          277 GFFK-DSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             SEES-SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCC-CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4555 99999999999999999999998764

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.32  E-value=3.7e-07  Score=76.58  Aligned_cols=68  Identities=10%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHh-hccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTENREELL----VRIATAREEV-QHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~----~rl~~~~~~~-~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ..+.+|++|++.+ ..++|+++|+. +.+.+.    .++..+..+. .+...||.||.|+ |+++++..++.++++
T Consensus       167 ~~d~VvVvdv~~~-~qieRl~~rg~-~~v~i~~~~~~~i~~Q~se~~~k~~~AD~VI~N~-gsle~l~~qV~~ll~  239 (241)
T 1dek_A          167 GYDYYIVPDTRQD-HEMDAARAMGA-TVIHVVRPGQKSNDTHITEAGLPIRDGDLVITND-GSLEELFSKIKNTLK  239 (241)
T ss_dssp             SCSEEEECCCCSH-HHHHHHHHTTC-EEEEEECTTCCCSCCSGGGSCCCCCTTCEEEECC-SCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCcH-HHHHHHHHCCC-ceEEEECcccchhhcCCCcccccccCCCEEEECC-CCHHHHHHHHHHHHh
Confidence            3467788888754 55588888853 111111    2344455554 3567899999776 899999999988875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.30  E-value=4e-07  Score=81.13  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263           82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHF  121 (286)
Q Consensus        82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~  121 (286)
                      .++++.+.+ |++++|+|||||||||++++|+++++...+
T Consensus       166 ~~l~~~i~~-G~~i~ivG~sGsGKSTll~~l~~~~~~~~g  204 (361)
T 2gza_A          166 SFLRRAVQL-ERVIVVAGETGSGKTTLMKALMQEIPFDQR  204 (361)
T ss_dssp             HHHHHHHHT-TCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred             HHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence            555666665 999999999999999999999999874333

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.27  E-value=3.4e-07  Score=78.27  Aligned_cols=25  Identities=36%  Similarity=0.604  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..++|+||||||||||+++|+|+..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3689999999999999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.26  E-value=1.5e-07  Score=81.36  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCc---------ceeeeeecccCCCCCCcCCcceeeeCH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDS---------LHFVVTATSRPMRPGEVNGKDYFFVSK  145 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~i~~~~r~~~~G~~~g~~~~~~~~  145 (286)
                      +.+++|+||+|||||||+..|+..++.         ++..+..+|++|+.++.+|.++++++.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~   72 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDI   72 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEecc
Confidence            578999999999999999999987653         223345567777777777777766543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.25  E-value=2.6e-05  Score=66.07  Aligned_cols=73  Identities=10%  Similarity=0.114  Sum_probs=46.2

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhh----------ccCCCcEEEECCCCCHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTE----NREELLVRIATAREEVQ----------HVKNFDYVVVNAEGKLDSAVKLV  268 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~----t~~~i~~rl~~~~~~~~----------~~~~~d~viv~~~G~i~~~~~~l  268 (286)
                      .|+++|+||.+ .+.+.+|+.+|++.    .......++........          ....+..++++.+++++++.++|
T Consensus       174 ~pd~vi~L~~~-~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I  252 (263)
T 1p5z_B          174 ELDGIIYLQAT-PETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL  252 (263)
T ss_dssp             CCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred             CCCeEEEEECC-HHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHH
Confidence            68899999997 78888998877531    11223333333222210          01113466677778999999999


Q ss_pred             HHHHHHHH
Q 043263          269 ESVIDAEK  276 (286)
Q Consensus       269 ~~~i~~~~  276 (286)
                      .+.+....
T Consensus       253 ~~~l~~~l  260 (263)
T 1p5z_B          253 VEKVKEFL  260 (263)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.24  E-value=4.9e-07  Score=72.36  Aligned_cols=25  Identities=44%  Similarity=0.740  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.++|+|||||||||++++|++++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999999874

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.23  E-value=2e-06  Score=81.04  Aligned_cols=159  Identities=13%  Similarity=0.074  Sum_probs=79.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCC-cceeeeCHHHHHHHhhcc-chhhhheeccccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNG-KDYFFVSKEEFLQMVDKN-ELLEYALVYGDYK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~  168 (286)
                      +|.+|.|+|.+||||||+++.|+..+..                 .| ..+..++.+.++..+..+ .|... ....++.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~-----------------~G~~~~~~lD~D~ir~~l~~~~~f~~~-er~~~i~  456 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQ-----------------QGGRSVSLLLGDTVRHELSSELGFTRE-DRHTNIQ  456 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH-----------------HCSSCEEEEEHHHHHHHTCTTCCCSHH-HHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcc-----------------cCCceEEEECcHHHHHHhccccCCChh-HHHHHHH
Confidence            4789999999999999999999987531                 12 333344444433321110 01000 0000000


Q ss_pred             CccHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHhcCCCHHH-H-HHHHHHHH
Q 043263          169 GIPKKQIREYMAKGYDIVLRVD---IQGARTLRRILGD--SAVFVFLAAESEMALVERLVERKTENREE-L-LVRIATAR  241 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~--~~~~Illd~~~~~~l~~rl~~r~~~t~~~-i-~~rl~~~~  241 (286)
                       ...+.+...+..|..++++.-   ......++.++..  +.++||||++ .+.+.+|..+    .... . ...+....
T Consensus       457 -ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~-~ev~~~R~~r----~l~~~~~~~~i~~~~  530 (573)
T 1m8p_A          457 -RIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATP-LEHCEQSDKR----GIYAAARRGEIKGFT  530 (573)
T ss_dssp             -HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCC-HHHHHHHCSS----CHHHHHHTTSSSSCB
T ss_pred             -HHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCC-HHHHHHHhcc----cchhhhhHHHHHHHH
Confidence             001123344566766666531   1122344555432  3478899987 7777777421    1100 0 00000000


Q ss_pred             HHh-hc--cCCCcEEEECCCC-CHHHHHHHHHHHHHH
Q 043263          242 EEV-QH--VKNFDYVVVNAEG-KLDSAVKLVESVIDA  274 (286)
Q Consensus       242 ~~~-~~--~~~~d~viv~~~G-~i~~~~~~l~~~i~~  274 (286)
                      ... .+  ...+|.+| +.++ ++++++++|.+.+..
T Consensus       531 ~~r~~~~~p~~~dl~I-Dts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          531 GVDDPYETPEKADLVV-DFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             TTTBCCCCCSSCSEEE-CTTTSCHHHHHHHHHHHHHH
T ss_pred             hccccccccCCCCEEE-ECCCCCHHHHHHHHHHHHHh
Confidence            000 01  12456444 5444 899999999998865

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.21  E-value=7.3e-07  Score=74.70  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=44.3

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCC--C--HHHHHHHHHHHHHHhhc----------cCCCcEEEECCCCCHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTE--N--REELLVRIATAREEVQH----------VKNFDYVVVNAEGKLDSAVKLV  268 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~--t--~~~i~~rl~~~~~~~~~----------~~~~d~viv~~~G~i~~~~~~l  268 (286)
                      .|+++||||++ .+.+.+|+.+|+..  .  ......++.........          ...+..++++.++++++..+++
T Consensus       149 ~pd~~i~l~~~-~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i  227 (241)
T 2ocp_A          149 TLHGFIYLQAS-PQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQ  227 (241)
T ss_dssp             CCCEEEEEECC-HHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHH
T ss_pred             CCCEEEEEECC-HHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHH
Confidence            68999999997 77888999887542  1  12333444444333210          1345667777777776666666


Q ss_pred             HHHHHHHH
Q 043263          269 ESVIDAEK  276 (286)
Q Consensus       269 ~~~i~~~~  276 (286)
                      ..+++...
T Consensus       228 ~~i~~~i~  235 (241)
T 2ocp_A          228 EDLMREVN  235 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.19  E-value=2.3e-07  Score=82.44  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+++|+|||||||||++++|++++.
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            77999999999999999999999875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.19  E-value=2.3e-07  Score=84.16  Aligned_cols=49  Identities=27%  Similarity=0.307  Sum_probs=38.0

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      .+.++++++.|+.  .|.++ + .. +|.+++|+|||||||||++++|++++..
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~-~~-~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-I-KR-PHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-H-TS-SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             CCCHHHcCCCHHHHHHHHHH-H-Hh-cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4577788777754  45555 2 23 4899999999999999999999998763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.19  E-value=1.2e-07  Score=88.68  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             cccCCCC-CCCCCCeEEEEEcCCCCCHHHHHHH--HHhccC
Q 043263           80 AFDSNPV-CPPPNPLIIVISGPSGVGKDTVIKK--LRESRD  117 (286)
Q Consensus        80 ~l~~~~~-~~~~~g~ii~l~G~sGsGKSTl~~~--L~~~~~  117 (286)
                      .|+++++ .+++ |++++|+||||||||||+++  ++++..
T Consensus        27 ~Ld~i~~G~i~~-Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           27 GFDDISHGGLPI-GRSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             THHHHTTSSEET-TSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCC-CeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            4555555 5555 99999999999999999999  678764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.19  E-value=1.1e-06  Score=74.21  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=42.1

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+.+++++.+.|+.  .+.++++.+++ |  ++|+|||||||||++++|++...
T Consensus        23 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~-g--~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           23 EAKEELKEIVEFLKNPSRFHEMGARIPK-G--VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTTCCCCS-E--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCHHHHHHcCCCCCC-e--EEEECCCCCCHHHHHHHHHHHhC
Confidence            345788888888865  67888888876 7  99999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.16  E-value=7.7e-07  Score=71.92  Aligned_cols=26  Identities=38%  Similarity=0.634  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      |++++|+|||||||||++++|++++.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc
Confidence            57899999999999999999999874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.12  E-value=1.3e-06  Score=72.11  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|++++|+|||||||||++++|++.+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999999864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.12  E-value=1.7e-06  Score=74.02  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=42.2

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+.+++++.+.|+.  .+.++++.+++ |  ++|+|||||||||++++|++...
T Consensus        47 ~~~~~l~~l~~~~~~~~~l~~~~~~~~~-g--vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           47 EAKEELKEIVEFLKNPSRFHEMGARIPK-G--VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTTCCCCC-E--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCHHHHHHcCCCCCC-e--EEEECCCcChHHHHHHHHHHHcC
Confidence            345678899988865  67888888876 7  99999999999999999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.12  E-value=6.4e-06  Score=72.28  Aligned_cols=25  Identities=28%  Similarity=0.543  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+|+|+||+||||||+++.|+..++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.11  E-value=1.3e-06  Score=75.74  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .|++++|+||||||||||+++|+++..
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccccc
Confidence            389999999999999999999999876

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.05  E-value=1.3e-06  Score=76.24  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      .+|+|+||+||||||+++.|+..++.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~   31 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPC   31 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            58999999999999999999988753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.02  E-value=3.5e-06  Score=73.14  Aligned_cols=26  Identities=35%  Similarity=0.838  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .|++++|+||||||||||+++|. ...
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            38999999999999999999999 775

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.01  E-value=2.9e-06  Score=67.63  Aligned_cols=33  Identities=15%  Similarity=0.108  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           83 SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        83 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+.+.+ | +.+|+|+|||||||++++|..++.
T Consensus        19 ~~~~~~~~-g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           19 KVVIPFSK-G-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             CEEEECCS-S-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEecCC-C-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            33444444 6 899999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.01  E-value=4e-06  Score=77.96  Aligned_cols=30  Identities=13%  Similarity=0.186  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcce
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLH  120 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~  120 (286)
                      +|.+++|+||+||||||++++|+++++...
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~  288 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPDA  288 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence            488999999999999999999999987433

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.01  E-value=8.3e-07  Score=84.38  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++|+|+||||||||+++|+|++.
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-
T ss_pred             EEEECCCCChHHHHHHHHhCCCC
Confidence            99999999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.00  E-value=4e-07  Score=75.68  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+++|+|||||||||++++|++++.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccc
Confidence            6789999999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.00  E-value=2.1e-06  Score=76.58  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             CCCCCCCCC--CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           83 SNPVCPPPN--PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        83 ~~~~~~~~~--g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+++.+. +  ++.++|+|+||||||||+++|+|++.
T Consensus       160 ~v~~~v~-~~lg~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          160 FIPKEAR-PFFAKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             GSCTTTG-GGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCCHHHH-HhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3444443 4  78999999999999999999999986

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.00  E-value=1.2e-06  Score=75.66  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|++++|+|+|||||||+++.|++...
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            499999999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.99  E-value=3.5e-06  Score=73.64  Aligned_cols=46  Identities=20%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcce
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDY  140 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~  140 (286)
                      +.++++|+|+|||||||+++.|.+........+.    .+..|+  ++|.++
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi----~~d~G~i~idg~~l   50 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVI----ENEFGEVSVDDQLI   50 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEE----CSSCCSCCEEEEEE
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEE----EecCcccCccHHHH
Confidence            3678999999999999999999998632222222    155666  455443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.99  E-value=4.8e-06  Score=73.72  Aligned_cols=27  Identities=30%  Similarity=0.521  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|++++|+|+||||||||+++|++...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            389999999999999999999999875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.98  E-value=8.1e-06  Score=70.57  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=39.6

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.++++++.|+....++++.  + |++++++|++|+||||++..|++.+.
T Consensus        76 ~~~~~~l~~~~~~~~~~i~~~--~-~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           76 ATVYEALKEALGGEARLPVLK--D-RNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             HHHHHHHHHHTTSSCCCCCCC--S-SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCceeecC--C-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367889999997533555665  4 89999999999999999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.96  E-value=1.4e-06  Score=78.91  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=32.2

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+.++||++.|+.  ++.++++       .|+|+|+||||||||+++|++...
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf-------~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEF-------TLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCE-------EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             CcEEEEecceeECCEEEecCCCE-------EEEEECCCCCcHHHHHHHHhCCCC
Confidence            45888999999975  4555553       359999999999999999998753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.93  E-value=3.7e-06  Score=66.98  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      |..++|+||+||||||+++++++.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999999876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.90  E-value=5e-06  Score=71.12  Aligned_cols=35  Identities=23%  Similarity=0.539  Sum_probs=31.0

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.++++.++. |  ++|+|||||||||++++|++.+.
T Consensus        35 ~l~~~~l~~~~-G--vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           35 QFKALGLVTPA-G--VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             HHHHTTCCCCS-E--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCC-e--EEEECCCCCcHHHHHHHHHHHcC
Confidence            57777887776 7  99999999999999999999875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.87  E-value=7.2e-06  Score=73.24  Aligned_cols=29  Identities=28%  Similarity=0.490  Sum_probs=26.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+ |.+++|+|||||||||++++|++++.
T Consensus       133 ~~~-g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRK-MGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSS-SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcC-CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            444 99999999999999999999999876

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.86  E-value=2.2e-06  Score=74.44  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=24.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           87 CPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.+ |++++|+|+||||||||+++|.+...
T Consensus       169 ~~~~-G~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          169 PHFQ-DKTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             GGGT-TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             hhcC-CCEEEEECCCCCCHHHHHHHhccccc
Confidence            3444 99999999999999999999998865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.86  E-value=8.4e-06  Score=70.30  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+|+|+|++||||||++++|.+++.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            489999999999999999999999875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.85  E-value=3.3e-06  Score=84.46  Aligned_cols=49  Identities=14%  Similarity=0.261  Sum_probs=36.2

Q ss_pred             HHHhHh-----HHHHh-cc--cccCCCCCCCC------CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           67 IELLRS-----LEASL-GH--AFDSNPVCPPP------NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        67 ~i~~~~-----v~~~~-~~--~l~~~~~~~~~------~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .+.+++     |++.| +.  ++.++++.+.+      +|++++|+|||||||||+++.+ |++
T Consensus       750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            478888     88888 43  67888877754      2799999999999999999999 875

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.83  E-value=0.00024  Score=57.55  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             cEEEEeCH--HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          184 DIVLRVDI--QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       184 ~~v~~~~~--q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      .+++++-+  --+...+..++....+|-+.++ ++...+|....... ..  .|..+.-   ......+|.+|+|+ |++
T Consensus       105 ~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as-~~~R~~Rg~~~~~~-~D--d~esE~g---L~~~~~~D~vI~Nd-gt~  176 (202)
T 3ch4_B          105 IWLVSDTRRVSDIQWFREAYGAVTQTVRVVAL-EQSRQQRGWVFTPG-VD--DAESECG---LDNFGDFDWVIENH-GVE  176 (202)
T ss_dssp             EEEECCCCSHHHHHHHHHHHGGGEEEEEEEEC-HHHHHHTTCCCCTT-TT--TSHHHHT---TTTCCCCSEEEEEC-SCH
T ss_pred             cEEEeCCCCHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHhhhcccc-cc--ccccccC---CCCCCcCCEEEEeC-CCH
Confidence            35555532  3355566666422344557775 77777774322111 11  1211111   11124799999877 799


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 043263          262 DSAVKLVESVIDAEKAK  278 (286)
Q Consensus       262 ~~~~~~l~~~i~~~~~~  278 (286)
                      +++.+++.+++...+..
T Consensus       177 eel~~~v~~ll~~~~~~  193 (202)
T 3ch4_B          177 QRLEEQLENLIEFIRSR  193 (202)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998877643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.82  E-value=1.3e-05  Score=71.61  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=30.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.++++.+++ |++++|+||+||||||++++|++.+.
T Consensus       158 ~l~~~~~~i~~-~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          158 FLKCMVYNIPK-KRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             HHHHHHHCCTT-CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHHhcccccCC-CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45555666666 99999999999999999999998753

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.81  E-value=7.1e-06  Score=63.56  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      |+.++|+||+|||||||++++++.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.80  E-value=6.9e-06  Score=67.70  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|++++|+|||||||||+++.|++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999999765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.80  E-value=5.1e-06  Score=72.08  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             HhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           71 RSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        71 ~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .||++.|+.  ++.+++       ..|+|+|+||||||||++.|.+.
T Consensus         2 ~~l~~~~~~~~~l~~~~-------~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFE-------FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             ----------------C-------EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CCCcceECCEEEEcCCC-------EEEEEECCCCCCHHHHHHHHhCC
Confidence            467777764  455554       34699999999999999999875

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.79  E-value=0.00038  Score=64.80  Aligned_cols=25  Identities=36%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+|.++|.+||||||+++.|+..+
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999998765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.76  E-value=1.3e-05  Score=63.74  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+++|+|++||||||+++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            46899999999999999999988754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.75  E-value=1e-05  Score=79.05  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++.++++. . +|++++|+|||||||||+++++++.
T Consensus       597 vlndisl~-~-~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          597 IANPLNLS-P-QRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CCEEEEEC-S-SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeccccc-C-CCcEEEEECCCCCChHHHHHHHHHH
Confidence            45566666 4 4999999999999999999999986

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.73  E-value=1.6e-05  Score=62.78  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+++|+|++||||||++..|...+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            56899999999999999999987754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.73  E-value=7.9e-06  Score=80.69  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           80 AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        80 ~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++.++++.+.+ |++++|+|||||||||+++++++.
T Consensus       662 V~ndvsl~~~~-g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          662 VPNNTDLSEDS-ERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             CCEEEEECTTS-CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ecccccccCCC-CeEEEEECCCCCchHHHHHHHHHH
Confidence            46677777776 999999999999999999998754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.66  E-value=1.2e-05  Score=70.98  Aligned_cols=49  Identities=16%  Similarity=0.070  Sum_probs=36.3

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+++.+.|+.  .+.++++.... +.+++|+|++|+||||+++.|++.+.
T Consensus        31 ie~~~~~~~~~~~~~~~~l~~~~~~-~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           31 VESRHPRHQALSTQLLDAIMPYCGN-TLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHCCCHHHHHHHHHHHHHHGGGCSC-SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhcCCchhhhHHHHHHHhCCcccCC-CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            455556655553  34455555554 99999999999999999999998753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.64  E-value=1.8e-06  Score=76.05  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..++|+||||+||||++++|++.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            6799999999999999999999863

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.64  E-value=8.4e-06  Score=72.44  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=41.1

Q ss_pred             hHHHhHhHHHHhcc---ccc--------------CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           66 KIELLRSLEASLGH---AFD--------------SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        66 ~~i~~~~v~~~~~~---~l~--------------~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.++||++.|+.   .+.              +..+.+.+ |+.++|+||+|+|||||+++|++..
T Consensus       132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~r-GQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR-GQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBT-TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecC-CcEEEEecCCCCChhHHHHHHHHHH
Confidence            45789999999975   455              45556665 9999999999999999999998864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.64  E-value=3e-05  Score=63.32  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|++++|+|+|||||||+++.|++
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999999987

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.63  E-value=1.8e-05  Score=76.84  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      |++++|+|||||||||++++++++.
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            8999999999999999999999874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.63  E-value=4.1e-05  Score=66.89  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .++++...+ |++++|+|++||||||++..|++.+.
T Consensus        96 ~~l~~~~~~-~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A           96 YRIDFKENR-LNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             CCCCCCTTS-CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             cCccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567776665 99999999999999999999998874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.62  E-value=2.5e-05  Score=64.92  Aligned_cols=25  Identities=20%  Similarity=0.213  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|++++|+|||||||||+++.|++.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4999999999999999999999984

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.62  E-value=2.2e-05  Score=69.68  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=44.0

Q ss_pred             EeCHHHHHHHHHHh---------CCCcEEEE------EecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcE
Q 043263          188 RVDIQGARTLRRIL---------GDSAVFVF------LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDY  252 (286)
Q Consensus       188 ~~~~q~v~iaral~---------~~~~~~Il------ld~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~  252 (286)
                      +|+.|++.+|++++         ..|+++++      ||+.....+.+.+.+.. .+...++| . .       . .||+
T Consensus       268 ~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th-~-~-------~-~~~~  336 (359)
T 2o5v_A          268 RGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTE-L-A-------P-GAAL  336 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESS-C-C-------T-TCSE
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEe-c-c-------c-cCCE
Confidence            46779999999998         78888888      77766666666666543 23333444 1 1       1 7899


Q ss_pred             EEECCCCCH
Q 043263          253 VVVNAEGKL  261 (286)
Q Consensus       253 viv~~~G~i  261 (286)
                      ++++++|++
T Consensus       337 i~~l~~G~i  345 (359)
T 2o5v_A          337 TLRAQAGRF  345 (359)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEECCEE
Confidence            998888865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.61  E-value=8.1e-05  Score=64.55  Aligned_cols=27  Identities=33%  Similarity=0.509  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|++++|+|++||||||++..|++.+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            389999999999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.60  E-value=9.5e-05  Score=68.40  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             hhHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           65 NKIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+.+++++...|..  .+.++.+.+++ |  +.|+||+|+|||||+++|++...
T Consensus        38 ~~k~~l~~lv~~l~~~~~~~~lg~~ip~-G--vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           38 EAKEELKEIVEFLKNPSRFHEMGARIPK-G--VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTTSCCCCS-E--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhchhhhhhccCCCCc-e--EEEECCCCCCHHHHHHHHHHHhC
Confidence            345678888777754  67788887776 7  99999999999999999998764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.60  E-value=2e-05  Score=78.02  Aligned_cols=31  Identities=23%  Similarity=0.278  Sum_probs=26.5

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKL  112 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L  112 (286)
                      +.++++.+.+ |++++|+|||||||||+++++
T Consensus       652 ~ndisl~~~~-g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          652 PNDVYFEKDK-QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CEEEEEETTT-BCEEEEECCTTSSHHHHHHHH
T ss_pred             cccceeecCC-CeEEEEECCCCCCHHHHHHHH
Confidence            4455666665 999999999999999999999

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.56  E-value=1.8e-05  Score=68.22  Aligned_cols=27  Identities=30%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+|+|+||+||||||+++.|+..++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999988654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.54  E-value=4.4e-05  Score=68.46  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|..++|+|+||||||||+++|.+.
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999999984

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.52  E-value=5.8e-05  Score=65.22  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+++|+|++||||||++..|++.+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999998874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.51  E-value=4e-05  Score=67.82  Aligned_cols=30  Identities=20%  Similarity=0.120  Sum_probs=27.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           86 VCPPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        86 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .-+++ |++++|+||||||||||++.|++..
T Consensus       126 ggi~~-G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          126 GGIET-QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEES-SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCC-CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45665 9999999999999999999999876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.50  E-value=0.00013  Score=66.11  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=38.7

Q ss_pred             HHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           67 IELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+..+++++.|+..-.++++.  + +.+++++|++||||||++..|++.+.
T Consensus        76 ~~v~~~L~~~~~~~~~~i~l~--~-~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           76 ATVYEALKEALGGEARLPVLK--D-RNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             HHHHHHHHHHTTSSCCCCCCC--S-SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccCC--C-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356778889998533455555  4 89999999999999999999998875

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.49  E-value=5.1e-05  Score=71.11  Aligned_cols=49  Identities=22%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCc
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      +-++++.+.|..  .+..+++.+ + |.+++|+||||+||||++++|++.+..
T Consensus        84 ~G~~~vk~~i~~~~~l~~~~~~~-~-g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A           84 HGLEKVKERILEYLAVQKLTKSL-K-GPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSC-C-SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHHHHhcccC-C-CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            445677777754  345555555 3 899999999999999999999998753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.47  E-value=0.00012  Score=63.13  Aligned_cols=49  Identities=22%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             HHHhHhHHHHhcccccC-CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           67 IELLRSLEASLGHAFDS-NPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        67 ~i~~~~v~~~~~~~l~~-~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+..+++...|+....+ +++.. + +.+++++|++|+||||++..|++.+.
T Consensus        74 ~~~~~~l~~~~~~~~~~~i~~~~-~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           74 KIVYDELSNLFGGDKEPKVIPDK-I-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             HHHHHHHHHHTTCSCCCCCSCSS-S-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccccCC-C-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46778888889864344 55543 3 89999999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.46  E-value=6.6e-05  Score=68.48  Aligned_cols=51  Identities=25%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ...++|+|+||+|||||++.|.+.........+.+|+.+..|.  ++|.++..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l  232 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF  232 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEE
Confidence            4579999999999999999999874323333444555565555  45655443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.45  E-value=6.6e-05  Score=64.10  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +++ |++++|+||||||||||++.|++..
T Consensus        27 l~~-G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           27 MVA-GTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EET-TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccC-CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            444 9999999999999999999999754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.45  E-value=6.6e-05  Score=60.19  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..++|+|++|||||||++.|++..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            579999999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.44  E-value=9.2e-05  Score=57.18  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..+.+|+|||||||||++.+|.-.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999743

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.41  E-value=7e-05  Score=58.97  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++..|+|+|++|+|||||++.|.+.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3788999999999999999999875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.40  E-value=9e-05  Score=59.65  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..++|+|++|||||||++.|++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            469999999999999999999863

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.33  E-value=0.00012  Score=66.56  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      |.+++|+|||||||||++++|.+++.
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            78999999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.28  E-value=0.0015  Score=60.06  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+|.++|.+||||||+++.|+..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.27  E-value=0.00016  Score=63.88  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+|+|+|++|||||||++.|.+.+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999999865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.22  E-value=4.9e-05  Score=68.75  Aligned_cols=34  Identities=9%  Similarity=0.062  Sum_probs=28.1

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           82 DSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        82 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .++++.+.. +..++|+|+||||||||+++|++..
T Consensus       148 ~~i~lelk~-g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          148 RRLRLELML-IADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEECC-SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             eeeeeEEcC-CCEEEEECCCCCcHHHHHHHHHcCC
Confidence            344555555 8899999999999999999999874

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.16  E-value=0.00017  Score=63.95  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             HHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           68 ELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        68 i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..++++...|+.     .|.++++.+|    .|+|+|++|||||||++.|.|.
T Consensus         9 ~~l~~~~~~~~~~~~~~~l~~i~~~lp----~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A            9 NKIQRACTALGDHGDSSALPTLWDSLP----AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             HHTTTTTTSCSSCCSSCCC----CCCC----EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHhhCccccccccccccccCC----EEEEECCCCCcHHHHHHHHhCC
Confidence            355666666653     3555555555    5999999999999999999983

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.16  E-value=0.00022  Score=55.48  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..++|+|++|+|||||++.|.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56999999999999999999875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.10  E-value=0.00031  Score=61.86  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=36.9

Q ss_pred             HHHHHhCCCc--EEEEEecCCHHHHHHHHHHhc---CC--CHHHHHHHHHHHH----HH-hhccCCCcEEEEC
Q 043263          196 TLRRILGDSA--VFVFLAAESEMALVERLVERK---TE--NREELLVRIATAR----EE-VQHVKNFDYVVVN  256 (286)
Q Consensus       196 iaral~~~~~--~~Illd~~~~~~l~~rl~~r~---~~--t~~~i~~rl~~~~----~~-~~~~~~~d~viv~  256 (286)
                      -++.++....  ..||+|++ ++.+.+|+.+|.   +.  +.+.+..++....    .. ......||.|+.-
T Consensus       279 ~l~~l~D~~~~~~~i~Vdad-~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~~~I~~~~~~ad~i~~~  350 (359)
T 2ga8_A          279 KIYKTLADTGALLVYKIDID-YEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNHLIKVDNIVHI  350 (359)
T ss_dssp             HHHHHHHTTTCEEEEEEECC-HHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSSHHHHHTBCCCTTEEEE
T ss_pred             hhhhccccccceEEEEEECC-HHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhhHhHhhcCCCCCEEEEe
Confidence            4455661111  78999997 778888888873   55  7888877776421    11 1122467766653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.10  E-value=0.0002  Score=64.45  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHH
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +++ |++++|+||||||||||++.|+
T Consensus       175 I~~-Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VET-GSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EET-TSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCC-CcEEEEEcCCCCChHHHHHHHH
Confidence            344 9999999999999999999664

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.09  E-value=0.00032  Score=56.99  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.+|+|||||||||++.+|.-.+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.09  E-value=0.00028  Score=62.03  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh-ccC
Q 043263           95 IVISGPSGVGKDTVIKKLRE-SRD  117 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~-~~~  117 (286)
                      +.|+||+|+||||++++|++ ++.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~   62 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFG   62 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            99999999999999999999 544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.08  E-value=0.00032  Score=58.89  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=23.9

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +......++. |  +.|+||+|+||||+++.|++.+.
T Consensus        37 ~~~~~~~~~~-~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           37 FQKLGGKIPK-G--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             C-----CCCC-E--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCC-e--EEEECcCCCCHHHHHHHHHHHcC
Confidence            4444444443 4  89999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.00035  Score=57.91  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|++++|+|+|||||||++..++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999766654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.03  E-value=0.00038  Score=61.17  Aligned_cols=63  Identities=11%  Similarity=0.020  Sum_probs=38.3

Q ss_pred             EeCHH------HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          188 RVDIQ------GARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       188 ~~~~q------~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                      +|++|      +++++++++.+|+++|+      ||+.....+.+.|.+.  .+.+...++|+...       ...||+|
T Consensus       251 ~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-------~~~~d~~  323 (339)
T 3qkt_A          251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-------KDAADHV  323 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-------GGGCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-------HHhCCEE
Confidence            45667      56677788767777666      5554445555555442  22355566776332       4678998


Q ss_pred             EECC
Q 043263          254 VVNA  257 (286)
Q Consensus       254 iv~~  257 (286)
                      ++++
T Consensus       324 ~~l~  327 (339)
T 3qkt_A          324 IRIS  327 (339)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.03  E-value=0.00015  Score=70.95  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=46.1

Q ss_pred             EEEEeCHHHHHHHHHHhCCCc--EEEE------EecCCHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEE
Q 043263          185 IVLRVDIQGARTLRRILGDSA--VFVF------LAAESEMALVE---RLVERKTENREELLVRIATAREEVQHVKNFDYV  253 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~--~~Il------ld~~~~~~l~~---rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~v  253 (286)
                      .+++|+.|++++|+++..+|.  ++||      ||+.+.+.+.+   +|.+. +.+...|.|+++.       +..||+|
T Consensus       379 tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVeHdl~~-------l~~aD~i  450 (842)
T 2vf7_A          379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVEHDLDV-------IRRADWL  450 (842)
T ss_dssp             GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHH-------HTTCSEE
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCHHH-------HHhCCEE
Confidence            455788999999999997774  4444      44444555555   44443 3488889999986       4679999


Q ss_pred             EEC
Q 043263          254 VVN  256 (286)
Q Consensus       254 iv~  256 (286)
                      +++
T Consensus       451 i~l  453 (842)
T 2vf7_A          451 VDV  453 (842)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            999

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.01  E-value=0.00035  Score=60.41  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +.+|+|+|++|+|||||++.|.+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            668999999999999999999975

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.99  E-value=0.00043  Score=54.75  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.98  E-value=0.00035  Score=55.38  Aligned_cols=23  Identities=30%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|++.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999999875

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.98  E-value=0.00032  Score=62.30  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +++|+|++|||||||++.|.+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            49999999999999999999764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.97  E-value=0.00052  Score=65.13  Aligned_cols=27  Identities=19%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .|..++|+||+|+||||++++|++++.
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            488999999999999999999999875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.97  E-value=0.00047  Score=55.63  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      |..|+|+||+||||||++..|+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            7889999999999999999998764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.96  E-value=0.00022  Score=70.45  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=47.0

Q ss_pred             EEEEeCHHHHHHHHHHhCCCc--EEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          185 IVLRVDIQGARTLRRILGDSA--VFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~--~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      .+++|+.||+++|+++..+|.  ++||      ||+.+...+.+.|.+.  .+.|...++|+++..       ..||+|+
T Consensus       464 ~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~-------~~aD~ii  536 (916)
T 3pih_A          464 TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI-------RNADHII  536 (916)
T ss_dssp             GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH-------HTCSEEE
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-------HhCCEEE
Confidence            456788899999999997665  5555      5555566666666543  244778889988763       4599999


Q ss_pred             EC
Q 043263          255 VN  256 (286)
Q Consensus       255 v~  256 (286)
                      ++
T Consensus       537 ~l  538 (916)
T 3pih_A          537 DI  538 (916)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.95  E-value=0.00067  Score=62.34  Aligned_cols=48  Identities=25%  Similarity=0.418  Sum_probs=35.1

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+++++...+..  .+.++...++. |  +.|+||+|+||||+++++++...
T Consensus        25 ~~~l~e~v~~l~~~~~~~~~g~~~p~-g--vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           25 IEELKEVVEFLKDPSKFNRIGARMPK-G--ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             HHHHHHHHHHHHCTHHHHTTTCCCCS-E--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhChHHHhhcCCCCCC-e--EEEECCCCCCHHHHHHHHHHHcC
Confidence            4456666555543  45566655554 6  88999999999999999998754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.94  E-value=0.00057  Score=59.92  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=22.2

Q ss_pred             CeE--EEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLI--IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~i--i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      |.+  +.|.||+|+||||+++++++.+
T Consensus        44 g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           44 GKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            444  8999999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.89  E-value=0.00092  Score=57.62  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+||||++++|++.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhC
Confidence            66799999999999999999998764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.85  E-value=0.00024  Score=70.03  Aligned_cols=65  Identities=15%  Similarity=0.085  Sum_probs=45.7

Q ss_pred             EEEEeCHHHHHHHHHHhCCC--cEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEE
Q 043263          185 IVLRVDIQGARTLRRILGDS--AVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVV  254 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~--~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~vi  254 (286)
                      .+++|+.||+++|+++...+  .++||      ||+...+.+.+.|++.  .+.|...|.|+++.       +..||+|+
T Consensus       504 tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~-------i~~ADrIi  576 (972)
T 2r6f_A          504 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT-------MLAADYLI  576 (972)
T ss_dssp             GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH-------HHSCSEEE
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------HHhCCEEE
Confidence            45678889999999998764  44444      4444455565544432  24488889999886       35699999


Q ss_pred             EC
Q 043263          255 VN  256 (286)
Q Consensus       255 v~  256 (286)
                      ++
T Consensus       577 ~L  578 (972)
T 2r6f_A          577 DI  578 (972)
T ss_dssp             EE
T ss_pred             Ee
Confidence            98

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.85  E-value=0.0003  Score=56.57  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ...|+|+|++|+|||||++.|.+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999975

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.82  E-value=0.00052  Score=60.64  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|.++.|.||+|||||||+..++...
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999998764

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.79  E-value=0.00064  Score=62.92  Aligned_cols=27  Identities=15%  Similarity=0.132  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+|.|+|.+||||||+++.|+..+.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999998874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.71  E-value=0.00076  Score=61.13  Aligned_cols=27  Identities=37%  Similarity=0.480  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+++++|++||||||++..|+..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            479999999999999999999997764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.71  E-value=0.001  Score=54.60  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            67799999999999999999987653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.70  E-value=0.00094  Score=53.20  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++++++...  ...|+|+|++|+|||||++.|.+.
T Consensus        14 l~~~~~~~~--~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           14 LASLGLWNK--HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ------------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHhhccCC--ccEEEEECCCCCCHHHHHHHHhcC
Confidence            344444333  346899999999999999999863

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.70  E-value=0.00092  Score=55.42  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ...|+|+|++|+|||||++.|.+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCC
Confidence            4569999999999999999999753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.68  E-value=0.0014  Score=50.98  Aligned_cols=25  Identities=32%  Similarity=0.589  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +...|+|+|++|+|||||++.|.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3677999999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.65  E-value=0.0013  Score=51.75  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|+||+|+||||+++.++..+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998765

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.64  E-value=0.00033  Score=65.19  Aligned_cols=65  Identities=11%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             EEeCHHHHHHHHHHhCCC--cEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          187 LRVDIQGARTLRRILGDS--AVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~--~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      ++|++|++.+|++++.+|  +++||      ||+.....+.+.|.+. .+.+...++|++...       ..||+++++.
T Consensus       399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~-------~~~d~~~~~~  471 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-------ARAHHHYKVE  471 (517)
T ss_dssp             CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHH-------HHSSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-------HhCCEEEEEe
Confidence            466789999999998788  77777      6666566666655542 134667778887653       4599998884


Q ss_pred             C
Q 043263          258 E  258 (286)
Q Consensus       258 ~  258 (286)
                      +
T Consensus       472 ~  472 (517)
T 4ad8_A          472 K  472 (517)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.63  E-value=0.0014  Score=50.09  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..++++|++|+||||+++.|.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.63  E-value=0.0018  Score=55.40  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+||||+++.+++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            56699999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.62  E-value=0.0012  Score=55.98  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      -..|+|+|++|||||||++.|.+..
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3569999999999999999999863

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0014  Score=51.96  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++||||||+++.|.+.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.59  E-value=0.0013  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.58  E-value=0.0014  Score=52.64  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.|.||+|+||||+++.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            669999999999999999998765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.58  E-value=0.0016  Score=51.28  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |.-+.|+|+||+||||++..|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            777999999999999999988764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.53  E-value=0.001  Score=59.54  Aligned_cols=24  Identities=42%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +..++|+|++|+|||||++.|.+.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            678999999999999999999975

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.51  E-value=0.0016  Score=50.02  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+++|++|+|||||++.|.+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.51  E-value=0.0023  Score=49.39  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+-
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.50  E-value=0.0017  Score=49.69  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            356999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.50  E-value=0.0016  Score=49.79  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+++|++|+||||+++.|.+.
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45999999999999999999864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.50  E-value=0.0022  Score=56.71  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +..++|+|.+|+|||||++.|.+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            356999999999999999999974

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.48  E-value=0.0012  Score=58.26  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|.++.|.|++||||||++..++...
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999998887543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.48  E-value=0.0014  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46999999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.47  E-value=0.0015  Score=51.52  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.46  E-value=0.0017  Score=49.90  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.|+++|++|+|||||++.|.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.46  E-value=0.0017  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45999999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.46  E-value=0.0015  Score=51.13  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|+||+|+||||+++.++..+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.45  E-value=0.0017  Score=49.96  Aligned_cols=23  Identities=30%  Similarity=0.635  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.45  E-value=0.0018  Score=49.76  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.45  E-value=0.0016  Score=50.15  Aligned_cols=23  Identities=35%  Similarity=0.654  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.45  E-value=0.0019  Score=50.35  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|||||||++.|.+.
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.44  E-value=0.0018  Score=50.01  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.44  E-value=0.0031  Score=53.46  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.-+.|.||+|+||||+++.++..+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45599999999999999999998765

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.44  E-value=0.0014  Score=57.25  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+|+|-|+.||||||++++|+..+.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999999998775

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.43  E-value=0.0019  Score=49.76  Aligned_cols=24  Identities=21%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+++|++|+|||||++.|.+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            346999999999999999999863

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.42  E-value=0.0016  Score=50.20  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.42  E-value=0.0022  Score=49.98  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456999999999999999999865

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.42  E-value=0.0012  Score=50.74  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.|+|+|++|+|||||++.|.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            35899999999999999999754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.40  E-value=0.003  Score=49.84  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            456999999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.40  E-value=0.0021  Score=52.24  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+++|+|.+||||||+++.|.+..
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.40  E-value=0.002  Score=55.30  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ...+.|+||+|+||||+++.|++.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3579999999999999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.38  E-value=0.002  Score=54.82  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|||||||++.|.+.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            356999999999999999999975

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.38  E-value=0.002  Score=57.29  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +.+.+|+|+|||||||++.+|.
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999987

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0029  Score=56.68  Aligned_cols=29  Identities=21%  Similarity=0.508  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHF  121 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~  121 (286)
                      +|  +.|.||+|+|||++++++++......+
T Consensus       183 rG--vLL~GPPGTGKTllAkAiA~e~~~~f~  211 (405)
T 4b4t_J          183 KG--VILYGPPGTGKTLLARAVAHHTDCKFI  211 (405)
T ss_dssp             CC--EEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred             Cc--eEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence            36  899999999999999999988653333

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0025  Score=57.81  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSL  119 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~  119 (286)
                      |.|.||+|+|||++++++++.+...
T Consensus       218 vLL~GPPGtGKTllAkAiA~e~~~~  242 (437)
T 4b4t_L          218 VLLYGPPGTGKTLLAKAVAATIGAN  242 (437)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCC
Confidence            9999999999999999999886533

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.37  E-value=0.0025  Score=50.46  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            466999999999999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.37  E-value=0.00077  Score=59.78  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=28.4

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..+.+.+++..|+.  .+.+..       ..|+|+|++|+|||||++.|.+.
T Consensus        16 ~~v~~~~l~~~~~~k~~~~~~~-------~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           16 GYVGFANLPNQVHRKSVKKGFE-------FTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             -----CCHHHHHHTHHHHHCCE-------ECEEECCCTTSCHHHHHHHHTTC
T ss_pred             ceEEeccchHHhCCeeecCCCC-------EEEEEEcCCCCCHHHHHHHHhCC
Confidence            34677788877764  223222       34799999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.36  E-value=0.0021  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999863

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.36  E-value=0.003  Score=60.51  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++..++|+|++|+|||||++.|.+..
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~   33 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKT   33 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhc
Confidence            48999999999999999999999764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.35  E-value=0.0023  Score=56.22  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=24.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +++ |.++.|.|++||||||++..++..
T Consensus       119 l~~-G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IES-MAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCS-SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence            444 999999999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0026  Score=57.59  Aligned_cols=24  Identities=29%  Similarity=0.689  Sum_probs=22.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCc
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      +.|.||+|+|||++++.+++.+..
T Consensus       209 iLL~GPPGtGKT~lakAiA~~~~~  232 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANSTKA  232 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            999999999999999999987653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.34  E-value=0.0022  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.33  E-value=0.0022  Score=50.85  Aligned_cols=24  Identities=29%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            356999999999999999999874

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.33  E-value=0.002  Score=55.81  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-+|+|+|.+|+|||||++.|.+.
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            567999999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.33  E-value=0.0022  Score=50.36  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.33  E-value=0.0035  Score=49.72  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456999999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.32  E-value=0.0024  Score=52.02  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.|.||+|+||||+++.++..+
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.31  E-value=0.0024  Score=48.60  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.-+.|.|++|+|||++++.|....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            4458999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.31  E-value=0.0024  Score=48.98  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.30  E-value=0.0017  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.678  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.29  E-value=0.0024  Score=49.70  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.29  E-value=0.002  Score=56.76  Aligned_cols=25  Identities=36%  Similarity=0.466  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|+||+|+||||+++.+++.+
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.27  E-value=0.0022  Score=53.93  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|.+|||||||++.|.+.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.27  E-value=0.0025  Score=50.79  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      |.++.++|+.||||||++-.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            8899999999999999984443

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.27  E-value=0.0023  Score=49.69  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999854

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.27  E-value=0.0032  Score=52.57  Aligned_cols=26  Identities=27%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.-+.|.||+|+||||+++.++..+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34488999999999999999998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.27  E-value=0.0017  Score=50.93  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +...|+|+|++|+|||||++.|.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            367799999999999999998874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.27  E-value=0.0022  Score=50.50  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4899999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.26  E-value=0.0026  Score=49.59  Aligned_cols=24  Identities=25%  Similarity=0.660  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.26  E-value=0.0022  Score=55.67  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|.||+|+||||+++.++..+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4569999999999999999999865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.25  E-value=0.0028  Score=50.01  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+++|.+|+|||||++.|.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.25  E-value=0.0037  Score=53.63  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+|||++++.++..+.
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688899999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.25  E-value=0.0026  Score=49.38  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356999999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.25  E-value=0.0031  Score=51.09  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            456999999999999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.24  E-value=0.0027  Score=49.71  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            456999999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.22  E-value=0.0031  Score=49.82  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..|+|+|++|+|||||++.|.+.+.
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4699999999999999999987654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.21  E-value=0.003  Score=49.95  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            356999999999999999877653

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=96.21  E-value=0.0018  Score=56.59  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+|+|-|+.||||||+++.|+..+.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            478999999999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.21  E-value=0.0029  Score=55.92  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.|+||+|+||||+++.+++.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.20  E-value=0.0027  Score=49.87  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356999999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.18  E-value=0.0029  Score=49.32  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.18  E-value=0.0032  Score=54.49  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=25.9

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           81 FDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        81 l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++.....+  .|.-++|+|+||+||||++..|.+.
T Consensus       135 ~H~~~v~~--~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          135 LHGVLVDV--YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EESEEEEE--TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             eeEEEEEE--CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            44443333  3788999999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.18  E-value=0.0029  Score=50.49  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.17  E-value=0.0042  Score=50.86  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            577999999999999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.17  E-value=0.0034  Score=53.86  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|.||+|+||||+++.++..+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            5669999999999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.17  E-value=0.003  Score=49.89  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.15  E-value=0.0031  Score=49.61  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.14  E-value=0.0029  Score=51.30  Aligned_cols=29  Identities=21%  Similarity=0.275  Sum_probs=24.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|+ ...+.|.||+|+||||++..|+..+.
T Consensus        55 iPk-kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPK-KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTT-CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCc-ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            443 55699999999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.14  E-value=0.0035  Score=49.05  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.14  E-value=0.0036  Score=51.02  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+||||+++.|+..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            567999999999999999998865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.13  E-value=0.0032  Score=57.12  Aligned_cols=27  Identities=33%  Similarity=0.554  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+|+++|++||||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0026  Score=51.23  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            457999999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.13  E-value=0.0035  Score=50.15  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456999999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.003  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.626  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.12  E-value=0.0033  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346999999999999999999753

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=96.12  E-value=0.0023  Score=56.68  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+|+|-|+.||||||+++.|...+.
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            488999999999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.12  E-value=0.0033  Score=49.78  Aligned_cols=23  Identities=26%  Similarity=0.626  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.12  E-value=0.0034  Score=52.57  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|||||||++.|.+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.11  E-value=0.0037  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.11  E-value=0.0036  Score=49.17  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.10  E-value=0.0032  Score=54.28  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999999999875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.10  E-value=0.0027  Score=56.03  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ...++|+|++|+||||+++.|.+..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5689999999999999999998753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.08  E-value=0.0032  Score=55.92  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .++|+|++|+|||||++.|.+.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999876

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.08  E-value=0.0035  Score=49.50  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            56999999999999999999753

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.07  E-value=0.0056  Score=54.04  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+||||+++.|+..+.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            45599999999999999999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.06  E-value=0.0034  Score=50.26  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            456999999999999999999864

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.05  E-value=0.0038  Score=51.56  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +|+.+++.||+||||||++.++.
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCcHHhHHHHH
Confidence            38899999999999999887664

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.04  E-value=0.0035  Score=50.07  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.04  E-value=0.0039  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+|+|++|+|||||++.|.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4699999999999999999984

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.04  E-value=0.0024  Score=51.05  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhc
Confidence            356999999999999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.04  E-value=0.0035  Score=50.49  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346999999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.03  E-value=0.0045  Score=49.11  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            456999999999999999999863

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.03  E-value=0.0042  Score=49.17  Aligned_cols=24  Identities=25%  Similarity=0.528  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            346999999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.03  E-value=0.0039  Score=49.31  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            456999999999999999999864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.03  E-value=0.0032  Score=50.01  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++.|+|++||||||++..|+..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc
Confidence            3789999999999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.03  E-value=0.0039  Score=49.37  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -..|+|+|++|+|||||++.|.+.
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            356999999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.03  E-value=0.0048  Score=48.09  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|++|+|||||++.+.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456999999999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0061  Score=55.19  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSL  119 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~  119 (286)
                      |.|.||+|+|||++++++++.....
T Consensus       218 vLLyGPPGTGKTllAkAiA~e~~~~  242 (434)
T 4b4t_M          218 ALMYGPPGTGKTLLARACAAQTNAT  242 (434)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEECcCCCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999886533

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.01  E-value=0.0051  Score=48.92  Aligned_cols=24  Identities=25%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.01  E-value=0.0029  Score=55.09  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=23.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +++ |.++.|.|++||||||++..++..
T Consensus       104 l~~-G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          104 IET-RTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             EET-TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCC-CcEEEEECCCCCCHhHHHHHHHHH
Confidence            444 999999999999999999998864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.01  E-value=0.0044  Score=48.84  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+-
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999853

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.00  E-value=0.0039  Score=50.07  Aligned_cols=23  Identities=30%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .+.|.||+|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.00  E-value=0.0045  Score=48.18  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.+.+.
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456999999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.99  E-value=0.0042  Score=54.80  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+|+|+|++|+||||+++.|+..+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.99  E-value=0.0039  Score=48.93  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.99  E-value=0.0038  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.629  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.98  E-value=0.004  Score=52.37  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|||||||++.|.+.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            356999999999999999999874

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0045  Score=56.33  Aligned_cols=24  Identities=29%  Similarity=0.631  Sum_probs=22.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCc
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      |.|.||+|+|||++++++++....
T Consensus       246 ILLyGPPGTGKTlLAkAiA~e~~~  269 (467)
T 4b4t_H          246 ILLYGPPGTGKTLCARAVANRTDA  269 (467)
T ss_dssp             EEECSCTTSSHHHHHHHHHHHHTC
T ss_pred             eEeeCCCCCcHHHHHHHHHhccCC
Confidence            899999999999999999987653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.97  E-value=0.0051  Score=49.07  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            567999999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.97  E-value=0.0043  Score=49.22  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|.+|+|||||++.|.+.
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            456999999999999999999864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.96  E-value=0.0045  Score=56.54  Aligned_cols=29  Identities=14%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           87 CPPPNPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        87 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      -+++ |.++.|.|++|+||||++..++...
T Consensus       199 Gl~~-G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          199 GFQR-SDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCT-TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCC-CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455 9999999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0048  Score=48.70  Aligned_cols=24  Identities=38%  Similarity=0.699  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.94  E-value=0.0049  Score=48.75  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|.+|+|||||++.|.+.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            456999999999999999988764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.0055  Score=55.21  Aligned_cols=24  Identities=21%  Similarity=0.515  Sum_probs=22.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCc
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      |.|.||+|+|||++++++++....
T Consensus       219 vLLyGPPGTGKTlLAkAiA~e~~~  242 (437)
T 4b4t_I          219 VILYGAPGTGKTLLAKAVANQTSA  242 (437)
T ss_dssp             EEEESSTTTTHHHHHHHHHHHHTC
T ss_pred             CceECCCCchHHHHHHHHHHHhCC
Confidence            999999999999999999987653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.94  E-value=0.0046  Score=52.47  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|||||||++.|.+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999999875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.93  E-value=0.0049  Score=49.71  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.93  E-value=0.0028  Score=51.49  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457999999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.93  E-value=0.0055  Score=49.22  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            567999999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.92  E-value=0.0037  Score=50.06  Aligned_cols=24  Identities=21%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456999999999999999999753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.92  E-value=0.0056  Score=53.26  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.-+.|.||+|+||||+++.++..+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            3558999999999999999999876

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.91  E-value=0.0034  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.751  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45999999999999999999753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.90  E-value=0.0047  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456999999999999999999874

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.89  E-value=0.0021  Score=54.07  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.|.||+|+||||+++.|+....
T Consensus        47 vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            78999999999999999998654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.89  E-value=0.005  Score=51.96  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ...+.|.||+|+||||+++.++....
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            46699999999999999999998654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.87  E-value=0.004  Score=49.41  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.87  E-value=0.0057  Score=51.62  Aligned_cols=24  Identities=38%  Similarity=0.619  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..++++|.+|+||||+++.|.+..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            479999999999999999999754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.84  E-value=0.0059  Score=50.23  Aligned_cols=26  Identities=23%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|.++.++|+.|+||||++-.++..+
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999876665443

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.83  E-value=0.0046  Score=53.28  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|||||||++.|.+.
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCC
Confidence            346999999999999999999875

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=95.83  E-value=0.48  Score=40.53  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCccee
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHF  121 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~  121 (286)
                      .+.+|++-|.-||||+|.++.|...+..-++
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~  115 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSA  115 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTE
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCC
Confidence            4789999999999999999999988764333

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.82  E-value=0.0074  Score=54.79  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCcceee
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDSLHFV  122 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~  122 (286)
                      -+.|.||+|+||||+++.|++.++...+.
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~   80 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLANAPFIK   80 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence            38999999999999999999987643333

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.81  E-value=0.0037  Score=49.46  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            567999999999999999999764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.80  E-value=0.0039  Score=52.83  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            35999999999999999998654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.80  E-value=0.0047  Score=49.13  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ...|+|+|++|+|||||++.|.+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            56799999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.80  E-value=0.0048  Score=49.87  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999853

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.79  E-value=0.0046  Score=53.94  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.|.||+|+||||+++.+++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.79  E-value=0.0048  Score=52.73  Aligned_cols=26  Identities=35%  Similarity=0.723  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.-+.|.||+|+||||+++.++..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34588999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.79  E-value=0.0052  Score=49.18  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.79  E-value=0.0049  Score=56.07  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|.||+|+||||+++.+++.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3459999999999999999998764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.79  E-value=0.0052  Score=54.90  Aligned_cols=25  Identities=24%  Similarity=0.130  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.-++|+|++||||||+++.|...+
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4558999999999999999998653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0058  Score=49.75  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.+.+.
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.78  E-value=0.0069  Score=51.67  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..++++|.+|+||||+++.|.+..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCc
Confidence            5679999999999999999998754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.78  E-value=0.013  Score=56.99  Aligned_cols=39  Identities=26%  Similarity=0.471  Sum_probs=28.9

Q ss_pred             HhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           76 SLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        76 ~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .++..+......++. |  |.|.||+|+|||++++.+++.+.
T Consensus       225 ~~p~~f~~~g~~~p~-G--ILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          225 RHPALFKAIGVKPPR-G--ILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             HCCGGGTSCCCCCCC-E--EEEECCTTSCHHHHHHHHHTTTT
T ss_pred             cCHHHHhhcCCCCCC-e--EEEECCCCCCHHHHHHHHHHHhC
Confidence            344345555444443 5  99999999999999999998765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.77  E-value=0.0074  Score=51.44  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCC
Confidence            356999999999999999999875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.77  E-value=0.0083  Score=52.04  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.-+.|.||+|+|||++++.++....
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            34599999999999999999998754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.76  E-value=0.0036  Score=56.83  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+|+|+|++|+||||++..|+..+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999988653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.75  E-value=0.0063  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            567999999999999999999753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.75  E-value=0.0054  Score=53.99  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56799999999999999999997754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.73  E-value=0.0053  Score=49.73  Aligned_cols=23  Identities=22%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ...|+|+|++|+|||||++.|.+
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35699999999999999999975

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.73  E-value=0.0051  Score=50.75  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +|.++.|.|++|+||||++-.++
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            49999999999999999997654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.72  E-value=0.0048  Score=53.52  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|.++.|.|++||||||++..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999888753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.72  E-value=0.0057  Score=48.44  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.72  E-value=0.0043  Score=56.67  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            357999999999999999999875

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.71  E-value=0.0032  Score=49.30  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=10.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|++|+|||||++.|.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999998753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=95.70  E-value=0.0045  Score=56.85  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +..|+|+|.+|+|||||++.|.+.
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            566999999999999999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.70  E-value=0.005  Score=55.93  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.69  E-value=0.0051  Score=54.20  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+.|.||+|+||||+++.++..+
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5679999999999999999998765

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.69  E-value=0.0068  Score=55.29  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|+.++|.|++|+|||||++.|+..
T Consensus       150 kGq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          150 KGGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             TTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCccHHHHHHHhh
Confidence            5899999999999999999998765

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.68  E-value=0.007  Score=52.48  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|.++.|.|++|+||||++..++..
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4999999999999999999888754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.67  E-value=0.01  Score=52.28  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.-+.|.||+|+||||+++.++..+.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC
Confidence            45699999999999999999998764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.63  E-value=0.0074  Score=53.48  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|+||+|+||||+++.|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            34589999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.62  E-value=0.0065  Score=48.65  Aligned_cols=24  Identities=25%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhC
Confidence            356999999999999999999764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.61  E-value=0.008  Score=48.24  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .-.|+|+|.+|+|||||++.+.+.
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            567999999999999999998853

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.61  E-value=0.0065  Score=48.36  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ...|+|+|.+|+|||||++.+.+.+
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            4569999999999999999887754

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=95.60  E-value=0.0043  Score=54.34  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHH-HHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVI-KKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~-~~L~~~~~  117 (286)
                      +|.+|.|-|+-||||||++ ++|...+.
T Consensus        11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~   38 (341)
T 1osn_A           11 GVLRIYLDGAYGIGKTTAAEEFLHHFAI   38 (341)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            4889999999999999999 99998875

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.58  E-value=0.0083  Score=48.43  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKL  112 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L  112 (286)
                      +.++.++|++|||||+++..+
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~   25 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSM   25 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHH
Confidence            578999999999999998665

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.57  E-value=0.0091  Score=52.63  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .-+.|.||+|+||||+++.++..+.
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            3488999999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.0076  Score=49.09  Aligned_cols=23  Identities=35%  Similarity=0.703  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|+|||||++.|.+.
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.56  E-value=0.0069  Score=50.91  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|+|||||++.|.+.
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.55  E-value=0.0074  Score=52.48  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+.|+||+|+||||+++.++....
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            3489999999999999999987754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.54  E-value=0.0071  Score=51.06  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+++|.+|+|||||++.|.+.
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	5e-39
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	6e-34
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	1e-31
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	4e-30
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	2e-27
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	2e-24
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	5e-13
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-11
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-07
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	3e-07
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	6e-07
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	8e-07
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	8e-07
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	9e-07
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	1e-06
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	9e-06
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	2e-05
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	5e-05
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	7e-05
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	1e-04
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	1e-04
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	3e-04
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-04
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	4e-04
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	4e-04
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	4e-04
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	5e-04
d1gsia_	208	c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tu	7e-04
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	8e-04
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	0.001
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	0.001
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	0.003
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.003
d1p5zb_	241	c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sa	0.003
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	0.003

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (336), Expect = 5e-39
 Identities = 63/196 (32%), Positives = 117/196 (59%), Gaps = 5/196 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRES--RDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
            + ++S PSG GK ++I+ L ++         V+ T+R  RPGEV+G+ YFFV+ +EF +
Sbjct: 3   TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 62

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
           M+ ++  LE+A V+G+Y G  ++ I + +A G D+ L +D QGA+ +R+     A  +F+
Sbjct: 63  MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQK-MPHARSIFI 121

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
              S++ L  RL  R  ++ E +  R+A A  E+ H   +DY++VN +   D+A+  +++
Sbjct: 122 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKT 179

Query: 271 VIDAEKAKVRQRSAVI 286
           +I AE+ ++ ++    
Sbjct: 180 IIRAERLRMSRQKQRH 195

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (300), Expect = 6e-34
 Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 5/185 (2%)

Query: 95  IVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           IVISGPSG GK T++KKL     DS  F V++T+R  R GEVNGKDY FVS +EF  M+ 
Sbjct: 4   IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
            NE +E+A   G+Y G     +++    G   +L +D+QG ++++ I   +A F+F+A  
Sbjct: 64  NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN--FDYVVVNAEGKLDSAVKLVESV 271
           S   L +RL  R TE  E +  R++ A+ E+ + +    D V+VN +  LD A K ++  
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 181

Query: 272 IDAEK 276
           I AEK
Sbjct: 182 IFAEK 186

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 1e-31
 Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 7/190 (3%)

Query: 95  IVISGPSGVGKDTVIKKLRESRDS-LHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           +V+SGPSG GK T++KKL +   S   F V+ T+R  RPGE +GKDY+FV++E   + + 
Sbjct: 3   VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIA 62

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
             + +E+A   G+  G  K+ +R   A     VL VD+QG R++++      +++F+   
Sbjct: 63  AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-DLCPIYIFVQPP 121

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKN---FDYVVVNAEGKLDSAVKLVES 270
           S   L +RL  R TE  E L  R+A AR +++  K    FD V++N +  LD A   ++ 
Sbjct: 122 SLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYATLKQ 179

Query: 271 VIDAEKAKVR 280
            +  E  K +
Sbjct: 180 ALSEEIKKAQ 189

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  110 bits (274), Expect = 4e-30
 Identities = 75/182 (41%), Positives = 110/182 (60%), Gaps = 5/182 (2%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
            ++V+SGPS VGK TV++ LRE   +LHF V+AT+R  RPGEV+G DY F+    F Q++
Sbjct: 3   RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 62

Query: 153 DKNELLEYALVYGDYK--GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
           D+ ELLE+A ++G     G   + +R   A G  +++ VD+ GAR +++     AV VFL
Sbjct: 63  DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-MPEAVTVFL 121

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
           A  S   L  RL+ R TE  + +  R+ TAR E+    +FD VVVN    L+SA   + S
Sbjct: 122 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR--LESACAELVS 179

Query: 271 VI 272
           ++
Sbjct: 180 LL 181

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 94  IIVISGPSGVGKDTVIKKLRESR-DSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
            +V+ G  GVG+  +   L     D   + +  T+RP +  E NGK+Y+FVS ++ +Q +
Sbjct: 5   TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDI 64

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
             NE LEY        G   + IR+   +G    +      A  + R    +   VF+AA
Sbjct: 65  SNNEYLEYGSHEDAMYGTKLETIRKIHEQGLI-AILDVEPQALKVLRTAEFAPFVVFIAA 123

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQ--HVKNFDYVVVNAEGKLDSAVKLVES 270
            +    +           +E L R+    + +Q  +   FD  ++N E  +D  ++ +E 
Sbjct: 124 PTITPGLN---------EDESLQRLQKESDILQRTYAHYFDLTIINNE--IDETIRHLEE 172

Query: 271 VID 273
            ++
Sbjct: 173 AVE 175

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.7 bits (237), Expect = 2e-24
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 95  IVISGPSGVGKDTVIKKL-RESRDSLHFVVTATSRPMRPGEVNGKDYFF-VSKEEFLQMV 152
           I+I GP    KD     L  E  D     V  T+RP R  E++G+DY F  S+E+  + +
Sbjct: 12  IIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 68

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
             ++ +E         G   + +RE   +G   +L V     R   +      + +F+  
Sbjct: 69  QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRR-LQAAHLHPIAIFIRP 127

Query: 213 ESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVI 272
            S   ++E       E   +   R    + E +  + F  +V       +     V+ VI
Sbjct: 128 RSLENVLEINKRITEEQARKAFDRA--TKLEQEFTECFSAIVEGDS--FEEIYHKVKRVI 183

Query: 273 DAEKAK 278
           +     
Sbjct: 184 EDLSGP 189

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 63.9 bits (154), Expect = 5e-13
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 16/184 (8%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           + +I+GP+GVGK T  K+L    D+  ++       M  G    +  +   +   L   +
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVG--GYRPPWESDELLALTWKN 61

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
             +L    L+  +   +      +                   ++  + D  +   +   
Sbjct: 62  ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQT-----------VQAKVDDVEIRFIILWT 110

Query: 214 SEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK-LDSAVKLVESVI 272
           +   L+ R   RK +  E++  R     EE +     +    N       +   +V+++ 
Sbjct: 111 NREELLRRDALRKKD--EQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168

Query: 273 DAEK 276
              +
Sbjct: 169 TNPR 172

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 22/190 (11%), Positives = 58/190 (30%), Gaps = 24/190 (12%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           I+++SG  G GK T+ + L                        G        ++    + 
Sbjct: 6   ILLLSGHPGSGKSTIAEALANL--------------------PGVPKVHFHSDDLWGYIK 45

Query: 154 KNELLEYALVYGDYKG----IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
              +  +             I       Y  +GY ++L   ++             +   
Sbjct: 46  HGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYI 105

Query: 210 LAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVE 269
           +   +    +ER ++R  ++  + LV      +         +V+  +    D A++   
Sbjct: 106 VLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAI 165

Query: 270 SVIDAEKAKV 279
           + + + + ++
Sbjct: 166 NALQSGRFRI 175

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 23/178 (12%), Positives = 44/178 (24%), Gaps = 13/178 (7%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           +I+++G S  GK  +++ L+             S       +        S E  ++   
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS------LIEAMPLKMQSAEGGIEFDA 58

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRR---ILGDSAVFVFL 210
              +              +  +    A    I+  V + GA    R    +GD  V    
Sbjct: 59  DGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVG 118

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLV 268
                     R   R          +       V     +D  V     +       +
Sbjct: 119 VRCDGAVAEGRETARGDRVAGMAAKQ----AYVVHEGVEYDVEVDTTHKESIECAWAI 172

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 11/190 (5%)

Query: 91  NPLIIVISGPSGVGKDTVIKKLRE-------SRDSLHFVVTATSRPMRPGEVNGKDYFFV 143
           +P+II I+G  G GK TV   LR                       ++           +
Sbjct: 2   HPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRL 61

Query: 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD 203
            +    ++V  +     AL    +  + +  + E       +V    ++      +    
Sbjct: 62  DRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVF---LEIPLLFEKGWEG 118

Query: 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263
                 L A      V R++ R   +REE+L R      E +  K   +V+ N  G L+ 
Sbjct: 119 RLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVLEN-TGSLED 177

Query: 264 AVKLVESVID 273
             + +++V+ 
Sbjct: 178 LERALKAVLA 187

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 13/195 (6%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           PL++ + G  G GK T   ++ E     H       R  R    +          +  ++
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 152 VDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLA 211
           V     +       D       Q  +++  G+           +T+         FV   
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKA--DVSFVLFF 118

Query: 212 AESEMALVERLVERK------TENREELLVRIATAREEVQHVKNF-----DYVVVNAEGK 260
             +    +ER +ER        +NRE L  RI T  +  + + +          ++A   
Sbjct: 119 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 178

Query: 261 LDSAVKLVESVIDAE 275
           +D     V  + D E
Sbjct: 179 VDEVFDEVVQIFDKE 193

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 25/196 (12%), Positives = 60/196 (30%), Gaps = 19/196 (9%)

Query: 90  PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
             P ++ + G  G GK T    +      +H  ++A     +  +   KD   ++     
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVH--LSAGDLLRQEQQSGSKDGEMIATMIKN 61

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
             +  + +    L         K  + +   +  +     +                FV 
Sbjct: 62  GEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDF------VDTKFVL 115

Query: 210 LAAESEMALVERLVERKTENR------EELLVRIATAREEVQHVKNF-----DYVVVNAE 258
                E  + +RL++R   +       E +  R  T   + + V +         ++ A 
Sbjct: 116 FFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPAN 175

Query: 259 GKLDSAVKLVESVIDA 274
             ++     VE++  +
Sbjct: 176 RDVNEVYNDVENLFKS 191

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 21/187 (11%), Positives = 50/187 (26%), Gaps = 8/187 (4%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHF---VVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
           ++V++G  GVG  T  +   ++         +V+  S      +            +   
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYM-----AKGYDIVLRVDIQGARTLRRILGDSA 205
              K           +        +  +            +    +        I+ ++ 
Sbjct: 63  ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETT 122

Query: 206 VFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAV 265
               L          R ++  +   +   +    A            +V N  G LD AV
Sbjct: 123 GDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAV 182

Query: 266 KLVESVI 272
           + + +V+
Sbjct: 183 EELTNVL 189

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 46.3 bits (108), Expect = 9e-07
 Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 13/180 (7%)

Query: 88  PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEE 147
                L++ I G S  GK T+  +L ++       V          E   + +    +  
Sbjct: 18  KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF 77

Query: 148 FLQMVDKNELLEYALVYGDYKG---------IPKKQIREYMAKGYDIVLRVDIQGARTLR 198
               +  +       ++   K            +                + I+G    R
Sbjct: 78  EYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQR 137

Query: 199 RILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAR----EEVQHVKNFDYVV 254
           +       FV            R  ++  +N ++ + R   A     E  + +K  D V 
Sbjct: 138 KEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEPIKRADVVF 197

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 17/182 (9%)

Query: 91  NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
           +  I V+ G SG GK  V  ++   +    F+      P R  E           +    
Sbjct: 5   DHHIYVLMGVSGSGKSAVASEV-AHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW 63

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
           +   N+             I    ++++                  L R    +  F++L
Sbjct: 64  LQALNDAAFAMQRTNKVSLIVCSALKKHYRD---------------LLREGNPNLSFIYL 108

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVES 270
             + ++ +  RL  RK    +  ++       +       D +VV+ +  L+  V     
Sbjct: 109 KGDFDV-IESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIE 167

Query: 271 VI 272
           VI
Sbjct: 168 VI 169

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 9e-06
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 18/200 (9%)

Query: 85  PVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS 144
           P   P    +I + G  G GK T  +KL +    +H       R  +             
Sbjct: 1   PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQG------RAGSQY 54

Query: 145 KEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDS 204
            E     + + +++   +     +      ++    K         +  A +  R + +S
Sbjct: 55  GELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVES 114

Query: 205 AVFVFLAAESEMALVERLVERKTENR------EELLVRIATAREEVQHVKNF-----DYV 253
             F+      E  ++ERL+ER   +       E +  R  T +E    V  +       V
Sbjct: 115 K-FILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVV 173

Query: 254 VVNAEGKLDSAVKLVESVID 273
            V  +  ++   K V+  I 
Sbjct: 174 RVRCDRSVEDVYKDVQDAIR 193

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 23/187 (12%), Positives = 62/187 (33%), Gaps = 14/187 (7%)

Query: 91  NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQ 150
           +PL ++ISG    GK T  + ++      H       R               + +   +
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIA-------AGSENGKRAKE 54

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
            ++K +L+   +V    K   ++   +      D   R   Q        +      +  
Sbjct: 55  FMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLD 114

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF---DYVVVNAEGKLDSAVKL 267
             +  +           +  E++ +R+ T  + ++ + +      V V  +  +D+    
Sbjct: 115 VPDELL----VERVVFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAK 170

Query: 268 VESVIDA 274
           ++ ++ +
Sbjct: 171 IDELLGS 177

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 9/143 (6%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           II+  G  G GK T  ++        + +     R          +Y +  K+E +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 154 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAE 213
           + +  +  L  GD          + +      +         T  +  G           
Sbjct: 64  QFDTAKSILYGGDSV--------KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP 115

Query: 214 SEMALVERLVERKTENREELLVR 236
               LV+R  +R T+     ++R
Sbjct: 116 WTE-LVKRNSKRGTKAVPIDVLR 137

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 12/191 (6%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
           I +++G  GVGK TV+ K++E  D+        +          K  +   ++E  ++  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 154 KNELLEYALVYGDYKGIPKKQ------------IREYMAKGYDIVLRVDIQGARTLRRIL 201
           + +               +              IR        +   V  +   ++  +L
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122

Query: 202 GDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL 261
                 +    + +          ++   E +      A        +   V+VN EG  
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDP 182

Query: 262 DSAVKLVESVI 272
             A   +   +
Sbjct: 183 SIAANEIIRSM 193

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 30/190 (15%)

Query: 90  PNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFL 149
           P  + I+I+G  G GK ++ + +    D    +       +        +Y        +
Sbjct: 3   PKGINILITGTPGTGKTSMAEMIAAELDGFQHL---EVGKLVKENHFYTEYDTELDTHII 59

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
           +  D++ LL+               +   M    + V+         L        V V 
Sbjct: 60  EEKDEDRLLD--------------FMEPIMVSRGNHVVDYHS---SELFPERWFHMVVVL 102

Query: 210 LAAESEMALVERLVERKT------ENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263
               S   L ERL +R+       EN E  +  I    EE +     D V+V     L+ 
Sbjct: 103 HT--STEVLFERLTKRQYSEAKRAENMEAEIQCICE--EEARDAYEDDIVLVRENDTLEQ 158

Query: 264 AVKLVESVID 273
               VE + +
Sbjct: 159 MAATVEEIRE 168

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 11/186 (5%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP-MRPGEVNGKDYF-FVSKEEFLQ 150
           + +++ GP G GK T   KL E             R  +  G   G +   ++   + + 
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60

Query: 151 MVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFL 210
               NEL++  L   D        I +   +  +    +     R    I    AV  F 
Sbjct: 61  SDLTNELVDDRLNNPDAA---NGFILDGYPRSVEQAKALHEMLERRGTDI---DAVLEFR 114

Query: 211 AAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF---DYVVVNAEGKLDSAVKL 267
            +E  +    +   R  +  + +L R+   R+E   +  +       V+A G +D     
Sbjct: 115 VSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFAR 174

Query: 268 VESVID 273
               + 
Sbjct: 175 ALRALG 180

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 22/198 (11%)

Query: 91  NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVV-TATSRPMRPGEVNGKDYFFVSKEEFL 149
              II + G  G GK T  +K+ +     H          +  G   GK    + ++  L
Sbjct: 7   KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQL 66

Query: 150 QMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVF 209
             ++    +    +           I  Y           +++      R +G   + ++
Sbjct: 67  VPLETVLDMLRDAMVAKVDTSKGFLIDGYP---------REVKQGEEFERKIGQPTLLLY 117

Query: 210 LAAESEMALVERLVE------RKTENREELLVRIATAREEVQHVKNF-----DYVVVNAE 258
           + A  E    +RL++      R  +N E +  R+ T  +  + V  F         VNAE
Sbjct: 118 VDAGPETM-TKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAE 176

Query: 259 GKLDSAVKLVESVIDAEK 276
           G +D     V + +D  K
Sbjct: 177 GSVDDVFSQVCTHLDTLK 194

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 23/193 (11%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           + IV+ G  G GK T   ++ E          +T    R     G +    +K      +
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVE---KYGTPHISTGDMFRAAIQEGTELGVKAKS----FM 53

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD-----SAVF 207
           D+  L        D   I   + R   +   +  L             L           
Sbjct: 54  DQGAL------VPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKI 107

Query: 208 VFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNF-----DYVVVNAEGKLD 262
             +                 +N + +  R+     +   +  F       V +N +  + 
Sbjct: 108 EHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIK 167

Query: 263 SAVKLVESVIDAE 275
              K ++ ++   
Sbjct: 168 DVFKDLDVILQGN 180

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 20/199 (10%), Positives = 51/199 (25%), Gaps = 9/199 (4%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRP---------MRPGEVNGKDYFFV 143
            +IV+ G    GK T  +KL E+  +          P         +        D    
Sbjct: 4   ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDH 63

Query: 144 SKEEFLQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGD 203
           S           ++            +   +                +   +     L  
Sbjct: 64  SVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPK 123

Query: 204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDS 263
             + +FL  +   A        +         R      ++      ++ +V+A   +++
Sbjct: 124 PDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEA 183

Query: 264 AVKLVESVIDAEKAKVRQR 282
             + +  + +   A   ++
Sbjct: 184 VHEDIRVLSEDAIATATEK 202

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR 131
           P  ++I G  G GK T +    + ++ +  +     +   
Sbjct: 9   PFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRN 48

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 17/91 (18%), Positives = 32/91 (35%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
             IVI G  G GK T    + E+ + L       +R     ++  K    +   + +   
Sbjct: 3   KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDE 62

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGY 183
              +  E  + Y     + +  I+  +A G 
Sbjct: 63  VITDKAEVLMFYAARVQLVETVIKPALANGT 93

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 25/189 (13%), Positives = 62/189 (32%), Gaps = 17/189 (8%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           + +V+ G  G GK T  +K+  +    H    +T    R     G      +K+     +
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHI---STGDMFRAAMKEGTPLGLQAKQ----YM 53

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
           D+ +L+           + ++  ++    G+ +               +           
Sbjct: 54  DRGDLVP---DEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYV 110

Query: 213 ESEMALVERLVERKTENREELLV--RIATAREEVQHVKNF-----DYVVVNAEGKLDSAV 265
                  + L+ER T +  E  V  R+    ++++ + +F         +N E  ++   
Sbjct: 111 IHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVF 170

Query: 266 KLVESVIDA 274
             +  ++  
Sbjct: 171 ADIRELLGG 179

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           ++I I G  G GK T+++KL  +  +    V   + P R G+    D    +       +
Sbjct: 1   MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP-RYGQSVAADIAAEALHGEHGDL 59

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYM 179
             +      L   D  G          
Sbjct: 60  ASSVYAMATLFALDRAGAVHTIQGLCR 86

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRE 114
           P +I +SG +  GK +V  K+ +
Sbjct: 2   PFLIGVSGGTASGKSSVCAKIVQ 24

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 92  PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQM 151
           P +I++ G +GVGK T I KL     +  F      +        G  +   + E+    
Sbjct: 9   PFVILMVGVNGVGKTTTIGKL-----ARQF----EQQGKSVMLAAGDTFRAAAVEQLQVW 59

Query: 152 VDKNELLEYALVYGDY-KGIPKKQIREYMAKGYDIVL 187
             +N +   A   G     +    I+   A+  D+++
Sbjct: 60  GQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLI 96

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 18/188 (9%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV 152
           + I++ G    GK T  + + E          +T   +R    +G +    +K+    ++
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQI---STGDMLRAAVKSGSELGKQAKD----IM 53

Query: 153 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAA 212
           D  +L+   LV    K       +E    G+ +             +  G +  +V    
Sbjct: 54  DAGKLVTDELVIALVKERI---AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFD 110

Query: 213 ESEMALVERLVERKTENR--------EELLVRIATAREEVQHVKNFDYVVVNAEGKLDSA 264
             +  +V+R+V+   E           ++   +     +     N  Y  V+    +   
Sbjct: 111 VPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 170

Query: 265 VKLVESVI 272
              +E ++
Sbjct: 171 RADLEKIL 178

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 14/139 (10%)

Query: 93  LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR---PGEVNGKDYFFVS-KEEF 148
           +I+V  G +G GK T+  +     +  + V            P E +     FV+ +E  
Sbjct: 1   MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM 60

Query: 149 LQMVDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIV----------LRVDIQGARTLR 198
            +    N  +  +      K          + K  D V                G R + 
Sbjct: 61  REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 120

Query: 199 RILGDSAVFVFLAAESEMA 217
            +     V++      +  
Sbjct: 121 NLPYPLVVYISDPEILKKP 139

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 88  PPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHF 121
             PNP ++V  G  G GK T I++   S   +H 
Sbjct: 10  LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 43

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 94  IIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVD 153
            I I G    GK T +  L++  +    V    +R       N +      +E  +   +
Sbjct: 4   KISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARW-----CNVQSTQDEFEELTMSQKN 58

Query: 154 KNELLE 159
              +L+
Sbjct: 59  GGNVLQ 64

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 95  IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDK 154
           I+++G  GVGK T+ K+L          +            +G D  +         V  
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 64

Query: 155 NELLEYALVYGDYKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAES 214
               +                 E        VLR D        R+         L    
Sbjct: 65  ELDNQMREGGVIVDYHGCDFFPE-RWFHIVFVLRTDTN--VLYERLETRGYNEKKLTDNI 121

Query: 215 EMALV-ERLVERKTENREELLVRIATAREE 243
           +  +      E     +EE++ ++ + + E
Sbjct: 122 QCEIFQVLYEEATASYKEEIVHQLPSNKPE 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.97
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.96
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.95
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.93
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.93
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.92
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.91
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.91
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.9
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.9
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.9
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.9
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.89
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.88
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.88
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.87
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.85
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.85
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.8
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.79
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.73
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.42
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.4
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.37
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.31
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.3
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.28
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.24
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.23
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.23
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.21
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.2
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.2
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.14
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.13
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.12
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.11
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.1
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.1
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.07
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.05
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.03
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.99
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.95
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.89
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.88
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.87
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.86
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.84
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.83
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.73
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.7
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.63
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.63
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.61
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.57
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.49
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.4
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.4
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.39
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.31
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.26
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.26
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.05
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.9
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.84
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.72
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.67
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.46
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.46
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.29
d1okkd2	207	GTPase domain of the signal recognition particle r	97.27
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.23
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.2
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.2
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.18
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.1
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.08
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.07
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.07
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.04
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.03
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.03
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.02
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.99
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.98
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.97
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.97
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.95
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.94
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.91
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.9
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.9
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.88
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.85
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.85
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.85
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.82
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.82
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.82
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.76
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.75
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.7
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.66
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.66
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.62
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.6
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.59
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.58
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.51
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.49
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.49
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.47
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.46
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.46
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.45
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.45
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.45
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.4
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.37
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.35
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.32
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.32
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.3
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.29
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.28
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.27
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.25
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.25
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.24
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.2
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.19
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.18
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.17
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.17
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.16
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.07
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.07
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.06
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.04
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.92
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.81
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.81
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.77
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.76
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.74
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.74
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.69
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.69
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.67
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.65
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.64
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.63
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.58
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.57
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.51
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.49
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.49
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.47
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.42
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.42
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.42
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.4
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.4
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.3
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.24
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.24
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.22
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.15
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.98
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.92
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.88
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.85
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.8
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.7
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.56
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.53
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.53
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.51
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.45
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.31
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.29
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.27
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.19
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.06
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.06
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.03
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.87
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.78
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.62
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.51
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.36
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.27
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.23
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.22
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.75
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.63
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.33
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.51
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.48
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.33
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.27
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.22
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.03
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.02
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.96
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.43
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.35
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.11
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	90.03
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.98
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.8
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	89.63
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.63
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.49
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.4
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.39
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.18
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	88.72
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.33
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.31
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	88.25
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.07
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.95
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.74
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.34
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.83
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.83
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	84.81
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.79
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.28
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.16
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.94
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.65
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	83.25
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	80.76
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.53
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.26

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.1e-31  Score=215.75  Aligned_cols=189  Identities=33%  Similarity=0.637  Sum_probs=173.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC--cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheeccccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD--SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYK  168 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (286)
                      +|.+++|+||||||||||++.|...++  .+..++++|||+|+.|+.+|.+|+|++.++|..++.++.|++++.+++++|
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence            489999999999999999999988776  477889999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccC
Q 043263          169 GIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVK  248 (286)
Q Consensus       169 ~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~  248 (286)
                      |++.+.+...+..|..++++++.+.+..++... ..+++||+-+++.+.+.+||.+|+..+...+..|+..+..+.....
T Consensus        81 Gt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~-~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~E~~~~~  159 (205)
T d1s96a_          81 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKM-PHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYA  159 (205)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHC-TTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGG
T ss_pred             ccccchHHHHHhcCCceeecCcHHHHHHHHhhh-cccceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999887 4567788888899999999999988889999999999988887778


Q ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263          249 NFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR  282 (286)
Q Consensus       249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~  282 (286)
                      .+|.||+|++  ++.++++|.++|...+.++.++
T Consensus       160 ~fD~vIvNdd--l~~a~~el~~iI~~e~~k~~~q  191 (205)
T d1s96a_         160 EYDYLIVNDD--FDTALTDLKTIIRAERLRMSRQ  191 (205)
T ss_dssp             GSSEEEECSS--HHHHHHHHHHHHHHHHTBHHHH
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHHHHHhhhhhh
Confidence            8999999876  9999999999998877666544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=3.9e-28  Score=195.56  Aligned_cols=178  Identities=42%  Similarity=0.654  Sum_probs=162.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccc--cC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDY--KG  169 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~  169 (286)
                      |++|+|+|||||||||+++.|.+.++.+.+++++|||+|+.|+.+|.+|++++.++|..++..+.|+++..++++.  |+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            8899999999999999999999888888999999999999999999999999999999999999999999888875  48


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCC
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKN  249 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~  249 (286)
                      .....+...+..|..++++++.+.+..++... ..++.||+.+++.+.+.+||.+|+..+.+.|..|++.+..+......
T Consensus        82 ~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~-~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~~~e~~~~~~  160 (182)
T d1znwa1          82 TLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-PEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD  160 (182)
T ss_dssp             EEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-TTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG
T ss_pred             cccchhhhhhhcCCccccccccchhhhhhhcC-cceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhHhc
Confidence            88889999999999999999999999998887 45677888888899999999999888999999999988877777788


Q ss_pred             CcEEEECCCCCHHHHHHHHHHHH
Q 043263          250 FDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       250 ~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      +|.||+|++  +++++++|.++|
T Consensus       161 fD~vI~Ndd--le~a~~~l~~iI  181 (182)
T d1znwa1         161 FDKVVVNRR--LESACAELVSLL  181 (182)
T ss_dssp             SSEEEECSS--HHHHHHHHHHHH
T ss_pred             CCEEEECcC--HHHHHHHHHHHh
Confidence            999998875  999999998876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.2e-27  Score=190.19  Aligned_cols=178  Identities=40%  Similarity=0.605  Sum_probs=160.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      |+|+||||||||||++.|+..++ .+...+++|||+|+.|+.+|.++++++.++|..++.++.|++++.++++.|+.+.+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            89999999999999999987765 67889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh--ccCCCc
Q 043263          174 QIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ--HVKNFD  251 (286)
Q Consensus       174 ~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~--~~~~~d  251 (286)
                      .+...+.+|..++++++.+.+..++......+.+|++-+++.+.+.+||.+|+..+.+.|..|+..+..+..  ....+|
T Consensus        84 ~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~~~~fd  163 (186)
T d1gkya_          84 SVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHD  163 (186)
T ss_dssp             HHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHTTTCSS
T ss_pred             hHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhcCCC
Confidence            999999999999999999999999887766678888888889999999999998899999999988766543  335689


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHH
Q 043263          252 YVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       252 ~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      .||+|++  +++++++|.++|.+
T Consensus       164 ~vI~N~d--le~a~~~l~~iI~~  184 (186)
T d1gkya_         164 KVIVNDD--LDKAYKELKDFIFA  184 (186)
T ss_dssp             EEEECSS--HHHHHHHHHHHHHT
T ss_pred             EEEECcC--HHHHHHHHHHHHHh
Confidence            9998875  99999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.4e-26  Score=184.74  Aligned_cols=182  Identities=35%  Similarity=0.564  Sum_probs=160.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCccHH
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIPKK  173 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      |+|+||||||||||++.|...++ .+..++++|||+++.|+.+|.++++++.+.|..++..+.|+++..++++.|+++.+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            78999999999999999987765 46789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc---cCCC
Q 043263          174 QIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQH---VKNF  250 (286)
Q Consensus       174 ~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~---~~~~  250 (286)
                      .+...+..|..++++.+.+.+..++... ..+++|++.+++.+.+.+||.+|+..+.+.+..|+..+..++..   ...+
T Consensus        83 ~v~~~~~~g~~~~~~~~~~~~~~l~~~~-~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~~~~~~~~f  161 (190)
T d1lvga_          83 AVRAVQAMNRICVLDVDLQGVRSIKKTD-LCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLF  161 (190)
T ss_dssp             HHHHHHHTTCEEEEECCHHHHHHHTTSS-CCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTC
T ss_pred             hhhhhhcCCCceeecchHhhhhhhhhcc-ccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhcCCC
Confidence            9999999999999999988887777655 55678889999999999999999888999999999887776432   2458


Q ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263          251 DYVVVNAEGKLDSAVKLVESVIDAEKAKV  279 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i~~~~~~~  279 (286)
                      |.+|+|++  +++++++|.++|.....+.
T Consensus       162 d~iI~N~d--le~a~~~l~~iI~~~~~k~  188 (190)
T d1lvga_         162 DLVIINDD--LDKAYATLKQALSEEIKKA  188 (190)
T ss_dssp             SEEEECSS--HHHHHHHHHHHTHHHHHHT
T ss_pred             CEEEECcC--HHHHHHHHHHHHHHHHhcc
Confidence            99999876  9999999999998766543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.5e-29  Score=211.38  Aligned_cols=174  Identities=20%  Similarity=0.249  Sum_probs=134.4

Q ss_pred             HHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      |+++||+|+|+.    +|+++++.+++ |+++||+|+||||||||+++|.|+++            |.+|+  ++|.++.
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~   68 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQ-GEVIGIVGRSGSGKSTLTKLIQRFYI------------PENGQVLIDGHDLA   68 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEETT
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcCC------------CCCCEEEECCEEec
Confidence            567899999953    68999999998 99999999999999999999999997            66676  8999998


Q ss_pred             eeCHHHHHHHh---hccchhhhheeccccc----CccHHHHHHH------------Hhc--------CCcEEEEeCHHHH
Q 043263          142 FVSKEEFLQMV---DKNELLEYALVYGDYK----GIPKKQIREY------------MAK--------GYDIVLRVDIQGA  194 (286)
Q Consensus       142 ~~~~~~~~~~i---~~~~~~~~~~~~~~~~----~~~~~~i~~~------------~~~--------g~~~v~~~~~q~v  194 (286)
                      ..+...++..+   .|+.++.+.++..|+.    ....+.+..+            ++.        +...+++|++||+
T Consensus        69 ~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRv  148 (241)
T d2pmka1          69 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI  148 (241)
T ss_dssp             TSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHH
T ss_pred             ccchhhhhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHH
Confidence            88888888764   4444433333333321    1233333322            111        2245778999999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++||+++.+|+++||      ||+.++..+.+.|.+. .+.|...|+|+++.       +..||+|+++++|++
T Consensus       149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~-------~~~~D~i~vl~~G~I  215 (241)
T d2pmka1         149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST-------VKNADRIIVMEKGKI  215 (241)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG-------GTTSSEEEEEETTEE
T ss_pred             hhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHH-------HHhCCEEEEEECCEE
Confidence            999999999999999      8888888888888764 34478888999987       688999999999986

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=3.3e-29  Score=211.01  Aligned_cols=176  Identities=24%  Similarity=0.306  Sum_probs=135.5

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..|+++||+|+|+.    +|+++++.+++ |+++||+||||||||||+++|+|++.            |.+|+  ++|.+
T Consensus        12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~-Ge~iaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~   78 (253)
T d3b60a1          12 GDLEFRNVTFTYPGREVPALRNINLKIPA-GKTVALVGRSGSGKSTIASLITRFYD------------IDEGHILMDGHD   78 (253)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECT-TCEEEEEECTTSSHHHHHHHHTTTTC------------CSEEEEEETTEE
T ss_pred             eEEEEEEEEEEeCCCCCceeeceEEEEcC-CCEEEEECCCCChHHHHHHHHhcccC------------CCccEEEECCcc
Confidence            45999999999974    68999999998 99999999999999999999999997            66776  89999


Q ss_pred             eeeeCHHHHHHHh---hccchhhh-----heecccccCccHHHHHHH------------HhcCCc--------EEEEeCH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEY-----ALVYGDYKGIPKKQIREY------------MAKGYD--------IVLRVDI  191 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~-----~~~~~~~~~~~~~~i~~~------------~~~g~~--------~v~~~~~  191 (286)
                      +...+...++..+   .++..+.+     +..++.....+.+.+.++            ++.|.+        .+++|++
T Consensus        79 i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqk  158 (253)
T d3b60a1          79 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR  158 (253)
T ss_dssp             TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred             cchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHH
Confidence            8888888887754   33333222     222332223344444433            222332        3667899


Q ss_pred             HHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          192 QGARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       192 q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+++||+++.+|+++||      ||+.++..+.+.|.+. .+.|...|+|+++.       +..||+|+++++|++
T Consensus       159 QRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~-------~~~~D~v~vl~~G~I  228 (253)
T d3b60a1         159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST-------IEQADEIVVVEDGII  228 (253)
T ss_dssp             HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG-------TTTCSEEEEEETTEE
T ss_pred             HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH-------HHhCCEEEEEECCEE
Confidence            999999999999999999      8888888888877753 34578888999987       678999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-28  Score=207.59  Aligned_cols=178  Identities=17%  Similarity=0.245  Sum_probs=132.3

Q ss_pred             hhHHHhHhHHHHhcc-----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCC
Q 043263           65 NKIELLRSLEASLGH-----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNG  137 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~-----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g  137 (286)
                      +..|+++||+|+|+.     +|+++++.+++ |++++|+||||||||||+++|.|++.            |.+|+  ++|
T Consensus         9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~-Ge~vaivG~sGsGKSTLl~li~gl~~------------p~~G~I~i~g   75 (251)
T d1jj7a_           9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRP-GEVTALVGPNGSGKSTVAALLQNLYQ------------PTGGQLLLDG   75 (251)
T ss_dssp             CCCEEEEEEEECCTTSTTCCSEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred             cceEEEEEEEEECCCCCCCEeEeceEEEEcC-CCEEEEECCCCCcHHHHHHHHhcccC------------CCcCEEEECC
Confidence            446999999999964     68999999998 99999999999999999999999997            67776  899


Q ss_pred             cceeeeCHHHHHHHh---hccchhhh-----heecccccCccHHHHHH------------HHhcCC--------cEEEEe
Q 043263          138 KDYFFVSKEEFLQMV---DKNELLEY-----ALVYGDYKGIPKKQIRE------------YMAKGY--------DIVLRV  189 (286)
Q Consensus       138 ~~~~~~~~~~~~~~i---~~~~~~~~-----~~~~~~~~~~~~~~i~~------------~~~~g~--------~~v~~~  189 (286)
                      .++...+...++..+   .|...+.+     +..++.........+.+            .++.+.        ..+++|
T Consensus        76 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGG  155 (251)
T d1jj7a_          76 KPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGG  155 (251)
T ss_dssp             EEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHH
T ss_pred             EecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChh
Confidence            999888888877754   34333222     22222111111111111            122222        346678


Q ss_pred             CHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCC
Q 043263          190 DIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGK  260 (286)
Q Consensus       190 ~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~  260 (286)
                      ++||+++||+++.+|+++|+      ||+.++..+.+.|.+   +.+.|...|+|+++.       ++.||+|+++++|+
T Consensus       156 qkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~-------~~~aDrI~vl~~G~  228 (251)
T d1jj7a_         156 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL-------VEQADHILFLEGGA  228 (251)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHH-------HHTCSEEEEEETTE
T ss_pred             HceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHH-------HHhCCEEEEEECCE
Confidence            99999999999999999988      888777777777764   234588889999987       46799999999997


Q ss_pred             HH
Q 043263          261 LD  262 (286)
Q Consensus       261 i~  262 (286)
                      +.
T Consensus       229 iv  230 (251)
T d1jj7a_         229 IR  230 (251)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.93  E-value=3.5e-29  Score=209.46  Aligned_cols=174  Identities=18%  Similarity=0.244  Sum_probs=127.3

Q ss_pred             HHhHhHHHHhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           68 ELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        68 i~~~~v~~~~~~---~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      ++++||+|+|+.   +|+++++.+++ |+++||+||||||||||+++|+|++.            |.+|+  ++|.++..
T Consensus         2 le~knvsf~Y~~~~~vL~~isl~i~~-Ge~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~   68 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQILRDISFEAQP-NSIIAFAGPSGGGKSTIFSLLERFYQ------------PTAGEITIDGQPIDN   68 (242)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECT-TEEEEEECCTTSSHHHHHHHHTTSSC------------CSBSCEEETTEESTT
T ss_pred             EEEEEEEEECCCCCceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHHhhC------------CCCCEEEECCEEecc
Confidence            568899999964   68999999998 99999999999999999999999997            77787  78887765


Q ss_pred             eCHHHHHHHh---hccchhhhheecccc-----cCccHHHHHHH------------HhcCC--------cEEEEeCHHHH
Q 043263          143 VSKEEFLQMV---DKNELLEYALVYGDY-----KGIPKKQIREY------------MAKGY--------DIVLRVDIQGA  194 (286)
Q Consensus       143 ~~~~~~~~~i---~~~~~~~~~~~~~~~-----~~~~~~~i~~~------------~~~g~--------~~v~~~~~q~v  194 (286)
                      .+...++..+   .|+..+...++..|.     .....+.+.++            ++.+.        ..+++||+||+
T Consensus        69 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv  148 (242)
T d1mv5a_          69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL  148 (242)
T ss_dssp             TSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred             ccHHHHHhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHH
Confidence            5544444432   333332222222221     11223322222            11122        23678899999


Q ss_pred             HHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          195 RTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       195 ~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++||+++.+|+++||      ||+.++..+++.|.+. .+.|...++|+++.       +..||+|+++++|++
T Consensus       149 ~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~-------~~~~D~i~vl~~G~i  215 (242)
T d1mv5a_         149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLST-------IVDADKIYFIEKGQI  215 (242)
T ss_dssp             HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHH-------HHHCSEEEEEETTEE
T ss_pred             HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHH-------HHhCCEEEEEECCEE
Confidence            999999999999999      8888888888888764 34578888999987       457999999999975

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.92  E-value=7.2e-29  Score=208.68  Aligned_cols=176  Identities=18%  Similarity=0.231  Sum_probs=135.7

Q ss_pred             hHHHhHhHHHHhcc----cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           66 KIELLRSLEASLGH----AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        66 ~~i~~~~v~~~~~~----~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      ..|+++||+|+|+.    +|+++++.+++ |++++|+|+||||||||+++|.|++.            |.+|+  ++|.+
T Consensus        15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~-Ge~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~   81 (255)
T d2hyda1          15 GRIDIDHVSFQYNDNEAPILKDINLSIEK-GETVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILIDGHN   81 (255)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECT-TCEEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEETTEE
T ss_pred             CEEEEEEEEEEeCCCCCcceeceEEEEcC-CCEEEEECCCCCcHHHHHHHHHhcCC------------ccccccccCCEE
Confidence            45899999999964    68999999998 99999999999999999999999997            66666  79999


Q ss_pred             eeeeCHHHHHHHh---hccchhhhheecccc-c---CccHHHHHHH------------HhcCCcE--------EEEeCHH
Q 043263          140 YFFVSKEEFLQMV---DKNELLEYALVYGDY-K---GIPKKQIREY------------MAKGYDI--------VLRVDIQ  192 (286)
Q Consensus       140 ~~~~~~~~~~~~i---~~~~~~~~~~~~~~~-~---~~~~~~i~~~------------~~~g~~~--------v~~~~~q  192 (286)
                      +...+...++..+   .|..++.+.++..|+ +   ....+++.++            ++.|.++        +++|++|
T Consensus        82 i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~Q  161 (255)
T d2hyda1          82 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ  161 (255)
T ss_dssp             GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred             cccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHH
Confidence            9888888888765   444433333333321 1   1233343333            2233333        5578999


Q ss_pred             HHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          193 GARTLRRILGDSAVFVF------LAAESEMALVERLVER-KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       193 ~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r-~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++||+++.+|+++||      ||+.++..+.+.|.+. .+.|...|+|+++.       +..||+|+++++|++
T Consensus       162 Ri~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~-------~~~~D~ii~l~~G~i  230 (255)
T d2hyda1         162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST-------ITHADKIVVIENGHI  230 (255)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-------TTTCSEEEEEETTEE
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------HHhCCEEEEEECCEE
Confidence            99999999999999999      8888888888888764 34477788999987       688999999999976

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-24  Score=170.74  Aligned_cols=170  Identities=26%  Similarity=0.459  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      +.|+|+||||||||||++.|.+..+ .+..++.+|||+|+.|+.+|.+|+|++.++|..++..+.|++++.+++++||++
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt~   83 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK   83 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceeee
Confidence            5799999999999999999987665 688899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HhhccCC
Q 043263          172 KKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATARE--EVQHVKN  249 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~--~~~~~~~  249 (286)
                      .+.+...+..|..++++++.|.+..++... ..+++||+.+|+..        +.......+ .|+.....  +......
T Consensus        84 ~~~i~~~~~~g~~~ildid~~g~~~lk~~~-~~~~~IfI~pps~~--------~~~~~~~~~-~r~~~~~~~~e~~~~~~  153 (178)
T d1kgda_          84 LETIRKIHEQGLIAILDVEPQALKVLRTAE-FAPFVVFIAAPTIT--------PGLNEDESL-QRLQKESDILQRTYAHY  153 (178)
T ss_dssp             HHHHHHHHHTTCEEEEECCGGGHHHHSSTT-TCEEEEEEECCSCC--------TTSCCSHHH-HHHHHHHHHHHHHHGGG
T ss_pred             eecccchhccCceEEeccchhhhhhhhccc-cccceeeEeccccc--------cccchHHHH-HHHHHHHHHHHHHhhcC
Confidence            999999999999999999998888776654 56788889887622        111111222 22221111  1222457


Q ss_pred             CcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          250 FDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       250 ~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      +|.+|+|++  +++++++|.++++.
T Consensus       154 fD~vIvNdd--le~a~~el~~iI~~  176 (178)
T d1kgda_         154 FDLTIINNE--IDETIRHLEEAVEL  176 (178)
T ss_dssp             CSEEEECSS--HHHHHHHHHHHHHH
T ss_pred             CCEEEECCC--HHHHHHHHHHHHHH
Confidence            999999886  99999999998863

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=3e-27  Score=195.97  Aligned_cols=175  Identities=18%  Similarity=0.218  Sum_probs=124.6

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+++||+++|+.  +|+++++.+++ |++++|+|||||||||++++|+|++.            |++|+  ++|+++...
T Consensus         7 I~v~nlsk~yg~~~al~~vsl~v~~-Ge~~~liGpsGaGKSTLl~~i~Gl~~------------p~sG~I~i~g~~i~~~   73 (239)
T d1v43a3           7 VKLENLTKRFGNFTAVNKLNLTIKD-GEFLVLLGPSGCGKTTTLRMIAGLEE------------PTEGRIYFGDRDVTYL   73 (239)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTS
T ss_pred             EEEEEEEEEECCEEEEcceeEEECC-CCEEEEECCCCChHHHHHHHHHcCCC------------CCCCEEEEcceecccC
Confidence            788999999987  79999999998 99999999999999999999999987            66665  677665433


Q ss_pred             CHHH--HH------HHhhccchhhhheecccccCccHHHHHHH-------------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEE--FL------QMVDKNELLEYALVYGDYKGIPKKQIREY-------------MAKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~--~~------~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-------------~~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      +...  +.      .++......++..+....++.+.+++++.             ..+....+++|++||+++||+++.
T Consensus        74 ~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          74 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             CGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             CcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence            3221  00      11112222333333334445555443332             233345678999999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++|+      ||+.+...+++-+.+   ..+.|...++|+++.+      ...||+|+++++|++
T Consensus       154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a------~~~~dri~vm~~G~i  215 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA------MTMGDRIAVMNRGQL  215 (239)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            8888888      777766666665544   3355788889999886      478999999999965

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7.8e-27  Score=192.83  Aligned_cols=175  Identities=17%  Similarity=0.197  Sum_probs=106.1

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+++||+++|+.  +|+++++.+++ |++++|+||||||||||+++|+|++.            |++|+  ++|+++...
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~-Gei~~liGpsGsGKSTLl~~i~Gl~~------------p~sG~I~i~g~~i~~~   67 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEKRMNDT   67 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEESSSCCTTS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCCEEEECCEECCCC
Confidence            467899999987  79999999998 99999999999999999999999987            55555  666665433


Q ss_pred             CHHH--HHHHhhccchhhhheeccc------ccCccHHH----HHHH---------HhcCCcEEEEeCHHHHHHHHHHhC
Q 043263          144 SKEE--FLQMVDKNELLEYALVYGD------YKGIPKKQ----IREY---------MAKGYDIVLRVDIQGARTLRRILG  202 (286)
Q Consensus       144 ~~~~--~~~~i~~~~~~~~~~~~~~------~~~~~~~~----i~~~---------~~~g~~~v~~~~~q~v~iaral~~  202 (286)
                      +...  +....++..+..+..+..|      .++.+.++    +.+.         .......+++|++||+++||+++.
T Consensus        68 ~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~  147 (232)
T d2awna2          68 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  147 (232)
T ss_dssp             CGGGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHT
T ss_pred             chhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            3211  0011122222222222222      23333222    2222         233345688999999999999998


Q ss_pred             CCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 DSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 ~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +|+++++      ||+.+...+++.|.+   ..+.|...++|+++.+      ...||+|+++++|++
T Consensus       148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a------~~~~dri~vm~~G~i  209 (232)
T d2awna2         148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA------MTLADKIVVLDAGRV  209 (232)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            8888888      777666666665543   3455778889999886      477999999999865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=6.8e-27  Score=193.11  Aligned_cols=174  Identities=12%  Similarity=0.172  Sum_probs=124.1

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      |+++||+++|+.      +|+++++.+.+ |++++|+||||||||||+++|+|++.            |++|+  ++|.+
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~-Ge~~~iiG~sGsGKSTLl~~i~gl~~------------p~sG~I~~~g~~   68 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKE-GEFVSIMGPSGSGKSTMLNIIGCLDK------------PTEGEVYIDNIK   68 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcC-CCEEEEECCCCCCcchhhHhccCCCC------------CCcceeEECCEE
Confidence            467899999964      58999999998 99999999999999999999999987            77777  88998


Q ss_pred             eeeeCHHHHHHH----h----hccchhhhheeccc---------ccCccHHH----HHHHHh----------cCCcEEEE
Q 043263          140 YFFVSKEEFLQM----V----DKNELLEYALVYGD---------YKGIPKKQ----IREYMA----------KGYDIVLR  188 (286)
Q Consensus       140 ~~~~~~~~~~~~----i----~~~~~~~~~~~~~~---------~~~~~~~~----i~~~~~----------~g~~~v~~  188 (286)
                      +...+..++...    +    ++..+..+..+..+         ......++    +.+.+.          .....+++
T Consensus        69 i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSG  148 (230)
T d1l2ta_          69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG  148 (230)
T ss_dssp             CTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH
T ss_pred             cCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCH
Confidence            877776655432    1    22222222222221         11222222    222221          11234788


Q ss_pred             eCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCC
Q 043263          189 VDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEG  259 (286)
Q Consensus       189 ~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G  259 (286)
                      |++||+++||+++.+|+++|+      ||+.+...+++-|.+   ..+.|...++|+++.       .+.||+|+++++|
T Consensus       149 GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~-------a~~~drv~~m~~G  221 (230)
T d1l2ta_         149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-------ARFGERIIYLKDG  221 (230)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHH-------HTTSSEEEEEETT
T ss_pred             HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHH-------HHhCCEEEEEECC
Confidence            999999999999988888877      777667777776654   234577888998876       3689999999999


Q ss_pred             CH
Q 043263          260 KL  261 (286)
Q Consensus       260 ~i  261 (286)
                      ++
T Consensus       222 ~I  223 (230)
T d1l2ta_         222 EV  223 (230)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.90  E-value=5.1e-27  Score=193.38  Aligned_cols=174  Identities=18%  Similarity=0.189  Sum_probs=124.3

Q ss_pred             HHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeC
Q 043263           68 ELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVS  144 (286)
Q Consensus        68 i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~  144 (286)
                      |+++||+++|+. +|+++++.+.+ |++++|+|||||||||++++|+|++.            |++|+  ++|+++...+
T Consensus         2 i~v~nlsk~y~~~aL~~vs~~i~~-Ge~~~liGpsGaGKSTll~~l~Gl~~------------p~sG~I~~~G~~i~~~~   68 (229)
T d3d31a2           2 IEIESLSRKWKNFSLDNLSLKVES-GEYFVILGPTGAGKTLFLELIAGFHV------------PDSGRILLDGKDVTDLS   68 (229)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECT-TCEEEEECCCTHHHHHHHHHHHTSSC------------CSEEEEEETTEECTTSC
T ss_pred             EEEEEEEEEeCCEEEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHhcCcC------------CCCCEEEEccEeccccc
Confidence            567899999987 78999999998 99999999999999999999999987            67776  7888876555


Q ss_pred             HHHHHH---Hhhccchhhhheeccc------ccCc-cHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCc
Q 043263          145 KEEFLQ---MVDKNELLEYALVYGD------YKGI-PKKQIREYM---------AKGYDIVLRVDIQGARTLRRILGDSA  205 (286)
Q Consensus       145 ~~~~~~---~i~~~~~~~~~~~~~~------~~~~-~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~  205 (286)
                      ... +.   ..++..+..+..+..|      .++. ..+.+.+++         .+....+++|++||+++||+++.+|.
T Consensus        69 ~~~-r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  147 (229)
T d3d31a2          69 PEK-HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK  147 (229)
T ss_dssp             HHH-HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred             hhH-hcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCC
Confidence            432 11   1122222222222222      1222 223333332         22334577899999999999998888


Q ss_pred             EEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          206 VFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       206 ~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ++++      ||+.+...+++.+.+   ..+.|...++|+++.+      ...||+|+++++|++
T Consensus       148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~------~~~~drv~vm~~G~i  206 (229)
T d3d31a2         148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA------RIMADRIAVVMDGKL  206 (229)
T ss_dssp             EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHCSEEEEESSSCE
T ss_pred             ceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            8888      777666666665543   3455778889999886      467999999999975

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.2e-27  Score=193.36  Aligned_cols=175  Identities=20%  Similarity=0.278  Sum_probs=126.2

Q ss_pred             HHhHhHHHHhcc------cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcc
Q 043263           68 ELLRSLEASLGH------AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKD  139 (286)
Q Consensus        68 i~~~~v~~~~~~------~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~  139 (286)
                      |+++||+++|+.      +|+++++.+.+ |++++|+||||||||||+++|+|+..            |++|+  ++|++
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~-Ge~~~iiG~sGsGKSTLl~~i~Gl~~------------p~sG~I~~~g~~   68 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLER------------PTEGSVLVDGQE   68 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECS-SCEEEEEESTTSSHHHHHHHHTTSSC------------CSEEEEEETTEE
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHcCCcc------------ccCCceEEcCeE
Confidence            467899999964      58999999998 99999999999999999999999987            77777  88998


Q ss_pred             eeeeCHHHHHHH---h----hccchhhhheeccc------ccCccHH----HHHHHH---------hcCCcEEEEeCHHH
Q 043263          140 YFFVSKEEFLQM---V----DKNELLEYALVYGD------YKGIPKK----QIREYM---------AKGYDIVLRVDIQG  193 (286)
Q Consensus       140 ~~~~~~~~~~~~---i----~~~~~~~~~~~~~~------~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~  193 (286)
                      +...+..++...   +    ++..++.+..+..|      .++.+.+    .+.+++         ......+++|++||
T Consensus        69 i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QR  148 (240)
T d3dhwc1          69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR  148 (240)
T ss_dssp             ECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHH
T ss_pred             eeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence            876666554432   2    22222222222222      2233322    233332         22234677899999


Q ss_pred             HHHHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          194 ARTLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       194 v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +++||+++.+|+++|+      ||+.+...+++-|.+   ..+.|...++|++..+      ...||+|+++++|++
T Consensus       149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~------~~~~dri~vl~~G~i  219 (240)
T d3dhwc1         149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV------KRICDCVAVISNGEL  219 (240)
T ss_dssp             HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            9999999988888888      777767777665553   3355788889999886      468999999999975

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.89  E-value=2.1e-27  Score=197.31  Aligned_cols=175  Identities=18%  Similarity=0.194  Sum_probs=123.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |+++||++.|+.  +++++++.+.+ |++++|+|||||||||++++|+|++.            |++|+  ++|.++...
T Consensus         4 i~v~nl~k~yg~~~al~~vsl~i~~-Ge~~~liG~sGaGKSTll~~i~gl~~------------p~sG~I~~~g~~i~~~   70 (240)
T d1g2912           4 VRLVDVWKVFGEVTAVREMSLEVKD-GEFMILLGPSGCGKTTTLRMIAGLEE------------PSRGQIYIGDKLVADP   70 (240)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTEEEEEG
T ss_pred             EEEEeEEEEECCEEEEcceeeEEcC-CCEEEEECCCCChHHHHHHHHhcCCC------------CCCCEEEECCEEeccc
Confidence            678999999987  79999999998 99999999999999999999999987            66665  677766543


Q ss_pred             CHHHH----HH----Hhhccchhhhheecc------cccCccHHHHHH----HH---------hcCCcEEEEeCHHHHHH
Q 043263          144 SKEEF----LQ----MVDKNELLEYALVYG------DYKGIPKKQIRE----YM---------AKGYDIVLRVDIQGART  196 (286)
Q Consensus       144 ~~~~~----~~----~i~~~~~~~~~~~~~------~~~~~~~~~i~~----~~---------~~g~~~v~~~~~q~v~i  196 (286)
                      +....    +.    ..++..+.++.++..      ..++.+.+++++    .+         .+....+++|++||+++
T Consensus        71 ~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I  150 (240)
T d1g2912          71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (240)
T ss_dssp             GGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             chhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence            22111    11    112222222222222      234444443332    21         22234577899999999


Q ss_pred             HHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          197 LRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       197 aral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ||+++.+|+++|+      ||+.+...+++.|.+   ..+.|...++|+++.+      ...||+|+++++|++
T Consensus       151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~------~~~~drv~vm~~G~i  218 (240)
T d1g2912         151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA------MTMGDRIAVMNRGVL  218 (240)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH------HHhCCEEEEEECCEE
Confidence            9999988888888      777666666665543   3355888889999886      477999999999865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=4.6e-27  Score=195.04  Aligned_cols=175  Identities=19%  Similarity=0.110  Sum_probs=123.6

Q ss_pred             HHhHhHHHHhc--c--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           68 ELLRSLEASLG--H--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        68 i~~~~v~~~~~--~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      |+++||++.|+  .  +|+++++.+.+ |++++|+|||||||||++++|+|++.            |++|+  ++|+++.
T Consensus         4 i~v~nlsk~y~~g~~~aL~~vsl~i~~-Ge~~~iiG~sGsGKSTll~~i~gl~~------------p~~G~I~~~g~~i~   70 (242)
T d1oxxk2           4 IIVKNVSKVFKKGKVVALDNVNINIEN-GERFGILGPSGAGKTTFMRIIAGLDV------------PSTGELYFDDRLVA   70 (242)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECT-TCEEEEECSCHHHHHHHHHHHHTSSC------------CSEEEEEETTEEEE
T ss_pred             EEEEeEEEEECCCCEEEEeceEEEECC-CCEEEEECCCCCcHHHHHHHHHcCcC------------CCCceEEECCEEee
Confidence            67889999994  3  68999999998 99999999999999999999999987            66666  6777765


Q ss_pred             eeCHHH---HHH----Hhhccch------hhhheecccccCccHHHHH----HHH---------hcCCcEEEEeCHHHHH
Q 043263          142 FVSKEE---FLQ----MVDKNEL------LEYALVYGDYKGIPKKQIR----EYM---------AKGYDIVLRVDIQGAR  195 (286)
Q Consensus       142 ~~~~~~---~~~----~i~~~~~------~~~~~~~~~~~~~~~~~i~----~~~---------~~g~~~v~~~~~q~v~  195 (286)
                      ..+...   .+.    .+++..+      .++..+....++.+.++++    +.+         ......+++|++||++
T Consensus        71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRva  150 (242)
T d1oxxk2          71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA  150 (242)
T ss_dssp             ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred             cCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHH
Confidence            432111   111    1122222      2222222223445544332    222         2223457789999999


Q ss_pred             HHHHHhCCCcEEEE------EecCCHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          196 TLRRILGDSAVFVF------LAAESEMALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       196 iaral~~~~~~~Il------ld~~~~~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||+++.+|.++|+      ||+.+...+++.+.+   ..+.|...++|+++.+      ...||+|+++++|++
T Consensus       151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~------~~~~dri~vm~~G~i  219 (242)
T d1oxxk2         151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI------FAIADRVGVLVKGKL  219 (242)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHH------HHhCCEEEEEECCEE
Confidence            99999988888888      888877777765543   3355778889998876      478999999999965

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.88  E-value=5.3e-26  Score=189.78  Aligned_cols=177  Identities=16%  Similarity=0.166  Sum_probs=124.3

Q ss_pred             hHHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCccee
Q 043263           66 KIELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYF  141 (286)
Q Consensus        66 ~~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~  141 (286)
                      ..++++||++.|+.  +|+++++.+++ |++++|+|||||||||++++|+|++.            |++|+  ++|+++.
T Consensus         5 ~~Lev~~l~k~yg~~~al~~vs~~i~~-Gei~~liGpnGaGKSTl~~~i~Gl~~------------p~~G~I~~~G~~i~   71 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIHAIKGIDLKVPR-GQIVTLIGANGAGKTTTLSAIAGLVR------------AQKGKIIFNGQDIT   71 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECT
T ss_pred             eEEEEeeEEEEECCEEEEeeeeEEECC-CCEEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEecccccc
Confidence            35788999999997  79999999998 99999999999999999999999987            66776  7888887


Q ss_pred             eeCHHHHHHH-h---hc-cchhhhheeccc------ccCc---cHHHHHHH------H----hcCCcEEEEeCHHHHHHH
Q 043263          142 FVSKEEFLQM-V---DK-NELLEYALVYGD------YKGI---PKKQIREY------M----AKGYDIVLRVDIQGARTL  197 (286)
Q Consensus       142 ~~~~~~~~~~-i---~~-~~~~~~~~~~~~------~~~~---~~~~i~~~------~----~~g~~~v~~~~~q~v~ia  197 (286)
                      ..+....... +   ++ ..+..+..+..+      .+..   ..+.+.+.      +    ......+++|++|++.+|
T Consensus        72 ~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iA  151 (240)
T d1ji0a_          72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG  151 (240)
T ss_dssp             TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred             cccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHH
Confidence            6665554332 1   22 122222222211      1110   11112222      1    112245788999999999


Q ss_pred             HHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          198 RRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       198 ral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      |+++.+|+++|+      ||+.+...+++.+.+.  .+.+...++|+++..      ...||+|+++++|++
T Consensus       152 raL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~------~~~~drv~vl~~G~i  217 (240)
T d1ji0a_         152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA------LKVAHYGYVLETGQI  217 (240)
T ss_dssp             HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999988888877      6666666666655542  245777889998876      478999999999974

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=7.7e-26  Score=188.43  Aligned_cols=174  Identities=13%  Similarity=0.163  Sum_probs=125.9

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      |.++||+++|+.  +|+++++.+.+ |+++||+||||||||||+++|+|++.            |++|+  ++|+++.. 
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~-Gei~glvG~nGaGKSTLl~~l~G~~~------------p~~G~i~i~G~~i~~-   68 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEE-GEIFGLIGPNGAGKTTTLRIISTLIK------------PSSGIVTVFGKNVVE-   68 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEETTT-
T ss_pred             EEEEeEEEEECCEEEEccceeEEcC-CCEEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEECcEeccc-
Confidence            678999999997  89999999998 99999999999999999999999987            67776  67877643 


Q ss_pred             CHHHHHHHh----hccch------hhhheecccccCccHHHHHHH----H---------hcCCcEEEEeCHHHHHHHHHH
Q 043263          144 SKEEFLQMV----DKNEL------LEYALVYGDYKGIPKKQIREY----M---------AKGYDIVLRVDIQGARTLRRI  200 (286)
Q Consensus       144 ~~~~~~~~i----~~~~~------~~~~~~~~~~~~~~~~~i~~~----~---------~~g~~~v~~~~~q~v~iaral  200 (286)
                      .....+..+    +...+      .++..++..+++....++.+.    +         .+....+++|++|++.+|+++
T Consensus        69 ~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al  148 (238)
T d1vpla_          69 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL  148 (238)
T ss_dssp             CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred             ChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHH
Confidence            333344332    22212      333333333444444433222    1         122345678899999999999


Q ss_pred             hCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          201 LGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       201 ~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +.+|+++|+      ||+.+...+++-+.+.  .+.|...++|+++..      ...||+|+++++|++
T Consensus       149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~------~~~~drv~vl~~G~i  211 (238)
T d1vpla_         149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV------EFLCDRIALIHNGTI  211 (238)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH------TTTCSEEEEEETTEE
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            999998888      7777677776666542  234667779999986      578999999998864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=8.6e-26  Score=190.19  Aligned_cols=176  Identities=18%  Similarity=0.177  Sum_probs=119.1

Q ss_pred             HHHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceee
Q 043263           67 IELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFF  142 (286)
Q Consensus        67 ~i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~  142 (286)
                      +++++||+++|+.  +|+++++.+.+ |+++||+||||||||||+++|+|+++            |++|+  ++|+++..
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~-GEi~~iiG~sGsGKSTLl~~i~Gl~~------------p~~G~I~~~G~~i~~   68 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARA-GDVISIIGSSGSGKSTFLRCINFLEK------------PSEGAIIVNGQNINL   68 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECCE
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcC-CCEEEEECCCCCcHHHHHHHHHcCcc------------CCCCCEEECCEEecc
Confidence            3678999999987  79999999998 99999999999999999999999987            55665  67776543


Q ss_pred             e----------CHH---HHHHHh----hccchhhhheeccc-------ccCccHHH----HHHH---------H-hcCCc
Q 043263          143 V----------SKE---EFLQMV----DKNELLEYALVYGD-------YKGIPKKQ----IREY---------M-AKGYD  184 (286)
Q Consensus       143 ~----------~~~---~~~~~i----~~~~~~~~~~~~~~-------~~~~~~~~----i~~~---------~-~~g~~  184 (286)
                      .          ...   ..+..+    ++..+..+..+..+       ..+.+..+    +.++         . .+-..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~  148 (258)
T d1b0ua_          69 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV  148 (258)
T ss_dssp             EECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred             CCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcc
Confidence            2          111   122211    22222111111111       12222222    1111         1 22235


Q ss_pred             EEEEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEEC
Q 043263          185 IVLRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVN  256 (286)
Q Consensus       185 ~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~  256 (286)
                      .+++|+.||+.+||+++.+|+++|+      ||+.+...+.+.|.+.  .+.|...++|++..+      ...||+|+++
T Consensus       149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~------~~~adri~vm  222 (258)
T d1b0ua_         149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA------RHVSSHVIFL  222 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH------HHHCSEEEEE
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHH------HHhCCEEEEE
Confidence            5788999999999999988887777      6666566665555432  245778889999886      4789999999


Q ss_pred             CCCCH
Q 043263          257 AEGKL  261 (286)
Q Consensus       257 ~~G~i  261 (286)
                      ++|++
T Consensus       223 ~~G~i  227 (258)
T d1b0ua_         223 HQGKI  227 (258)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            99975

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.87  E-value=1.4e-25  Score=188.91  Aligned_cols=175  Identities=15%  Similarity=0.162  Sum_probs=122.4

Q ss_pred             HHhHhHHHHhcc--cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           68 ELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        68 i~~~~v~~~~~~--~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      ++++||+++|+.  +|+++++.+.+ |+++||+||||||||||+++|+|++.            |++|+  ++|+++...
T Consensus         5 L~v~nlsk~yg~~~aL~~vs~~v~~-Gei~~liG~nGaGKSTLl~~i~Gl~~------------p~~G~I~~~g~~i~~~   71 (254)
T d1g6ha_           5 LRTENIVKYFGEFKALDGVSISVNK-GDVTLIIGPNGSGKSTLINVITGFLK------------ADEGRVYFENKDITNK   71 (254)
T ss_dssp             EEEEEEEEEETTEEEEEEECCEEET-TCEEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTEECTTC
T ss_pred             EEEEEEEEEECCeEEEcceEEEECC-CCEEEEECCCCCcHHHHHHHHHCCCc------------CCCcEEEECCEeccch
Confidence            678999999987  79999999998 99999999999999999999999987            67776  789888777


Q ss_pred             CHHHHHHH-h---hc-cchhhhheecccc-------------------cCcc-H---HHHHHHHh---------cCCcEE
Q 043263          144 SKEEFLQM-V---DK-NELLEYALVYGDY-------------------KGIP-K---KQIREYMA---------KGYDIV  186 (286)
Q Consensus       144 ~~~~~~~~-i---~~-~~~~~~~~~~~~~-------------------~~~~-~---~~i~~~~~---------~g~~~v  186 (286)
                      ++.+.... +   .| ..++.+..+..|+                   .... .   +.+.+.++         .....+
T Consensus        72 ~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  151 (254)
T d1g6ha_          72 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  151 (254)
T ss_dssp             CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             hHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhC
Confidence            76665443 1   22 2222221111110                   0011 1   11222221         123456


Q ss_pred             EEeCHHHHHHHHHHhCCCcEEEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCC
Q 043263          187 LRVDIQGARTLRRILGDSAVFVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAE  258 (286)
Q Consensus       187 ~~~~~q~v~iaral~~~~~~~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~  258 (286)
                      ++|++|++.+||+++.+|+++|+      ||+.....+.+.|.+.  .+.+...++|+++..      ...||+|+++++
T Consensus       152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~------~~~~Drv~vm~~  225 (254)
T d1g6ha_         152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV------LNYIDHLYVMFN  225 (254)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT------GGGCSEEEEEET
T ss_pred             CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH------HHhCCEEEEEeC
Confidence            78999999999999988887766      5555566666655432  234677789988875      478999999999


Q ss_pred             CCH
Q 043263          259 GKL  261 (286)
Q Consensus       259 G~i  261 (286)
                      |++
T Consensus       226 G~i  228 (254)
T d1g6ha_         226 GQI  228 (254)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            975

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.4e-20  Score=152.74  Aligned_cols=179  Identities=22%  Similarity=0.330  Sum_probs=150.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC-cceeeeeecccCCCCCCcCCcceeee-CHHHHHHHhhccchhhhheecccccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD-SLHFVVTATSRPMRPGEVNGKDYFFV-SKEEFLQMVDKNELLEYALVYGDYKG  169 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~i~~~~r~~~~G~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (286)
                      ...|+|+||   ||+|+.+.|...++ .+..++++|||+|+.|+.+|.+|+|+ +.+.|..++.++.|+++..+++++||
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~YG   85 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG   85 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCccc
Confidence            355889988   59999999998776 57899999999999999999999998 67889999999999999999999999


Q ss_pred             ccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HhhccC
Q 043263          170 IPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATARE-EVQHVK  248 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~-~~~~~~  248 (286)
                      ++.+.+...+..|..++++++.+.+..++... ..+++||+.|++.+.+. ++.+|  .+...+..++..+.. +.+...
T Consensus        86 t~~~~i~~~~~~gk~~lldid~~g~~~lk~~~-~~~i~IfI~pps~e~l~-~l~kr--~~~~~i~~r~~~~~~~e~~~~~  161 (199)
T d1kjwa2          86 TSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVL-EINKR--ITEEQARKAFDRATKLEQEFTE  161 (199)
T ss_dssp             EEHHHHHHHHHTTCEEEECCCTTHHHHHHHTT-CCCEEEEECCSSHHHHH-HHCTT--SCHHHHHHHHHHHHHHHHHHGG
T ss_pred             eeeeEEEehhcCCCcccccccchHHhhhhhhc-cceeEEeeccccHHHHH-hhhcc--ccHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999998888765 56789999999887774 44443  367777777766543 334346


Q ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHHHHhcc
Q 043263          249 NFDYVVVNAEGKLDSAVKLVESVIDAEKAKV  279 (286)
Q Consensus       249 ~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~  279 (286)
                      .+|.+|+|++  +++++++|.++|+.++.+.
T Consensus       162 ~fd~vI~Ndd--le~a~~~l~~iI~~~~~~~  190 (199)
T d1kjwa2         162 CFSAIVEGDS--FEEIYHKVKRVIEDLSGPY  190 (199)
T ss_dssp             GCSEEECCSS--HHHHHHHHHHHHHHHSCSE
T ss_pred             cCCEEEECcC--HHHHHHHHHHHHHHhcCCC
Confidence            6999998775  9999999999999876543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.1e-24  Score=184.06  Aligned_cols=174  Identities=13%  Similarity=0.165  Sum_probs=109.3

Q ss_pred             hhHHHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeC
Q 043263           65 NKIELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVS  144 (286)
Q Consensus        65 ~~~i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~  144 (286)
                      ...+.++++++.+..+|+++++.+++ |+++||+||||||||||+++|+|++....+.+.          ++|. +.+++
T Consensus        36 ~~~i~~~~~~~~g~pvL~~isl~i~~-Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~----------~~g~-i~~v~  103 (281)
T d1r0wa_          36 ENNVSFSHLCLVGNPVLKNINLNIEK-GEMLAITGSTGSGKTSLLMLILGELEASEGIIK----------HSGR-VSFCS  103 (281)
T ss_dssp             ----CHHHHHHTTCEEEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE----------CCSC-EEEEC
T ss_pred             CCcEEEEEcCCCCCeEEeCeEEEEcC-CCEEEEECCCCChHHHHHHHHhCCCcCCCcEEE----------ECCE-EEEEe
Confidence            34578888887665589999999998 999999999999999999999999974333333          4443 22222


Q ss_pred             HHHHHHHhhccchhhhheeccccc-CccHHHHHH---------HHhcCCc--------EEEEeCHHHHHHHHHHhCCCcE
Q 043263          145 KEEFLQMVDKNELLEYALVYGDYK-GIPKKQIRE---------YMAKGYD--------IVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~i~~---------~~~~g~~--------~v~~~~~q~v~iaral~~~~~~  206 (286)
                      +..   .+..+.+.++. .++..+ ......+.+         .++.+..        .+++|++||+++||+++.+|++
T Consensus       104 Q~~---~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i  179 (281)
T d1r0wa_         104 QFS---WIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL  179 (281)
T ss_dssp             SSC---CCCSEEHHHHH-TTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred             ccc---cccCceeeccc-cccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc
Confidence            110   01111222222 111110 000001000         0122222        3567899999999999988888


Q ss_pred             EEE------EecCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          207 FVF------LAAESEMALVERLVER--KTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~~r--~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      +||      ||+.++..+++.+...  .+.|...++|+++.       ++.||+|+++++|++
T Consensus       180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~-------l~~aDrI~vl~~G~i  235 (281)
T d1r0wa_         180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH-------LRKADKILILHQGSS  235 (281)
T ss_dssp             EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHH-------HHTCSEEEEEETTEE
T ss_pred             hhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHH-------HHhCCEEEEEECCEE
Confidence            877      6665566666654332  34477778999877       468999999999975

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=4.7e-23  Score=170.34  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCHHH--HHHHhhccchh
Q 043263           83 SNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSKEE--FLQMVDKNELL  158 (286)
Q Consensus        83 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~~~--~~~~i~~~~~~  158 (286)
                      ++++.+.  +++++|+|||||||||++++|+|++.            |++|+  ++|.++...+...  +....++..+.
T Consensus        17 ~vs~~~~--~e~~~liGpnGaGKSTll~~i~Gl~~------------p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~   82 (240)
T d2onka1          17 NVDFEMG--RDYCVLLGPTGAGKSVFLELIAGIVK------------PDRGEVRLNGADITPLPPERRGIGFVPQDYALF   82 (240)
T ss_dssp             EEEEEEC--SSEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred             EEEEEeC--CEEEEEECCCCChHHHHHHHHHcCCC------------CCceEEEECCEECCcCCHHHcCceeeccchhhc
Confidence            4555552  57999999999999999999999987            55665  6676665433221  11111222222


Q ss_pred             hhheeccc----ccCccHH----HHHHHH---------hcCCcEEEEeCHHHHHHHHHHhCCCcEEEE------EecCCH
Q 043263          159 EYALVYGD----YKGIPKK----QIREYM---------AKGYDIVLRVDIQGARTLRRILGDSAVFVF------LAAESE  215 (286)
Q Consensus       159 ~~~~~~~~----~~~~~~~----~i~~~~---------~~g~~~v~~~~~q~v~iaral~~~~~~~Il------ld~~~~  215 (286)
                      .+.+++.|    ++.....    .+.+++         ......+++|++||+++||+++.+|.++++      ||+.+.
T Consensus        83 ~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~  162 (240)
T d2onka1          83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK  162 (240)
T ss_dssp             TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred             ccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHH
Confidence            22222222    1222322    233332         222345778999999999999988888888      676666


Q ss_pred             HHHHHHHHH---hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          216 MALVERLVE---RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       216 ~~l~~rl~~---r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                      ..+++.+.+   ..+.+...++|.++.+      ...||+|+++++|++
T Consensus       163 ~~i~~~i~~l~~~~g~tvi~vtHd~~~~------~~~adri~vm~~G~i  205 (240)
T d2onka1         163 GVLMEELRFVQREFDVPILHVTHDLIEA------AMLADEVAVMLNGRI  205 (240)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCHHHH------HHHCSEEEEEETTEE
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHHHH------HHhCCEEEEEECCEE
Confidence            666665543   3355788889998886      478999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.5e-22  Score=167.95  Aligned_cols=172  Identities=13%  Similarity=0.119  Sum_probs=111.3

Q ss_pred             HHhHhHHHHhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeeeCH
Q 043263           68 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFVSK  145 (286)
Q Consensus        68 i~~~~v~~~~~~~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~~~  145 (286)
                      ++++||+++|.  +.++++.+.+ |+++||+|||||||||++++|+|+.             |.+|+  ++|+++...+.
T Consensus         4 l~~~dv~~~~~--l~~isl~I~~-Gei~~iiG~nGaGKSTLl~~l~Gl~-------------~~~G~I~~~g~~i~~~~~   67 (231)
T d1l7vc_           4 MQLQDVAESTR--LGPLSGEVRA-GEILHLVGPNGAGKSTLLARMAGMT-------------SGKGSIQFAGQPLEAWSA   67 (231)
T ss_dssp             EEEEEECCTTT--SCSEEEEEET-TCEEECBCCTTSSHHHHHHHHHTSC-------------CCSSEEEESSSBGGGSCH
T ss_pred             EEEECcccCce--ecCEEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCC-------------CCceEEEECCEECCcCCH
Confidence            45667766654  8889999998 9999999999999999999999975             45566  68888776666


Q ss_pred             HHHHHHh---hccch------hhhheecccccCccHHHHHHHH---------hcCCcEEEEeCHHHHHHHHHHhC-----
Q 043263          146 EEFLQMV---DKNEL------LEYALVYGDYKGIPKKQIREYM---------AKGYDIVLRVDIQGARTLRRILG-----  202 (286)
Q Consensus       146 ~~~~~~i---~~~~~------~~~~~~~~~~~~~~~~~i~~~~---------~~g~~~v~~~~~q~v~iaral~~-----  202 (286)
                      ..+....   .+...      +.+............+.+.+.+         .+....+++|++||+.+|++++.     
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~  147 (231)
T d1l7vc_          68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA  147 (231)
T ss_dssp             HHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCccc
Confidence            6554432   11110      0111111111112233333332         12224577899999999999974     


Q ss_pred             --CCcEEEE------EecCCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCH
Q 043263          203 --DSAVFVF------LAAESEMALVERLVE--RKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKL  261 (286)
Q Consensus       203 --~~~~~Il------ld~~~~~~l~~rl~~--r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i  261 (286)
                        +|.++|+      ||+.....+.+-+.+  ..+.+...++|+++..      ...||+|+++++|++
T Consensus       148 ~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~------~~~~dri~vl~~G~i  210 (231)
T d1l7vc_         148 NPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHT------LRHAHRAWLLKGGKM  210 (231)
T ss_dssp             CTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHH------HHHCSBCCBEETTEE
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH------HHHCCEEEEEECCEE
Confidence              3355555      555545555544443  2344677779998876      478999999988865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=3.8e-20  Score=150.15  Aligned_cols=168  Identities=15%  Similarity=0.230  Sum_probs=106.2

Q ss_pred             HHHhHhHHHHhcc-cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC--cCCcceeee
Q 043263           67 IELLRSLEASLGH-AFDSNPVCPPPNPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE--VNGKDYFFV  143 (286)
Q Consensus        67 ~i~~~~v~~~~~~-~l~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~--~~g~~~~~~  143 (286)
                      +++++||++.|+. +|+++++.+.+ |++++|+||||||||||+++|+|++.            |.+|+  ++|.++...
T Consensus         2 ~lev~~ls~~y~~~vl~~is~~i~~-Gei~~l~G~NGsGKSTLl~~i~gl~~------------p~~G~I~~~g~~i~~~   68 (200)
T d1sgwa_           2 KLEIRDLSVGYDKPVLERITMTIEK-GNVVNFHGPNGIGKTTLLKTISTYLK------------PLKGEIIYNGVPITKV   68 (200)
T ss_dssp             EEEEEEEEEESSSEEEEEEEEEEET-TCCEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTEEGGGG
T ss_pred             eEEEEEEEEEeCCeEEeceEEEEcC-CCEEEEECCCCChHHHHHHHHhcccc------------cCCCEEEECCEehhHh
Confidence            3678999999976 89999999998 99999999999999999999999987            55555  556543211


Q ss_pred             CHHHHHHHhhcc-------chhhhheecccccC--ccHHHHHHHHh--------cCCcEEEEeCHHHHHHHHHHhCCCcE
Q 043263          144 SKEEFLQMVDKN-------ELLEYALVYGDYKG--IPKKQIREYMA--------KGYDIVLRVDIQGARTLRRILGDSAV  206 (286)
Q Consensus       144 ~~~~~~~~i~~~-------~~~~~~~~~~~~~~--~~~~~i~~~~~--------~g~~~v~~~~~q~v~iaral~~~~~~  206 (286)
                      ... + ..+++.       ...++.......++  ...+++.++++        +....+++|++||+.+|++++.+|++
T Consensus        69 ~~~-i-~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~l  146 (200)
T d1sgwa_          69 KGK-I-FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI  146 (200)
T ss_dssp             GGG-E-EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred             cCc-E-EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCE
Confidence            000 0 000010       01111111111222  23334433322        22234678899999999999999999


Q ss_pred             EEE------EecCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccCCCcEEEECC
Q 043263          207 FVF------LAAESEMALVERLVERKT-ENREELLVRIATAREEVQHVKNFDYVVVNA  257 (286)
Q Consensus       207 ~Il------ld~~~~~~l~~rl~~r~~-~t~~~i~~rl~~~~~~~~~~~~~d~viv~~  257 (286)
                      +||      ||+.+...+++.+.+... .+...+.|+  +      ....||.+.++.
T Consensus       147 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~--~------~l~~~D~~~~l~  196 (200)
T d1sgwa_         147 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR--E------ELSYCDVNENLH  196 (200)
T ss_dssp             EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES--S------CCTTSSEEEEGG
T ss_pred             EEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe--c------hhhhcchhhhee
Confidence            999      888888777776654311 122333331  1      146799988764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=1.6e-13  Score=109.67  Aligned_cols=70  Identities=23%  Similarity=0.265  Sum_probs=56.5

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .+.+|+++++ ++.+.+|+.+|.+.+.+.+..+++.|.+..+....||.||. ++|+++++..+|.++++..
T Consensus       120 ~d~vI~v~a~-~e~r~~Rl~~R~~~~~~~~~~~~~~q~~~~~~~~~aD~vI~-N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         120 LHGTLLVAAP-LEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVLE-NTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             SSEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHHHHHCSEEEC-CSSHHHHHHHHHHHHHHSC
T ss_pred             ceeEEEEecc-hhhHHHHHHhcccchHHHHHHHHHhCCCHHHHHHhCCEEEE-CCCCHHHHHHHHHHHHHHc
Confidence            4678889987 88888999998777888888888777665555678999875 4589999999999988653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.40  E-value=5.5e-13  Score=107.92  Aligned_cols=70  Identities=13%  Similarity=0.152  Sum_probs=52.8

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .+.+|+++++ ++...+|+.+|.+.+.+.+..++..|.+..++...||.||.|+ |+++++.++|.+.+...
T Consensus       124 ~d~ii~v~~~-~~~r~~R~~~R~~~s~e~~~~~~~~Q~~~~~k~~~aD~vI~N~-~~l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         124 CDRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVINND-AELAQNLPHLQQKVLEL  193 (205)
T ss_dssp             CSEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHHHHCSEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred             hhheeeecch-HHHHHHHHHhcCCchHHHHHHHHHhCCCHHHHHHhCCEEEECC-CChHHHHHHHHHHHHHH
Confidence            3678888887 7888899999888899999999998877777778899998665 88888877777766654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.3e-12  Score=105.98  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      ...+|+++++ ++...+|+.+|++.+...+..++..|....++...||.||.|+ |+++++..++.+++..+..-
T Consensus       125 ~~~iI~V~a~-~e~r~~R~~~R~~~~~~~~~~~~~~Q~~~~~k~~~aD~vI~N~-~~le~l~~~v~~l~~~~l~~  197 (208)
T d1vhta_         125 ANRVLVVDVS-PETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNN-GAPDAIASDVARLHAHYLQL  197 (208)
T ss_dssp             CSEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHHHHHCSEEEECS-SCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCC-HHHHHHHHHHhhhhhHHHHHHHHHhCCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHHHHHH
Confidence            4667888886 7788899999988889999999988877777678999998655 88999999999888776543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.32  E-value=2.7e-12  Score=102.64  Aligned_cols=169  Identities=17%  Similarity=0.283  Sum_probs=89.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ++.+|+|+||+||||||+++.|+..+...+.++...-|...   ..+..    ....+......+.+....        .
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~---~~~~~----~~~~~~~~~~~~~~~~~~--------~   69 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ---QSGSK----DGEMIATMIKNGEIVPSI--------V   69 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH---HTTCT----THHHHHHHHHTTCCCCHH--------H
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHh---hhhhh----hhhhhhhHhhhccccchH--------H
Confidence            57899999999999999999999887533332221111000   00000    000011111111110000        0


Q ss_pred             cHHHHHHHH--hcCCcEEEEeCHHHHHH---HHHH---hCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHH
Q 043263          171 PKKQIREYM--AKGYDIVLRVDIQGART---LRRI---LGDSAVFVFLAAESEMALVERLVERKT------ENREELLVR  236 (286)
Q Consensus       171 ~~~~i~~~~--~~g~~~v~~~~~q~v~i---aral---~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~r  236 (286)
                      ....+....  ......++++-......   +...   ...+.++|+|+++ .+.+.+|+.+++.      .+.+.+..|
T Consensus        70 ~~~~~~~~~~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~-~~~~~~R~~~~~~~~~~~~d~~e~~~~R  148 (194)
T d1qf9a_          70 TVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSGRSDDNIESIKKR  148 (194)
T ss_dssp             HHHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSCCTTCSHHHHHHH
T ss_pred             HHHHHHHHhhhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecc-hHHHHHHHHhhccccccccccHHHHHHH
Confidence            000111111  12345666653322222   2221   2346788889987 7788899876532      256777888


Q ss_pred             HHHHHHHhhc----cCCC-cEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          237 IATAREEVQH----VKNF-DYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       237 l~~~~~~~~~----~~~~-d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      +.........    .+.. +.++++.++++++++++|.++++.+
T Consensus       149 l~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            8766543221    1223 4456677789999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.31  E-value=8.5e-13  Score=103.34  Aligned_cols=163  Identities=12%  Similarity=0.163  Sum_probs=89.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecc----c
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYG----D  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~  166 (286)
                      .|++|+|+||+||||||+++.|++.++                    .++..++.+.++..+.............    .
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg--------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   62 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG--------------------VPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM   62 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS--------------------SCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--------------------CCEEEecHHHHHHHHhcCCcccccchhhhHHHH
Confidence            389999999999999999999998763                    2222223333333221111100000000    0


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCH--HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC---CHHHHHHHHHHHH
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDI--QGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE---NREELLVRIATAR  241 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~--q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~---t~~~i~~rl~~~~  241 (286)
                      .+......+......+..+++++-.  .....++.. ..+..+++|+++ .+.+.+|+.+|+..   ....+.. +... 
T Consensus        63 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~-~~~~-  138 (176)
T d1zp6a1          63 IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTAL-ARPLHYIVLRTT-AAEAIERCLDRGGDSLSDPLVVAD-LHSQ-  138 (176)
T ss_dssp             HHHHHHHHHHHHHHTSCEEEECSCCCTTTTHHHHTT-CSCEEEEEEECC-HHHHHHHHHTTCTTSCCCHHHHHH-HHHH-
T ss_pred             HHHHHHHHHHHHHhcCCCeEecccccHHHHHHHHhc-ccccccccCCCC-HHHHHHHHHhCCCccccchhhHHH-HHHH-
Confidence            0001112334445666666665422  112222222 245566778886 78888999988643   2333322 2221 


Q ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                       .......++.+|.+++.+++++.++|.+.+++.+.+
T Consensus       139 -~~~~~~~~~~~idt~~~~~ee~~~~I~~~l~~~~~r  174 (176)
T d1zp6a1         139 -FADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFR  174 (176)
T ss_dssp             -TTCCGGGGGGEEECTTCCTTTTTTTTHHHHHHTTSC
T ss_pred             -HhhcccccCEEEECCCCCHHHHHHHHHHHHHcCCcC
Confidence             112234567787777668999999999988876543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.7e-11  Score=95.41  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      .+.+++|+|++||||||+++.|+..+........              .+  ..............+.... . ......
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d--------------~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~   66 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD--------------FL--HPRRNIEKMASGEPLNDDD-R-KPWLQA   66 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG--------------GG--CCHHHHHHHHTTCCCCHHH-H-HHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechh--------------hh--hHHHHhhhhccCcceehhh-h-HHHHHH
Confidence            4899999999999999999999987642221111              00  0111111110000000000 0 000000


Q ss_pred             cHHHHHHHHhcCCcEEEEeC---HHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhh
Q 043263          171 PKKQIREYMAKGYDIVLRVD---IQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE--NREELLVRIATAREEVQ  245 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~---~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~--t~~~i~~rl~~~~~~~~  245 (286)
                      ....+...+..+..++....   ......++.+ ..+..+++|+++ .+.+.+|+.+|.+.  ....+..++...  +..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~--e~~  142 (171)
T d1knqa_          67 LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREG-NPNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVTQFETL--QEP  142 (171)
T ss_dssp             HHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTT-CTTEEEEEEECC-HHHHHHHHHTSTTCCCCHHHHHHHHHHC--CCC
T ss_pred             HHHHHHHHHhccCceEeeccchHHHHHHHHHHh-CCCceEEeecCC-HHHHHHHHHhCcCCCccHHHHHhhHHHh--hCC
Confidence            11223333444445444332   2333344443 366678889987 88898999987643  455554443331  111


Q ss_pred             ccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          246 HVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       246 ~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .....|.++++.+++++++++++.++++
T Consensus       143 ~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         143 GADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CcccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence            1234567788888899999999998876

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=5.9e-11  Score=94.77  Aligned_cols=173  Identities=20%  Similarity=0.259  Sum_probs=92.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      +-.+|+|+||+||||||+++.|+..+...++++.+.-|....  -.+..    ....+......+.+......    ...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~--~~~~~----~~~~i~~~~~~~~~~~~~~~----~~~   76 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQG--RAGSQ----YGELIKNCIKEGQIVPQEIT----LAL   76 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHH--STTCS----CHHHHHHHHHTTCCCCHHHH----HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhh--hcccH----HHHHHHHhhhccccccchhH----HHH
Confidence            478999999999999999999999875444333221110000  00000    00111111111111100000    000


Q ss_pred             cHHHHHH-HHhcCCcEEEEeCH---HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHh------cCCCHHHHHHHHHHH
Q 043263          171 PKKQIRE-YMAKGYDIVLRVDI---QGARTLRRILGDSAVFVFLAAESEMALVERLVER------KTENREELLVRIATA  240 (286)
Q Consensus       171 ~~~~i~~-~~~~g~~~v~~~~~---q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r------~~~t~~~i~~rl~~~  240 (286)
                      ..+.... ........++++-+   ............+..+++++.+ .+.+.+|+..+      ...+.+.+..|++..
T Consensus        77 ~~~~~~~~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y  155 (196)
T d1ukza_          77 LRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKKRFNTF  155 (196)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCceeeeccchhHHHHHHHHHhccccceeeccCCC-HHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence            1111111 12233455666533   2223333445588999999997 77777887543      224677888888876


Q ss_pred             HHHhhc----cCCCc-EEEECCCCCHHHHHHHHHHHHHH
Q 043263          241 REEVQH----VKNFD-YVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       241 ~~~~~~----~~~~d-~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      ......    .+..+ .+.++.++++++++++|.++++.
T Consensus       156 ~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~  194 (196)
T d1ukza_         156 KETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  194 (196)
T ss_dssp             HHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            543222    12333 35567778999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.24  E-value=1.5e-10  Score=91.88  Aligned_cols=95  Identities=16%  Similarity=0.218  Sum_probs=61.5

Q ss_pred             cEEEEeCHHHHHHH---HHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc-CC--CcEEEECC
Q 043263          184 DIVLRVDIQGARTL---RRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV-KN--FDYVVVNA  257 (286)
Q Consensus       184 ~~v~~~~~q~v~ia---ral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~-~~--~d~viv~~  257 (286)
                      ..++++-......+   ......|+.+|+||++ .+.+.+|+..++  +.+.+..|+.........+ ..  ...+.++.
T Consensus        84 ~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~-~e~l~~R~~~~~--~~e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~  160 (189)
T d1zaka1          84 GWLLDGYPRSYSQAMALETLEIRPDTFILLDVP-DELLVERVVFDD--TEEKVKLRLETYYQNIESLLSTYENIIVKVQG  160 (189)
T ss_dssp             CEEEESCCCSHHHHHHHHTTTCCCSEEEEEECC-HHHHHHHHTTTC--CTTHHHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             cEEeeccchhhHHHhhhhhcccccchheeechh-hhhhhhhccccc--hHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            45666533222222   2233478899999996 788889987664  3456677777766543221 22  23355666


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccc
Q 043263          258 EGKLDSAVKLVESVIDAEKAKVRQ  281 (286)
Q Consensus       258 ~G~i~~~~~~l~~~i~~~~~~~~~  281 (286)
                      +++++++++++.+++.....+..+
T Consensus       161 ~~~idev~~~I~~~l~~il~~~~~  184 (189)
T d1zaka1         161 DATVDAVFAKIDELLGSILEKKNE  184 (189)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhhhh
Confidence            789999999999999887665543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.23  E-value=2.4e-11  Score=94.41  Aligned_cols=166  Identities=18%  Similarity=0.148  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCC-CCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMR-PGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~-~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      ++|.|+||+||||||+++.|++.++...+...+..+... .+..+..+    ......                ..+...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~----------------~~~~~~   62 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWE----SDELLA----------------LTWKNI   62 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGG----CHHHHH----------------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhH----HHHHHH----------------HHHHHH
Confidence            579999999999999999999887532221111111110 01000000    000000                000111


Q ss_pred             HHHHHHHHhcCCcEEEEeCH------HHHHHHHHHhCC-CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 043263          172 KKQIREYMAKGYDIVLRVDI------QGARTLRRILGD-SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEV  244 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~~------q~v~iaral~~~-~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~  244 (286)
                      .+.....+..+..++++...      .....+...... +..+++|+++ .+++.+|+.+|+.. .......+....+..
T Consensus        63 ~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~-~~~~~~~~~~~~~~~  140 (176)
T d2bdta1          63 TDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTN-REELLRRDALRKKD-EQMGERCLELVEEFE  140 (176)
T ss_dssp             HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECC-HHHHHHHTTTSCC-----CGGGGHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccccccHHHHHHHHHHHHhcCCCceEEEecccc-HHHHHHHHHhCCCc-hhhhHHHHHHHHHHH
Confidence            22344456677777776422      111222222222 2344567765 88999999888653 211111112211112


Q ss_pred             hccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          245 QHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       245 ~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      ......+.++.+++.+.+++.+.|.+++...+...|
T Consensus       141 ~~~~~~~~~id~~~~~~~~~~~~I~~i~~~~r~~~~  176 (176)
T d2bdta1         141 SKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFC  176 (176)
T ss_dssp             HTTCCTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHHHHHhcCCeecC
Confidence            222344556656655788888989888887666544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.1e-11  Score=97.71  Aligned_cols=178  Identities=15%  Similarity=0.133  Sum_probs=95.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc-h---hhhheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE-L---LEYALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~-~---~~~~~~~~~  166 (286)
                      +|.+|+|.|+.||||||+++.|...+...+..+..+ +.|..+.    .+    .+.++..+.... +   .....+...
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~-~~p~~~~----~~----~~~i~~~l~~~~~~~~~~~~~l~~~~   72 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFPERST----EI----GKLLSSYLQKKSDVEDHSVHLLFSAN   72 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSCTTS----HH----HHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE-eCCCCCc----cc----chhhhhhhhcccccchhhhhhHHHHH
Confidence            599999999999999999999988764322222211 1232111    00    011111111100 0   000011111


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCH---------------HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CC
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDI---------------QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT--EN  229 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~---------------q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t  229 (286)
                      ... ..+.+..++..|..+++|--.               ..+......+..|+++|+||.+ .+...+|...+..  ++
T Consensus        73 r~~-~~~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~~~~~E~  150 (209)
T d1nn5a_          73 RWE-QVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYEN  150 (209)
T ss_dssp             HHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCS
T ss_pred             HHH-HHHhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeeccc-HHHHhhhhccccccccc
Confidence            111 124567777888777776321               2222222234578999999998 6666677654332  23


Q ss_pred             HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhccc
Q 043263          230 REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAKVR  280 (286)
Q Consensus       230 ~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~  280 (286)
                      .. ..+++.....+...-...+.++++.+++++++.++|.++++....+..
T Consensus       151 ~~-~~~r~~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~~~  200 (209)
T d1nn5a_         151 GA-FQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATAT  200 (209)
T ss_dssp             HH-HHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HH-HHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhcc
Confidence            33 334443333332211224567788888999999999999999876554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.6e-11  Score=99.35  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhh---------hh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLE---------YA  161 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~---------~~  161 (286)
                      +|++|+|-|+.||||||+++.|...+...+......++.|....         ..+.++..+.......         ..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~---------~g~~i~~~~~~~~~~~~~~~~~~~~~~   71 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQ---------LAEKLRSLLLDIKSVGDEVITDKAEVL   71 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSH---------HHHHHHHHHHSTTTTTTCCCCHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCcc---------chhhhHHHHhccccccccccchHHHHH
Confidence            48999999999999999999999876433322222333442110         0111222211111100         00


Q ss_pred             eecccccCccHHHHHHHHhcCCcEEEEeC---------------HHHHHHH-HHH--hCCCcEEEEEecCCHHHHHHHHH
Q 043263          162 LVYGDYKGIPKKQIREYMAKGYDIVLRVD---------------IQGARTL-RRI--LGDSAVFVFLAAESEMALVERLV  223 (286)
Q Consensus       162 ~~~~~~~~~~~~~i~~~~~~g~~~v~~~~---------------~q~v~ia-ral--~~~~~~~Illd~~~~~~l~~rl~  223 (286)
                      .+.........+.+..++..|..++.+--               ....... ...  ...|+++|+||++ .+...+|+.
T Consensus        72 l~~~~~~~~~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~-~e~~~~Ri~  150 (210)
T d4tmka_          72 MFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKRAR  150 (210)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecch-HHHHHHHhh
Confidence            01111111122234555667766666521               1111111 111  2478999999997 778889998


Q ss_pred             HhcCCC-----HHHHHHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHHHhc
Q 043263          224 ERKTEN-----REELLVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       224 ~r~~~t-----~~~i~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~~~~  278 (286)
                      +|+...     ......++.....+.. ......++++.+++++++.++|.+.++....+
T Consensus       151 ~R~~~~~~~~~~~~~~~~v~~~y~~~~-~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~~  209 (210)
T d4tmka_         151 ARGELDRIEQESFDFFNRTRARYLELA-AQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  209 (210)
T ss_dssp             HHSSCCTTTTSCHHHHHHHHHHHHHHH-HTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hccccchhhhccHHHHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            886421     1222333333222211 12345667777889999999999999886543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.20  E-value=1.1e-10  Score=90.86  Aligned_cols=155  Identities=10%  Similarity=0.098  Sum_probs=81.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhh-heec------
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEY-ALVY------  164 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~-~~~~------  164 (286)
                      .++|.|+|++||||||+++.|+..++..                    ...++.+.+............ ...+      
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~--------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   62 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEP--------------------WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV   62 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSC--------------------EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCC--------------------eEEeecchhhccccccccchhHHhhhhcccch
Confidence            6789999999999999999999987421                    111122222221100000000 0000      


Q ss_pred             ------ccccCccHHHHHHHHhcCCcEEEEeCH----HHHHHHHHH-hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHH
Q 043263          165 ------GDYKGIPKKQIREYMAKGYDIVLRVDI----QGARTLRRI-LGDSAVFVFLAAESEMALVERLVERKTENREEL  233 (286)
Q Consensus       165 ------~~~~~~~~~~i~~~~~~g~~~v~~~~~----q~v~iaral-~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i  233 (286)
                            .+.+....+.+......+...+++...    ......... ...+...|+|+++ .+.+.+|+..|+.......
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~~~~~  141 (178)
T d1qhxa_          63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMA  141 (178)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCC-HHHHHHHHHhcCCcchhhh
Confidence                  001111112223334555665554321    112222222 2345556789987 7888899998876544333


Q ss_pred             HHHHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          234 LVRIATAREEVQHVKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       234 ~~rl~~~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      ..    +....+....+|.+|-..+-+++++.++|.+.
T Consensus       142 ~~----~~~~~~~~~~~dl~IDts~~s~ee~a~~I~~~  175 (178)
T d1qhxa_         142 AK----QAYVVHEGVEYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             HH----HTTGGGTTCCCSEEEETTSSCHHHHHHHHHTT
T ss_pred             hh----hhhhhhcCCCCCEEEECCCCCHHHHHHHHHHh
Confidence            22    12223334568887766555899999988754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.20  E-value=4.1e-11  Score=93.33  Aligned_cols=158  Identities=16%  Similarity=0.170  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHh-hccchhhh-h-eecc-c
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMV-DKNELLEY-A-LVYG-D  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i-~~~~~~~~-~-~~~~-~  166 (286)
                      ++..|+|+||+||||||+++.|+..+..+.+.                     +...+.... ........ . .... .
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELDGFQHL---------------------EVGKLVKENHFYTEYDTELDTHIIEEK   62 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE---------------------EHHHHHHHTTCSCC------CCCCCHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEE---------------------eHHHHHHHHhhhhhHHHhhcccchHHH
Confidence            48899999999999999999999876422211                     111111110 00000000 0 0000 0


Q ss_pred             ccCccHHHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHH
Q 043263          167 YKGIPKKQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRI-----ATAR  241 (286)
Q Consensus       167 ~~~~~~~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl-----~~~~  241 (286)
                      ......+.+......+...+.+.....+  ...  ..+..+|+|+++ .+.+.+|+.+|+.. ...+....     ....
T Consensus        63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~--~~~~~vI~L~~~-~e~l~~Rl~~R~~~-~~~~~~~~~~e~~~~~~  136 (174)
T d1y63a_          63 DEDRLLDFMEPIMVSRGNHVVDYHSSEL--FPE--RWFHMVVVLHTS-TEVLFERLTKRQYS-EAKRAENMEAEIQCICE  136 (174)
T ss_dssp             HHHHHHHHHHHHHTSSSEEEEECSCCTT--SCG--GGCSEEEEEECC-HHHHHHHHHHTTCC-HHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHhhhhhcccccccHHHHHH--HHH--hcCceEEEEECC-HHHHHHHHHhCCCc-ccccccchhhhhhhhhH
Confidence            0000112233445555556665432111  000  135678899986 88899999988652 22222111     1111


Q ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          242 EEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       242 ~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .+.......|.++..++.+++++.+.|.++++..
T Consensus       137 ~~~~~~~~~~~~i~~~~~t~ee~~~~V~~I~~~i  170 (174)
T d1y63a_         137 EEARDAYEDDIVLVRENDTLEQMAATVEEIRERV  170 (174)
T ss_dssp             HHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            1111123467777777788999888888777654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.3e-11  Score=94.80  Aligned_cols=172  Identities=19%  Similarity=0.275  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      +.+|+|+||+||||||+++.|+..+...+.+....-|....   ...   ......+...+..+..+.+....    ...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~---~~~---~~~~~~~~~~~~~~~~v~d~~~~----~~~   70 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERK---NPD---SQYGELIEKYIKEGKIVPVEITI----SLL   70 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH---CTT---STTHHHHHHHHHTTCCCCHHHHH----HHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHH---hhh---hhHHHHHHHHHhcCCccccchhh----HHH
Confidence            36899999999999999999998875444332221111000   000   00011111121111111110000    000


Q ss_pred             HHHHHHHH---hcCCcEEEEeCH---HHHHHHHHH---hCCCcEEEEEecCCHHHHHHHHHHhc------CCCHHHHHHH
Q 043263          172 KKQIREYM---AKGYDIVLRVDI---QGARTLRRI---LGDSAVFVFLAAESEMALVERLVERK------TENREELLVR  236 (286)
Q Consensus       172 ~~~i~~~~---~~g~~~v~~~~~---q~v~iaral---~~~~~~~Illd~~~~~~l~~rl~~r~------~~t~~~i~~r  236 (286)
                      .+.+....   ......++++..   ..+..+...   ...+..+++++.+ .+...+|+.+|+      ..+.+.+.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~-~~~~~~r~~~R~~~~~r~~~~~e~i~~r  149 (194)
T d1teva_          71 KREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN-NEICIERCLERGKSSGRSDDNRESLEKR  149 (194)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHHTSSCCSCCHHHHHHH
T ss_pred             HHhhcccchhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCc-chhheeecccCCCcccCCccchHHHHHH
Confidence            11111111   123345555533   112222222   2234566778876 677777777652      2356778888


Q ss_pred             HHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          237 IATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       237 l~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      +.........+     .....+.++.++++++++++|.+++++
T Consensus       150 ~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         150 IQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            77655543211     223455678778999999999998875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.13  E-value=8.8e-10  Score=87.30  Aligned_cols=72  Identities=13%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKT---ENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~---~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ..+.+.++++.+ .....+|+..|..   .+.+.+..|+..+......+     .......++.++++++++++|.+++.
T Consensus       108 ~~~~~~~~l~v~-~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         108 EKLDSVIEFSIP-DSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             CCCCEEEEEECC-HHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ccccccccccch-HHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            356677889986 7888899987642   36777888877665543221     22334556777899999999999886


Q ss_pred             H
Q 043263          274 A  274 (286)
Q Consensus       274 ~  274 (286)
                      +
T Consensus       187 k  187 (190)
T d1ak2a1         187 K  187 (190)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=9.5e-10  Score=86.23  Aligned_cols=86  Identities=12%  Similarity=0.151  Sum_probs=55.2

Q ss_pred             cEEEEeCHHHHH---HHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc----------CCC
Q 043263          184 DIVLRVDIQGAR---TLRRILGDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV----------KNF  250 (286)
Q Consensus       184 ~~v~~~~~q~v~---iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~----------~~~  250 (286)
                      ..++++-+....   ........|+++|+|+++ .+.+.+|+..+.  +.+.+..|+.........+          ...
T Consensus        80 g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~-~~~l~~R~~~~~--~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~  156 (179)
T d1e4va1          80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVP-DELIVDRIVKDD--QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNT  156 (179)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTTC--SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred             ceeecccccchHHhhhhhhccCCceEEEEeccc-hhhhhhhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            455555332222   223334578899999997 788889988764  5677778877654432111          122


Q ss_pred             cEEEECCCCCHHHHHHHHHHHH
Q 043263          251 DYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       251 d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      ..+.++.+++++++.++|.+++
T Consensus       157 ~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         157 KYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHh
Confidence            3456677789999999998876

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.11  E-value=6.8e-11  Score=92.34  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=41.7

Q ss_pred             HhCCCcEEEEEecCCHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          200 ILGDSAVFVFLAAESEMALVERLVERKT------ENREELLVRIATAREEVQH--VKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       200 l~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~~~i~~rl~~~~~~~~~--~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      ++.....+|||+++ .+.+.+|+..+..      .........+.....+...  ...+|.+| +.++++++++.+|.+.
T Consensus        90 ~l~~~~~~v~L~~~-~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~~~I-d~~~~~~eiv~~Ii~~  167 (170)
T d1e6ca_          90 FMRAHGTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVV-DATQPPAAIVCELMQT  167 (170)
T ss_dssp             HHHHHSEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEE-ETTSCHHHHHHHHHHH
T ss_pred             hhhccceeEEEecC-chhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEEE-cCCCCHHHHHHHHHHH
Confidence            33344678999986 8888899875422      1223333333333222111  13466555 6668999998887765


Q ss_pred             H
Q 043263          272 I  272 (286)
Q Consensus       272 i  272 (286)
                      +
T Consensus       168 L  168 (170)
T d1e6ca_         168 M  168 (170)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=7.3e-10  Score=87.09  Aligned_cols=70  Identities=21%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhcc-C--CCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKT--ENREELLVRIATAREEVQHV-K--NFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~rl~~~~~~~~~~-~--~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .+.++++++.+ .+.+.+|+..|++  .+.+.+..|++.......++ .  .-..+.++.+++++++++++.+++.
T Consensus       106 ~~~~vi~l~~~-~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         106 DIDAVLEFRVS-EEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             CCCEEEEEECC-HHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             CccEEEeccCC-HHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhcCeEEEECCCCHHHHHHHHHHHhC
Confidence            56788889987 8889999987753  36778888888776543221 1  1134556778899999999988764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.10  E-value=2e-09  Score=84.22  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=41.3

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHH---HH-hhccCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKT-----ENREELLVRIATAR---EE-VQHVKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~-----~t~~~i~~rl~~~~---~~-~~~~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      .|+.+|+|+++ .+.+.+|+.++..     .+.+.+........   .. .........++++.++.++++++++.++|+
T Consensus       112 ~~~~~i~l~~~-~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         112 NPDLIIVVETT-GDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             CCSEEEEEECC-HHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             cccceeeecCC-HHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            68899999987 5566677665322     13333321111111   11 111233456777888999999999998873

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.08  E-value=1.8e-10  Score=89.07  Aligned_cols=151  Identities=14%  Similarity=0.133  Sum_probs=77.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHH-HHHhhccchhhhheecccc-cCccH
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEF-LQMVDKNELLEYALVYGDY-KGIPK  172 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~  172 (286)
                      |+|+|++||||||++++|+..+.                    .++.  +.+.+ ... ......+.....+.. +....
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~--------------------~~~~--d~d~~ie~~-~g~~i~~~~~~~g~~~~r~~e   59 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD--------------------LVFL--DSDFLIEQK-FNQKVSEIFEQKRENFFREQE   59 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT--------------------CEEE--EHHHHHHHH-HTSCHHHHHHHHCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--------------------CCEE--ecCchhhhH-HhhhhhhHHHhhhhccchhhh
Confidence            88999999999999999998763                    2222  21111 111 000111100000100 00111


Q ss_pred             HHHHHHHhcCCcEEEEeCHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhc
Q 043263          173 KQIREYMAKGYDIVLRVDIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKTE------NREELLVRIATAREEVQH  246 (286)
Q Consensus       173 ~~i~~~~~~g~~~v~~~~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~~------t~~~i~~rl~~~~~~~~~  246 (286)
                      ..+...+......++....-.+  ....+.....+|||+++ .+.+.+|+..+...      +...+.+-+. .+... +
T Consensus        60 ~~v~~~l~~~~~~v~~~~g~~~--~~~~l~~~~~vI~L~~s-~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~-~r~~~-Y  134 (161)
T d1viaa_          60 QKMADFFSSCEKACIATGGGFV--NVSNLEKAGFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYN-ERLSK-Y  134 (161)
T ss_dssp             HHHHHHHTTCCSEEEECCTTGG--GSTTGGGGCEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHH-HHHHH-H
T ss_pred             hhhchhhhhccccccccccchh--hHHHHHhCCeEEEeccc-hHHHHHHHccccccccccccCchHHHHHHH-HHHHH-H
Confidence            2333444444444443221111  12223355788999997 77888998654321      2222222111 11111 1


Q ss_pred             cCCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          247 VKNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       247 ~~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ...||.+|..++.++++++++|.+.++
T Consensus       135 ~~~ad~~Idt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         135 EQKANFILNIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             HHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             HhhCCEEEECCCCCHHHHHHHHHHHhC
Confidence            246888887677799999999988763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.07  E-value=9.1e-10  Score=86.59  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHH-----hhccCCCcEEEECCCCCHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKT-----ENREELLVRIATAREE-----VQHVKNFDYVVVNAEGKLDSAVKLVESVI  272 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~-----~t~~~i~~rl~~~~~~-----~~~~~~~d~viv~~~G~i~~~~~~l~~~i  272 (286)
                      .|..+++|+++ .+.+.+|+.++..     .+.+.+..+.......     .........+|.+++++++++.++|.+.|
T Consensus       115 ~~~~~i~l~~~-~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         115 NPSVIFLLEAD-PKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             CCSEEEEEECC-HHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ccccceEEecC-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            68899999987 6777788765432     2334443333322111     11124456777788899999999998876


Q ss_pred             H
Q 043263          273 D  273 (286)
Q Consensus       273 ~  273 (286)
                      +
T Consensus       194 k  194 (194)
T d1nksa_         194 K  194 (194)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=4.9e-10  Score=89.17  Aligned_cols=163  Identities=20%  Similarity=0.268  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccch----hhhheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNEL----LEYALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~  166 (286)
                      ++.+|.|+||+||||||+++.|+..+...+.++.                     +-++..+.....    .......+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g---------------------~llr~~~~~~~~~~~~~~~~~~~~~   65 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG---------------------DLLRAEVSSGSARGKMLSEIMEKGQ   65 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHH---------------------HHHHHHHHHTCHHHHHHHHHHTTTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEecc---------------------HHHHHHHHHhHhhhhhhHHHHhhcc
Confidence            4789999999999999999999998752222211                     112222211110    000000011


Q ss_pred             cc--CccHHHHHHHH----hcCCcEEEEeCHHH---HHHHHHHhCCCcEEEEEecCCHHHHHHHHH------HhcCCCHH
Q 043263          167 YK--GIPKKQIREYM----AKGYDIVLRVDIQG---ARTLRRILGDSAVFVFLAAESEMALVERLV------ERKTENRE  231 (286)
Q Consensus       167 ~~--~~~~~~i~~~~----~~g~~~v~~~~~q~---v~iaral~~~~~~~Illd~~~~~~l~~rl~------~r~~~t~~  231 (286)
                      ..  ......+...+    ......++++-+..   +......+..+...++++.+ .+...+|..      .|...+.+
T Consensus        66 ~~~~~~~~~~~~~~l~~~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~r~~d~~e  144 (194)
T d3adka_          66 LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAG-PETMTKRLLKRGETSGRVDDNEE  144 (194)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTTCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCCST
T ss_pred             CCchheeeeehhhhhhhcccccccceeeeccchhHHHHHHHHHhCCccchhccccc-hhhhHhHhhhhcccccCCcchHH
Confidence            00  01111222222    22345677774422   22333445578888889887 566666644      23334566


Q ss_pred             HHHHHHHHHHHHhh----ccCCC-cEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          232 ELLVRIATAREEVQ----HVKNF-DYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       232 ~i~~rl~~~~~~~~----~~~~~-d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      .+.+|+........    +.+.. ..+.++.++++++++++|.+.|++.
T Consensus       145 ~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~l  193 (194)
T d3adka_         145 TIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDTL  193 (194)
T ss_dssp             THHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            78888887665422    22333 3445677789999999999988753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.03  E-value=7.3e-10  Score=87.94  Aligned_cols=163  Identities=14%  Similarity=0.138  Sum_probs=87.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc----hhhhheeccc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE----LLEYALVYGD  166 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~  166 (286)
                      ++..|+|+||+||||||+++.|+..+...++++.                     +-++..+....    ........+.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~g---------------------dllr~~~~~~~~~~~~~~~~~~~~~   63 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSG---------------------DLLRDNMLRGTEIGVLAKTFIDQGK   63 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHH---------------------HHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHH---------------------HHHHHHHHhhhhhhHHHHHHhhhhh
Confidence            5778999999999999999999998753333221                     11122111110    0000000111


Q ss_pred             ccCccHHH----HHHH--HhcCCcEEEEeCHHHHHHHHHH--hCCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHH
Q 043263          167 YKGIPKKQ----IREY--MAKGYDIVLRVDIQGARTLRRI--LGDSAVFVFLAAESEMALVERLVERKTENREELLVRIA  238 (286)
Q Consensus       167 ~~~~~~~~----i~~~--~~~g~~~v~~~~~q~v~iaral--~~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~  238 (286)
                      .  .+.+.    +...  .......+++|-+.....+..+  ...+..+|+|+++ .+.+.+|+..+    .+.+..|+.
T Consensus        64 ~--v~~~~~~~l~~~~~~~~~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~-~~~l~~R~~~r----~e~~~kr~~  136 (189)
T d2ak3a1          64 L--IPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVP-FEVIKQRLTDR----PETVVKRLK  136 (189)
T ss_dssp             C--CCHHHHHHHHHHHHHHHTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHTGS----HHHHHHHHH
T ss_pred             h--ccchhhhhhhhhhhhhhhhcCcccccccchhhHHHHhhhcCcceEEEEEecc-chhhhhhcccc----hHHHHHHHH
Confidence            0  11111    1111  1233456777644233333222  1267888999987 88888887654    455667776


Q ss_pred             HHHHHhh----ccC-CCcEEEECCCCCHHHHHHHHHHHHHHHHhccccc
Q 043263          239 TAREEVQ----HVK-NFDYVVVNAEGKLDSAVKLVESVIDAEKAKVRQR  282 (286)
Q Consensus       239 ~~~~~~~----~~~-~~d~viv~~~G~i~~~~~~l~~~i~~~~~~~~~~  282 (286)
                      ....+..    +.+ ....+.++. .+++++++++.+.+.....+..+.
T Consensus       137 ~y~~~~~~v~~~Y~~~~~l~~idg-~~~~eV~~~I~~~i~~~l~~~~~~  184 (189)
T d2ak3a1         137 AYEAQTEPVLEYYRKKGVLETFSG-TETNKIWPHVYAFLQTKLPQRSQE  184 (189)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEC-SSHHHHHHHHHHHHHTTSCBCSCC
T ss_pred             HHHHHHHHHHHHHHhcCCEEEECC-CChHHHHHHHHHHHHHHhhccccC
Confidence            5554322    112 223344444 368999999999988655544433

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.99  E-value=4.1e-09  Score=82.47  Aligned_cols=71  Identities=11%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHHHH
Q 043263          203 DSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDAEK  276 (286)
Q Consensus       203 ~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~~~  276 (286)
                      .+...++|+++ .+.+.+|+..+.  +.+.+..|+.........+     ...+.+.|+.++++++++++|.++|.++.
T Consensus       106 ~~~~~~~l~~~-~e~~~~R~~~~~--~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         106 KLDYVIHIDVR-QDVLMERLTADD--NEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             CCCEEEEEECC-HHHHHHHHHTTC--SHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             ceeeeeccccc-cchhhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhcc
Confidence            45677788987 778888887654  5777888888766543221     22345667878899999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-09  Score=86.15  Aligned_cols=27  Identities=33%  Similarity=0.343  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+|.|+|++||||||+++.|+..+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999998754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=4.1e-09  Score=82.69  Aligned_cols=66  Identities=15%  Similarity=0.118  Sum_probs=42.9

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh----cc-CCCcEEEECCCCCHHHHHHHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQ----HV-KNFDYVVVNAEGKLDSAVKLVESVID  273 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~----~~-~~~d~viv~~~G~i~~~~~~l~~~i~  273 (286)
                      ..|.++|+|+++ .+.+.+|+..+     +.+..|++.......    .. +....+.++.+++++++.++|.+.+.
T Consensus       108 ~~~~~vi~L~~~-~~~~~~R~~~~-----~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         108 TPLEKAIELKVD-DELLVARITNA-----DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             CCCCEEEEEECC-HHHHHHHHHSH-----HHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             CCceeeeecccc-cchhhhccccc-----ccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            457788999997 78888887644     334555554432211    11 12234567778899999999988764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.9e-09  Score=85.82  Aligned_cols=26  Identities=31%  Similarity=0.509  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +-+|||+|++||||||+++.|+..+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999988764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.87  E-value=1.6e-08  Score=79.32  Aligned_cols=68  Identities=13%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             CcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc-----CCCcEEEECCCCCHHHHHHHHHHHHHH
Q 043263          204 SAVFVFLAAESEMALVERLVERKTENREELLVRIATAREEVQHV-----KNFDYVVVNAEGKLDSAVKLVESVIDA  274 (286)
Q Consensus       204 ~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl~~~~~~~~~~-----~~~d~viv~~~G~i~~~~~~l~~~i~~  274 (286)
                      +.+.+.++.+ .+.+.+|++..  .+.+.+..|++........+     +....+.++.++++++++++|.++++.
T Consensus       107 i~~~~~l~~~-~e~~~~R~~~~--~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~~  179 (182)
T d1s3ga1         107 IEHVLNIQVE-KEELIARLTAD--DNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG  179 (182)
T ss_dssp             CCEEEEEECC-HHHHHHHHHTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHTC
T ss_pred             eeeccchhhh-hhhhhhhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            3555668876 77777887654  36777888888665443221     233455667777899999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.86  E-value=8.5e-09  Score=79.51  Aligned_cols=24  Identities=38%  Similarity=0.584  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .|+|+||+||||||+++.|+..++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999998764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=7.5e-09  Score=79.96  Aligned_cols=150  Identities=17%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHH-HHHhhccchhhhheeccc--ccCcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEF-LQMVDKNELLEYALVYGD--YKGIP  171 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~--~~~~~  171 (286)
                      |+|+|++||||||++++|+..+.                    .++.  +.+.+ ... ......+.....+.  .....
T Consensus         4 IvliG~~G~GKSTig~~La~~l~--------------------~~fi--D~D~~ie~~-~g~~i~~~~~~~g~~~~r~~e   60 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG--------------------VGLL--DTDVAIEQR-TGRSIADIFATDGEQEFRRIE   60 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT--------------------CCEE--EHHHHHHHH-HSSCHHHHHHHHCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--------------------CCeE--eeccchhhh-hhhhhhhhhhhhhHHHHHHHH
Confidence            66779999999999999998763                    2222  21111 111 00001000000111  00111


Q ss_pred             HHHHHHHHhcCCcEEEEe-CHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC------CCH-HHHHHHHHHHHHH
Q 043263          172 KKQIREYMAKGYDIVLRV-DIQGARTLRRILGDSAVFVFLAAESEMALVERLVERKT------ENR-EELLVRIATAREE  243 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~-~~q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~------~t~-~~i~~rl~~~~~~  243 (286)
                      .+.+...+.....+++.+ ..-.-...+.++ .....|||+++ .+.+.+|+..+..      .+. +.+...+.. +..
T Consensus        61 ~~~~~~~~~~~~~vi~~gg~~~~~~~~~~~l-~~~~~I~L~~~-~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~e-R~~  137 (165)
T d2iyva1          61 EDVVRAALADHDGVLSLGGGAVTSPGVRAAL-AGHTVVYLEIS-AAEGVRRTGGNTVRPLLAGPDRAEKYRALMAK-RAP  137 (165)
T ss_dssp             HHHHHHHHHHCCSEEECCTTGGGSHHHHHHH-TTSCEEEEECC-HHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHH-HHH
T ss_pred             hhhhhhccccccccccccccccccccccccc-cccceeeeecc-chhhhhcccccccchhccCccHHHHHHHHHHH-HHH
Confidence            122333344444444432 111112234444 45667889886 7788888864321      122 223322221 111


Q ss_pred             hhccCCCcEEEECCCCCHHHHHHHHHHH
Q 043263          244 VQHVKNFDYVVVNAEGKLDSAVKLVESV  271 (286)
Q Consensus       244 ~~~~~~~d~viv~~~G~i~~~~~~l~~~  271 (286)
                      . +-+.||.+|-.++.+++++.++|.+.
T Consensus       138 ~-Y~~~ad~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1         138 L-YRRVATMRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             H-HHHHCSEEEECSSSCHHHHHHHHHTT
T ss_pred             H-HHhhCCEEEECCCCCHHHHHHHHHhc
Confidence            1 12458888866656899999887653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.83  E-value=2.4e-08  Score=75.45  Aligned_cols=125  Identities=15%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheec----cccc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVY----GDYK  168 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~  168 (286)
                      ++|.|+|++||||||+++.|.....                     .+..++.+.+................    ....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~---------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNP---------------------GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT   61 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHST---------------------TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC---------------------CCEEechHHHHHHHhcccchhhhhhhhhhhHHHH
Confidence            5789999999999999998865432                     12233443333322111000000000    0000


Q ss_pred             CccHHHHHHHHhcC---CcEEEEe---CH----HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHhcC--CCHHHHHHH
Q 043263          169 GIPKKQIREYMAKG---YDIVLRV---DI----QGARTLRRILGDSAVFVFLAAESEMALVERLVERKT--ENREELLVR  236 (286)
Q Consensus       169 ~~~~~~i~~~~~~g---~~~v~~~---~~----q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r~~--~t~~~i~~r  236 (286)
                      ....+.+..++..+   ..++++.   ..    +...+++.. .-+..+|++|++ .+.+.+|+.+|+.  .+.+.+...
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~  139 (152)
T d1ly1a_          62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEY-GWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSM  139 (152)
T ss_dssp             HHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHH-TCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCCcccccccCCHHHHHHHHHhhhhh-ccchhhhhcCCC-HHHHHHHHHccCCCCCCHHHHHHH
Confidence            11122233334433   2345442   11    223444443 356677889886 7888899888753  255666554


Q ss_pred             HHHH
Q 043263          237 IATA  240 (286)
Q Consensus       237 l~~~  240 (286)
                      .+..
T Consensus       140 ~~~~  143 (152)
T d1ly1a_         140 YKSM  143 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.73  E-value=1.6e-09  Score=85.72  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+|||.||+||||||+++.|...+.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999999987765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.8e-08  Score=79.07  Aligned_cols=75  Identities=11%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHh-hc---------cCCCcEEEECCCCCHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTENR----EELLVRIATAREEV-QH---------VKNFDYVVVNAEGKLDSAVKL  267 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~t~----~~i~~rl~~~~~~~-~~---------~~~~d~viv~~~G~i~~~~~~  267 (286)
                      ..|+++|+||.+ .+...+|+.+|+....    ..-..++....... ..         ...++.++++.+.++++..++
T Consensus       151 ~~Pdl~i~Ld~~-pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~  229 (241)
T d1p5zb_         151 LELDGIIYLQAT-PETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYES  229 (241)
T ss_dssp             HCCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHH
T ss_pred             CCCceeeeeccC-HHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHH
Confidence            378999999997 7777799887764211    12223333322221 10         112456667766789999999


Q ss_pred             HHHHHHHHHh
Q 043263          268 VESVIDAEKA  277 (286)
Q Consensus       268 l~~~i~~~~~  277 (286)
                      +.+.++....
T Consensus       230 i~~~i~~~l~  239 (241)
T d1p5zb_         230 LVEKVKEFLS  239 (241)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.63  E-value=3e-09  Score=82.67  Aligned_cols=27  Identities=22%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+|.|+|++||||||+++.|+..+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            599999999999999999999998763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=1.1e-07  Score=75.63  Aligned_cols=66  Identities=20%  Similarity=0.118  Sum_probs=41.1

Q ss_pred             CCCcEEEEEecCCHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHhhccC-CCcEEEECCCCCHHHHHHHH
Q 043263          202 GDSAVFVFLAAESEMALVERLVERKTE----------NREELLVRIATAREEVQHVK-NFDYVVVNAEGKLDSAVKLV  268 (286)
Q Consensus       202 ~~~~~~Illd~~~~~~l~~rl~~r~~~----------t~~~i~~rl~~~~~~~~~~~-~~d~viv~~~G~i~~~~~~l  268 (286)
                      ..|+++|+|+.+ .+...+|+.+|++.          ......+++.....+..... ....++++.+.+++++.++|
T Consensus       131 ~~Pd~~i~L~~~-~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         131 PKPDWQVLLAVS-AELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             CCCSEEEEECCC-HHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHHH
T ss_pred             cCCceeEEeccc-HHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHhh
Confidence            478999999997 77777888876431          12334455544333322112 23356667788898888775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=1.7e-07  Score=75.40  Aligned_cols=173  Identities=12%  Similarity=0.084  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccc--h---hhhheecc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNE--L---LEYALVYG  165 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~--~---~~~~~~~~  165 (286)
                      +|.+|+|-|+.||||||++++|...+..-...+.   . |..+.    .+    .+.++..+....  +   .....+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~---~-p~~~~----~~----g~~ir~~l~~~~~~~~~~~~~llf~a   69 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLK---F-PERST----RI----GGLINEYLTDDSFQLSDQAIHLLFSA   69 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE---S-SCTTS----HH----HHHHHHHHHCTTCCCCHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE---E-CCCCc----hH----hHhHHHhhhhccccccchHHHHHHHH
Confidence            5999999999999999999999987642111111   1 21111    00    111122211110  0   01111111


Q ss_pred             cccCccHHHHHHHHhcCCcEEEEeCH------HH--------HHHHHH---HhCCCcEEEEEecCCHHHHHHHHHHhcCC
Q 043263          166 DYKGIPKKQIREYMAKGYDIVLRVDI------QG--------ARTLRR---ILGDSAVFVFLAAESEMALVERLVERKTE  228 (286)
Q Consensus       166 ~~~~~~~~~i~~~~~~g~~~v~~~~~------q~--------v~iara---l~~~~~~~Illd~~~~~~l~~rl~~r~~~  228 (286)
                      ..+.. ...+...+..|..+++|--.      |.        +.....   .+..|+++|+||.++...+ .|...++..
T Consensus        70 ~r~~~-~~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~-~r~~~~~~~  147 (214)
T d1tmka_          70 NRWEI-VDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNN-AEKSGFGDE  147 (214)
T ss_dssp             HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC-----------CCSS
T ss_pred             HHHHH-HHHHHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHH-HHhcccchh
Confidence            11111 23456667777777776221      00        111111   1248899999998755444 443433322


Q ss_pred             ---CHHHHHHHHHHHHHHh----hccCCCcEEEECCC-CCHHHHHHHHHHHHHHHHhc
Q 043263          229 ---NREELLVRIATAREEV----QHVKNFDYVVVNAE-GKLDSAVKLVESVIDAEKAK  278 (286)
Q Consensus       229 ---t~~~i~~rl~~~~~~~----~~~~~~d~viv~~~-G~i~~~~~~l~~~i~~~~~~  278 (286)
                         +.+ ...++.......    ......+.++++.. ..++++.++|.++++.....
T Consensus       148 ~~e~~~-~~~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~  204 (214)
T d1tmka_         148 RYETVK-FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST  204 (214)
T ss_dssp             TTCCHH-HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhHH-HHHHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence               332 223333222111    11123455555543 47899999999999886543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.9e-07  Score=72.43  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGI  170 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (286)
                      ++.+|.++|++||||||+++.|....+                      +..++.+.+...                 ..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~~----------------------~~~i~~D~~~~~-----------------~~   53 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSAG----------------------YVHVNRDTLGSW-----------------QR   53 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGGT----------------------CEEEEHHHHCSH-----------------HH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcC----------------------CEEEchHHHHHH-----------------HH
Confidence            478999999999999999998865432                      222333332110                 01


Q ss_pred             cHHHHHHHHhcCCcEEEEeCH-------HHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHh
Q 043263          171 PKKQIREYMAKGYDIVLRVDI-------QGARTLRRILGDSAVFVFLAAESEMALVERLVER  225 (286)
Q Consensus       171 ~~~~i~~~~~~g~~~v~~~~~-------q~v~iaral~~~~~~~Illd~~~~~~l~~rl~~r  225 (286)
                      ..+.+...+..|..++++..-       +.+.+|+.. +-+..+|+++++ .+.+++|...|
T Consensus        54 ~~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~-~~~~~~v~l~~~-~e~~~~Rn~~R  113 (172)
T d1yj5a2          54 CVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDA-GVPCRCFNFCAT-IEQARHNNRFR  113 (172)
T ss_dssp             HHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHH-TCCEEEEEECCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHhc-CCCEEEEEeCCC-HHHHHHHHHHh
Confidence            134556678889999998521       223444443 345567778875 88888988776

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=5.5e-08  Score=73.89  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.|.|+||+||||||+++.|+..+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999998764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.49  E-value=2.1e-07  Score=74.49  Aligned_cols=164  Identities=15%  Similarity=0.076  Sum_probs=81.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhcc-chhhhheecccccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKN-ELLEYALVYGDYKG  169 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~  169 (286)
                      +|.+|-|+|.|||||||+++.|...+..                ..+.....++.+.++..+..+ .+-... ...+. .
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l~~----------------~~~~~~~~ldgD~iR~~l~~~l~ys~~~-r~~~~-~   84 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQLVR----------------DRRVHAYRLDGDNIRFGLNKDLGFSEAD-RNENI-R   84 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHH----------------HHCCCEEEECHHHHTTTTTTTCCSSHHH-HHHHH-H
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH----------------hcCceEEEEcchHHHHhhcCCCCCChhH-HHHHH-H
Confidence            5999999999999999999999865420                012233345555554433111 110000 00000 0


Q ss_pred             ccHHHHHHHHhcCCcEEEEe---CHHHHHHHHHHh---------CCCcEEEEEecCCHHHHHHHHHHhcCCCHHHHHHHH
Q 043263          170 IPKKQIREYMAKGYDIVLRV---DIQGARTLRRIL---------GDSAVFVFLAAESEMALVERLVERKTENREELLVRI  237 (286)
Q Consensus       170 ~~~~~i~~~~~~g~~~v~~~---~~q~v~iaral~---------~~~~~~Illd~~~~~~l~~rl~~r~~~t~~~i~~rl  237 (286)
                      ...+........|..+++..   ....-..+|.++         ..+-+.|+|+++ .+.+.+|..++..  .......+
T Consensus        85 r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~-le~~~~Rd~k~~y--~~~~~~~~  161 (208)
T d1m7ga_          85 RIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRDPKGLY--KKAREGVI  161 (208)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSCTTCHH--HHHHHTSS
T ss_pred             HHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCC-HHHHHHhhcccch--hhhhcCcc
Confidence            00112233345666666653   112223334432         234567889997 7777665332210  00000000


Q ss_pred             HH---HHHHhhccCCCcEEEECCCCCHHHHHHHHHHHHHHH
Q 043263          238 AT---AREEVQHVKNFDYVVVNAEGKLDSAVKLVESVIDAE  275 (286)
Q Consensus       238 ~~---~~~~~~~~~~~d~viv~~~G~i~~~~~~l~~~i~~~  275 (286)
                      ..   .....+....+|.+|-+++.++++.+++|.+.+++.
T Consensus       162 ~~~~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~~  202 (208)
T d1m7ga_         162 KEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTK  202 (208)
T ss_dssp             SSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred             cceecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            00   000112234577777555558999999998888763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.40  E-value=1.4e-06  Score=67.24  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.|+|+||+||||||+++.|+..++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999998875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.40  E-value=1.1e-06  Score=70.36  Aligned_cols=34  Identities=29%  Similarity=0.351  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeee
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTA  125 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~  125 (286)
                      ..+|+|.||+||||||++++|+..+...+.+.++
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            4578999999999999999999988755555443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.39  E-value=1.4e-07  Score=78.77  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+|||+|+|||||||+++.|...+.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            45899999999999999999988764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.31  E-value=5.3e-07  Score=71.03  Aligned_cols=27  Identities=26%  Similarity=0.621  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++.+|+|.|+.||||||+++.|++.+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999998875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.6e-07  Score=72.38  Aligned_cols=29  Identities=34%  Similarity=0.500  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcce
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLH  120 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~  120 (286)
                      +++|+|-|+.||||||++++|...+....
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            58999999999999999999998876433

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.26  E-value=2.5e-07  Score=71.49  Aligned_cols=25  Identities=44%  Similarity=0.704  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccCc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRDS  118 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~~  118 (286)
                      .|+|+||||||||||++.|++.++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999998763

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=2.2e-05  Score=61.67  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+|+++|.+||||||+++.|+..+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999997654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.6e-06  Score=64.82  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999987653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.85  E-value=3.9e-06  Score=64.05  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++++|+|.+|||||||++.|...+.
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999998877654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=2.6e-06  Score=67.93  Aligned_cols=32  Identities=34%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeee
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVT  124 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~  124 (286)
                      .+|+|.||+||||||+++.|+..|...+.+.+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~iStG   35 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG   35 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEECHH
Confidence            38999999999999999999998864444433

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.72  E-value=9.5e-06  Score=65.70  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+|||+|+.||||||++++|.+.++
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g   26 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYS   26 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            57899999999999999999976543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=8.5e-06  Score=62.46  Aligned_cols=25  Identities=40%  Similarity=0.655  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.|.|+||+|+||||+++.+++.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3589999999999999999998763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.46  E-value=4.8e-05  Score=62.09  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..|.|.||+||||||+++.|++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            56699999999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=2.9e-05  Score=65.21  Aligned_cols=27  Identities=37%  Similarity=0.513  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.+|||.|++||||||+++.|..++.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            468999999999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=4.5e-05  Score=60.89  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|++.+++|+||+|||||++.|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            48999999999999999999998653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.29  E-value=6.4e-05  Score=60.30  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .+|+|+|+.|||||||++.|...+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            379999999999999999998654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.27  E-value=8.6e-05  Score=58.59  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++.+++++||+||||||.+-.|+..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998888664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=8.5e-05  Score=61.53  Aligned_cols=24  Identities=38%  Similarity=0.657  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +.+|||.|++||||||+++.|...
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHH
Confidence            679999999999999999887544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00014  Score=57.49  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++.+++++||+|+||||.+-.|+..+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988887654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=7.2e-05  Score=56.91  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.18  E-value=0.0011  Score=55.76  Aligned_cols=26  Identities=35%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ...|+|-|+.||||||+++.|...+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            45699999999999999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00016  Score=55.58  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +-.|+|+|.+|+|||||++.|.+.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            567999999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00012  Score=61.96  Aligned_cols=27  Identities=26%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+|||+|++|||||||+..|...+.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            468899999999999999999987643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00015  Score=54.30  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |..|+|+|++|+|||||++.|.+.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            567999999999999999999875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.00013  Score=56.67  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.04  E-value=0.00031  Score=59.22  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +..+|||+|++|||||||+..|...+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00015  Score=55.40  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .+|+|+|.+|+|||||++.|.+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.03  E-value=5.2e-05  Score=60.76  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|++.+++|+||+|||||++.|.+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            47889999999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00022  Score=57.07  Aligned_cols=23  Identities=26%  Similarity=0.651  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+.||+|+||||++++|+..+.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHhccC
Confidence            78999999999999999998765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.99  E-value=0.00025  Score=55.94  Aligned_cols=26  Identities=35%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++.+++++||+|+||||.+-.|+..+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999988888655

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0003  Score=55.49  Aligned_cols=25  Identities=44%  Similarity=0.732  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+++++||+|+||||.+-.|+..+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998888655

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.0003  Score=56.68  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ...+.|.||+|+||||++++|+..+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            45699999999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.97  E-value=0.00029  Score=55.52  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++.++.++||+|+||||.+-.|+..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46889999999999999998888665

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.97  E-value=0.00023  Score=52.79  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|||||||++.|.+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=2.7e-05  Score=60.42  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.+|+|+|||||||++.+|.-.+
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999997543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00017  Score=59.92  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.+|+|||||||||++++|.-.+
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3589999999999999999996543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.91  E-value=0.0002  Score=58.47  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .-.|+|+|.+|+||||+++.|.|.-
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Confidence            4579999999999999999999863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.90  E-value=0.00022  Score=54.56  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00021  Score=55.74  Aligned_cols=25  Identities=20%  Similarity=0.213  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|.++.|.||+||||||++-.++..
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4999999999999999999888754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00028  Score=53.67  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|+|+|.+|+|||||++.|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00029  Score=54.92  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|||||||++.|.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.85  E-value=0.00023  Score=54.12  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +.-.|+|+|++|||||||++.|.+-
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3556999999999999999999764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.00015  Score=55.69  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 043263           95 IVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |||+|++++|||||++.|.+.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00033  Score=51.89  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.00028  Score=56.53  Aligned_cols=23  Identities=26%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.+.||+|+||||+++++++.+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            77999999999999999998764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.82  E-value=0.00046  Score=51.46  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      --.|+|+|.+|||||||++.+.+-
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            345999999999999999999764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.82  E-value=0.00031  Score=56.00  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .+.|.||+|+||||++++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00054  Score=51.33  Aligned_cols=27  Identities=19%  Similarity=0.471  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +|.+|.|.|+-||||||+++.+++.+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            389999999999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.75  E-value=0.00048  Score=57.66  Aligned_cols=25  Identities=32%  Similarity=0.651  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .-+.++||+|||||++++.|++.+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccc
Confidence            3477999999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.00024  Score=54.31  Aligned_cols=21  Identities=14%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 043263           95 IVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |||+|.+++|||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.69  E-value=0.00049  Score=51.57  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..|+|+|++|||||||++.|.+.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            45899999999999999999764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.0011  Score=53.48  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      -+.|.||+|+|||++++.|+..+.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            389999999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00047  Score=54.85  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.|.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00049  Score=59.45  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +.+.+|+|+|||||||++.+|+
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999986

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00017  Score=53.86  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|.+|+|||||++.|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00059  Score=53.25  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|++|||||||++.|.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.60  E-value=0.00072  Score=54.62  Aligned_cols=25  Identities=24%  Similarity=0.565  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .-|.|.||+|||||++++.|+....
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc
Confidence            4488999999999999999998765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00089  Score=54.42  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .-+.|.||+|||||++++.|+..+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcC
Confidence            4488999999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00051  Score=54.40  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.|.||+|+||||++++|+..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6799999999999999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.58  E-value=0.00059  Score=55.07  Aligned_cols=26  Identities=27%  Similarity=0.334  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+.|.||+|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            45689999999999999999998763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00035  Score=53.20  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+++|||||++.|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            566999999999999999999764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.00064  Score=57.25  Aligned_cols=136  Identities=14%  Similarity=0.120  Sum_probs=71.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      +.-+.|+|+.||||||+++.|.+..+...-.+..-+  +.+-.+.+..                ... .....+.  -..
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd--~~El~l~~~~----------------~~~-~~~~~~~--~~~  224 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED--TEEIVFKHHK----------------NYT-QLFFGGN--ITS  224 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES--SCCCCCSSCS----------------SEE-EEECBTT--BCH
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeeccc--hhhhhccccc----------------ccc-eeccccc--hhH
Confidence            345899999999999999999988752111111000  0000000000                000 0000001  012


Q ss_pred             HHHHHHHHhcCCcEEEEeCH---HHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHHhc-------CCCHHHHHHHHHHH
Q 043263          172 KKQIREYMAKGYDIVLRVDI---QGARTLRRILGDSA-VFVFLAAESEMALVERLVERK-------TENREELLVRIATA  240 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~~---q~v~iaral~~~~~-~~Illd~~~~~~l~~rl~~r~-------~~t~~~i~~rl~~~  240 (286)
                      .+.+..++....+.++-|+.   .....+.++...-. .+-=+=+.+.....+||....       +.+...+..++.. 
T Consensus       225 ~~ll~~~lR~~pd~iivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l~~~~~~~~~~~~~~~~~~i~~-  303 (323)
T d1g6oa_         225 ADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKD-  303 (323)
T ss_dssp             HHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHH-
T ss_pred             HHHHHHHhccCCCcccCCccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcccchhhccCCHHHHHHHHHh-
Confidence            34566677777887776654   33444555543333 444477777777778876421       2255666655554 


Q ss_pred             HHHhhccCCCcEEEECC
Q 043263          241 REEVQHVKNFDYVVVNA  257 (286)
Q Consensus       241 ~~~~~~~~~~d~viv~~  257 (286)
                              ..|.||.++
T Consensus       304 --------~vd~vV~i~  312 (323)
T d1g6oa_         304 --------LIDMIVHIN  312 (323)
T ss_dssp             --------HCCEEEEEC
T ss_pred             --------heeEEEEEe
Confidence                    367766554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0015  Score=53.24  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.-+.|.||+|+|||++++.+++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34488999999999999999999865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.47  E-value=0.00085  Score=50.63  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ...|+|+|.+|||||||++.|.+.
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            466999999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.0014  Score=57.52  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeee
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVT  124 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~  124 (286)
                      +-|.++||+|||||-|++.|++.++.....+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            34999999999999999999998763333333

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0018  Score=52.47  Aligned_cols=23  Identities=26%  Similarity=0.627  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhccC
Q 043263           95 IVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.|.||+|||||++++.++....
T Consensus        41 iLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEecCCCCCchHHHHHHHHHhC
Confidence            88999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0009  Score=53.48  Aligned_cols=26  Identities=19%  Similarity=0.057  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           88 PPPNPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        88 ~~~~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +++ |.++.|.|++||||||++-.++.
T Consensus        34 ip~-G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IES-MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCS-SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence            444 99999999999999999988874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.0011  Score=53.45  Aligned_cols=26  Identities=23%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +.++.|.||+|+|||||++.++....
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            57899999999999999998876544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00054  Score=54.50  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|.++.|.|++||||||++-.++-
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            499999999999999999987753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.40  E-value=0.011  Score=50.89  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCCcCCcceeeeCHHHHHHHhhccchhhhheecccccCcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGEVNGKDYFFVSKEEFLQMVDKNELLEYALVYGDYKGIP  171 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (286)
                      .-+|.|+||.||||||++..+..........+. +-..|-+..+.|..-..                    +.......-
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~-tiEdPiE~~~~~~~q~~--------------------v~~~~~~~~  216 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNIL-TVEDPIEFDIDGIGQTQ--------------------VNPRVDMTF  216 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE-EEESSCCSCCSSSEEEE--------------------CBGGGTBCH
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCCCceEE-EeccCcccccCCCCeee--------------------ecCCcCCCH
Confidence            567999999999999999999876532111111 00112121122221100                    000000112


Q ss_pred             HHHHHHHHhcCCcEEEEeCHH---HHHHHHHHhCCCcEEEE--EecCCHHHHHHHHHHhcC
Q 043263          172 KKQIREYMAKGYDIVLRVDIQ---GARTLRRILGDSAVFVF--LAAESEMALVERLVERKT  227 (286)
Q Consensus       172 ~~~i~~~~~~g~~~v~~~~~q---~v~iaral~~~~~~~Il--ld~~~~~~l~~rl~~r~~  227 (286)
                      .+.+..++....++++-|+..   -...|.... ....+||  +-+.+......||...+.
T Consensus       217 ~~~l~~~lR~dPDvi~igEiRd~~ta~~a~~aa-~tGhlV~tTlHa~~a~~~~~Rl~~~~~  276 (401)
T d1p9ra_         217 ARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS-LTGHLVMSTLHTNTAVGAVTRLRDMGI  276 (401)
T ss_dssp             HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH-HTTCEEEEEECCSSSHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhcCCEEEecCcCChHHHHHHHHHH-hcCCeEEEEeccCchHhhhhhhhhccc
Confidence            345667778888888877652   222222222 2234444  777777777788877654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.37  E-value=0.00098  Score=49.90  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|++|+|||||++.|.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999998875

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0011  Score=53.09  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..++.|+|||+|||||++|.+.-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            57899999999999999998863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0012  Score=49.94  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999999875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.0012  Score=49.73  Aligned_cols=22  Identities=32%  Similarity=0.535  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+++|.+|+|||||++.|.+
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3589999999999999998875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.30  E-value=0.00088  Score=53.57  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|.++.|.|++||||||++-.++.
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            499999999999999999977754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.30  E-value=0.00095  Score=50.93  Aligned_cols=22  Identities=36%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -|+|+|.+.||||||++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4999999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.29  E-value=0.0014  Score=55.91  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ++..+.+.||+|+||||+++.|++.+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            478899999999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0009  Score=53.64  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.|.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            7899999999999999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0013  Score=49.16  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988774

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0015  Score=49.66  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |.=|.|+|+||+||||++-.|...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            677999999999999999887754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.25  E-value=0.00069  Score=54.97  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++.|.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            56678999999999999999764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0012  Score=52.21  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.|.||+|+||||++++|+..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6799999999999999999764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.24  E-value=0.0013  Score=49.69  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .-.|+++|++|+|||||++.|.+
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999998865

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.20  E-value=0.0012  Score=54.69  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +..+||+|.+.||||||.+.|.+.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            567999999999999999999864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.19  E-value=0.0016  Score=49.69  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |.=+.|.|+||+||||++-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            677999999999999999887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0014  Score=49.05  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|.+|+|||||++.|.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0016  Score=49.33  Aligned_cols=21  Identities=33%  Similarity=0.697  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .++++|++|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0012  Score=49.49  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ...|+|+|.+|+|||||++.+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45699999999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.17  E-value=0.0016  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      ..++.|+|||.+||||++|.+.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhH
Confidence            4589999999999999999775

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.16  E-value=0.0011  Score=52.80  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|.++.|.|++||||||++..++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4999999999999999999888654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0017  Score=48.87  Aligned_cols=22  Identities=32%  Similarity=0.730  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+|+|.+|+|||||++.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0017  Score=48.52  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+++|.+|+|||||++.+..-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0019  Score=48.74  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+++|.+|+|||||++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.06  E-value=0.0014  Score=51.99  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+++.|.|++|+||||++-.++-.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4999999999999999999888643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=49.62  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|++|+|||||++.|.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999998874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.002  Score=48.26  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.|+|+|.+|+|||||++.+.+-
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999988753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0018  Score=45.83  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +|..|.++|-+||||||+++.|.-.+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999996543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0019  Score=48.57  Aligned_cols=21  Identities=24%  Similarity=0.586  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0019  Score=48.55  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+|+|.+|+|||||++.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.00  E-value=0.0022  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..+|+|+|.+.||||||++.|.+.
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhh
Confidence            456999999999999999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.002  Score=48.33  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            4899999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0022  Score=47.96  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.93  E-value=0.0016  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +|+++.|.|++|+||||++--++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            49999999999999999986544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0024  Score=47.55  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|..|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.0024  Score=48.66  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+++|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0024  Score=47.75  Aligned_cols=22  Identities=32%  Similarity=0.656  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+|+|.+|+|||||++.|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.91  E-value=0.0027  Score=47.97  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |.=|.|+|+||+||||++-.|...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            677999999999999999777654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0023  Score=47.62  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=47.91  Aligned_cols=21  Identities=24%  Similarity=0.613  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0027  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+|+|.+|+|||||++.+.+
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0025  Score=47.99  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+++|.+|+|||||++.+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999998874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0025  Score=48.56  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .-.|+|+|.+|+|||||++.+..
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            45699999999999999988875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0027  Score=47.95  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|.+|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999888753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0043  Score=51.74  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ...+.++||+|+|||.|++.|+..+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            34688999999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0029  Score=47.45  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|++|+|||||++.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0032  Score=47.46  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+|+|.+|+|||||++.+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999998874

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.003  Score=49.94  Aligned_cols=24  Identities=21%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .++.|+|.-||||||+++.|....
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            578999999999999999887653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0025  Score=49.07  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|+.|+|||||++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            489999999999999998875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0021  Score=55.55  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +--|+|+|.+|+|||||++.|.|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            455999999999999999999985

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0032  Score=51.57  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      =.+|+|+||.++|||||++.|.+..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3589999999999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.74  E-value=0.0019  Score=48.66  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ...|+|+|++|+|||||++.+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.69  E-value=0.0033  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|+++.|.|++|+||||++..++-
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            499999999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0034  Score=47.42  Aligned_cols=22  Identities=41%  Similarity=0.753  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+++|.+|+|||||++.|.+
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0035  Score=46.97  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0035  Score=46.96  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+++|.+|+|||||++.|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0037  Score=46.87  Aligned_cols=22  Identities=27%  Similarity=0.709  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+|+|++|+|||||++.+..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0032  Score=47.44  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.64  E-value=0.0032  Score=52.94  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      -.|.|-|+.||||||+++.|+..+.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            5689999999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.63  E-value=0.0038  Score=46.80  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+|+|.+|+|||||++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.58  E-value=0.0032  Score=47.74  Aligned_cols=23  Identities=39%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      --.|+++|++|+|||||++.|.+
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999998754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.57  E-value=0.0056  Score=50.01  Aligned_cols=41  Identities=20%  Similarity=0.114  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccCcceeeeeecccCCCCCC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRDSLHFVVTATSRPMRPGE  134 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~i~~~~r~~~~G~  134 (286)
                      ..+||+|-+.+||||+.+.|.+.-. -....+.+|-.|..|.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gv   43 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGV   43 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEE
Confidence            5699999999999999999997532 1222334454566554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.51  E-value=0.0021  Score=53.98  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      -+.|.|++|+||||+++.|.++++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCC
Confidence            389999999999999999999875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.49  E-value=0.0037  Score=52.52  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..|+|-|+.||||||+++.|...+.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4589999999999999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.49  E-value=0.0025  Score=53.14  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -|||+|-+.+|||||.+.|.+.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0046  Score=46.14  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+|+|.+|+|||||++.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4589999999999999998874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0044  Score=47.22  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0022  Score=48.35  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=9.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -.|+|+|.+|+|||||++.|.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999987764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0049  Score=46.18  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      ..|+++|.+|+|||||++.+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0044  Score=47.45  Aligned_cols=21  Identities=33%  Similarity=0.629  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 043263           93 LIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      -.|+|+|.+|+|||||++.+.
T Consensus         3 iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999999984

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0024  Score=48.09  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+++|.+|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.005  Score=47.08  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.30  E-value=0.006  Score=49.82  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..+|+|.|..|.|||||++.+...
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999988654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0059  Score=46.19  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -.++++|.+|+|||||++.+.+-
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999987653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0055  Score=46.43  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.013  Score=47.97  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|+.++|.|++|+|||||+..++..
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            6999999999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.15  E-value=0.0061  Score=47.95  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 043263           93 LIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      ..|.|+|.+|+|||||++.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            458999999999999999885

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.011  Score=49.24  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .++.++||+|+|||.+++.|+..+
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            367899999999999999999865

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0066  Score=48.30  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+.|.||+|+||||++++++..+
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHh
Confidence            347899999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.007  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      -+.|.||+|+||||+++.++..+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHhc
Confidence            48899999999999999998764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0079  Score=48.52  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |.++.|.|++|+||||++-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            889999999999999999877653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.007  Score=49.07  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .|.++-|.|++||||||++-.++...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            38999999999999999998777543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.70  E-value=0.0094  Score=49.63  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .++.++||+|+|||.+++.|++..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHh
Confidence            345568999999999999999875

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.62  E-value=0.011  Score=48.81  Aligned_cols=21  Identities=29%  Similarity=0.571  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 043263           95 IVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++++|..+|||||+++.|.|.
T Consensus        27 ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTS
T ss_pred             EEEEeCCCCCHHHHHHHHhCC
Confidence            889999999999999999985

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.56  E-value=0.0099  Score=50.52  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhccC
Q 043263           94 IIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      -+.++||+|+|||-+++.|+.++.
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhcc
Confidence            388889999999999999998764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.53  E-value=0.01  Score=45.53  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      |||+|...+|||||++.|.+..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.53  E-value=0.011  Score=44.61  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .|+|+|..|+||||+++.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.011  Score=45.47  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .-+.|+|++|+|||+++.-|+..+
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            348999999999999999998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.45  E-value=0.012  Score=44.77  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|..|+|||||++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.31  E-value=0.013  Score=47.60  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|+|+|..|||||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4899999999999999998643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.29  E-value=0.013  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.154  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -|+|+|..++|||||+..|...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4999999999999999999754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.27  E-value=0.013  Score=47.55  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .-+.|+|++|+|||+++.-|+..+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            347899999999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.19  E-value=0.014  Score=45.58  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhcc
Q 043263           95 IVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.|.||+|||||-|++.++..+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.014  Score=49.36  Aligned_cols=21  Identities=52%  Similarity=0.681  Sum_probs=18.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKL  112 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L  112 (286)
                      +.++.|+||+|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            578999999999999987543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.06  E-value=0.017  Score=46.80  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|.++-|.|++||||||++-.++..
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHH
Confidence            4999999999999999998777654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.03  E-value=0.013  Score=48.12  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 043263           95 IVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ++++|.-+||||||++.|.|.
T Consensus        29 ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHhCC
Confidence            889999999999999999985

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.87  E-value=0.015  Score=47.37  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 043263           93 LIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      .-|+|+|..|||||||+..|.-
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3599999999999999998864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.78  E-value=0.014  Score=47.27  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .|.++-|.|++||||||++-.++...
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHH
Confidence            48999999999999999998887653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.62  E-value=0.019  Score=44.17  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +...++|.||+++|||+++..|++++.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhC
Confidence            468899999999999999999998864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.51  E-value=0.034  Score=44.98  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +-.++++|-+.+|||||++.|.+...
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccce
Confidence            66799999999999999999998643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.36  E-value=0.026  Score=45.75  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +|+.++|.|++|+|||||+..++..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999998888654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.27  E-value=0.015  Score=47.34  Aligned_cols=15  Identities=33%  Similarity=0.541  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 043263           95 IVISGPSGVGKDTVI  109 (286)
Q Consensus        95 i~l~G~sGsGKSTl~  109 (286)
                      +.|.|++||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.23  E-value=0.017  Score=47.56  Aligned_cols=15  Identities=33%  Similarity=0.636  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 043263           95 IVISGPSGVGKDTVI  109 (286)
Q Consensus        95 i~l~G~sGsGKSTl~  109 (286)
                      +.|.|+.||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            668899999999876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.22  E-value=0.024  Score=43.77  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           93 LIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      --|+|+|...+|||||++.|.+..
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhh
Confidence            349999999999999999998653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.91  E-value=0.04  Score=44.49  Aligned_cols=26  Identities=19%  Similarity=0.333  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      -.++.|.||.++||||+++.|..+++
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            67899999999999999999999874

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.75  E-value=0.035  Score=42.65  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      -|||+|-..+|||||++.|.+..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            49999999999999999997653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.028  Score=48.32  Aligned_cols=21  Identities=24%  Similarity=0.657  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 043263           93 LIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        93 ~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      .-+.|+|++|||||++++.|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            458999999999999987554

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.33  E-value=0.043  Score=39.04  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      .-+...|.+|.|||||+++-.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            35778899999999999875444

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.51  E-value=0.076  Score=38.25  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             CeEEEEEcCCCCCHHH-HHHHHHh
Q 043263           92 PLIIVISGPSGVGKDT-VIKKLRE  114 (286)
Q Consensus        92 g~ii~l~G~sGsGKST-l~~~L~~  114 (286)
                      |.+-.|+||-.||||| |++.+..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            6788999999999999 6666544

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.48  E-value=0.057  Score=49.54  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+.|.|.|.||||||+-++.+...+
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999887754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.33  E-value=0.067  Score=41.01  Aligned_cols=25  Identities=24%  Similarity=0.133  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.-+.+.||+|+||||++..|+...
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6779999999999999999998754

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.27  E-value=0.024  Score=40.10  Aligned_cols=19  Identities=21%  Similarity=0.298  Sum_probs=16.9

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVI  109 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~  109 (286)
                      +|+.+.|.+|.|||||+.+
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            5899999999999999665

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.22  E-value=0.057  Score=42.95  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      ..-|.|.|+.|+||+++++.|-..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHh
Confidence            344899999999999999999764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.03  E-value=0.047  Score=46.51  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 043263           95 IVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~  115 (286)
                      +.|+|++|+|||+++.-|+..
T Consensus        46 ~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHH
Confidence            689999999999999888764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.02  E-value=0.067  Score=49.24  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+.|.|.|.||||||+-++.+...+
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            36899999999999999999998764

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.96  E-value=0.068  Score=49.21  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+.|.|.|.||||||+-+|.+...+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.85  E-value=0.064  Score=41.87  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -|+++|-.++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            389999999999999988864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.43  E-value=0.084  Score=41.22  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .++++|-..+|||||+..|....
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHc
Confidence            37999999999999999997543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.35  E-value=0.076  Score=49.53  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      .+.|.|.|.||||||+-++.+...+
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999888765

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.096  Score=37.36  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|.+..|+||-.|||||-+=....
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHH
Confidence            489999999999999996644433

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.13  Score=39.08  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++|+|+|-+  ||||+..+|...+.
T Consensus         2 ~kvI~VTGTn--GKTTt~~mi~~iL~   25 (214)
T d1gg4a4           2 ARVVALTGSS--GKTSVKEMTAAILS   25 (214)
T ss_dssp             CEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCC--cHHHHHHHHHHHHH
Confidence            6899999999  89999999998875

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.98  E-value=0.093  Score=48.46  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.+.|.|.|.||||||+.++.+...+
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.80  E-value=0.079  Score=42.83  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      +|+.++|.|++|+|||+++..+..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHh
Confidence            599999999999999999976553

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=0.091  Score=41.49  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhc
Q 043263           94 IIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      -|+++|-.++|||||+..|.-.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5999999999999999888643

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.63  E-value=0.089  Score=49.00  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+.|.|.|.||||||.-++.+...+.
T Consensus       121 nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         121 NQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998887653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.49  E-value=0.081  Score=42.95  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      +|+.++|.|++|+|||+++..+.
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHH
Confidence            69999999999999999987665

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.40  E-value=0.11  Score=39.66  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.1

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHhccC
Q 043263           93 LIIVISGPS-GVGKDTVIKKLRESRD  117 (286)
Q Consensus        93 ~ii~l~G~s-GsGKSTl~~~L~~~~~  117 (286)
                      +.+.|+|-. |+||||++-.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            568899996 9999999988887664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.39  E-value=0.079  Score=44.25  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 043263           94 IIVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~  114 (286)
                      -|+|+|..|+|||||+..|..
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            399999999999999999864

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.11  Score=42.61  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVI  109 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~  109 (286)
                      +|.+-.+.|.||+|||||.
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4788899999999999976

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.72  E-value=0.17  Score=38.94  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             CeEEEEE-cCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVIS-GPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~-G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++|+++ |.-|+||||++-.|+..+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la   27 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALA   27 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHH
Confidence            3678887 7788999999998887654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.33  E-value=0.19  Score=38.71  Aligned_cols=26  Identities=38%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             CeEEEEE-cCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVIS-GPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~-G~sGsGKSTl~~~L~~~~~  117 (286)
                      |++|+++ +.-|+||||++--|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            5788888 6688999999988887654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.31  E-value=0.17  Score=40.16  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +++|+|.|.=|+||||++-.|+..+.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence            46899999999999999988876554

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.25  E-value=0.099  Score=41.42  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhc
Q 043263           95 IVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~~  115 (286)
                      |+|+|-.++|||||+..|...
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~   47 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFL   47 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHH
Confidence            999999999999999988643

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.07  E-value=0.12  Score=42.51  Aligned_cols=19  Identities=37%  Similarity=0.433  Sum_probs=16.9

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVI  109 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~  109 (286)
                      .|.+-.+.|.||+|||||.
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            3788999999999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.95  E-value=0.14  Score=42.05  Aligned_cols=19  Identities=37%  Similarity=0.433  Sum_probs=17.3

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 043263           91 NPLIIVISGPSGVGKDTVI  109 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~  109 (286)
                      .|.+-.+.|.||+|||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4788889999999999998

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.74  E-value=0.18  Score=37.81  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhcc
Q 043263           94 IIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        94 ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ++.|+|++.||||..+..|+...
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC
T ss_pred             CEEEECCCCccHHHHHHHHHhcC
Confidence            47899999999999999887543

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.34  E-value=0.23  Score=37.76  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      .+++||+|-+  ||||+..+|...+.
T Consensus        14 ~~~iAITGTn--GKTTt~~~l~~iL~   37 (207)
T d1j6ua3          14 KEEFAVTGTD--GKTTTTAMVAHVLK   37 (207)
T ss_dssp             CCEEEEECSS--SHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHHHHH
Confidence            7899999998  89999999987764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.83  E-value=0.13  Score=39.14  Aligned_cols=19  Identities=16%  Similarity=0.333  Sum_probs=15.7

Q ss_pred             CeEEEEEcCCCCCHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIK  110 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~  110 (286)
                      |.-+.|.+|.|||||+++-
T Consensus        40 ~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHH
Confidence            4557899999999998763

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.83  E-value=0.29  Score=36.68  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=15.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 043263           95 IVISGPSGVGKDTVIKKLRE  114 (286)
Q Consensus        95 i~l~G~sGsGKSTl~~~L~~  114 (286)
                      +.|++|.|||||.++-+++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            45779999999987666654

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.81  E-value=0.41  Score=34.27  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhc
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRES  115 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~  115 (286)
                      .|.+-.|+||-.|||||-+=.....
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHH
Confidence            5899999999999999976444433

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.79  E-value=0.21  Score=40.15  Aligned_cols=17  Identities=18%  Similarity=0.350  Sum_probs=15.9

Q ss_pred             CCeEEEEEcCCCCCHHH
Q 043263           91 NPLIIVISGPSGVGKDT  107 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKST  107 (286)
                      +|+.+.|.+|.|||||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            58999999999999997

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.16  E-value=0.32  Score=38.75  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +.++.+.|.=|+||||++-.|+..+
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHH
Confidence            5788899999999999888887655

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.94  E-value=0.39  Score=38.05  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      ..+|++.|.=|+||||++-.|+..+
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999987776554

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.65  E-value=0.18  Score=39.29  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=18.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 043263           92 PLIIVISGPSGVGKDTVIKKLR  113 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~  113 (286)
                      |+-+.+++|.|||||++.-+.+
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHH
Confidence            7778999999999998765544

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.38  Score=36.17  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           91 NPLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        91 ~g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      +..+|+|+|-+  ||||+..+|...+.
T Consensus        10 ~~~vI~VTGT~--GKTTt~~~l~~iL~   34 (204)
T d2jfga3          10 QAPIVAITGSN--GKSTVTTLVGEMAK   34 (204)
T ss_dssp             CSCEEEEECSS--SHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC--CHHHHHHHHHHHHH
Confidence            36799999998  89999999988764

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=0.54  Score=35.94  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      -.+|+|+|-+  ||||+..+|...+.
T Consensus         5 ~~vI~ITGT~--GKTTt~~~l~~iL~   28 (234)
T d1e8ca3           5 LRLVGVTGTN--GKTTTTQLLAQWSQ   28 (234)
T ss_dssp             SEEEEEESSS--CHHHHHHHHHHHHH
T ss_pred             CeEEEEECCC--cHHHHHHHHHHHHH
Confidence            5789999998  89999999988764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.53  E-value=0.49  Score=37.78  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhcc
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESR  116 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~  116 (286)
                      +++|+|.|.=|.||||++--|+..+
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999887776543

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.26  E-value=0.53  Score=35.69  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhccC
Q 043263           92 PLIIVISGPSGVGKDTVIKKLRESRD  117 (286)
Q Consensus        92 g~ii~l~G~sGsGKSTl~~~L~~~~~  117 (286)
                      ..+|||+|-+  ||||+..+|...+.
T Consensus        12 ~~~I~ITGTn--GKTTt~~~l~~iL~   35 (215)
T d1p3da3          12 RHGIAVAGTH--GKTTTTAMISMIYT   35 (215)
T ss_dssp             SEEEEEESSS--CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHHHHH
Confidence            4689999987  89999999987653