Citrus Sinensis ID: 043284
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FFE3 | 535 | Pentatricopeptide repeat- | yes | no | 0.937 | 0.923 | 0.680 | 0.0 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.899 | 0.628 | 0.296 | 2e-59 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.815 | 0.563 | 0.279 | 2e-55 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.880 | 0.703 | 0.283 | 3e-55 | |
| Q9FNL2 | 472 | Pentatricopeptide repeat- | no | no | 0.817 | 0.913 | 0.272 | 2e-54 | |
| Q9SS81 | 687 | Pentatricopeptide repeat- | no | no | 0.908 | 0.697 | 0.282 | 5e-54 | |
| Q9M302 | 659 | Pentatricopeptide repeat- | no | no | 0.793 | 0.634 | 0.301 | 6e-53 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.747 | 0.658 | 0.29 | 4e-52 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.624 | 0.518 | 0.317 | 3e-50 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.624 | 0.588 | 0.323 | 1e-49 |
| >sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/495 (68%), Positives = 411/495 (83%), Gaps = 1/495 (0%)
Query: 30 TVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA 89
T PPIKPWPQRL+PKRLVSMI +QQN+DLALQIF YAGK HP F+HNYDTYHSI+ KL+
Sbjct: 35 TEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLS 94
Query: 90 RARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS 148
RARAFD VESL+ +L+ + P IKCGENLFI ++RNYGLAGR E +++ FLRI F V+RS
Sbjct: 95 RARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRS 154
Query: 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208
VRSLNTLLN L+QN+R+DLVH MFKNS+ F + PN+FTCN+L+KALCKK+D+E A +VL
Sbjct: 155 VRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVL 214
Query: 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268
DE+PSMG+VPNLVT+TTILGGYV RGD+E+AKRV ++LDRGW PDATTYTVLMDGY KL
Sbjct: 215 DEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKL 274
Query: 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC 328
GR ++A VMD+ME N +EPNEVTYGVMI A CK KKSGEARN+ D+ML+R ++P S+LC
Sbjct: 275 GRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLC 334
Query: 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388
CKVID LCE+ KV++AC LW+++L+ NCMPDNA+ ST+IHWLCKEG++ EA+KLFDEFE+
Sbjct: 335 CKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK 394
Query: 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448
GSIPSLLTYNTLIAGMCE ELTEAGRLWDDM E+ +PN FTYN+LI+G K GN KEG
Sbjct: 395 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEG 454
Query: 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508
+R+LEEML+ GCFPNKT+F +L EGL + G E + K+VSMA +G V+ +SW L +
Sbjct: 455 VRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKVDKESWELFLKKF 514
Query: 509 VSDLDSGAGALDELL 523
+LD G L ELL
Sbjct: 515 AGELDKGVLPLKELL 529
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/489 (29%), Positives = 261/489 (53%), Gaps = 15/489 (3%)
Query: 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELK 105
+L+ + Q + AL++F+ A K PNFS Y I+ +L R+ +FD ++ +L ++K
Sbjct: 52 KLLDSLRSQPDDSAALRLFNLASK-KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMK 110
Query: 106 QNPEIKCGENLFITVIRNYG-LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164
+ + G + F+ +I +Y + E+ I++F ++ N +LN LV
Sbjct: 111 SS-RCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNS 169
Query: 165 YDLVHLMFKNSRHKFKV---VPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV 221
LV + S K V P+V T N+LIKALC+ + AI +L++MPS G+VP+
Sbjct: 170 LKLVEI----SHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEK 225
Query: 222 THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281
T TT++ GY+ GD++ A R+ +++ G + V++ G+ K GR+ DA+ + EM
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 282 ED-NGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGK 340
+ +G P++ T+ ++ CK A ++D MLQ Y P VI LC+ G+
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345
Query: 341 VEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNT 399
V++A E+ +++ ++C P+ +T+I LCKE ++ EA +L +G +P + T+N+
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 405
Query: 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459
LI G+C + A L+++M KG EP+ FTYNMLI C G E + +L++M G
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 460 CFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG-SVESDSWNFLLTRIVSD--LDSGA 516
C + +++ LI+G ++ E ++ G S S ++N L+ + ++ A
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525
Query: 517 GALDELLVK 525
+D+++++
Sbjct: 526 QLMDQMIME 534
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 238/468 (50%), Gaps = 38/468 (8%)
Query: 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLL 101
L PK + ++I Q++ AL++F+ K F H TY S+I KL F+A+E +L
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRK-EVGFKHTLSTYRSVIEKLGYYGKFEAMEEVL 63
Query: 102 TELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161
++++N E +++ ++NYG G+ + AV F R++ ++ + +V S N +++ LV
Sbjct: 64 VDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD 123
Query: 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV 221
+ +D H ++ R + + P+V++ I +K+ CK A+R+L+ M S G N+V
Sbjct: 124 SGYFDQAHKVYMRMRDR-GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVV 182
Query: 222 THTTILGGYVW-----------------------------------RGDIENAKRVFGDI 246
+ T++GG+ +GD++ +++ +
Sbjct: 183 AYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKV 242
Query: 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKS 306
+ RG +P+ TY + + G + G L AV+++ + + G +P+ +TY +I CK K
Sbjct: 243 IKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKF 302
Query: 307 GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI 366
EA L M+ P S +I C+ G V+ A + + +PD ++
Sbjct: 303 QEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Query: 367 IHWLCKEGKIWEAKKLFDE-FERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGV 425
I LC EG+ A LF+E +G P+++ YNTLI G+ + EA +L ++M EKG+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422
Query: 426 EPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEG 473
P V T+N+L+ G CK+G + +++ M+ KG FP+ +F++LI G
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 145/512 (28%), Positives = 249/512 (48%), Gaps = 48/512 (9%)
Query: 62 QIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121
++F A K +F T S+I A + FD+VE LL+ ++ + E FI V
Sbjct: 62 KMFKSAPKMG-SFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVII-ERSFIVVF 119
Query: 122 RNYGLAGRPELAVKTFLR-IEKFNVQRSVRSLNTLLNALVQNKRYDL---VHLMFKNSRH 177
R YG A P+ AV F R +++F +RSV+S N++LN ++ Y + NS
Sbjct: 120 RAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNM 179
Query: 178 KFKVVPNVFTCNILIKALCK-----------------------------------KDDVE 202
+ PN + N++IKALCK ++ ++
Sbjct: 180 NMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERID 239
Query: 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLM 262
A+ +LDEM S G P+ V + ++ G +GD+ ++ ++ +G VP+ TY L+
Sbjct: 240 EAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLI 299
Query: 263 DGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV 322
G G+L AV +++ M + PN+VTYG +I K +++ +A LL M +R Y
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYH 359
Query: 323 PSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382
+ + +I L +EGK E+A LW+++ K C P+ + S ++ LC+EGK EAK++
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEI 419
Query: 383 FDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441
+ G +P+ TY++L+ G ++ EA ++W +M + G N F Y++LI G C
Sbjct: 420 LNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCG 479
Query: 442 IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESD-- 499
+G KE + + +ML G P+ ++S +I+GL G+ K+ +S
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPD 539
Query: 500 --SWNFLLTRIV--SDLDSGAGALDELLVKNC 527
++N LL + D+ L+ +L + C
Sbjct: 540 VVTYNILLDGLCMQKDISRAVDLLNSMLDRGC 571
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 238/444 (53%), Gaps = 13/444 (2%)
Query: 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPN-FSHNYDTYHSIIHKLARARAFDA 96
W + + P +++ ++ +++++ ++ +F A + N + H+ ++ ++ +L A F A
Sbjct: 10 WSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKA 69
Query: 97 VESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156
E L+ +K + E++ +++ R YG RP +++ F +++ F+ S ++ T+L
Sbjct: 70 AEDLIVRMKIENCV-VSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVL 128
Query: 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD-DVEGAIRVLDEMPSMG 215
LV+ + +L +KN R + + P V + N+LIKALC+ D V+ +++ EMP G
Sbjct: 129 AILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187
Query: 216 MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275
P+ T+ T++ G G I+ AK++F +++++ P TYT L++G + +A+
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAM 247
Query: 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335
+ ++EM+ G+EPN TY +++ CK +S +A L + M+ R P+ +I L
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Query: 336 CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI-PSL 394
C+E K+++A EL R+ + PD + +I C K EA DE G I P+
Sbjct: 308 CKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNR 367
Query: 395 LTYNT-------LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE 447
LT+N ++ G+C + + A L+ M +G+ V T L++ CK G ++
Sbjct: 368 LTWNIHVKTSNEVVRGLCANYP-SRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQK 426
Query: 448 GIRILEEMLDKGCFPNKTSFSLLI 471
+++++E++ GC P+K ++ LLI
Sbjct: 427 AVQLVDEIVTDGCIPSKGTWKLLI 450
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 137/485 (28%), Positives = 250/485 (51%), Gaps = 6/485 (1%)
Query: 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAV 97
+P+ L PK ++ ++ ++N A +F A + HP ++H+ YH I+ +L+ R + V
Sbjct: 4 FPKSLSPKHVLKLLKSEKNPRAAFALFDSATR-HPGYAHSAVVYHHILRRLSETRMVNHV 62
Query: 98 ESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI-EKFNVQRSVRSLNTLL 156
S + EL ++ E KC E++ ++VI+ YG P+ A+ F R+ E F + ++RS NTLL
Sbjct: 63 -SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLL 121
Query: 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM 216
NA V+ K++ V +F V PN+ T N+LIK CKK + E A LD M G
Sbjct: 122 NAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGF 180
Query: 217 VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276
P++ +++T++ G +++A +F ++ +RG PD T Y +L+DG++K A++
Sbjct: 181 KPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAME 240
Query: 277 VMDEM-EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335
+ D + ED+ V PN T+ +MI K + + + + M Q + +I L
Sbjct: 241 LWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGL 300
Query: 336 CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395
C+ G V+ A ++ L + D +T++ C+ GKI E+ +L+ E + +++
Sbjct: 301 CDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIV 360
Query: 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455
+YN LI G+ E+ ++ EA +W M KG + TY + I G C G + + +++E+
Sbjct: 361 SYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEV 420
Query: 456 LDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG-SVESDSWNFLLTRIVSDLDS 514
G + +++ +I+ L + E +V + G + S N L+ ++ D
Sbjct: 421 ESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRL 480
Query: 515 GAGAL 519
G +
Sbjct: 481 GEASF 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 222/431 (51%), Gaps = 13/431 (3%)
Query: 52 FRQQN-LDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110
RQ++ + LAL F + F H T+ +I KLA D+V+ LL ++K
Sbjct: 50 LRQESCVPLALHFFKSIANSNL-FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQG-F 107
Query: 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170
C E+LFI+VI Y G E AV+ F RI++F SV+ N +L+ L+ R ++++
Sbjct: 108 HCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYM 167
Query: 171 MFKN-SRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGG 229
++++ R F+ PNVFT N+L+KALCK + V+GA ++L EM + G P+ V++TT++
Sbjct: 168 VYRDMKRDGFE--PNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISS 225
Query: 230 YVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN 289
G ++ + L + P + Y L++G K A ++M EM + G+ PN
Sbjct: 226 MCEVGLVKEGRE-----LAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPN 280
Query: 290 EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWK 349
++Y +I C + A + L ML+R P+ ++ G DA +LW
Sbjct: 281 VISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWN 340
Query: 350 RLLRKNCMPDNAIS-STIIHWLCKEGKIWEAKKLFDEFER-GSIPSLLTYNTLIAGMCES 407
+++R + N ++ +T++ C G I +A +F E G P++ TY +LI G +
Sbjct: 341 QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKR 400
Query: 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSF 467
L A +W+ M+ G PNV Y +++ C+ KE ++E M + C P+ +F
Sbjct: 401 GSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTF 460
Query: 468 SLLIEGLYESG 478
+ I+GL ++G
Sbjct: 461 NAFIKGLCDAG 471
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 211/400 (52%), Gaps = 6/400 (1%)
Query: 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLR 139
TY+ +I +A + S+L + +P++ + T++R+ +G+ + A++ R
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVV----TYNTILRSLCDSGKLKQAMEVLDR 229
Query: 140 IEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199
+ + + V + L+ A ++ + R + P+V T N+L+ +CK+
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR-GCTPDVVTYNVLVNGICKEG 288
Query: 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT 259
++ AI+ L++MPS G PN++TH IL G +A+++ D+L +G+ P T+
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348
Query: 260 VLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319
+L++ + G L A+ ++++M +G +PN ++Y ++ FCK KK A L+ M+ R
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEA 379
P ++ LC++GKVEDA E+ +L K C P +T+I L K GK +A
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468
Query: 380 KKLFDEFERGSI-PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQG 438
KL DE + P +TY++L+ G+ ++ EA + + + G+ PN T+N ++ G
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Query: 439 FCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESG 478
CK I L M+++GC PN+TS+++LIEGL G
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 186/331 (56%), Gaps = 2/331 (0%)
Query: 148 SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV 207
S+ N LL+A+ + K++D+V + + ++V ++T NILI C++ + A+ +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVV-ISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 208 LDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267
L +M +G P++VT +++L GY I +A + +++ G+ PD T+T L+ G
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327
+ ++AV ++D M G +PN VTYGV++ CK + A NLL+ M K +
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF-DEF 386
+ID LC+ V+DA L+K + K P+ S++I LC G+ +A +L D
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 387 ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAK 446
E+ P+L+T+N LI + + EA +L+DDM+++ ++P++FTYN L+ GFC
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYES 477
+ ++ E M+ K CFP+ +++ LI+G +S
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS 413
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 183/331 (55%), Gaps = 2/331 (0%)
Query: 148 SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV 207
S+ N LL+A+ + K++DLV + + + N++T NILI C++ + A+ +
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLV-ISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 208 LDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267
L +M +G P++VT +++L GY I +A + +++ G+ PD T+T L+ G
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327
+ ++AV ++D M G +PN VTYGV++ CK A NLL+ M K +
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF-DEF 386
+ID LC+ V+DA L+K + K P+ S++I LC G+ +A +L D
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 387 ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAK 446
E+ P+L+T+N LI + + EA +L DDM+++ ++P++FTYN LI GFC
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYES 477
+ ++ E M+ K CFP+ +++ LI+G +S
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKS 338
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | ||||||
| 255564599 | 544 | pentatricopeptide repeat-containing prot | 0.986 | 0.955 | 0.725 | 0.0 | |
| 224118166 | 498 | predicted protein [Populus trichocarpa] | 0.941 | 0.995 | 0.722 | 0.0 | |
| 225450630 | 586 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.870 | 0.693 | 0.0 | |
| 147821100 | 844 | hypothetical protein VITISV_038268 [Viti | 0.956 | 0.597 | 0.699 | 0.0 | |
| 449455956 | 535 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 0.951 | 0.676 | 0.0 | |
| 15237345 | 535 | pentatricopeptide repeat-containing prot | 0.937 | 0.923 | 0.680 | 0.0 | |
| 297807667 | 533 | pentatricopeptide repeat-containing prot | 0.937 | 0.926 | 0.676 | 0.0 | |
| 357505557 | 647 | Pentatricopeptide repeat-containing prot | 0.990 | 0.806 | 0.580 | 1e-179 | |
| 356523145 | 529 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.922 | 0.556 | 1e-165 | |
| 357486943 | 733 | Pentatricopeptide repeat-containing prot | 0.614 | 0.442 | 0.577 | 1e-115 |
| >gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/524 (72%), Positives = 448/524 (85%), Gaps = 4/524 (0%)
Query: 6 HQKITAPSCLLQS--IGGARCSL-STITVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQ 62
H+ T LL S G L + TVTPPIKPWPQRLYPKRLVSMI RQQNLDLALQ
Sbjct: 20 HRPKTTAVALLHSNSTGSPNNPLPESYTVTPPIKPWPQRLYPKRLVSMITRQQNLDLALQ 79
Query: 63 IFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122
IF YAGK+ PNFSHNYDTY SIIHKL+RAR F VE LL++L ++ +IKCGEN+FI VIR
Sbjct: 80 IFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSDLHKS-QIKCGENIFINVIR 138
Query: 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV 182
NYGLAG+P+ A++TF+RI+ FNVQRSVRSLNTLLNA VQNKRYDLVH MFKN R K+ V+
Sbjct: 139 NYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVL 198
Query: 183 PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRV 242
PNVFTCNILIKALCKK+DVE A++VLDEMP+MGM+PN+VT+TTILGGY RGD+ NA +V
Sbjct: 199 PNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKV 258
Query: 243 FGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302
FG++ DRGW+PDATTYT+LM+GY + GRL DA+K+MD+M +NGVEPNEVTYGVM+EA+CK
Sbjct: 259 FGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCK 318
Query: 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362
KK+GEARNLLDDML+R+YVPSSALCCKVID+LCE GK+E+ACELWKR+L+KNCMPDNAI
Sbjct: 319 EKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAI 378
Query: 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE 422
ST+IHWLCKEGK+WEA+KLF EFERG+IPSLLTYNTLIAGMCE EL+EAG+LWDDM+E
Sbjct: 379 MSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMME 438
Query: 423 KGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGE 482
KG +PN FTYNMLI+GF KIGNAKEGIRILEEMLD C PNK+++++LIE L + G EGE
Sbjct: 439 KGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCKMGMEGE 498
Query: 483 VGKVVSMATASGSVESDSWNFLLTRIVSDLDSGAGALDELLVKN 526
V KVVSMA ASG V+SDSW+ L + V +LD G+ ALD +N
Sbjct: 499 VDKVVSMAMASGGVDSDSWDLFLNKAVGNLDRGSKALDSFFKEN 542
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa] gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/498 (72%), Positives = 427/498 (85%), Gaps = 2/498 (0%)
Query: 30 TVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA 89
TVTPPIKPWPQRLYPKRL+SMI Q+NLDLA QIF YAGK+HP FSH YDTYHSII KL+
Sbjct: 1 TVTPPIKPWPQRLYPKRLISMITHQENLDLAFQIFDYAGKYHPGFSHTYDTYHSIIDKLS 60
Query: 90 RARAFDAVESLLTELKQNP-EIKCGENLFITVIRNYGLAGRPELAVKTFLRI-EKFNVQR 147
RARAFD VESLL++L +N IKCG+++FI+VIRNYGLAGRP LA+KTF RI E+F++Q
Sbjct: 61 RARAFDGVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQP 120
Query: 148 SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV 207
SV+ LNTLLN VQNKRY LV KN + K+ V+PNVF+ NILIKALCKK+DVE A++V
Sbjct: 121 SVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKV 180
Query: 208 LDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267
DEMP+MGM+PNLVT+TTILGG+V RGD+ NA++VF +I D+GW+PDATTYTVLM GY K
Sbjct: 181 FDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCK 240
Query: 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327
GRL+DA+KVMD ME NGVEPNEVTYGVMI+A+CK KKSGEARNL+DDML +K++PSS L
Sbjct: 241 QGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTL 300
Query: 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFE 387
CCKVID+LCE+GKVE+AC LWKR+L KNC+PDNAI ST+IHWLCKEGK+WEA+KLFDEFE
Sbjct: 301 CCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFE 360
Query: 388 RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE 447
+G+IPSL+TYNTLIAGMCE EL EAGRLWDDMVEK PN FTYNMLI+GF K G KE
Sbjct: 361 QGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKE 420
Query: 448 GIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR 507
G+RILEEMLD GC PNK++++LLIEGL ESG EG+V KV+SMA AS V++DSW+ L +
Sbjct: 421 GVRILEEMLDNGCLPNKSTYTLLIEGLQESGMEGDVDKVMSMAMASREVDADSWDLFLHK 480
Query: 508 IVSDLDSGAGALDELLVK 525
IV +LD G GALD LL++
Sbjct: 481 IVGNLDCGTGALDRLLME 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Vitis vinifera] gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/513 (69%), Positives = 437/513 (85%), Gaps = 3/513 (0%)
Query: 16 LQSIGGARCSLSTITVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFS 75
L ++ L + TVTPPIKPWPQRL PKR+VSMI RQQNLDLALQIF +AGKFH NF+
Sbjct: 73 LAAVDSKSTLLKSYTVTPPIKPWPQRLSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFA 132
Query: 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVK 135
HNY+TY ++I KL++ARAF+ +E+L+++L ++ +IKCGENLFITVIRNYG AGRP+LA++
Sbjct: 133 HNYETYLAMIEKLSKARAFEPMETLISQLHKS-QIKCGENLFITVIRNYGFAGRPKLAIR 191
Query: 136 TFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195
TFLRI F +Q SVRS NTLLN LVQNKR+DLVHLMFKN R KF +VPNVFTCNIL+KAL
Sbjct: 192 TFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKAL 251
Query: 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA 255
CKK+D++ AIRVL+EMP+MG +PN+VT+TTILGGYV +GD+ A+RVFG+ILDRGWVPD
Sbjct: 252 CKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDP 311
Query: 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315
TTYT+LMDGY K GR DAVKVMDEME+N VEPN+VTYGV+IEA+CK KKSGE NLLDD
Sbjct: 312 TTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDD 371
Query: 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK 375
ML++KY+PSSALCC+VID+LCEEGKVE ACELWK+LL+KNC PDNAI+ST+IHWLCKEGK
Sbjct: 372 MLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGK 431
Query: 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435
+WEA+KLFDEFE+GSIPS LTYN LIAGMCE EL EA RLWD+MVEKG PN FTYNML
Sbjct: 432 VWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNML 491
Query: 436 IQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495
I+GFCK+GNA+EGIR++EEMLD GC PNK ++++L+EGLYE G EGEV V+SMA++ G
Sbjct: 492 IKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELGLEGEVTNVLSMASSRGG 551
Query: 496 VESDSWNFLLTRIVS--DLDSGAGALDELLVKN 526
V+++ W L + V+ ++D +D +LV++
Sbjct: 552 VDAECWGVFLAKFVNGGNIDVEGAKIDRILVES 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/505 (69%), Positives = 429/505 (84%), Gaps = 1/505 (0%)
Query: 16 LQSIGGARCSLSTITVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFS 75
L ++ L + TVTPPIKPWPQRL PKR+VSMI RQQNLDLALQIF +AGKFH NF+
Sbjct: 73 LAAVDSKSTLLKSYTVTPPIKPWPQRLSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFA 132
Query: 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVK 135
HNY+TY ++I KL++ARAF+ +E+L+++L ++ +IKCGENLFITVIRNYG AGRP+LA++
Sbjct: 133 HNYETYLAMIEKLSKARAFEPMETLISQLHKS-QIKCGENLFITVIRNYGFAGRPKLAIR 191
Query: 136 TFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195
TFLRI F +Q SVRS NTLLN LVQNKR+DLVHLMFKN R KF +VPNVFTCNIL+KAL
Sbjct: 192 TFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKAL 251
Query: 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA 255
CKK+D++ AIRVL+EMP+MG +PN+VT+TTILGGYV +GD+ A+RVFG+ILDRGWVPD
Sbjct: 252 CKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDP 311
Query: 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315
TTYT+LMDGY K GR DAVKVMDEME+N VEPN+VTYGV+IEA+CK KKSGE NLLDD
Sbjct: 312 TTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDD 371
Query: 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK 375
ML++KY+PSSALCC+VID+LCEEGKVE ACELWK+LL+KNC PDNAI+ST+IHWLCKEGK
Sbjct: 372 MLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGK 431
Query: 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435
+WEA+KLFDEFE+GSIPS LTYN LIAGMCE EL EA RLWD+MVEKG PN FTYNML
Sbjct: 432 VWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNML 491
Query: 436 IQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495
I+GFCK+GNA+EGIR++EEMLD GC PNK ++++L+EGLYE G EGEV V+SMA++ G
Sbjct: 492 IKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELGLEGEVTNVLSMASSRGG 551
Query: 496 VESDSWNFLLTRIVSDLDSGAGALD 520
V+++ W L + L G ++
Sbjct: 552 VDAECWGVFLAKTSQVLVVGGTCVN 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like [Cucumis sativus] gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/510 (67%), Positives = 432/510 (84%), Gaps = 1/510 (0%)
Query: 16 LQSIGGARCSLSTITVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFS 75
L+ I L + TVTPPIKPWPQRL+P RLV+MI RQQNLDLALQIFHYAGK+HP F+
Sbjct: 24 LRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFT 83
Query: 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVK 135
HNYDTYH+II++L+RARAF+ VESLL EL Q+ I C E+LFITVIR+YGLA RP++A+K
Sbjct: 84 HNYDTYHAIIYRLSRARAFEPVESLLLEL-QDSGINCSEDLFITVIRSYGLASRPKMALK 142
Query: 136 TFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195
TFLRI+ F V+RSVRSLNTLLNALVQN R+ VHL+FK S+ KF VVPNVFTCNILIKAL
Sbjct: 143 TFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKAL 202
Query: 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA 255
CKK+DVEGA +V DEMPSMG+VPN+VT+TTILGGYV RGD+ AKRVFG++ D GW+PDA
Sbjct: 203 CKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDA 262
Query: 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315
TTYT+LMDGY+K GR TDAVKVMDEME+NGVEPN++TYGV+I +CK +KSGEA NLL+D
Sbjct: 263 TTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLND 322
Query: 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK 375
ML++KY+P+SALCCKVID+LC EG+V++AC++W++LL+KNC PDNAI+ST+IHWLCKEG
Sbjct: 323 MLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGN 382
Query: 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435
IWEA+KLF+EFERG+I SLLTYNTLIAGMCE EL EA RLWDDM+EKG PN FTYNML
Sbjct: 383 IWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNML 442
Query: 436 IQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495
I+GF K+G AKE I+++EEMLDKGC N++++ +L+EGL + G E+ ++SM +SG+
Sbjct: 443 IKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNILSMIISSGA 502
Query: 496 VESDSWNFLLTRIVSDLDSGAGALDELLVK 525
V+ +WN + VS+++ A L+++L++
Sbjct: 503 VDFKAWNLFVPHFVSNVNEQANILEKILIE 532
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16420, mitochondrial; Flags: Precursor gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana] gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/495 (68%), Positives = 411/495 (83%), Gaps = 1/495 (0%)
Query: 30 TVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA 89
T PPIKPWPQRL+PKRLVSMI +QQN+DLALQIF YAGK HP F+HNYDTYHSI+ KL+
Sbjct: 35 TEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLS 94
Query: 90 RARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS 148
RARAFD VESL+ +L+ + P IKCGENLFI ++RNYGLAGR E +++ FLRI F V+RS
Sbjct: 95 RARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRS 154
Query: 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208
VRSLNTLLN L+QN+R+DLVH MFKNS+ F + PN+FTCN+L+KALCKK+D+E A +VL
Sbjct: 155 VRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVL 214
Query: 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268
DE+PSMG+VPNLVT+TTILGGYV RGD+E+AKRV ++LDRGW PDATTYTVLMDGY KL
Sbjct: 215 DEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKL 274
Query: 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC 328
GR ++A VMD+ME N +EPNEVTYGVMI A CK KKSGEARN+ D+ML+R ++P S+LC
Sbjct: 275 GRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLC 334
Query: 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388
CKVID LCE+ KV++AC LW+++L+ NCMPDNA+ ST+IHWLCKEG++ EA+KLFDEFE+
Sbjct: 335 CKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK 394
Query: 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448
GSIPSLLTYNTLIAGMCE ELTEAGRLWDDM E+ +PN FTYN+LI+G K GN KEG
Sbjct: 395 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEG 454
Query: 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508
+R+LEEML+ GCFPNKT+F +L EGL + G E + K+VSMA +G V+ +SW L +
Sbjct: 455 VRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKVDKESWELFLKKF 514
Query: 509 VSDLDSGAGALDELL 523
+LD G L ELL
Sbjct: 515 AGELDKGVLPLKELL 529
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/495 (67%), Positives = 410/495 (82%), Gaps = 1/495 (0%)
Query: 30 TVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA 89
T P IKPWPQRL+PKRLVSMI +QQN+DLALQIF YAGK HP F+HNYDTYHSI+ KL+
Sbjct: 33 TEKPTIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLS 92
Query: 90 RARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS 148
RARAFD VESL+ +L+ + P IKCGENLFI ++RNYGLAGR E +++ FLRI F V+RS
Sbjct: 93 RARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRS 152
Query: 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208
VRSLNTLLN L+QN+R+DLVH MFKNS+ F + PN+FTCN+L+KALCKK+D+E A +VL
Sbjct: 153 VRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVL 212
Query: 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268
DE+P+MG+VPNLVT+TTILGGYV RGD+E+AKRV ++LDRGW PDA TYTVLMDGY KL
Sbjct: 213 DEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKL 272
Query: 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC 328
GR ++A VMD+ME N +EPNEVTYGVMI A CK KKSGEARN+ D+ML R ++P S+LC
Sbjct: 273 GRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLC 332
Query: 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388
CKVID LCE+ KV++AC LW+++L+ NCMPDNA+ ST+IHWLCKEG++ EA+KLFDEF++
Sbjct: 333 CKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDK 392
Query: 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448
GSIPSLLTYNTLIAGMCE ELTEAGRLWDDM E+ +PN FTYN+LI+G K GN KEG
Sbjct: 393 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEG 452
Query: 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508
+R+LEEML+ GCFPNKT+F +L EGL + G E + K+VSMA +G V+ +SW L +
Sbjct: 453 VRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNGKVDKESWELFLNKF 512
Query: 509 VSDLDSGAGALDELL 523
V +LD G AL ELL
Sbjct: 513 VGELDKGVLALKELL 527
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 306/527 (58%), Positives = 400/527 (75%), Gaps = 5/527 (0%)
Query: 4 HLHQKITAPSCLLQSIGGARCSL-STITVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQ 62
H H+ TA S + + SL + + PPIKPWP RL PK L S+I RQ + +LQ
Sbjct: 8 HHHRFSTAISAAIVANTTTTPSLPQSYKIQPPIKPWPHRLNPKLLSSLISRQHDPHFSLQ 67
Query: 63 IFHYAGKFH-PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121
IF +A H P FSHN TY +I KL++ R F +ESLL L+ +P CGE +TVI
Sbjct: 68 IFLHAQNHHKPPFSHNPQTYQAIFLKLSKFRCFSEIESLLAGLRSSPPHCCGEEPIVTVI 127
Query: 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV 181
R YGLAG+P A+KTFLRIE F ++ SVRS+N LLN+LVQNKRY L L+FKN +F+V
Sbjct: 128 RGYGLAGKPVRALKTFLRIESFGIRPSVRSINALLNSLVQNKRYRLAFLVFKNCGERFRV 187
Query: 182 VPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKR 241
+PNV +CNIL+KALCK ++VE A++VLDEMP MG+VPN+V++TT+LGG+VWRGD++ A +
Sbjct: 188 LPNVVSCNILLKALCKGNEVEVAVKVLDEMPGMGLVPNVVSYTTVLGGFVWRGDMDGAMK 247
Query: 242 VFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFC 301
VF ++LDRGW PD T+YTVL+DG+ +LG+L DA++VMD MEDNGVEPNEVTYGVMI+A+C
Sbjct: 248 VFREVLDRGWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQAYC 307
Query: 302 KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA 361
K KKSGEA NL++DM+ + V S LCCKV+DLLCEEG VE ACE+W+ + RKNC + A
Sbjct: 308 KEKKSGEAVNLIEDMIAKDLVVGSELCCKVVDLLCEEGNVEKACEMWRMVSRKNCGLNGA 367
Query: 362 -ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDM 420
+ ST+IHWLCK+GK+ EA+ +FDEF +GS+ SLLTYNTLIAG+CE EL EA RLWDDM
Sbjct: 368 VVVSTLIHWLCKKGKVLEARNVFDEFGKGSVASLLTYNTLIAGLCEGGELCEAARLWDDM 427
Query: 421 VEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEG-LYESGN 479
VEKGV PN FTYNMLI+GFCK+GNAKEGIR+LEEML+ C PNK+++++LI+G L G
Sbjct: 428 VEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEMLENRCLPNKSTYTILIDGILLLGGM 487
Query: 480 EGEVGKVVSMATASGSVESDSWNFLLTRIVSDLDSGAGALDELLVKN 526
+ E+ KVVS+A ++G V++D WN + +V + + G LD +L++N
Sbjct: 488 KQEINKVVSLAMSTG-VDADLWNIFVKPVVGNDNGGEAELDRILLEN 533
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/501 (55%), Positives = 379/501 (75%), Gaps = 13/501 (2%)
Query: 27 STITVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIH 86
S+ + PPI PWP+RL P L S+I RQ + DL+LQIFH+A HP+ SH H++
Sbjct: 39 SSFRIQPPIYPWPRRLTPHNLASLISRQHDPDLSLQIFHHA---HPSLSHAPQPLHALFL 95
Query: 87 KLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQ 146
KL+RAR F +ESLLT L P T+IR YGLAG+P A++ FL+ + V
Sbjct: 96 KLSRARRFYHLESLLTHLPNPPPEP----PLTTLIRAYGLAGKPLSALRIFLKFQPLGV- 150
Query: 147 RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206
RSLN LLNALVQNKR+ L H +FK+S KF++VPNV +CNIL+KALCK+++V+ A+R
Sbjct: 151 ---RSLNALLNALVQNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVR 207
Query: 207 VLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYI 266
VLDEM MG+VPN+V+++T+LGG+V++GD+E+A RVFG+ILD+GW+PD T+YTVLM G+
Sbjct: 208 VLDEMSLMGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEILDKGWMPDVTSYTVLMSGFC 267
Query: 267 KLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA 326
+LG+L DA+++MD ME+N V+P+EVTYGVMIEA+CKG+K GEA NLL+DM+++ VPSS
Sbjct: 268 RLGKLVDAIRMMDLMEENRVQPSEVTYGVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSV 327
Query: 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386
LCCKV+DLLCEEG VE ACE+W+ ++RK A+ STI+HWLCKEGK+ EA+ + DE
Sbjct: 328 LCCKVVDLLCEEGSVERACEVWRGVVRKGWRVGGAVVSTIVHWLCKEGKVVEARGVLDEL 387
Query: 387 ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAK 446
E+G + SL+TYNTLIAGMCE +L EAGRLWD+MVEKG PN FTYN+L++GFCK+G+ K
Sbjct: 388 EKGEVASLMTYNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVK 447
Query: 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEG-EVGKVVSMATASGSVESDSWNFLL 505
E IR+LEEM++ GC PNK++FS+L++G+ SG + E+ KVV +A +G V+ + W+ L
Sbjct: 448 EAIRVLEEMVESGCLPNKSTFSILVDGISLSGGKKEEIDKVVLLAMTTG-VDGEWWDLFL 506
Query: 506 TRIVSDLDSGAGALDELLVKN 526
+V +LD A LD +L +N
Sbjct: 507 KLVVGNLDGNASELDRILTEN 527
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486943|ref|XP_003613759.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515094|gb|AES96717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/341 (57%), Positives = 266/341 (78%), Gaps = 17/341 (4%)
Query: 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDIL 247
CNIL+KALCK ++VE A++VLDEMP MG+VPN+V++TT+LGG+VWRGD++ A +VF ++L
Sbjct: 72 CNILLKALCKGNEVEVAVKVLDEMPGMGLVPNVVSYTTVLGGFVWRGDMDGAMKVFREVL 131
Query: 248 DRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSG 307
DRGW PD T+YTVL+DG+ +LG+L DA++VMD ME+NGVEPNE KSG
Sbjct: 132 DRGWSPDVTSYTVLVDGFCRLGKLVDAIRVMDVMEENGVEPNE--------------KSG 177
Query: 308 EARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS-STI 366
EA NL++DM+ + V S LCCKV+D+LCEEG VE ACE+W+ + RKNC + A+ ST+
Sbjct: 178 EAVNLIEDMIAKDLVVGSELCCKVVDVLCEEGNVEKACEVWRMVSRKNCGLNGAVVVSTL 237
Query: 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVE 426
HWLCK+GK+ EA+ +FDEF +G + SLLTYNTLIAG+CE +L EA RLWD+MVEKGV
Sbjct: 238 THWLCKKGKVLEARNMFDEFGKGLVASLLTYNTLIAGLCEGGKLCEAARLWDEMVEKGVA 297
Query: 427 PNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN-EGEVGK 485
PN FTYNMLI+GFCK+ NAKEGIR+LEEML+ CFPNK+++++LI+G+ SG + E+ K
Sbjct: 298 PNAFTYNMLIKGFCKVRNAKEGIRVLEEMLENRCFPNKSTYTILIDGILLSGGMKQEINK 357
Query: 486 VVSMATASGSVESDSWNFLLTRIVSDLDSGAGALDELLVKN 526
VVS+A ++G V++D WN + +V + D GA LD +L++N
Sbjct: 358 VVSLAMSTG-VDADLWNIFVKPVVGNDDGGAAELDRILLEN 397
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | ||||||
| TAIR|locus:2171352 | 535 | AT5G16420 "AT5G16420" [Arabido | 0.963 | 0.949 | 0.668 | 4.6e-192 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.903 | 0.631 | 0.293 | 1e-59 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.865 | 0.690 | 0.319 | 9.9e-55 | |
| TAIR|locus:2095309 | 687 | AT3G09060 "AT3G09060" [Arabido | 0.924 | 0.708 | 0.282 | 4.3e-54 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.853 | 0.589 | 0.279 | 3.8e-53 | |
| TAIR|locus:2161408 | 472 | AT5G46100 "AT5G46100" [Arabido | 0.815 | 0.911 | 0.274 | 6.3e-53 | |
| TAIR|locus:2099458 | 659 | AT3G48810 "AT3G48810" [Arabido | 0.791 | 0.632 | 0.302 | 4.4e-52 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.789 | 0.695 | 0.281 | 1.9e-51 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.688 | 0.572 | 0.307 | 1.2e-49 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.681 | 0.622 | 0.311 | 7.7e-48 |
| TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1861 (660.2 bits), Expect = 4.6e-192, P = 4.6e-192
Identities = 341/510 (66%), Positives = 416/510 (81%)
Query: 16 LQSIGGARCSLSTI-TVTPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNF 74
L S + SL T PPIKPWPQRL+PKRLVSMI +QQN+DLALQIF YAGK HP F
Sbjct: 20 LFSASASAASLQQYCTEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGF 79
Query: 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELA 133
+HNYDTYHSI+ KL+RARAFD VESL+ +L+ + P IKCGENLFI ++RNYGLAGR E +
Sbjct: 80 THNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESS 139
Query: 134 VKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193
++ FLRI F V+RSVRSLNTLLN L+QN+R+DLVH MFKNS+ F + PN+FTCN+L+K
Sbjct: 140 MRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVK 199
Query: 194 ALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP 253
ALCKK+D+E A +VLDE+PSMG+VPNLVT+TTILGGYV RGD+E+AKRV ++LDRGW P
Sbjct: 200 ALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYP 259
Query: 254 DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLL 313
DATTYTVLMDGY KLGR ++A VMD+ME N +EPNEVTYGVMI A CK KKSGEARN+
Sbjct: 260 DATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMF 319
Query: 314 DDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE 373
D+ML+R ++P S+LCCKVID LCE+ KV++AC LW+++L+ NCMPDNA+ ST+IHWLCKE
Sbjct: 320 DEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKE 379
Query: 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYN 433
G++ EA+KLFDEFE+GSIPSLLTYNTLIAGMCE ELTEAGRLWDDM E+ +PN FTYN
Sbjct: 380 GRVTEARKLFDEFEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYN 439
Query: 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATAS 493
+LI+G K GN KEG+R+LEEML+ GCFPNKT+F +L EGL + G E + K+VSMA +
Sbjct: 440 VLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMN 499
Query: 494 GSVESDSWNFLLTRIVSDLDSGAGALDELL 523
G V+ +SW L + +LD G L ELL
Sbjct: 500 GKVDKESWELFLKKFAGELDKGVLPLKELL 529
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 143/487 (29%), Positives = 263/487 (54%)
Query: 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELK 105
+L+ + Q + AL++F+ A K PNFS Y I+ +L R+ +FD ++ +L ++K
Sbjct: 52 KLLDSLRSQPDDSAALRLFNLASK-KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMK 110
Query: 106 QNPEIKCGENLFITVIRNYGLAGRPE--LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK 163
+ + G + F+ +I +Y + L+V ++ I++F ++ N +LN LV
Sbjct: 111 SS-RCEMGTSTFLILIESYAQFELQDEILSVVDWM-IDEFGLKPDTHFYNRMLNLLVDGN 168
Query: 164 RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTH 223
LV + + + P+V T N+LIKALC+ + AI +L++MPS G+VP+ T
Sbjct: 169 SLKLVEISHAKMS-VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTF 227
Query: 224 TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283
TT++ GY+ GD++ A R+ +++ G + V++ G+ K GR+ DA+ + EM +
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287
Query: 284 -NGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVE 342
+G P++ T+ ++ CK A ++D MLQ Y P VI LC+ G+V+
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVK 347
Query: 343 DACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLI 401
+A E+ +++ ++C P+ +T+I LCKE ++ EA +L +G +P + T+N+LI
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407
Query: 402 AGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF 461
G+C + A L+++M KG EP+ FTYNMLI C G E + +L++M GC
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASG-SVESDSWNFLLTRIVSD--LDSGAGA 518
+ +++ LI+G ++ E ++ G S S ++N L+ + ++ A
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 519 LDELLVK 525
+D+++++
Sbjct: 528 MDQMIME 534
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 149/467 (31%), Positives = 236/467 (50%)
Query: 62 QIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121
++F A K +F T S+I A + FD+VE LL+ ++ + E FI V
Sbjct: 62 KMFKSAPKMG-SFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVII-ERSFIVVF 119
Query: 122 RNYGLAGRPELAVKTFLR-IEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFK---NSRH 177
R YG A P+ AV F R +++F +RSV+S N++LN ++ Y + NS
Sbjct: 120 RAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNM 179
Query: 178 KFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237
+ PN + N++IKALCK V+ AI V MP +P+ T+ T++ G I+
Sbjct: 180 NMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERID 239
Query: 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMI 297
A + ++ G P Y VL+DG K G LT K++D M G PNEVTY +I
Sbjct: 240 EAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLI 299
Query: 298 EAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM 357
C K +A +LL+ M+ K +P+ +I+ L ++ + DA L + +
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYH 359
Query: 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRL 416
+ I S +I L KEGK EA L+ + E+G P+++ Y+ L+ G+C + EA +
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEI 419
Query: 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE 476
+ M+ G PN +TY+ L++GF K G +E +++ +EM GC NK +S+LI+GL
Sbjct: 420 LNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCG 479
Query: 477 SGNEGEVGKVVSMATASGSVESDSWNFLLTRIVSDLDSGAGALDELL 523
G E V S G ++ D+ + + I+ L G G++D L
Sbjct: 480 VGRVKEAMMVWSKMLTIG-IKPDTVAY--SSIIKGL-CGIGSMDAAL 522
|
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| TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 140/495 (28%), Positives = 254/495 (51%)
Query: 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAV 97
+P+ L PK ++ ++ ++N A +F A + HP ++H+ YH I+ +L+ R + V
Sbjct: 4 FPKSLSPKHVLKLLKSEKNPRAAFALFDSATR-HPGYAHSAVVYHHILRRLSETRMVNHV 62
Query: 98 ESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI-EKFNVQRSVRSLNTLL 156
S + EL ++ E KC E++ ++VI+ YG P+ A+ F R+ E F + ++RS NTLL
Sbjct: 63 -SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLL 121
Query: 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM 216
NA V+ K++ V +F V PN+ T N+LIK CKK + E A LD M G
Sbjct: 122 NAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGF 180
Query: 217 VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276
P++ +++T++ G +++A +F ++ +RG PD T Y +L+DG++K A++
Sbjct: 181 KPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAME 240
Query: 277 VMDEM-EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335
+ D + ED+ V PN T+ +MI K + + + + M Q + +I L
Sbjct: 241 LWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGL 300
Query: 336 CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395
C+ G V+ A ++ L + D +T++ C+ GKI E+ +L+ E + +++
Sbjct: 301 CDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIV 360
Query: 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455
+YN LI G+ E+ ++ EA +W M KG + TY + I G C G + + +++E+
Sbjct: 361 SYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEV 420
Query: 456 LDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG-SVESDSWNFLLTRIVSDLDS 514
G + +++ +I+ L + E +V + G + S N L+ ++ D
Sbjct: 421 ESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRL 480
Query: 515 GAGA--LDELLVKNC 527
G + L E+ C
Sbjct: 481 GEASFFLREMGKNGC 495
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 127/455 (27%), Positives = 236/455 (51%)
Query: 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLL 101
L PK + ++I Q++ AL++F+ K F H TY S+I KL F+A+E +L
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRK-EVGFKHTLSTYRSVIEKLGYYGKFEAMEEVL 63
Query: 102 TELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161
++++N E +++ ++NYG G+ + AV F R++ ++ + +V S N +++ LV
Sbjct: 64 VDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD 123
Query: 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV 221
+ +D H ++ R + + P+V++ I +K+ CK A+R+L+ M S G N+V
Sbjct: 124 SGYFDQAHKVYMRMRDR-GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVV 182
Query: 222 THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281
+ T++GG+ +FG +L G +T+ L+ K G + + K++D++
Sbjct: 183 AYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKV 242
Query: 282 EDNGVEPNEVTYGVMIEAFC-KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGK 340
GV PN TY + I+ C +G+ G R ++ ++++ P +I LC+ K
Sbjct: 243 IKRGVLPNLFTYNLFIQGLCQRGELDGAVR-MVGCLIEQGPKPDVITYNNLIYGLCKNSK 301
Query: 341 VEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF-DEFERGSIPSLLTYNT 399
++A +++ + PD+ +T+I CK G + A+++ D G +P TY +
Sbjct: 302 FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRS 361
Query: 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459
LI G+C E A L+++ + KG++PNV YN LI+G G E ++ EM +KG
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 460 CFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG 494
P +F++L+ GL + G + +V + + G
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
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| TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 122/445 (27%), Positives = 240/445 (53%)
Query: 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPN-FSHNYDTYHSIIHKLARARAFDA 96
W + + P +++ ++ +++++ ++ +F A + N + H+ ++ ++ +L A F A
Sbjct: 10 WSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKA 69
Query: 97 VESLLTELK-QNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155
E L+ +K +N + E++ +++ R YG RP +++ F +++ F+ S ++ T+
Sbjct: 70 AEDLIVRMKIENCVVS--EDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTV 127
Query: 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-VEGAIRVLDEMPSM 214
L LV+ + +L +KN R + + P V + N+LIKALC+ D V+ +++ EMP
Sbjct: 128 LAILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKR 186
Query: 215 GMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDA 274
G P+ T+ T++ G G I+ AK++F +++++ P TYT L++G + +A
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246
Query: 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDL 334
++ ++EM+ G+EPN TY +++ CK +S +A L + M+ R P+ +I
Sbjct: 247 MRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITG 306
Query: 335 LCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI-PS 393
LC+E K+++A EL R+ + PD + +I C K EA DE G I P+
Sbjct: 307 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPN 366
Query: 394 LLTYNT-------LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAK 446
LT+N ++ G+C + + A L+ M +G+ V T L++ CK G +
Sbjct: 367 RLTWNIHVKTSNEVVRGLCANYP-SRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQ 425
Query: 447 EGIRILEEMLDKGCFPNKTSFSLLI 471
+ +++++E++ GC P+K ++ LLI
Sbjct: 426 KAVQLVDEIVTDGCIPSKGTWKLLI 450
|
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| TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 130/430 (30%), Positives = 225/430 (52%)
Query: 53 RQQN-LDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK 111
RQ++ + LAL F + F H T+ +I KLA D+V+ LL ++K
Sbjct: 51 RQESCVPLALHFFKSIANSNL-FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQG-FH 108
Query: 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLM 171
C E+LFI+VI Y G E AV+ F RI++F SV+ N +L+ L+ R +++++
Sbjct: 109 CSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMV 168
Query: 172 FKN-SRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGY 230
+++ R F+ PNVFT N+L+KALCK + V+GA ++L EM + G P+ V++TT++
Sbjct: 169 YRDMKRDGFE--PNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSM 226
Query: 231 VWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE 290
G ++ + ++ +R + P + Y L++G K A ++M EM + G+ PN
Sbjct: 227 CEVGLVKEGR----ELAER-FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNV 281
Query: 291 VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKR 350
++Y +I C + A + L ML+R P+ ++ G DA +LW +
Sbjct: 282 ISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQ 341
Query: 351 LLRKNCMPDNAIS-STIIHWLCKEGKIWEAKKLFDEFER-GSIPSLLTYNTLIAGMCESA 408
++R + N ++ +T++ C G I +A +F E G P++ TY +LI G +
Sbjct: 342 MIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRG 401
Query: 409 ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFS 468
L A +W+ M+ G PNV Y +++ C+ KE ++E M + C P+ +F+
Sbjct: 402 SLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFN 461
Query: 469 LLIEGLYESG 478
I+GL ++G
Sbjct: 462 AFIKGLCDAG 471
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 119/422 (28%), Positives = 220/422 (52%)
Query: 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLR 139
TY+ +I +A + S+L + +P++ + T++R+ +G+ + A++ R
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSPDVVT----YNTILRSLCDSGKLKQAMEVLDR 229
Query: 140 IEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199
+ + + V + L+ A ++ + R + P+V T N+L+ +CK+
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR-GCTPDVVTYNVLVNGICKEG 288
Query: 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT 259
++ AI+ L++MPS G PN++TH IL G +A+++ D+L +G+ P T+
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348
Query: 260 VLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319
+L++ + G L A+ ++++M +G +PN ++Y ++ FCK KK A L+ M+ R
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEA 379
P ++ LC++GKVEDA E+ +L K C P +T+I L K GK +A
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468
Query: 380 KKLFDEFERGSI-PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQG 438
KL DE + P +TY++L+ G+ ++ EA + + + G+ PN T+N ++ G
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Query: 439 FCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498
CK I L M+++GC PN+TS+++LIEGL G E ++++ G ++
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588
Query: 499 DS 500
S
Sbjct: 589 SS 590
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| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 113/367 (30%), Positives = 201/367 (54%)
Query: 113 GENLFITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLM 171
G + ++RN GL + + A+ F + K S+ N LL+A+ + K++D+V +
Sbjct: 49 GSGDYREILRN-GLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVV-IS 106
Query: 172 FKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV 231
+ ++V ++T NILI C++ + A+ +L +M +G P++VT +++L GY
Sbjct: 107 LGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYC 166
Query: 232 WRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEV 291
I +A + +++ G+ PD T+T L+ G + ++AV ++D M G +PN V
Sbjct: 167 HGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 226
Query: 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRL 351
TYGV++ CK + A NLL+ M K + +ID LC+ V+DA L+K +
Sbjct: 227 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 286
Query: 352 LRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF-DEFERGSIPSLLTYNTLIAGMCESAEL 410
K P+ S++I LC G+ +A +L D E+ P+L+T+N LI + +
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 346
Query: 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLL 470
EA +L+DDM+++ ++P++FTYN L+ GFC + ++ E M+ K CFP+ +++ L
Sbjct: 347 VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 471 IEGLYES 477
I+G +S
Sbjct: 407 IKGFCKS 413
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 113/363 (31%), Positives = 194/363 (53%)
Query: 113 GENLFITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLM 171
G + ++RN GL + + A+ F + K S+ N LL+A+ + K++DLV +
Sbjct: 49 GSGDYREILRN-GLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLV-IS 106
Query: 172 FKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV 231
+ + N++T NILI C++ + A+ +L +M +G P++VT +++L GY
Sbjct: 107 LGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYC 166
Query: 232 WRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEV 291
I +A + +++ G+ PD T+T L+ G + ++AV ++D M G +PN V
Sbjct: 167 HGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 226
Query: 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRL 351
TYGV++ CK A NLL+ M K + + VID LC+ +DA L+ +
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286
Query: 352 LRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF-DEFERGSIPSLLTYNTLIAGMCESAEL 410
K P+ S++I LC + +A +L D ER P+++T+N LI + +L
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346
Query: 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLL 470
EA +L+D+M+++ ++P++FTY+ LI GFC E + E M+ K CFPN +++ L
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406
Query: 471 IEG 473
I G
Sbjct: 407 ING 409
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FFE3 | PP388_ARATH | No assigned EC number | 0.6808 | 0.9373 | 0.9233 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XII.233.1 | hypothetical protein (498 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 527 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 4e-18
Identities = 67/334 (20%), Positives = 139/334 (41%), Gaps = 42/334 (12%)
Query: 178 KFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237
K P + T N+L+ D++GA+RVL + G+ + +TT++ G ++
Sbjct: 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDA-----------VK---------- 276
VF ++++ G + T+ L+DG + G++ A VK
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 277 --------------VMDEM--EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK 320
V+ EM E + ++P+ +T G +++A + A+ + + +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI--HE 607
Query: 321 YVPSSALCCKVIDL-LCEE-GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWE 378
Y I + C + G + A ++ + +K PD S ++ G + +
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 379 AKKLFDEFE-RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQ 437
A ++ + +G ++Y++L+ + +A L++D+ + P V T N LI
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
Query: 438 GFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLI 471
C+ + + +L EM G PN ++S+L+
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 8e-18
Identities = 24/50 (48%), Positives = 40/50 (80%)
Query: 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441
P ++TYNTLI G C+ ++ EA +L+++M ++G++PNV+TY++LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 3e-17
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 253 PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302
PD TY L+DGY K G++ +A+K+ +EM+ G++PN TY ++I+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 44/314 (14%)
Query: 191 LIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG 250
LI K V+ V EM + G+ N+ T ++ G G + A +G + +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 251 WVPDATTYTVLMDGYIKLGRLTDAVKVMDEM--EDNGVEPNEVTYGVMIEAFCKG----- 303
PD + L+ + G + A V+ EM E + ++P+ +T G +++A
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 304 ---------------------------KKSGE---ARNLLDDMLQRKYVPSSALCCKVID 333
+ G+ A ++ DDM ++ P ++D
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWE-AKKLFDEFERGSI- 391
+ G ++ A E+ + RK + +S + + C K W+ A +L+++ + SI
Sbjct: 658 VAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK--SIK 714
Query: 392 --PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449
P++ T N LI +CE +L +A + +M G+ PN TY++L+ + +A G+
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 450 RILEEMLDKGCFPN 463
+L + + G PN
Sbjct: 775 DLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 78/389 (20%), Positives = 155/389 (39%), Gaps = 45/389 (11%)
Query: 129 RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTC 188
R E++ R++ +++S SL + + LV R+ +F+ T
Sbjct: 67 RIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTY 126
Query: 189 NILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248
+ L++A + V + S G P+ +L +V G + +A+R+F ++ +
Sbjct: 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186
Query: 249 RGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE 308
R ++ ++ G + G +A + EM ++G + T+ VM+ A +
Sbjct: 187 RNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 309 ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC------------ 356
+ L +L+ V + + C +ID+ + G +EDA ++ + K
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 357 -------------MPDNAIS------STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTY 397
M D+ +S S +I + + AK+ R P +
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 398 NT-LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456
NT L+ + + +A ++D M K N+ ++N LI G+ G + + + E M+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 457 DKGCFPNKTSFSLLI-----EGLYESGNE 480
+G PN +F ++ GL E G E
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 1e-14
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 427 PNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474
P+V TYN LI G+CK G +E +++ EM +G PN ++S+LI+GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 183 PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGY 230
P+V T N LI CKK VE A+++ +EM G+ PN+ T++ ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 218 PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267
P++VT+ T++ GY +G +E A ++F ++ RG P+ TY++L+DG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 73/336 (21%), Positives = 141/336 (41%), Gaps = 22/336 (6%)
Query: 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTF--- 137
Y ++I A++ DA+ + E+ N ++ + F +I AG ++A K F
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALIDGCARAG--QVA-KAFGAY 530
Query: 138 --LRIEKFNVQRSVRSLNTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVFTCNIL 191
+R + R V N L++A Q ++ +D++ M K H P+ T L
Sbjct: 531 GIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLAEM-KAETHPID--PDHITVGAL 585
Query: 192 IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW 251
+KA V+ A V + + +T + +GD + A ++ D+ +G
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 252 VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARN 311
PD ++ L+D G L A +++ + G++ V+Y ++ A K +A
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 312 LLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC 371
L +D+ K P+ + +I LCE ++ A E+ + R P N I+ +I+
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVAS 764
Query: 372 -KEGKIWEAKKLFDEFERGSI-PSLLTYNTLIAGMC 405
++ L + + I P+L+ + G+C
Sbjct: 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 6e-11
Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 8/280 (2%)
Query: 196 CKKDD-VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD 254
CKK V+ A R + P L T ++ DI+ A RV + + G D
Sbjct: 416 CKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 255 ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLD 314
YT L+ K G++ +V EM + GVE N T+G +I+ + + +A
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 315 DMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLL--RKNCMPDNAISSTIIHWLCK 372
M + P + +I + G V+ A ++ + PD+ ++
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 373 EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC-ESAELTEAGRLWDDMVEKGVEPNVFT 431
G++ AK+++ +I T+ C + + A ++DDM +KGV+P+
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLI 471
++ L+ G+ + IL++ +G S+S L+
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 12/262 (4%)
Query: 89 ARARAFDAVESLLTELKQNPEIKCGENLFITV---IRNYGLAGRPELAVKTFLRIEKFNV 145
A RAFD +L E+K E + ITV ++ AG+ + A + + I ++N+
Sbjct: 557 AVDRAFD----VLAEMKA--ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 146 QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAI 205
+ + +N+ Q +D ++ + + K V P+ + L+ D++ A
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 206 RVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGY 265
+L + G+ V++++++G + + A ++ DI P +T L+
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 266 IKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSS 325
+ +L A++V+ EM+ G+ PN +TY +++ A + K + L + + +
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKDDADVGLDLLSQAKEDGIKPN 788
Query: 326 ALCCKVIDLLCEEGKVEDACEL 347
+ C+ I LC + E AC L
Sbjct: 789 LVMCRCITGLCLR-RFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 2e-10
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 423 KGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455
KG++P+V TYN LI G C+ G E + +L+EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 3e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 181 VVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212
+ P+V T N LI LC+ V+ A+ +LDEM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 9e-08
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 153 NTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK 197
NTL++ + + + +F N K + PNV+T +ILI LCK
Sbjct: 7 NTLIDGYCKKGKVEEALKLF-NEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 249 RGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282
+G PD TY L+DG + GR+ +AV+++DEME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 186 FTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN 219
T N LI LCK VE A+ + EM G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN 463
TYN LI G CK G +E + + +EM ++G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 257 TYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE 290
TY L+DG K GR+ +A+++ EM++ G+EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLC 336
P+ VTY +I+ +CK K EA L ++M +R P+ +ID LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 331 VIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372
+ID C++GKVE+A +L+ + ++ P+ S +I LCK
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 46/283 (16%)
Query: 206 RVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGY 265
R L PS+G + +L +V G++ +A VFG + +R D ++ VL+ GY
Sbjct: 111 RALSSHPSLG----VRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGY 162
Query: 266 IKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSS 325
K G +A+ + M GV P+ T+ ++
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-------------------------- 196
Query: 326 ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDE 385
C + DL G+ E+ ++R D + + +I K G + A+ +FD
Sbjct: 197 --CGGIPDL--ARGR-----EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 386 FERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNA 445
R +++N +I+G E+ E E L+ M E V+P++ T +I +G+
Sbjct: 248 MPRRDC---ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 446 KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488
+ G + ++ G + + + LI+ G+ GE KV S
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 284 NGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDM 316
G++P+ VTY +I+ C+ + EA LLD+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 83/429 (19%), Positives = 167/429 (38%), Gaps = 82/429 (19%)
Query: 117 FITVIRNYGLAGRPELAV--KTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKN 174
F V+R G G P+LA + + +F + V +N L+ V K D+V +
Sbjct: 190 FPCVLRTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYV--KCGDVV-----S 240
Query: 175 SRHKFKVVP--NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW 232
+R F +P + + N +I + + + + M + + P+L+T T+++
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 233 RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKV---MDE--------- 280
GD + + G ++ G+ D + L+ Y+ LG +A KV M+
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 281 -------------------MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY 321
ME + V P+E+T ++ A C + L ++ +RK
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA-CACLGDLDVGVKLHELAERKG 419
Query: 322 VPSSALCCK-VIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS-STIIHWLCKEGKIWEA 379
+ S + +I++ + ++ A E++ + K + IS ++II L + +EA
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEA 474
Query: 380 KKLFDEFERGSIPSLLTYNTLIAG-------MCES---AELTEAGRLWDDMVEKGV---- 425
F + P+ +T ++ MC A + G +D + +
Sbjct: 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 426 ----------------EPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSL 469
E +V ++N+L+ G+ G + + M++ G P++ +F
Sbjct: 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 470 LIEGLYESG 478
L+ SG
Sbjct: 595 LLCACSRSG 603
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGC 460
TYN LI G+CK G +E + + +EM +KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV 429
TYNTLI G+C++ + EA L+ +M E+G+EP+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 68/314 (21%), Positives = 124/314 (39%), Gaps = 58/314 (18%)
Query: 153 NTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212
N L+ + K D +F N K +V + +I L + A+ +M
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEALIFFRQM- 481
Query: 213 SMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG-----WVP-------------- 253
+ + PN VT L G + K + +L G ++P
Sbjct: 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 254 -----------DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302
D ++ +L+ GY+ G+ + AV++ + M ++GV P+EVT+ I C
Sbjct: 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISLLCA 598
Query: 303 GKKSGEARNLLD--DMLQRKY--VPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP 358
+SG L+ ++ KY P+ V+DLL GK+ +A ++ P
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---P 655
Query: 359 DNAISSTI-----IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGM-CESAELTE 412
D A+ + IH + G++ A+ +F E + S+ Y L+ + ++ + E
Sbjct: 656 DPAVWGALLNACRIHRHVELGEL-AAQHIF-ELDPNSV----GYYILLCNLYADAGKWDE 709
Query: 413 AGRLWDDMVEKGVE 426
R+ M E G+
Sbjct: 710 VARVRKTMRENGLT 723
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 257 TYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286
TY L+ GY K G+L +A+++ EM++ GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 53/284 (18%), Positives = 117/284 (41%), Gaps = 22/284 (7%)
Query: 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVL 261
+ A+ M + P+ +T ++L GD++ ++ +G + L
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 262 MDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR-- 319
++ Y K + A++V + + V +++ +I + EA ML
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486
Query: 320 ----KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK 375
+ + + C ++ L+C GK E+ +LR D + + ++ + G+
Sbjct: 487 PNSVTLIAALSACARIGALMC--GK-----EIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435
+ A F+ E+ ++++N L+ G + + A L++ MVE GV P+ T+ L
Sbjct: 540 MNYAWNQFNSHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 436 IQGFCKIGNAKEGIRILEEMLDK-GCFPNKTSFSLLIEGLYESG 478
+ + G +G+ M +K PN ++ +++ L +G
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 291 VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSS 325
VTY +I+ CK + EA L +M +R P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 186 FTCNILIKALCKKDDVEGAIRVLDEMPSMGM 216
T N LI CK +E A+ + EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 5/179 (2%)
Query: 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVL 261
E A+ + EM G+ + T + ++ + +E+AK+ ++ G+ D T L
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 262 MDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY 321
+D Y K GR+ DA V D M N +++ +I + + +A + + M+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 322 VPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS-STIIHWLCKEGKIWEA 379
P+ V+ G E E+++ + + + A+ + +I L +EG + EA
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 429 VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462
+ TYN L+ K G+ + +LEEM G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 3e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 354 KNCMPDNAISSTIIHWLCKEGKIWEAKKLFDE 385
K PD +T+I LC+ G++ EA +L DE
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 255 ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP 288
TY L+ K G A+ V++EM+ +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 27/207 (13%)
Query: 263 DGYIKL---GRLTDAVKVMDEMEDNG-VEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318
D Y +L GR+ D + ++++ME G ++ +++ + +A CK +++ + +
Sbjct: 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVK-----EAFRF 428
Query: 319 RKYVPSSAL---------CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHW 369
K + + L C D+ +G + + + L+ +C + +T+I
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDI---DGALRVLRLVQEAGLKADCK----LYTTLIST 481
Query: 370 LCKEGKIWEAKKLFDEFERGSI-PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN 428
K GK+ ++F E + ++ T+ LI G + ++ +A + M K V+P+
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 429 VFTYNMLIQGFCKIGNAKEGIRILEEM 455
+N LI + G +L EM
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEM 568
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 388 RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421
+G P ++TYNTLI G+C + + EA L D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPD 359
+ID LC+ G+VE+A EL+K + + PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGV 425
TYN+LI+G C++ +L EA L+ +M EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.77 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.69 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.59 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.49 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.3 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.2 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.07 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.04 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.97 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.96 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.94 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.87 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.75 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.73 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.5 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.41 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.41 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.37 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.12 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.11 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.11 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.99 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.9 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.8 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.79 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.78 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.62 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.57 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.23 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.17 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.89 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.69 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.6 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.42 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.35 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.3 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.23 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.16 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.94 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.94 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.93 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.86 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.82 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.33 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 95.21 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.9 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.7 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 94.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.34 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.22 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.12 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.1 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.07 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.05 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.73 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.49 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 93.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.46 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.34 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.33 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.17 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.95 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.61 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.49 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.14 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.01 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.88 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.74 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.62 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.44 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 90.95 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.92 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.86 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.59 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.49 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.23 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.92 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.87 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.58 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.07 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 89.04 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.92 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.64 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.56 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.22 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.09 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.99 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.98 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.83 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.61 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.58 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.46 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 87.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.97 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.76 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.7 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.47 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.15 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.78 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.7 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 84.65 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.63 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.54 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 84.4 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.25 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 83.89 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.16 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.84 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.37 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 81.19 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.26 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.2 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-63 Score=501.60 Aligned_cols=477 Identities=15% Similarity=0.201 Sum_probs=380.4
Q ss_pred CCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhh
Q 043284 37 PWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENL 116 (527)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 116 (527)
..++...+..+...+.+.|++++|+++|+.|.+.. -..++...+..++..|.+.|.+++|..+|+.+.. |+..+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~T 439 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLST 439 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHH
Confidence 33456667888888889999999999999995322 2345666677777888888888888888877754 47778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.+|.+|+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888765 77788888888888888
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHhHHHHHHHHHhcCChhHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD--RGWVPDATTYTVLMDGYIKLGRLTDA 274 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a 274 (527)
+.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888875 46778888888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRK 354 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (527)
.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043284 355 NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYN 433 (527)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 433 (527)
|+.|+..+|+.++.+|++.|++++|.++|++| ..+..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88888888888888888888888888888888 45677888888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CChhHHHHHHHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE----S-------------------GNEGEVGKVVSMA 490 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 490 (527)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 8888888888888888888888888888888888877755331 1 2246688888888
Q ss_pred HhCCC-CChhhHHHHHHHHH--hchhhhHHHHH
Q 043284 491 TASGS-VESDSWNFLLTRIV--SDLDSGAGALD 520 (527)
Q Consensus 491 ~~~~~-~~~~~~~~ll~~~~--~~~~~a~~~~~ 520 (527)
.+.+. ||..+|..++.... +..+.+...++
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 87775 67777777775221 34444444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=499.87 Aligned_cols=480 Identities=17% Similarity=0.258 Sum_probs=448.9
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
++..++..++..+.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+ .+..|+..+|+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tyn 476 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYT 476 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHH
Confidence 4455677888889999999999999999832 7999999999999999999999999999998 47788999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|... ++.||..+|+.+|.+|++.
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999877 8999999999999999999
Q ss_pred CChHHHHHHHHhccc--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 199 DDVEGAIRVLDEMPS--MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (527)
+|++|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|...|.
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 357 MPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
.|+..+|+.++.+|++.|++++|.++|++| ..+..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHc----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 436 IQGFCK----I-------------------GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 436 ~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+..|.+ . +..+.|..+|++|.+.|+.||..||..++.++.+.+..+.+..+++.+..
T Consensus 796 Iglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 876432 1 12467999999999999999999999999888899999999999998765
Q ss_pred CC-CCChhhHHHHHHHHHhchhhhHHHHHHHHhhc
Q 043284 493 SG-SVESDSWNFLLTRIVSDLDSGAGALDELLVKN 526 (527)
Q Consensus 493 ~~-~~~~~~~~~ll~~~~~~~~~a~~~~~~~l~~~ 526 (527)
.+ .++..+|+.++..+..-.++|..+++.+.+..
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC
Confidence 54 47778999999976323468999999988764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=501.09 Aligned_cols=468 Identities=15% Similarity=0.213 Sum_probs=447.1
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN 115 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (527)
...|+...++.++.+|.+.|++++|..+|+.|. .+|..+|+.++.+|.+.|++++|.++|++|.+ .+..|+..
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ 289 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLM 289 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChh
Confidence 345788899999999999999999999999993 25778999999999999999999999999998 47889999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (527)
+|..++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~ 364 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 46899999999999
Q ss_pred HcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 196 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 043284 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN 355 (527)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (527)
++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||..+|..++.+|++.|+.+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 99999974 5889999999999999999999999999986 589999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 356 CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
..++..+++.++.+|++.|++++|..+|+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 9999999999999999999999999999987 589999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--Hhch
Q 043284 436 IQGFCKIGNAKEGIRILEEML-DKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDL 512 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~ 512 (527)
+.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. ..||..+|.+++..+ +|+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCh
Confidence 999999999999999999999 78999999999999999999999999999999984 458999999999965 5999
Q ss_pred hhhHHHHHHHHhhc
Q 043284 513 DSGAGALDELLVKN 526 (527)
Q Consensus 513 ~~a~~~~~~~l~~~ 526 (527)
+.|+.+.+++++++
T Consensus 674 e~~e~~a~~l~~l~ 687 (857)
T PLN03077 674 ELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=471.17 Aligned_cols=466 Identities=16% Similarity=0.233 Sum_probs=407.7
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+.+.|++++|+++|++|.. ..++.|+..+|..++.+|.+.++++.+.+++..+.+ .+..|+..+++.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~-~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEA-GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHH
Confidence 678888888999999999999998843 334568888999999999999999999999998888 467778889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE 202 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (527)
.|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|... |..|+..+|+.++.++.+.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999886 478889999999999999999999999999876 78889999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999889889999999999999999999999999988853 488899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988853 57888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE-KGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 440 (527)
|+.++.+|++.|+.++|.++|++| ..+..||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 999999999999999999999998 667889999999999999999999999999999975 588899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGA 518 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~ 518 (527)
+.|++++|.+++++| ++.|+..+|+.|+.+|...|+.+.|..+++++....+.+...|..++..+. |++++|.++
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 999999999888765 467899999999999999999999999999888777777778887777443 899999999
Q ss_pred HHHHHhhc
Q 043284 519 LDELLVKN 526 (527)
Q Consensus 519 ~~~~l~~~ 526 (527)
++.+.+..
T Consensus 551 ~~~m~~~g 558 (697)
T PLN03081 551 VETLKRKG 558 (697)
T ss_pred HHHHHHcC
Confidence 88876653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=473.05 Aligned_cols=437 Identities=20% Similarity=0.234 Sum_probs=417.6
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+...|+.++..+.+.|++++|.++|+.+....+..|+..+|..++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45568999999999999999999999999876667789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999996 379999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
.+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 46999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHH
Q 043284 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395 (527)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (527)
|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.++.+|++.|++++|.++|++|.. +|..
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~ 392 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLI 392 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999954 7999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD-KGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 474 (527)
+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 69999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHHHHhhc
Q 043284 475 YESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDELLVKN 526 (527)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~l~~~ 526 (527)
.+.|++++|.++++++. ..|+..+|+.++..+ +|+.+.|+++++++++.+
T Consensus 473 ~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 473 GREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 99999999999998863 357888999999966 499999999999987653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-59 Score=480.69 Aligned_cols=465 Identities=18% Similarity=0.256 Sum_probs=417.0
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
++...++.++..|.+.|+++.|..+|+.|. .+|..+|+.++.+|.+.|++++|.++|++|.. .+..|+..+|.
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~ 191 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMP------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFP 191 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCC------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHH
Confidence 455667888999999999999999999983 25788999999999999999999999999988 47888999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.++.+|...+++..+.+++..+.+.|+.++..+++.++.+|++.|++++|..+|++|. .||..+||++|.+|++.
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFEN 266 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996 36899999999999999
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVM 278 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (527)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 043284 279 DEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP 358 (527)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (527)
++|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|..++.+|++.|+++.+.++++.+.+.|..+
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9997 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043284 359 DNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQG 438 (527)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 438 (527)
+..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 999999999999999999999999999854 6888999999999999999999999999986 588999998888887
Q ss_pred HHccCCHHHHHHHHHHHHHCCCC------------------------------CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 439 FCKIGNAKEGIRILEEMLDKGCF------------------------------PNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~~~------------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
|++.|+.+.+.+++..+.+.|+. ||..+|+.++.+|.+.|+.++|.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777776666654 556667777777777777777777777
Q ss_pred HHHhCCC-CChhhHHHHHHHHH--hchhhhHHHHHHHH
Q 043284 489 MATASGS-VESDSWNFLLTRIV--SDLDSGAGALDELL 523 (527)
Q Consensus 489 ~~~~~~~-~~~~~~~~ll~~~~--~~~~~a~~~~~~~l 523 (527)
+|.+.+. ||..+|..++..+. |++++|.++++.+.
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7766553 66777777777554 77777777777665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=284.23 Aligned_cols=465 Identities=13% Similarity=0.099 Sum_probs=381.9
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
....++..+.+.|++++|..+++.+.+..| .++..+..++..+...|++++|.+.|+++.+..|. +...+..++.
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~ 507 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQP---DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD--FFPAAANLAR 507 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHH
Confidence 344566666777777777777777754443 46667888888888888888888888888775443 5566777888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE 202 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (527)
.+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++... .+.+...+..++..+...|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHH
Confidence 8888888888888888888765 566778888888888889999999888888765 3445667778888899999999
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
+|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999887654 3467788889999999999999999999988764 3467778888889999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
+.. +.+..++..++..+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.++.+...++ +..+
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~ 738 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQN 738 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchH
Confidence 764 33578888889999999999999999999988653 3667777888899999999999999999988753 3366
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+..++.++.+.|++++|...++.+....+.+...+..++..|...|++++|..+|+++.+.. +.+..+++.+...+...
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 77788899999999999999999977778889999999999999999999999999999864 45678889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHH
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGALD 520 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~ 520 (527)
|+ .+|+.+++++.+.. +-+..++..++..+.+.|++++|.++++++.+.++.+..++..+..... |+.+.|.+.++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99 88999999998853 2345667788899999999999999999999999888888887777443 99999999999
Q ss_pred HHHh
Q 043284 521 ELLV 524 (527)
Q Consensus 521 ~~l~ 524 (527)
++++
T Consensus 896 ~~~~ 899 (899)
T TIGR02917 896 KLLN 899 (899)
T ss_pred HHhC
Confidence 9874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=281.44 Aligned_cols=446 Identities=13% Similarity=0.077 Sum_probs=232.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+.+.|++++|.+.|+++.+..| .+...+..+...+...|++++|.+.++.+.+..+. .......++
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~ 438 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP---ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLI 438 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc--chhhHHHHH
Confidence 3444555555555666666666655544433 23445555555555555555555555555543221 222333344
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
..+.+.|++++|+++++.+.... +.+..++..+...+...|++++|...|+++... .+.+...+..++..+...|++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCH
Confidence 44555555555555555554432 344555555556666666666666666555543 122334445555555555666
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (527)
++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+.+.|++++|..+++++
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666665555443 1244455555555555566666666555555443 224444555555555566666666666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh
Q 043284 282 EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA 361 (527)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (527)
.+.. +.+...|..+..++...|++++|...++++.+... .+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 5432 23455555566666666666666666666555432 234445555555555666666666666555543 22344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 441 (527)
.+..++..+...|++++|..+++.+....+.+...+..++..+...|++++|...|+++... .|+..++..++.++.+
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 55555555555555555555555554444445555555555555555555555555555543 2333444445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHH
Q 043284 442 IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNF 503 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (527)
.|++++|.+.++++.+.. +.+...+..++..|.+.|++++|.+.|+++.+..+.++..+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555432 2234444455555555555555555555555554444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-24 Score=224.29 Aligned_cols=478 Identities=13% Similarity=0.026 Sum_probs=296.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCH-------------HHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNY-------------DTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
++..+..++..+.+.|+.++|.+.++++.+..|+...-. .....++..+...|++++|.+.|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 455567778888888888888888888877776422110 0123344567778888888888888876
Q ss_pred CCCCCcChhh-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----
Q 043284 107 NPEIKCGENL-FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV---- 181 (527)
Q Consensus 107 ~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---- 181 (527)
..|. +... ...........|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..++++......
T Consensus 141 ~~p~--~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 141 GAPP--ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred CCCC--ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 5332 2211 1111122234588888888888888765 556677778888888888888888888876432100
Q ss_pred -------------C--------------CChhhH---------------------HHHHHHHHcCCChHHHHHHHHhccc
Q 043284 182 -------------V--------------PNVFTC---------------------NILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 182 -------------~--------------~~~~~~---------------------~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
. |+.... ......+...|++++|+..|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 100000 0123445667888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHhH------------HHHHHHHHhcCChhHHHHHHHH
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD-ATTY------------TVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
... .+...+..+..++.+.|++++|+..|++.++...... ...+ ......+.+.|++++|+..|++
T Consensus 298 ~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 ANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 542 2667788888888888888888888888877643211 1111 1223456678888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH------------------------------
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCK------------------------------ 330 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------ 330 (527)
+.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 88763 235566777788888888888888888887765322 2222211
Q ss_pred ------------HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHH
Q 043284 331 ------------VIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYN 398 (527)
Q Consensus 331 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 398 (527)
....+...|++++|++.++++.+..+. +...+..+...|.+.|++++|...++++....+.+...+.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 223344567888888888888776533 5666677777888888888888888877544444444443
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCCHHHHHHHHHHH
Q 043284 399 TLIAGMCESAELTEAGRLWDDMVEK---------------------------------------GVEPNVFTYNMLIQGF 439 (527)
Q Consensus 399 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~p~~~~~~~l~~~~ 439 (527)
.+...+...++.++|+..++.+... ..+.+...+..+...+
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3333333334444443333322100 0122334455566666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHH--HHhchhhhHH
Q 043284 440 CKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR--IVSDLDSGAG 517 (527)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~a~~ 517 (527)
.+.|++++|+..|+++++.. +.+...+..++..+...|++++|.+.++.+.+..+.+...+..+... ..|+.++|.+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777777777642 22455666677777777777777777777665554444444433332 2277777777
Q ss_pred HHHHHHhh
Q 043284 518 ALDELLVK 525 (527)
Q Consensus 518 ~~~~~l~~ 525 (527)
.++++++.
T Consensus 693 ~~~~al~~ 700 (1157)
T PRK11447 693 TFNRLIPQ 700 (1157)
T ss_pred HHHHHhhh
Confidence 77776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-24 Score=224.30 Aligned_cols=471 Identities=14% Similarity=0.042 Sum_probs=348.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh--------
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN-------- 115 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------- 115 (527)
+-..+..+...++.+.|.+.+++++..+|+ ++..+..++..+...|+.++|.+.++++.+..|..+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 677888899999999999999999888874 788999999999999999999999999998755433221
Q ss_pred ------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 116 ------LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 116 ------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
.....+..+...|++++|++.|+++.+.+ +++.. ............|+.++|++.++++... .+.+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~ 184 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLR 184 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 12344557889999999999999999765 44432 2222222233469999999999999986 34466778
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCC------------------C--------------CCHHHH-------------
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPSMGM------------------V--------------PNLVTH------------- 223 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------~--------------p~~~~~------------- 223 (527)
..+...+...|+.++|++.++++..... . |+....
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 8899999999999999999998754320 0 110000
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHH-
Q 043284 224 --------TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTY- 293 (527)
Q Consensus 224 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~- 293 (527)
......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 011345667899999999999999874 3478889999999999999999999999998764321 11112
Q ss_pred -----------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 294 -----------GVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 294 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
......+.+.|++++|...|+++.+.... +...+..+..++...|++++|++.|+++.+..+. +...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 12244677899999999999999987543 5667777899999999999999999999876533 2322
Q ss_pred HHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 363 SST------------------------------------------IIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 363 ~~~------------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
+.. +...+...|++++|...|++.....|.+...+..+
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L 501 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 222 22334567889999999999877777788888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---------------------
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDK--------------------- 458 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 458 (527)
...|...|++++|...++++.+. .| +...+..+...+...|+.++|+..++++...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 99999999999999999998865 33 3333332222333444444444443322100
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHH
Q 043284 459 ------------------GCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGA 518 (527)
Q Consensus 459 ------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~ 518 (527)
..+++...+..++..+.+.|++++|++.++++.+..|.+...+..+.... .|+.++|++.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 12334556677888899999999999999999998888888887777744 3999999999
Q ss_pred HHHHHhh
Q 043284 519 LDELLVK 525 (527)
Q Consensus 519 ~~~~l~~ 525 (527)
++++++.
T Consensus 660 l~~ll~~ 666 (1157)
T PRK11447 660 LAKLPAT 666 (1157)
T ss_pred HHHHhcc
Confidence 9988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-25 Score=199.20 Aligned_cols=451 Identities=14% Similarity=0.104 Sum_probs=374.7
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN 115 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (527)
...........|+....+.|++++|.+.....-+.+|.. ......+-..+....+++....--....+..+. -..
T Consensus 43 ~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~---~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q--~ae 117 (966)
T KOG4626|consen 43 KTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTN---TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ--GAE 117 (966)
T ss_pred cCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCc---ccceeeehhhhhcccchhhhhhhhhhhhhccch--HHH
Confidence 334444557788888999999999999998887666643 333444445566667777766655555543332 677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHH-HHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCN-ILIKA 194 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~ 194 (527)
.|..+...+-..|+++.|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+.... .|+..... .+...
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHH
Confidence 89999999999999999999999999875 556889999999999999999999999888754 56554433 34555
Q ss_pred HHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 043284 195 LCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 195 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (527)
.-..|+.++|...+.+.++.. |. ...|..|...+-.+|+...|++.|++.++.+. .-...|-.|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchH
Confidence 566899999999999888753 33 46789999999999999999999999998742 245788899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 274 AVKVMDEMEDNGVEP-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 274 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
|+..|.+.... .| ....+..+...|...|+.+.|+..+++.++..+. -+..|+.+..++-..|+..+|...|.+.+
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999998876 44 4678888888999999999999999999986433 36689999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 043284 353 RKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFT 431 (527)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~ 431 (527)
...+ ......+.|..+|...|.++.|..+|.....-.+.-....+.|...|-++|++++|+..|++... +.|+ ...
T Consensus 348 ~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 348 RLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred HhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 8753 36677888999999999999999999999776666678899999999999999999999999984 5777 568
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
|+.+...|-..|+.+.|+..+.+++.. .|.. ..++.|+..|..+|+..+|+.-++.+.+..|.-++.+..++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 999999999999999999999999984 4664 578899999999999999999999999999877778877777
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-22 Score=199.97 Aligned_cols=457 Identities=11% Similarity=0.024 Sum_probs=267.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
.+..+...|++++|+..|+.+++.+|+ +..++..+...+...|++++|+..++++.+..|. +...+..+ ..
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~L-a~--- 120 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSL-AA--- 120 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHH-HH---
Confidence 333444559999999999999998885 5889999999999999999999999999987552 44444333 22
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH-HHHHHc
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA--------LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL-IKALCK 197 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 197 (527)
.+++++|.++++++.... |.+..++..+... |.+. ++|.+.++ .... ...|+....... ...|.+
T Consensus 121 i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 121 IPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATF-AASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred hccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHH
Confidence 289999999999998875 4445555555544 4444 33333333 2111 122233333333 667777
Q ss_pred CCChHHHHHHHHhcccCCCC------------------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 198 KDDVEGAIRVLDEMPSMGMV------------------------------PNLVTHTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~------------------------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
.|++++|++.+.++.+.+.. -+...+..+...+.+.|+.++|.+++.++.
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 77777777777776665421 233334444555556666666666665543
Q ss_pred HCCCC-CCHHhH------------------------------HHHHHH--------------------------------
Q 043284 248 DRGWV-PDATTY------------------------------TVLMDG-------------------------------- 264 (527)
Q Consensus 248 ~~~~~-~~~~~~------------------------------~~l~~~-------------------------------- 264 (527)
..... |...++ -.++..
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 22100 111111 000111
Q ss_pred -------------------------------HHhcCChhHHHHHHHHHHHC-C-CCC-----------------------
Q 043284 265 -------------------------------YIKLGRLTDAVKVMDEMEDN-G-VEP----------------------- 288 (527)
Q Consensus 265 -------------------------------~~~~g~~~~a~~~~~~~~~~-~-~~~----------------------- 288 (527)
..+.|+.++|.++++..... + ...
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 11223333333333332220 0 000
Q ss_pred -----------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 043284 289 -----------------------------------------NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327 (527)
Q Consensus 289 -----------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (527)
+...|..+..++.. +++++|...+.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 11112222222222 33333444333333321 22222
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES 407 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (527)
...+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...++......+.+...+..+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 222233334566677777666665443 222333445556666677777777777776544444444444444444455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++++... +.+...+..++.++...|++++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7888888888877755 5667777778888888888888888888888753 224456777777888888888888888
Q ss_pred HHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHHHHHhhc
Q 043284 488 SMATASGSVESDSWNFLLTRIV--SDLDSGAGALDELLVKN 526 (527)
Q Consensus 488 ~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~l~~~ 526 (527)
+++.+..|.+...+..+..... |+++.|+..++++++++
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888887777766666666433 88888888888887653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-24 Score=191.68 Aligned_cols=431 Identities=16% Similarity=0.114 Sum_probs=359.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
....+..-..+.|++.+|++.-..+-+.++. +......+-..+.+..+.++...--....+.. +.-..+|..+...+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 4566777788999999999998888776554 33444455566777777877766665555543 55678999999999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHhcCChHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT-TILGGYVWRGDIEN 238 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~ 238 (527)
-..|++++|+.+++.+.+. .+..+..|..+..++...|+.+.|.+.|.+.++.+ |+..... .+....-..|+.++
T Consensus 127 kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 9999999999999999875 23357889999999999999999999999988764 6655443 34445556899999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN-EVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
|...|.+.++.. +--...|..|.-.+...|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..+.+..
T Consensus 203 a~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 203 AKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 999999988873 224567889999999999999999999999986 454 5789999999999999999999999888
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHH
Q 043284 318 QRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTY 397 (527)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (527)
...+. ....+..+...|..+|+.+.|+..|++.++..+. -+..|+.+..++-..|++.+|.+.+.+...-.+......
T Consensus 280 ~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 280 NLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred hcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 75322 4566777888899999999999999999987533 467899999999999999999999999987777888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLY 475 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 475 (527)
+.|...|...|.+++|..+|....+. .|. ....+.|...|-.+|++++|+..|+++++ +.|+. ..++.++..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999999865 555 56789999999999999999999999998 67875 67999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHHHHHhhc
Q 043284 476 ESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGALDELLVKN 526 (527)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~l~~~ 526 (527)
..|+.+.|.+.+.++..-.|.-.+....|.+... |+...|.+.|+.+|+++
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999988766667777766443 99999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-22 Score=197.04 Aligned_cols=432 Identities=13% Similarity=0.036 Sum_probs=310.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..+.+.|++++|+..|+++++..| ++..|..+..++.+.|++++|++.++.+.+..|. +...+..+..+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p----~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a 203 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 45678889999999999999999987665 5668999999999999999999999999987544 66788899999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+...|++++|+..|......+ ..+......++..+......+.+...+ .. .+++...+..+.. +........
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l----~~--~~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEIL----ET--KPENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHH----hc--CCCCCCCHHHHHH-HHHHccCCc
Confidence 999999999999888776543 222222222222221111122233322 21 1222333333333 222212222
Q ss_pred HHHHHHhcccCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChhHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNL-VTHTTILGG---YVWRGDIENAKRVFGDILDRG--WVPDATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
...-+....+. .++. ..+..+... ....+++++|.+.|+..++.+ .+.....+..+..++...|++++|+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222221111 1111 111111111 123578999999999999864 123456788888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 043284 278 MDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM 357 (527)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (527)
|++..+.. +.....|..+...+...|++++|...|++..+.+. .+...+..+..++...|++++|...|++.....+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 99998763 22466888888999999999999999999988643 3577888899999999999999999999998763
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------H
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF------T 431 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~ 431 (527)
.+...+..+..++.+.|++++|...|++.....+.+...++.+...+...|++++|+..|++..+.....+.. .
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 3667778888999999999999999999977777788999999999999999999999999988752211111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
++.....+...|++++|..++++++... |+ ...+..++..+.+.|++++|.+.|+++.+..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 1222223344699999999999998854 54 456888999999999999999999998877653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-20 Score=188.35 Aligned_cols=427 Identities=13% Similarity=0.022 Sum_probs=305.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+...+..+.+.|++++|+..|+++.+..| +...|..+..+|.+.|++++|++.+++.++.+ +.+..++..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 456778888899999999999999988644 56788899999999999999999999999875 56678899999999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (527)
...|++++|+.-|.......+.. ......++..+........+...++.-. ++...+..+.. +.........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~~~~~l~~~~-----~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLKKFAESKAKEILETKP-----ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCHHHHHH-HHHHccCCcc
Confidence 99999999998887765542221 1111222222222111223333332211 12222222222 2221111222
Q ss_pred HHHHHHHHHCCCCCC-HHhHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHH
Q 043284 240 KRVFGDILDRGWVPD-ATTYTVLMDGY---IKLGRLTDAVKVMDEMEDNG-VEP-NEVTYGVMIEAFCKGKKSGEARNLL 313 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (527)
..-+....+. .+. ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2112211111 111 11111111111 23478999999999998764 223 4567888888999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 043284 314 DDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPS 393 (527)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (527)
++..+..+. ....+..+..++...|++++|...++.+.+.+ +.+..++..+...+...|++++|...|++.....+.+
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 999886432 45677888889999999999999999998875 3467888899999999999999999999998878888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-H-------
Q 043284 394 LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-T------- 465 (527)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~------- 465 (527)
...+..++.++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|++.|+++++.. |+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHH
Confidence 899999999999999999999999999875 23357788999999999999999999999999753 321 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHHHHhh
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDELLVK 525 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~l~~ 525 (527)
.+......+...|++++|.++++++....+.+...+..+.... .|+++.|.+.+++++++
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1222222344469999999999999888776665666655533 39999999999998775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-20 Score=187.31 Aligned_cols=361 Identities=13% Similarity=0.084 Sum_probs=185.4
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
++.+++.-.-+|............+..-...++..+.+.|++++|..+++.+....|. +...+..++.+....|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHH
Confidence 4444444444444332222211222233344445555556666666666666554333 33344444455555666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
|++.++++.... |.+...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 666666665554 344555555556666666666666666665543 12234455555556666666666666665554
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043284 213 SMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 213 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
..... +...+..+ ..+...|++++|...++.+++....++...+..+...+...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 43211 12222222 2345556666666666665554322233333344455556666666666666655543 223445
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGE----ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIH 368 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (527)
+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...++++....+ .+......+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 5555555666666553 55555555554322 444555555566666666666666666555432 23444455555
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
++.+.|++++|...|+.+....+.+...+..+..++...|++++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5666666666666666554333333333333445555566666666666665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-20 Score=180.26 Aligned_cols=456 Identities=14% Similarity=0.063 Sum_probs=353.0
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
..+|+....|+..++-.|+++.+..+.+-+++....-..-.+.|..+++++...|++++|...|....+..+.. ....+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~ 345 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPL 345 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccc
Confidence 34677888899999999999999999988876543333345679999999999999999999999988753321 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK----RYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
..+...++..|+++.+...|+++.+.. +.+..+...+...|...+ ..+.|..++.+.... .+.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 688999999999999999999998875 566778888888887765 567888888887765 3557788888877
Q ss_pred HHHcCCChHHHHHHHHhcc----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------HhHHH
Q 043284 194 ALCKKDDVEGAIRVLDEMP----SMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR---GWVPDA------TTYTV 260 (527)
Q Consensus 194 ~~~~~~~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ 260 (527)
.+-..+-+.. +.+|.... ..+..+.....|.+.......|+++.|...|...+.. ...++. .+--.
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 7765554443 76665543 3444577888999999999999999999999988765 122232 23344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDNGVEPN-EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
+..+.-..++.+.|.+.|..+.+. .|+ +..|.-++...-..+...+|...++.....+ ..++..+..+...+.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 667777788999999999999876 444 3445455544445678889999999988754 235566666777888888
Q ss_pred CHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHH------------cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 340 KVEDACELWKRLLRKN-CMPDNAISSTIIHWLCK------------EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE 406 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (527)
.+..|.+-|+.+.+.- ..+|+.....|...|.+ .+..++|+++|.++....|.|...-|.++-+++.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 8888888777766542 23566666666665543 3457889999999988889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK-GCFPNKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
.|++.+|..+|.+..+.. .-...+|..+.++|..+|++..|++.|+...+. +-..+..+...|++++.+.|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999873 235678999999999999999999999998854 333467789999999999999999999
Q ss_pred HHHHHHhCCCCChhhHH
Q 043284 486 VVSMATASGSVESDSWN 502 (527)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ 502 (527)
.+..+....|.++....
T Consensus 738 ~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHhCCccchHHh
Confidence 99999888876665433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-20 Score=187.03 Aligned_cols=419 Identities=10% Similarity=0.014 Sum_probs=290.9
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.++....-.+.+....|+.++|++++..+....| .+...+..+...+...|++++|.++|+++.+..|. +...+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~---~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ---LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Confidence 3444455667778889999999999999854333 46667899999999999999999999999886554 566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++... .+.+...+..+..++...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 88889999999999999999998874 55666 888889999999999999999999876 333556667788888889
Q ss_pred CChHHHHHHHHhcccCCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCCHH-hHH---
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNL------VTHTTILGGYVW-----RGDI---ENAKRVFGDILDR-GWVPDAT-TYT--- 259 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~--- 259 (527)
+..+.|++.++.... .|+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999999987775 2332 111222222221 1223 6677778777754 1122221 111
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHH
Q 043284 260 -VLMDGYIKLGRLTDAVKVMDEMEDNGVE-PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP---SSALCCKVIDL 334 (527)
Q Consensus 260 -~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 334 (527)
..+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133445668888888888888876532 222 22224667888888888888888877643221 12344556667
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCC-----------CC---HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCM-----------PD---NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
+...|++++|...++.+....+. |+ ...+..+...+...|+.++|+..++++....|.+...+..+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 78888888888888888765321 12 12344556677777888888888888766667777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 474 (527)
+..+...|++++|++.+++..+. .|+ ...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 78777888888888888877765 444 445556666677777888888888887774 35555444443333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-20 Score=184.57 Aligned_cols=404 Identities=11% Similarity=0.053 Sum_probs=311.7
Q ss_pred HHhcCCchHHHHHHHHhhhCCC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 88 LARARAFDAVESLLTELKQNPE-IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (527)
+.+..+|+.---+|....+... ..-+..-...++..+.+.|++++|+.+++...... +.+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 3456667666656655544310 01133345567788889999999999999999875 455677777888888899999
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+|...|+++... .+.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999876 33456778889999999999999999999998864 235678888999999999999999999988
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA 326 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (527)
...... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...+++....... +..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 776433 33344333 347889999999999999887643344555566677889999999999999999987533 577
Q ss_pred hHHHHHHHHHhcCCHhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 327 LCCKVIDLLCEEGKVED----ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
.+..+..++...|++++ |...++++....+ .+...+..+...+...|++++|...+++.....+.+...+..+..
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77888999999999985 8999999998764 477888999999999999999999999997777778888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPNVFT-YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK------TSFSLLIEGLY 475 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~ 475 (527)
++...|++++|+..++++.+. .|+... +..+..++...|+.++|+..|+++.+.. |+. .....+..++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHLPQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhchhhHHHHHHHHHHHHH
Confidence 999999999999999999876 455433 4445678899999999999999998743 331 23444555555
Q ss_pred hcCChhHHHHHHHHHHh-CCCCChhhHHH
Q 043284 476 ESGNEGEVGKVVSMATA-SGSVESDSWNF 503 (527)
Q Consensus 476 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 503 (527)
..+..++......++.- ....|...|+.
T Consensus 403 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 403 AVNLPPERLDWAWEVAGRQSGIERDEWER 431 (656)
T ss_pred hcCCccchhhHHHHHhcccccCChHHHHH
Confidence 66666655445555433 32456666653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=186.43 Aligned_cols=308 Identities=15% Similarity=0.122 Sum_probs=212.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc--ChhhHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC--GENLFITVIR 122 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 122 (527)
...+..+...|++++|+..|+.+++.+| .+..++..++..+...|++++|..+++.+...++... ....+..++.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDP---ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3445566677888888888888877655 3566778888888888888888888888776422111 1245667777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHHcCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN---VFTCNILIKALCKKD 199 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 199 (527)
.|...|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.......+. ...+..++..+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888887653 455677778888888888888888888887664221111 123455666777778
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777653 223556667777777888888888888877765332224556777777778888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---cCCHhHHHHHHHHHHhCCC
Q 043284 280 EMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE---EGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~ 356 (527)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++.+.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 77765 345555567777777778888888887777664 4566666666655553 4467777777777776655
Q ss_pred CCCHh
Q 043284 357 MPDNA 361 (527)
Q Consensus 357 ~~~~~ 361 (527)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 55544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-20 Score=185.32 Aligned_cols=412 Identities=10% Similarity=-0.028 Sum_probs=313.7
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
+.++.-..-.+.+....|+.++|++++.++.... +.....+..+..++...|++++|.++|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3566667777788889999999999999998632 3356678899999999999999999999998875 566778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRG 234 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 234 (527)
++..+...|++++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Confidence 999999999999999999999876 334555 88899999999999999999999998753 25566667788888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCH------HhHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----H
Q 043284 235 DIENAKRVFGDILDRGWVPDA------TTYTVLMDGYI-----KLGRL---TDAVKVMDEMEDN-GVEPNEV-TY----G 294 (527)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~ 294 (527)
..+.|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ .
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998886654 1221 11222222222 12234 7788888888854 1123221 11 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHhhHHHHHHHH
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYV-PSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP---DNAISSTIIHWL 370 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 370 (527)
..+..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|+..++.+.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1134456779999999999999887532 332 22235778999999999999999988754321 134456677788
Q ss_pred HHcCCHHHHHHHHHHHhcCCCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIP------------S---LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
...|++++|...++.+....|+ + ...+..++..+...|++++|+++++++... .+.+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 9999999999999998654432 2 234566778889999999999999999876 24457788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhh
Q 043284 436 IQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDS 500 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 500 (527)
...+...|++++|++.++++++. .|+ ...+...+..+.+.|++++|..+++.+.+..|.++.+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999985 365 5566777788999999999999999999988766544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-18 Score=177.70 Aligned_cols=459 Identities=11% Similarity=-0.046 Sum_probs=308.6
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+..+..++..|...|++++|+..++++++.+| .|...+..+.. .+++++|..+++++....|... .++..+
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP---~n~~~~~~La~----i~~~~kA~~~ye~l~~~~P~n~--~~~~~l 148 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP---GDARLERSLAA----IPVEVKSVTTVEELLAQQKACD--AVPTLR 148 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---ccHHHHHHHHH----hccChhHHHHHHHHHHhCCCCh--hHHHHH
Confidence 44568888999999999999999999987766 34444444322 2888888888888887755422 233222
Q ss_pred ----------------------------------------HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 121 ----------------------------------------IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 121 ----------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
.+.|.+.|++++|++++.++.+.+ +.+......+...|.
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLL 227 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 333444455555555555555544 233333444444444
Q ss_pred h-cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CCHHHHHHHH-----------
Q 043284 161 Q-NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PNLVTHTTIL----------- 227 (527)
Q Consensus 161 ~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~----------- 227 (527)
. .++ +++..+++. ..+.+...+..++..|.+.|+.++|.++++++...... |+..+|.-++
T Consensus 228 q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 228 AGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 4 233 444444321 12245666778888999999999999999998765322 4433322111
Q ss_pred -------------------HHH----------------------------------------------------------
Q 043284 228 -------------------GGY---------------------------------------------------------- 230 (527)
Q Consensus 228 -------------------~~~---------------------------------------------------------- 230 (527)
..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q 381 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQ 381 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHH
Confidence 111
Q ss_pred -----HhcCChHHHHHHHHHHHHC---CC---------------------------------------------------
Q 043284 231 -----VWRGDIENAKRVFGDILDR---GW--------------------------------------------------- 251 (527)
Q Consensus 231 -----~~~~~~~~a~~~~~~~~~~---~~--------------------------------------------------- 251 (527)
.+.|+.++|.++++..... +.
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 1224455555555444321 00
Q ss_pred ----------CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 252 ----------VP--DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 252 ----------~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 11 22333444444444 6677888878777765 456554444555567899999999999998664
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
.|+...+..+..++.+.|+.++|...++...+.++ .....+..+.......|++++|...+++.....| +...|..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-SANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33444456677888999999999999999988752 2333344444455566999999999999966554 6889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESG 478 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 478 (527)
+..++.+.|++++|+..+++..+. .| +...++.+..++...|++++|+..++++++.. +-+...+..++.++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999986 44 46677888889999999999999999999853 225667889999999999
Q ss_pred ChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 479 NEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
++++|...++++.+..+....+...... ....+++++.+.+++....
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999888755444443333 2235677777777766543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-21 Score=182.85 Aligned_cols=306 Identities=15% Similarity=0.111 Sum_probs=152.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--ChhhHHHHHHHHHcCCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP--NVFTCNILIKALCKKDD 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 200 (527)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.......+ ....+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445555666666666665543 23344555555555555555555555555543211100 01234444444555555
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555544431 12334444444444444444444444444444321111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
....+..+...+.+.|++++|...++++.+... .+...+..+...+.+.|++++|.++++++...++....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 001223334444445555555555555544321 12334444555555555555555555555544322223
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043284 361 AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 440 (527)
.++..++.+|...|++++|...++++.... |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEY-PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 344555666666666666666666664332 33344466666666667777777777666654 566666666665554
Q ss_pred c---cCCHHHHHHHHHHHHHCCCCCCHH
Q 043284 441 K---IGNAKEGIRILEEMLDKGCFPNKT 465 (527)
Q Consensus 441 ~---~g~~~~A~~~~~~~~~~~~~p~~~ 465 (527)
. .|+.++++.++++|.+.++.|++.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 346666777777666655555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-19 Score=174.93 Aligned_cols=447 Identities=11% Similarity=0.010 Sum_probs=328.8
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
.+......+-...++|+++.|+..|+++++..|...+ ..+ .++..+...|+.++|+..+++... +.+........
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~--av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG--QVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh--hHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHH
Confidence 3446667777889999999999999999888775322 222 778888888999999999999983 33335555556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++..+...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcc
Confidence 6779999999999999999999986 566788888889999999999999999999875 556556655555555566
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhH------HHHHHHH---H--hc
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTY------TVLMDGY---I--KL 268 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~ 268 (527)
+..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-.+. +.+....+ ..+++.- . ..
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7767999999999875 236777888889999999999998776653321 11111111 1111110 0 11
Q ss_pred CC---hhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 269 GR---LTDAVKVMDEMEDN-GVEPNE-V----TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 269 g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.+ .+.|+.-++.+... +..|.. . ...-.+.++...+++.++++.++.+...+......+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 34455555555541 112322 1 222345677889999999999999998876655667788899999999
Q ss_pred CHhHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC------------C--CH-HHHHH
Q 043284 340 KVEDACELWKRLLRKNC-----MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI------------P--SL-LTYNT 399 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~--~~-~~~~~ 399 (527)
++++|..++..+..... .++......|..++...+++++|..+++.+....| | |- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 99999999999876531 22333356788899999999999999999855322 1 11 23345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESG 478 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 478 (527)
++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|.+.++.+... .|+ ..+....+.++...|
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhh
Confidence 6777888999999999999998762 457888888999999999999999999777664 454 456677888888999
Q ss_pred ChhHHHHHHHHHHhCCCCChhh
Q 043284 479 NEGEVGKVVSMATASGSVESDS 500 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~ 500 (527)
++++|.++.+.+.+..|.+..+
T Consensus 499 e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 499 EWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hHHHHHHHHHHHHhhCCCchhH
Confidence 9999999999988887755543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-18 Score=169.48 Aligned_cols=439 Identities=13% Similarity=0.062 Sum_probs=322.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
.+.+....+....+.|+++.|+..|+++.+..|..+ ..++ .++..+...|+.++|+..+++..... +........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 444555556667899999999999999998755421 1233 78888889999999999999998321 23344444456
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
..+...|++++|+++|+++.+. .+.+...+..++..+...++.++|++.++++.... |+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchH
Confidence 7889999999999999999987 33456677788899999999999999999998873 6666665555555556777
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------HHHHHHH---H--ccCC
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTY------GVMIEAF---C--KGKK 305 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~ 305 (527)
.+|++.++++.+.. +.+...+..+..+..+.|-...|.++..+-... ..+....+ ...++.- . ..++
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 67999999999985 447788888899999999999999887764322 11111111 1111100 0 1122
Q ss_pred H---HHHHHHHHHHHHc-CCCCCH-----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 306 S---GEARNLLDDMLQR-KYVPSS-----ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 306 ~---~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
+ +.|+.-++.+... +..|.. ......+.++...+++.++++.++.+...+.+....+-..+..+|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 3 4455555555542 122322 222345667888999999999999999888665667888999999999999
Q ss_pred HHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHH
Q 043284 377 WEAKKLFDEFERGS------IPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGV-----------EPNV---FTYNMLI 436 (527)
Q Consensus 377 ~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~ 436 (527)
++|+.++..+.... +++......|..+|...+++++|..+++++.+... .||+ ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999983322 23444467899999999999999999999987311 1221 2344567
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--Hhchhh
Q 043284 437 QGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDS 514 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~ 514 (527)
..+...|++.+|.+.++++.... +-|......++..+...|++.+|.+.++.+....|.+..+........ .+++..
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 77899999999999999998753 347788889999999999999999999988887766555555444432 399999
Q ss_pred hHHHHHHHHhh
Q 043284 515 GAGALDELLVK 525 (527)
Q Consensus 515 a~~~~~~~l~~ 525 (527)
|+...+++++.
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-19 Score=167.57 Aligned_cols=478 Identities=15% Similarity=0.090 Sum_probs=256.0
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
+++.+.+-.-+.+.+..|+|..|+.+|..++...|...+++.. .+..++.+.|+.+.|+..|+++.+..|. +..++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~--~v~al 236 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPT--CVSAL 236 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChh--hHHHH
Confidence 4455566666666777888888888888888888887777533 3345667788888888888888876553 33333
Q ss_pred HHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CChhhHHHHHH
Q 043284 118 ITVIRNYGLA---GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV-PNVFTCNILIK 193 (527)
Q Consensus 118 ~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~ 193 (527)
..|...-... ..+..++.++...-..+ +.++.+.+.|...|...|+++.+..+...+....... .-...|..+.+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3333322222 23445555555554443 4556666666666666666666666666655431100 11234555666
Q ss_pred HHHcCCChHHHHHHHHhcccCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--
Q 043284 194 ALCKKDDVEGAIRVLDEMPSMGMVPNL--VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG-- 269 (527)
Q Consensus 194 ~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 269 (527)
+|-..|++++|..+|.+..+.. ++. ..+.-+...+.+.|+.+.+...|+...+.. +.+..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 6666666666666666555432 222 223345555666666666666666655542 223444444444444432
Q ss_pred --ChhHHHHHHHHHHHC-------------------------------------CCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 270 --RLTDAVKVMDEMEDN-------------------------------------GVEPNEVTYGVMIEAFCKGKKSGEAR 310 (527)
Q Consensus 270 --~~~~a~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (527)
..+.|..++.+..+. +..+.....|.+.......|++++|.
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 233344444333332 22334444455555555555555555
Q ss_pred HHHHHHHHc---CCCCCH------HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 043284 311 NLLDDMLQR---KYVPSS------ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKK 381 (527)
Q Consensus 311 ~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 381 (527)
..|.+.... ...++. .+-..+..++-..++.+.|.+.|..+.+..+. -...|..++......++..+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHH
Confidence 555554432 111111 11222333444444555555555555444211 12222222212222345556666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCCHHHH
Q 043284 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK-GVEPNVFTYNMLIQGFCK------------IGNAKEG 448 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~A 448 (527)
.+..+......++..+..+...+.....+..|.+-|+...+. ...+|..+...|...|.. .+..++|
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 666665545555555555555555555555555544444432 112455555445444321 2335566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
+++|.+.++.. +-|...-+.++-++...|++.+|..+|.++.+......++|-.+.. ...|++-.|.++|+..+.+
T Consensus 632 lq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777666643 2244455566666777777777777777776666555566666666 2337777777777776653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-17 Score=150.56 Aligned_cols=460 Identities=10% Similarity=0.044 Sum_probs=323.5
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC---CCCCcChhhHHHHHHHH
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN---PEIKCGENLFITVIRNY 124 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 124 (527)
--+|.+..-|+.|.++++.+.+ .++.+...|..-...-..+|+.+...+++.+.... .++..+...|..=...|
T Consensus 413 wlAlarLetYenAkkvLNkaRe---~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKARE---IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3345566666677777666632 23356666666666666667666666666554432 45555666666666666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE 202 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (527)
-..|..-.+..+.......|+... ..+|..-...|.+.+.++-|..+|....+. ++-+...|...+..--..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 666777777777766666654332 346666667777777777777777777665 3335556666666656677777
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
+-..+|++....- +-....|......+-..|+...|..++..+.+.... +...|-.-+.....+..++.|..+|.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777777653 234456666666777778888888888888777433 66777777778888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhh
Q 043284 283 DNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAI 362 (527)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (527)
.. .|+...|..-+...--.++.++|.+++++.++. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++..+..
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipL 721 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPL 721 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchH
Confidence 64 556666666666666678888888888877775 2323456677777788888888888888776654 3445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
|..+...--+.|++-+|..++++.....|.+...|...++.-.+.|+.+.|..++.+..+. ++.+...|..-|....+.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCc
Confidence 7777777777788888888888887777788888888888888888888888888777764 455666777777666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHH
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALD 520 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~ 520 (527)
++-......+++ +.-|+.+...+...++...++++|++.|+++.+.++..-++|..++. ..+|.-++-.+++.
T Consensus 801 ~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 801 QRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 665555555544 34577778888888999999999999999999999887888888777 55688888888887
Q ss_pred HHHh
Q 043284 521 ELLV 524 (527)
Q Consensus 521 ~~l~ 524 (527)
+...
T Consensus 876 ~c~~ 879 (913)
T KOG0495|consen 876 KCET 879 (913)
T ss_pred HHhc
Confidence 7643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-16 Score=138.48 Aligned_cols=437 Identities=10% Similarity=0.045 Sum_probs=322.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+...|...+..-..++++..|+.+|++++..+ ..+...|..-+.+-.+..++..|..++++.+..- |.-...|...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHH
Confidence 356677777777778888999999999998753 3467788888888889999999999999988753 2223455555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+..=-..|+...|.++|++... ..|+...|++.|+.-.+.+.++.|..+++..+-. .|++.+|.....--.+.|+
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 5555667999999999998875 4889999999999999999999999999988764 4899999888888889999
Q ss_pred hHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHH
Q 043284 236 IENAKRVFGDILDR-G-WVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN--EVTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 236 ~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 311 (527)
...+..+|..+++. | -..+...+.++...-.++..++.|.-+|+-..+.= +.+ ...|..+...--+-|+.....+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999888764 1 01123455566666667778899999998887762 222 3445445444445565544433
Q ss_pred H--------HHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-h-hHHHH--------HHHHHHc
Q 043284 312 L--------LDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN-A-ISSTI--------IHWLCKE 373 (527)
Q Consensus 312 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l--------~~~~~~~ 373 (527)
. ++.+...+ +.|-.+|...+......|+.+...++|++++..- +|-. . .+... +-.-...
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 33344433 3366677777888888899999999999998764 3322 1 11111 1112356
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTL----IAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (527)
.+.+.+.++++......|....|+.-+ +..-.++.+...|.+++...+ |.-|...+|...|..-.+.++++.+.
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 788999999998877666666555444 444457788999999999888 67889999999998889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 450 RILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS--VESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
.+|++.++.+ +.+..+|...+..-...|+.+.|..+|+.+..+.. .....|.+.+. ...|++++|+.+++++|+.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999999865 23556788888878888999999999999887664 23346888888 3349999999999999875
Q ss_pred c
Q 043284 526 N 526 (527)
Q Consensus 526 ~ 526 (527)
.
T Consensus 537 t 537 (677)
T KOG1915|consen 537 T 537 (677)
T ss_pred c
Confidence 3
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-18 Score=147.05 Aligned_cols=453 Identities=14% Similarity=0.057 Sum_probs=304.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCc--ChhhHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDT-YHSIIHKLARARAFDAVESLLTELKQNPE-IKC--GENLFITV 120 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~~l 120 (527)
..|++.|.......+|+..++-+++. ...||... -..+...+.+.+++.+|++.|+.++..-| +.- ...+.+.+
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivkn--kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKN--KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcc--cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 45566666677778888888877543 23344333 23456677788888899999888876522 211 12345566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----------CCChhhHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV-----------VPNVFTCN 189 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ 189 (527)
...+.+.|+++.|+..|+...+. .|+..+-..++-++...|+-++..+.|.+++...+. .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 66788889999999999888775 477666666666677788888888888888765432 12222222
Q ss_pred HHHH-----HHHcCC--ChHHHHHHHHhcccCCCCCCHHH-------------HHH--------HHHHHHhcCChHHHHH
Q 043284 190 ILIK-----ALCKKD--DVEGAIRVLDEMPSMGMVPNLVT-------------HTT--------ILGGYVWRGDIENAKR 241 (527)
Q Consensus 190 ~l~~-----~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~-------------~~~--------l~~~~~~~~~~~~a~~ 241 (527)
.-+. -.-+.+ +-++++-.-.++..--+.|+-.. +.- -...+.++|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2111 111111 11222222122222112232110 000 1124678888888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 242 VFGDILDRGWVPDATTYTVLMDGYIK--LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
++.-..+..-+.-...-+.|...+.- -.++.+|..+-+...... .-+......-.......|++++|.+.+++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 88877766433333333433333333 236777777666655332 223333333333445689999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
+..-....|+ +.-.+...|+.++|++.|-++... ...+..+...+...|.-..+...|++++-+.....|.|+..+..
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 4443333343 344567789999999999887654 23477788888999999999999999999998888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLI-EGLYESG 478 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g 478 (527)
|...|-+.|+-..|.+.+-.--.. ++-+..+...|...|....-+++++.+|+++.- ++|+..-|..++ .++.+.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999998876554433 466788888899999999899999999999876 679999988665 4556789
Q ss_pred ChhHHHHHHHHHHhCCCCChhhHHHHHHH
Q 043284 479 NEGEVGKVVSMATASGSVESDSWNFLLTR 507 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~ll~~ 507 (527)
++++|..+++...+..|.|.+-...+.+.
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999888888877773
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-15 Score=131.46 Aligned_cols=455 Identities=11% Similarity=0.067 Sum_probs=341.8
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
.++++..|+.+|++++..+. .+...|...+..-.++.....|+.+++++....| --...|..-+-.--..|++..
T Consensus 85 sq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhcccHH
Confidence 57888999999999976553 5777999999999999999999999999988633 245667766666677899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
|.++|++..+. .|+..+|.+.+..=.+.++.+.|..++++..- +.|++..|.-....-.+.|+...|..+|+...
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999876 79999999999999999999999999999885 47999999999998899999999999999876
Q ss_pred cC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHH--------HHH
Q 043284 213 SM-GM-VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD--ATTYTVLMDGYIKLGRLTDAVKV--------MDE 280 (527)
Q Consensus 213 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~ 280 (527)
+. |- .-+...+.+...--.++..++.|.-+|.-.++.- +.+ ...|..+...--+.|+.....+. |+.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 53 20 0122334444444456778999999999988873 223 45566666555566765555443 344
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-Hh-HHH--------HHHHHHhcCCHhHHHHHHHH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSS-AL-CCK--------VIDLLCEEGKVEDACELWKR 350 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~--------l~~~~~~~~~~~~a~~~~~~ 350 (527)
+.+.+ +.|-.+|--.+..-...|+.+...++|+..... ++|-. .. |.. .+-.-....+.+.+.++++.
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55443 457788888898888899999999999998875 34321 11 111 11122356899999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHH----HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043284 351 LLRKNCMPDNAISSTIIHWL----CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVE 426 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 426 (527)
.++. ++....++..+-..| .++.++..|.+++..... .-|-..++-..+..-.+.++++.+.+++++..+-+ +
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P 468 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P 468 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h
Confidence 9884 444555665554444 567899999999988854 33666788888888889999999999999999874 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 427 PNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC-FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 427 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
-|..+|......-...|+.+.|..+|+-+++... .-....|...++.-...|.++.|..+++...+..+.- .+|-++.
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA 547 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFA 547 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHH
Confidence 3667888888878889999999999999987421 1122345566666678899999999999998877533 3777766
Q ss_pred HHHH-------h-----------chhhhHHHHHHHHh
Q 043284 506 TRIV-------S-----------DLDSGAGALDELLV 524 (527)
Q Consensus 506 ~~~~-------~-----------~~~~a~~~~~~~l~ 524 (527)
.-.. + +..+|+++++++..
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6211 3 56677888877653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-15 Score=140.61 Aligned_cols=368 Identities=13% Similarity=0.042 Sum_probs=279.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
-..+..++.+|++++|..++..+++..| .+..+|..|+..|...|+.+++...+-.+.-..|. +...|..+....
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls 217 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Confidence 3445556678999999999999999888 47789999999999999999999988877765444 668999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChh----hHHHHHHHHHcCCC
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVF----TCNILIKALCKKDD 200 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 200 (527)
.+.|++++|.-.|.+.++.. |++...+-.-+..|-+.|+...|.+-|.++....+ +.+.. .-...++.+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999987 56767777788899999999999999999987622 11222 22334566777888
Q ss_pred hHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhH---------------------
Q 043284 201 VEGAIRVLDEMPSMG-MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTY--------------------- 258 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------- 258 (527)
-+.|.+.++.....+ -.-+...++.++..+.+...++.+.............+|...|
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 899999998877632 2235567888999999999999999888877662222222211
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043284 259 -----TVLMDGYIKLGRLTDAVKVMDEMEDNGV--EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKV 331 (527)
Q Consensus 259 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (527)
-.++-++...+..+....+......... .-+...|.-+..+|.+.|++.+|+.+|..+......-+...|..+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 1233344555555555555555655553 335678888999999999999999999999987666678889999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---------CCCCCHHHHHHHHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER---------GSIPSLLTYNTLIA 402 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~ 402 (527)
..+|...|.++.|.+.|+.++... +.+...-..|...+.+.|+.++|.+.++.+.. ...|+.........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999999875 33566667788889999999999999998631 12234444445556
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043284 403 GMCESAELTEAGRLWDDM 420 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~ 420 (527)
.+.+.|+.++-+.+...|
T Consensus 535 ~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 667777777655444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-15 Score=127.56 Aligned_cols=335 Identities=17% Similarity=0.234 Sum_probs=225.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
+..++.++|.+.++--..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 567888899999998889999999988887777788888988887654332 2778888888888999999999999
Q ss_pred HHHhcCChhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCCCC----CHHhHHH
Q 043284 264 GYIKLGRLTDA----VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE-ARNLLDDMLQ----RKYVP----SSALCCK 330 (527)
Q Consensus 264 ~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~ 330 (527)
+..+.|+++.| .+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++.. ..+.| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999977664 5667788888999999999999988888877744 4455555543 22222 3445667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHH
Q 043284 331 VIDLLCEEGKVEDACELWKRLLRKN----CMPD---NAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIA 402 (527)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~ 402 (527)
.+..|.+..+.+.|.++..-+.... +.|+ ...|..+..+.++....+.-...|+.+ .....|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 7788888888888888776654321 1122 223455666667777788888888888 4445577788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-C-------------------HHHHHH-HHHHHHHCCCC
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG-N-------------------AKEGIR-ILEEMLDKGCF 461 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~-------------------~~~A~~-~~~~~~~~~~~ 461 (527)
+....|.++-..++|..+...|..-+...-..++..+++.. . +.++.+ .-.++.. ..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QD 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--cc
Confidence 88888888888888888877664444433333333333322 1 111111 1112222 22
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CChhhHHHHHHH-----HHhchhhhHHHHHHHHh
Q 043284 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS--VESDSWNFLLTR-----IVSDLDSGAGALDELLV 524 (527)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ll~~-----~~~~~~~a~~~~~~~l~ 524 (527)
......+..+..+.|.|+.++|.+++....+++. |.....++++.. ...+.-.|..+++-+++
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666678888888888888888765553 444455544431 12555566666555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-13 Score=125.69 Aligned_cols=453 Identities=11% Similarity=0.032 Sum_probs=371.7
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhccc--CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCcChhh
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKF--HPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPE-IKCGENL 116 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 116 (527)
++..+-.-+..=-++|+.+...++.++.+.. ..|+..+-..|..-...|-+.|..-.+..+........- ......+
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 3455655556666789999999998877632 356778888999999999999999999888888876411 1113457
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
|..-...|.+.+.++-|+.+|...++.- +.+...|......--..|..+....+|++.... .+-....|......+-
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKW 595 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHH
Confidence 8889999999999999999999998864 566778888887777889999999999999876 4445667878888888
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
..|+...|..++....+.+.. +...|-..+..-..+.++++|..+|.+.... .|+...|.--+...--.+..++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 899999999999999887533 6778999999999999999999999998775 5677888777777778899999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 043284 277 VMDEMEDNGVEPNE-VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN 355 (527)
Q Consensus 277 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (527)
++++..+. -|+- ..|..+...+-+.++.+.|.+.|..-.+. ++.....|..+...-.+.|..-.|..++++..-.+
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99998876 4554 56777888889999999999988876654 34456677777778788899999999999999887
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043284 356 CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNML 435 (527)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 435 (527)
+. +...|...+++-.+.|+.+.|..+..+..+..+.+...|..-|....+.++-......+++. .-|++....+
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllai 823 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAI 823 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHH
Confidence 54 88899999999999999999999999998888889999998888887777755555444433 5578888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 436 IQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 436 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
...+....++++|.+.|.+.++.+ || .++|..+...+.+.|.-++-.+++.+.....|.--..|.++-..+.
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHH
Confidence 889999999999999999999864 44 5788889999999999999999999988888777777877666444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-14 Score=122.82 Aligned_cols=431 Identities=13% Similarity=0.146 Sum_probs=231.5
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH--hcCCch-HHHHHHHHhhhCCCCCcChhh
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA--RARAFD-AVESLLTELKQNPEIKCGENL 116 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~A~~~~~~~~~~~~~~~~~~~ 116 (527)
+..+-+.|+.+ ..+|.++++.-+|+.|.+ .++..++..-..+++.-+ ...+.- .-.+.|-.+.+.... +..+
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~--e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~s 189 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRS--ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--STSS 189 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc--cccc
Confidence 33455555544 578999999999999954 444555555555544333 222222 112233333322111 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
| +.|.+.+ -+|+. . +.+..++..+|.++++-...+.|.+++++.... ..+.+..+||.+|.+-.
T Consensus 190 W--------K~G~vAd--L~~E~-~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S 253 (625)
T KOG4422|consen 190 W--------KSGAVAD--LLFET-L----PKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS 253 (625)
T ss_pred c--------ccccHHH--HHHhh-c----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH
Confidence 1 2333322 12222 1 445566667777777776777777777666554 33456666666665433
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN----AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
-. ...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..
T Consensus 254 ~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 254 YS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred hh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 22 225666666666666777777777777777766543 3455666666677777777777666666666553
Q ss_pred H-HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHhHHHHHHHHH
Q 043284 273 D-AVKVMDEMED----NGVE----PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK----YVPS---SALCCKVIDLLC 336 (527)
Q Consensus 273 ~-a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~ 336 (527)
+ +..++.++.. ...+ .|...+...+..|.+..+.+-|.++-.-..... +.|+ ..-|..+..+.+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3 2333333321 1111 134445555566666666666655443332210 1111 123445556666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcC-------
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESA------- 408 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~------- 408 (527)
+....+.....|+.+.-.-.-|+..+...++++..-.|.++-..++|..+ ..+...+......++..+++.+
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 66666666666766666555566666666666666666666665555554 2221222222222222222211
Q ss_pred --------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC---CHHHHHHH
Q 043284 409 --------------ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-CFP---NKTSFSLL 470 (527)
Q Consensus 409 --------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p---~~~~~~~l 470 (527)
-.+....--.+|.+. .-.....+..+-.+.+.|..++|.+++.-..+.+ -.| ......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 111111222344444 3344556666677788888888888888875432 223 33334456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 471 IEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
++.-.+.....+|..+++-|...+.+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 666677788888888888886665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-15 Score=134.48 Aligned_cols=438 Identities=12% Similarity=0.052 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS----VRSLNT 154 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 154 (527)
..+..+..-|.......+|+..|+-+.++.-.+..-..-..+...+.+...+.+|++.++-.++.-...+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3556677777778888899999998887633222223334667778889999999999988877522222 335566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCC------------CHHH
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVP------------NLVT 222 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p------------~~~~ 222 (527)
+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|......| +...
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 666788999999999999998875 7887776677777888899999999999987643222 2222
Q ss_pred HHHHHH-----HHHhc--CChHHHHHHHHHHHHCCCCCCHH-----h--------H--------HHHHHHHHhcCChhHH
Q 043284 223 HTTILG-----GYVWR--GDIENAKRVFGDILDRGWVPDAT-----T--------Y--------TVLMDGYIKLGRLTDA 274 (527)
Q Consensus 223 ~~~l~~-----~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-----~--------~--------~~l~~~~~~~g~~~~a 274 (527)
.+..+. -.-+. .+.++++-.-..++.--+.|+-. + + ..-.--+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 222221 11111 11222222212222111122210 0 0 1112346788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH-H-ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAF-C-KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
+++++-+.+..-+.-...-+.|-..+ . .-.++..|.++-+..+..+ ..+......-.......|++++|.+.|.+.+
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 99998887653332222223332222 2 2446777777776665542 2234433333444456799999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043284 353 RKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTY 432 (527)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 432 (527)
..+.... .....+...+-..|++++|+..|-++......+..++..+...|-...+...|++++.+.... ++.|+..+
T Consensus 518 ~ndasc~-ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 8753322 333334556778899999999999986655578888889999999999999999999888765 56678889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH---
Q 043284 433 NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--- 509 (527)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--- 509 (527)
..|...|-+.|+-..|.+.+-+--.. ++-+..+...|...|....-+++|+.+|+++ ..-.|+..-|...+..|.
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka-aliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA-ALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH-HhcCccHHHHHHHHHHHHHhc
Confidence 99999999999999999887665443 5567888888998999999999999999997 455688889999999765
Q ss_pred hchhhhHHHHHHHHh
Q 043284 510 SDLDSGAGALDELLV 524 (527)
Q Consensus 510 ~~~~~a~~~~~~~l~ 524 (527)
|++.+|...++.+..
T Consensus 674 gnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHR 688 (840)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-15 Score=131.89 Aligned_cols=427 Identities=11% Similarity=0.024 Sum_probs=273.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
++..+.-++++|++++|++.|.+++...|. .+.-|.....+|...|+|++..+--...++..|. -...+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~--Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD---EPIFYSNRAACYESLGDWEKVIEDCTKALELNPD--YVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH--HHHHHHHHHHH
Confidence 455677788999999999999999877663 2667888888899999999999988888886443 44567777788
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+-..|++++|+.=..-..-.+--.+..+--.+=+.+-+.+ ..++.+.+.. .+..+-|+.....+....+...-
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~--nr~p~lPS~~fi~syf~sF~~~~---- 265 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKE--NRPPVLPSATFIASYFGSFHADP---- 265 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcc--cCCCCCCcHHHHHHHHhhccccc----
Confidence 8888998888754443322221112111111111221211 1222222220 12123344333333333222100
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCC---C---CCC------HHhHHHHHHHHHhcCC
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVW-RGDIENAKRVFGDILDRG---W---VPD------ATTYTVLMDGYIKLGR 270 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~---~---~~~------~~~~~~l~~~~~~~g~ 270 (527)
...+...+-+.|...-..+-..+.. ...+..|.+.+.+-.... . ..| ..+.......+.-.|+
T Consensus 266 ----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 266 ----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred ----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0000000000111111111111111 012333333332221110 0 011 1122222234445689
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 043284 271 LTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKR 350 (527)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (527)
.-.|..-|+..++.... +...|..+..+|...++.++....|+.....+.. ++.+|..-.+...-.++++.|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887533 3333778888899999999999999999887654 677888888888889999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 043284 351 LLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-- 428 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-- 428 (527)
.+..++. +...|..+.-+..+.+.++++...|++.....|.-+..|+.....+..+++++.|.+.|+..++. .|+
T Consensus 420 ai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~ 496 (606)
T KOG0547|consen 420 AISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREH 496 (606)
T ss_pred HhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccc
Confidence 9887633 56667777777788999999999999998888889999999999999999999999999998865 333
Q ss_pred -----HHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 429 -----VFTY--NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 429 -----~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
...+ ..++..-.+ +++..|..+++++.+. .|.. ..+..|+..-.+.|+.++|+++|++....-
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2222 122222233 8999999999999984 4544 568899999999999999999999875443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-13 Score=130.86 Aligned_cols=370 Identities=12% Similarity=0.095 Sum_probs=285.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
....+..+...|++++|.+++.++.+..|. ....|..|...|-+.|+.+++...+-..--.+ +.|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 333444455569999999999999987554 77899999999999999999999887776665 677899999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH----HHHHHHHHHHhcCCh
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV----THTTILGGYVWRGDI 236 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~ 236 (527)
+.|+++.|.-.|.+.++. -+++...+---+..|-+.|+...|.+.|.++.....+.|.. ....+++.+...++.
T Consensus 219 ~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999876 34455555566778999999999999999998875322322 233456677788888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------------------
Q 043284 237 ENAKRVFGDILDR-GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP--------------------------- 288 (527)
Q Consensus 237 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------------- 288 (527)
+.|.+.++..... +-..+...++.++..+.+...++.+......+......+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999888763 223455678889999999999999998888776622222
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK--YVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
+... ..++-++...+..+....+.....+.+ +.-+...|..+..++.+.|.+..|+.++..+.....--+..+|..+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 123334445555555555566666655 3345678889999999999999999999999987666677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE--------KGVEPNVFTYNMLIQG 438 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l~~~ 438 (527)
..+|...|..+.|...|+.+....|.+...-..|...+.+.|+.++|.+.+..+.. .+..|+..........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999998652 2334444444555667
Q ss_pred HHccCCHHHHHHHHHHHH
Q 043284 439 FCKIGNAKEGIRILEEML 456 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~ 456 (527)
+...|+.++-+.....|+
T Consensus 536 l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 788888887666555555
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-13 Score=117.82 Aligned_cols=333 Identities=13% Similarity=0.011 Sum_probs=188.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH
Q 043284 145 VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 224 (527)
...|...+......+.+.|....|...|...... .+-.-..|..|... ..+.+.+..+...+... .....--
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~---~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSEL---ITDIEILSILVVGLPSD---MHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHh---hchHHHHHHHHhcCccc---chHHHHH
Confidence 3455555555556666777788888877777654 12222333333222 22222222222111110 0011111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHc
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE--PNEVTYGVMIEAFCK 302 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 302 (527)
-+..++-.....+++.+-.......|++.+...-+....+.....|+++|+.+|+++.++.+- -|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233344455566677766666667666655555555555666667777777777777766321 144555555432211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
+. .+.++.+-.-.-.+.-+.|...+...|.-.++.++|...|++.++.++. ....|..+.+-|....+...|...
T Consensus 312 --~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 --KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred --hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1111111111101223445555666666667777777777777766533 445566666677777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
++.+....|.|...|-.++++|...+.+.-|+-+|++.... .+.|...|..|..+|.+.++.++|++.|.++...| ..
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 77776666667777777777777777777777777776654 13356667777777777777777777777776654 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+...+..|++.|-+.++.++|...+++..+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445666677777777777777666666544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-14 Score=124.17 Aligned_cols=425 Identities=11% Similarity=0.034 Sum_probs=281.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+...+.-+.+.|.+++|++.|..+.+..|. .+..|.....+|...|++++..+--.+.++.+ +.-+.++..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 344456688999999999999999987543 26788899999999999999999999998875 333667888888999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG--MVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
..|++++|+.=..-..-..++. |..+ ..++.-..+.--...+.+-+. +.+ +.|+.....+....+...-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~--- 266 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK--- 266 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc---
Confidence 9999998875444433322222 1111 112221111111222222222 222 33555555554444321100
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHC---CCC---CC------HHHHHHHHHHHHccCC
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKL-GRLTDAVKVMDEMEDN---GVE---PN------EVTYGVMIEAFCKGKK 305 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~---~~------~~~~~~l~~~~~~~~~ 305 (527)
..+...+.+.|...-..+=..+... ..+..|.+.+.+-... ... .| ..+...-...+.-.|+
T Consensus 267 -----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 267 -----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0000000001111111111111110 1233333333322110 000 11 1122222223445788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 043284 306 SGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDE 385 (527)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (527)
.-.|..-|+........++ ..|..+..+|...++.++..+.|+...+.++. ++.+|..-.+.+.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988765533 33777888899999999999999999998744 777888888888889999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----C
Q 043284 386 FERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-----C 460 (527)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 460 (527)
.....|.+...|..+..+..+.++++++...|++.++. ++.-+..|+.....+..+++++.|.+.|+.+++.. +
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 98888889999999999999999999999999999986 55568899999999999999999999999998732 1
Q ss_pred CCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 461 FPNKTSF--SLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 461 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
..+...+ -.++..-++ +++..|..+++++.+.+|.-...+..+.. ...|+.++|.+++++.+.+
T Consensus 499 ~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1122222 122222233 89999999999999998877777777777 3349999999999997643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-13 Score=117.53 Aligned_cols=440 Identities=14% Similarity=0.086 Sum_probs=302.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH---------------hcCCchHHHHHHHHhhhC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA---------------RARAFDAVESLLTELKQN 107 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~A~~~~~~~~~~ 107 (527)
....++..++....++.|.-.++.... ....|..+...+. ....+..-...|..+.+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s-------~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~ 152 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS-------KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKP 152 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch-------HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhH
Confidence 346789999999999999988876621 1112222211111 111222222222222111
Q ss_pred -----CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 043284 108 -----PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV 182 (527)
Q Consensus 108 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 182 (527)
.+...|...+......+.+.|..+.|+..|...+..- |..=.+|..|.... .+.+.+..+...+ +
T Consensus 153 le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l------~ 222 (559)
T KOG1155|consen 153 LESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGL------P 222 (559)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcC------c
Confidence 1222244444455556677889999999998887642 33444454444433 2223222222111 1
Q ss_pred CChhh--HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHhH
Q 043284 183 PNVFT--CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW--VPDATTY 258 (527)
Q Consensus 183 ~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 258 (527)
.|... --.+..++....+.++++.-.......|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|
T Consensus 223 ~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 223 SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 12111 1224456666778899999999998888876666666666777788999999999999998842 1256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (527)
..++-. +... ..+..+.+-...--+--..|...+.+.|+-.++.++|...|+..++.+.. ....|+.+..-|...
T Consensus 303 SN~LYv--~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLYV--KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHH--Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHh
Confidence 766543 2221 11222222111101234567778888999999999999999999997644 567788889999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWD 418 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 418 (527)
++...|.+.++.+++.+ +.|-..|-.+.++|.-.+...-|+-.|++.....|.|...|.+|+.+|.+.++.++|++-|.
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999986 45889999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 419 DMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD----KGCFPN--KTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 419 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+....| ..+...+..+.+.|-+.++..+|...|++.++ .|...+ .....-|...+.+.+++++|..+......
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999875 34678899999999999999999999998885 233322 22333466778899999999988777655
Q ss_pred CCCCChhhHHHHHHH
Q 043284 493 SGSVESDSWNFLLTR 507 (527)
Q Consensus 493 ~~~~~~~~~~~ll~~ 507 (527)
. .+...--+.|++.
T Consensus 536 ~-~~e~eeak~LlRe 549 (559)
T KOG1155|consen 536 G-ETECEEAKALLRE 549 (559)
T ss_pred C-CchHHHHHHHHHH
Confidence 4 3444444555553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-14 Score=131.36 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=75.0
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWD 418 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 418 (527)
.+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+ .+++.... ++.+....++.+++++..+
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHH
Confidence 3344444444444332 123445555555555666666666666655533 23333222 1222233455666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 419 DMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 419 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
...+.. +-|...+..+...|.+.|++++|.+.|+++.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555441 223334555555666666666666666666653 3565555566666666666666666666553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-13 Score=131.17 Aligned_cols=290 Identities=9% Similarity=0.034 Sum_probs=172.2
Q ss_pred cCCChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNL-VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
..|+++.|.+.+.+..+.. |+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566777777666655542 332 2333444555666777777777766655421211223333456666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCCHhHHHHHHHHHH
Q 043284 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL---CEEGKVEDACELWKRLL 352 (527)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~ 352 (527)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+...+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776654 2245566666667777777777777777776665432221111111111 22222222233444443
Q ss_pred hCCC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043284 353 RKNC---MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTY--NTLIAGMCESAELTEAGRLWDDMVEKGVEP 427 (527)
Q Consensus 353 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 427 (527)
+..+ +.++..+..++..+...|+.++|..++++..+..+++.... ..........++.+.+.+.+++..+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 3322 13667777777788888888888888888755444444221 11222223456777788888777765 34
Q ss_pred C-H--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 428 N-V--FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 428 ~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+ + ....++.+.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3 45567788888888888888888854433356888888888888888888888888888753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-13 Score=129.53 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=219.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH--HHHHHHHhcCChHH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT--TILGGYVWRGDIEN 238 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~ 238 (527)
.|+++.|.+.+...... .+++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 69999999888876543 122333 333345558899999999999999875 35544332 34668889999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE-------VTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 311 (527)
|.+.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998886 447788889999999999999999999999987654222 123333444444555566666
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 043284 312 LLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI 391 (527)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (527)
+++.+... .+.++.....+...+...|+.++|.+++++..+. .++... .++.+....++.+++.+..+...+..|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66666443 2447778888899999999999999999999885 345432 233344456999999999999988888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|...+..+...+...+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999976 79999999999999999999999999998865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-13 Score=131.14 Aligned_cols=292 Identities=12% Similarity=0.104 Sum_probs=184.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNV-FTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (527)
..|+++.|.+.+.+..+. .|+. ..+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 456777777777665543 3332 223334555666677777777777665542111122333345666667777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHccCCHHHHHHHHHH
Q 043284 240 KRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYG-VMIE---AFCKGKKSGEARNLLDD 315 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~ 315 (527)
.+.++.+.+.. +-+...+..+...+...|++++|.+.++.+.+.++. +...+. .-.. .....+..++..+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777664 335566667777777777777777777777766533 222221 1111 11222223333344444
Q ss_pred HHHcCC---CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 043284 316 MLQRKY---VPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS-STIIHWLCKEGKIWEAKKLFDEFERGSI 391 (527)
Q Consensus 316 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (527)
+....+ +.+...+..+...+...|+.+.|.+.+++..+..+......+ ..........++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 444322 136677777788888888888888888888886533221111 1111222335777888888888877777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 392 PSL--LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 392 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777 778889999999999999999999544434578888888999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=145.53 Aligned_cols=263 Identities=15% Similarity=0.176 Sum_probs=98.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.++.++.+.|++++|+++++....... .+.+...|..+.......++++.|...++++...++. +...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc--ccccccccccc-c
Confidence 557888888888888888865433220 1234556666666777788888888888888775433 44456666666 6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHH
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAI 205 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 205 (527)
..+++++|.++++...+. .+++..+..++..+...++++++..+++.+......+++...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 788888888888776554 355666677777888888888888888887655444556777777888888888888888
Q ss_pred HHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 206 RVLDEMPSMGMVP-NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 206 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
+.+++..+.. | |......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|+.+|++..+.
T Consensus 167 ~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 8888887764 4 46667777778888888888777777776653 445566777788888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 285 GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
. +.|......+..++...|+.++|.++..+...
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp S-TT-HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccccc
Confidence 3 33667777777888888888888877766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-13 Score=120.35 Aligned_cols=455 Identities=13% Similarity=0.024 Sum_probs=322.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC
Q 043284 34 PIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG 113 (527)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 113 (527)
...+..+..-+..+.+-+..+.++.-|.-+-+++.... -++....-+++.+.-.|++++|..++..-.- . ..+
T Consensus 9 ~~~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~----~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l-e--~~d 81 (611)
T KOG1173|consen 9 TLADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT----NDPADIYWLAQVLYLGRQYERAAHLITTYKL-E--KRD 81 (611)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc----CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh-h--hhh
Confidence 34444555667788888888999999999988884332 4556667778888888999999888876543 1 225
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH----HhcC---------CCCC-----------HHHHHHHHHHHHhcCCHHHHH
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRI----EKFN---------VQRS-----------VRSLNTLLNALVQNKRYDLVH 169 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---------~~~~-----------~~~~~~l~~~~~~~g~~~~a~ 169 (527)
.........++.+..++++|..++... .... +.++ ...+..-...|....+.++|.
T Consensus 82 ~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 82 IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHH
Confidence 666667778888899999999988722 1100 0011 011111223455566778888
Q ss_pred HHHHHhhhcCCCCCChhhHHH---HHHHHHcC-----------------C-ChHHHHHHHHh----ccc-----------
Q 043284 170 LMFKNSRHKFKVVPNVFTCNI---LIKALCKK-----------------D-DVEGAIRVLDE----MPS----------- 213 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~-----------------~-~~~~A~~~~~~----~~~----------- 213 (527)
..|.+.... |+..|.. ++....-. + +.+.-..+|+- +..
T Consensus 162 ~~Y~~Al~~-----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 162 DKYKEALLA-----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHhc-----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 888776643 3333322 22221111 0 11111112221 100
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043284 214 -MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 214 -~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
.+..-+......-..-+...+++.+..++.+.+.+.. ++...++..-|.++...|+..+-..+=.++.+.- +-...+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 0112233344445556778899999999999998874 5577777777889999999998888888888763 346789
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (527)
|-.+...|...|+.++|.+.|.+....+.. -...|......++-.+..++|...+..+.+.-.. ...-+.-+..-|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHH
Confidence 999999999999999999999998775433 2346777888999999999999999888775211 22223345566888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHccCCHH
Q 043284 373 EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK--GVEPN----VFTYNMLIQGFCKIGNAK 446 (527)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~ 446 (527)
.++...|.+.|.+.....|.|+..++-+.......+.+.+|..+|+..... .+.+. ..+++.|..+|.+.+.++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999999999998888889999999999888999999999999987743 11222 345788999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
+|+..+++.+... +-+..++..++-.|...|+++.|.+.|.++....|. ......++.
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 9999999999863 457889999999999999999999999999888754 445555555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=142.56 Aligned_cols=261 Identities=16% Similarity=0.157 Sum_probs=85.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRG-WVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG 303 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (527)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555566666666666665443332 1234444444555555666666666666666654322 34445555554 566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN-CMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
+++++|.+++....+.. ++...+...+..+...++++++..+++.+.... .+.+...+..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666554432 344445555666666677777777766655432 234555666666667777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
+++.....|.|....+.++..+...|+.+++..+++...+.. +.|+..+..+..++...|+.++|+.+|++..... +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 777765566666667777777777777777666666665542 3344556666777777777777777777766642 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
|+.....++.++...|+.++|.++..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55566667777777777777777666653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-12 Score=119.07 Aligned_cols=423 Identities=11% Similarity=0.042 Sum_probs=299.7
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-CC--------
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-PE-------- 109 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-------- 109 (527)
-+|..-.-+++++.-.|++++|..+...- +.. ..+..........+.+..+|++|..++...... .+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLE---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 44555667999999999999998887655 112 346777788888899999999999998832111 00
Q ss_pred --------------CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------------
Q 043284 110 --------------IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN------------- 162 (527)
Q Consensus 110 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 162 (527)
......++..-...|....++++|...|.+....++ .....+..++....-.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 000111111122345556678888888877765432 2222333332222111
Q ss_pred -----CCHHHHHHHHHHh----hhc-----------CCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHH
Q 043284 163 -----KRYDLVHLMFKNS----RHK-----------FKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVT 222 (527)
Q Consensus 163 -----g~~~~a~~~~~~~----~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 222 (527)
.+.+....+|+-. ... .+...+........+-+...+++.+..++++...+.. ++....
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~ 280 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPC 280 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcch
Confidence 1111222233211 000 0122234445555667778899999999999988764 456667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (527)
+..-|.++...|+..+-..+=.++.+.- |..+.+|-++.-.|...|...+|.+.|.+....+. .=...|..+...|.-
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAG 358 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhh
Confidence 7777778999999988888888888873 55778999999999999999999999999876531 135789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
.+..++|+..+....+.-. -..--+..+..-|.+.++.+.|.+.|..+.... +.|+.+.+.+.-.....+.+.+|..+
T Consensus 359 e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred cchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHH
Confidence 9999999999988776311 111222334556788999999999999998874 55888888888888888999999999
Q ss_pred HHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 383 FDEFER---GSIP----SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455 (527)
Q Consensus 383 ~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (527)
|+.... ...+ -..+++.|+.+|.+.+.+++|+..+++.... .+.+..++.++.-.|...|+++.|++.|.+.
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 998732 1111 2345889999999999999999999999876 3557889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q 043284 456 LDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 456 ~~~~~~p~~~~~~~l~~~~ 474 (527)
+- +.|+..+...++..+
T Consensus 516 L~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 516 LA--LKPDNIFISELLKLA 532 (611)
T ss_pred Hh--cCCccHHHHHHHHHH
Confidence 87 568887766666533
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-11 Score=111.23 Aligned_cols=468 Identities=14% Similarity=0.140 Sum_probs=287.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
|..+-..+..+..||++..-+..|++++..-|- ..-...|-..+......+-.+.+..++++.++.. +..-..-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHH
Confidence 345556666777888888888888888765542 2233467777777888888888888888888753 3345566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhcCCCCCC--hhhHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKF------NVQRSVRSLNTLLNALVQNKRY---DLVHLMFKNSRHKFKVVPN--VFTCN 189 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~--~~~~~ 189 (527)
+..+...+++++|-+.+...+.. ..+.+...|..+.+..+++-+. -....+++.+..+ -+| ...|+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~ 252 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWC 252 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHH
Confidence 77778888888888888776543 1244556666666666654322 2334455555544 223 45789
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHH
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR----------------G------DIENAKRVFGDIL 247 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~ 247 (527)
+|.+.|++.|.+++|.++|++.... ..+...|..+...|+.- | +++-.+..|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999987664 23444555555554421 1 1233334444444
Q ss_pred HCCC-----------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHH
Q 043284 248 DRGW-----------VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN------EVTYGVMIEAFCKGKKSGEAR 310 (527)
Q Consensus 248 ~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~ 310 (527)
.... +.+...|..-.. ...|+..+-...|.++.+. +.|. ...|..+...|-..|+.+.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 3321 112333333222 2345666777777776653 2221 246777888888899999999
Q ss_pred HHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-----------------CHhhHHHHHHHH
Q 043284 311 NLLDDMLQRKYVPS---SALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP-----------------DNAISSTIIHWL 370 (527)
Q Consensus 311 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~ 370 (527)
.+|++..+...+.- ..+|......-.+..+++.|+++.+.+......| +..+|...+...
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99988877543321 3455555666667788888888888765432111 122344445555
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc---cCCHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV-FTYNMLIQGFCK---IGNAK 446 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~ 446 (527)
-..|-++....+++++......++......+..+-.+.-++++.+++++-+..=..|+. ..|+..+..+.+ ....+
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 56677888888888884433344444444455555667788888888776654223443 356655554432 33578
Q ss_pred HHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCC--ChhhHHHHHHHHH---hchhhhHHHH
Q 043284 447 EGIRILEEMLDKGCFPNKTS--FSLLIEGLYESGNEGEVGKVVSMATASGSV--ESDSWNFLLTRIV---SDLDSGAGAL 519 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~ll~~~~---~~~~~a~~~~ 519 (527)
.|..+|+++++ |++|...- |......--+-|....|.++++++...-.+ --..|+.++.... | ....+..+
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHH
Confidence 88888888888 56665422 333333334558888888888887665542 2235676666332 3 33445555
Q ss_pred HHHHh
Q 043284 520 DELLV 524 (527)
Q Consensus 520 ~~~l~ 524 (527)
+++++
T Consensus 646 ekaIe 650 (835)
T KOG2047|consen 646 EKAIE 650 (835)
T ss_pred HHHHH
Confidence 55554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-13 Score=113.95 Aligned_cols=290 Identities=13% Similarity=0.159 Sum_probs=173.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh--hHHHHHHHHHhcCChh
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN--LFITVIRNYGLAGRPE 131 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 131 (527)
..+.++|...|-.+++.+| .+.++...++..+.+.|..+.|+.+.+.+.+.+....+.. +...+.+-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~---~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP---ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc---hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 5667777777777766554 3555666777777777777777777777776533322222 3345666677777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHHcCCChHHHHHHH
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN---VFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
.|.++|..+.+.+ .--..+...++..|-...+|++|++.-+++.+..+.+.+ ...|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777777776643 344556667777777777777777777766554222222 223555555666666777777777
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043284 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP 288 (527)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (527)
.+..+.+. ..+..-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+. .+
T Consensus 204 ~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~ 280 (389)
T COG2956 204 KKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NT 280 (389)
T ss_pred HHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cC
Confidence 77666532 1333444556666777777777777777776654444455666667777777777777777766665 23
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHhHHHHHHHHHH
Q 043284 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE---GKVEDACELWKRLL 352 (527)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 352 (527)
+...-..+........-.+.|..++.+-+.. .|+...+..++...... |...+....+..|.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333344444444444455555555444443 46666666666554432 23444444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-12 Score=111.50 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=173.1
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKR 241 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (527)
.|+|.+|+++..+-.+. +. .....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-...+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 46666666666664433 11 12333444455555666666666666666654223444555555566666677777776
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHH
Q 043284 242 VFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE-------VTYGVMIEAFCKGKKSGEARNLLD 314 (527)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 314 (527)
-+.++.+.+. -++.......++|.+.|++.....+..++.+.|.-.+. .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6666666642 35556666666777777777777777777666544332 344445544444444444444444
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH
Q 043284 315 DMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL 394 (527)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (527)
..... .+.++..-..++.-+.+.|+.++|.++..+..+++..+.. ...-.+.+-++...-.+..+...+..+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 44332 2334555556666677777777777777777776554441 112234455666666666666655566666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777777777777766644 67777777777777777777777777776663
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-12 Score=109.89 Aligned_cols=226 Identities=16% Similarity=0.189 Sum_probs=115.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE----VTYGVMIEAFC 301 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 301 (527)
|..-|...|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+.. ..|-.+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 4444555555555555555555432 112334445555555555555555555555554333221 22333444444
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 043284 302 KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKK 381 (527)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 381 (527)
...+.+.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.++..-+.+...+..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455566666666666554332 2333334555566666666666666666666554445555566666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 043284 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK---IGNAKEGIRILEEML 456 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 456 (527)
.+..+.... +....-..+........-.+.|..++.+-... .|+...+..++..... .|...+....++.|+
T Consensus 271 fL~~~~~~~-~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 271 FLRRAMETN-TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHcc-CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 666653211 22223333333333344445555555444433 5666666666665432 333455555566665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=128.08 Aligned_cols=202 Identities=13% Similarity=0.032 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043284 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIH 368 (527)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (527)
...+|-++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..++. +...|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 3445555555555555555555555554443211 3344444444444455555555555555443211 2233334445
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (527)
.|.+.++++.|+-.|+++....|.+.+....++..+.+.|+.++|+++++++.... +.|+..-...+..+...+++++|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHH
Confidence 55555555555555555555455555555555555555555555555555555432 11233333334444445555555
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 449 IRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
+..++++.+ +.|+. ..+..++..|.+.|+.+.|..-|.-|...+|
T Consensus 577 l~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 577 LQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 555555555 23332 3345555555555555555555555555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-11 Score=102.54 Aligned_cols=436 Identities=10% Similarity=0.038 Sum_probs=246.1
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (527)
+.-+....++..|+.+++.....+.. ....+-.-+..++...|++++|...++.+.+. ..++...+..+..++.-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHH
Confidence 44556788999999999987533222 22223334556677899999999999998874 334677888888888889
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043284 128 GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV 207 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 207 (527)
|.+.+|..+-.+.. .++-....++....+.|+-++-..+-+.+... ..---+|.....-.-.+.+|+++
T Consensus 105 g~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999998877653 33334445556666777777766666555432 23333455555555668889999
Q ss_pred HHhcccCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 208 LDEMPSMGMVPNLVTHTT-ILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
+......+ |+-...|. +.-+|.+..-++-+.+++.-.++. ++.++...|..+....+.=.-..|.+-...+.+.+-
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 98887653 44444443 334666777788888888777765 233344444433333332111222222222222110
Q ss_pred --------------------------CC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 287 --------------------------EP-----NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 287 --------------------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
-| =...-..++-.|.+.++..+|..+.+++.. . ++.-|..-.-..
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVF 326 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHH
Confidence 00 011222344456677777777776665422 1 222222222222
Q ss_pred HhcCC-------HhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 336 CEEGK-------VEDACELWKRLLRKNCMPDN-AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES 407 (527)
Q Consensus 336 ~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (527)
+..|+ ..-|.+.|+-.-..+..-|. .--..+...+.-..++++.+..+..++.-...|-..--.++++++..
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh
Confidence 23222 33344444444333322222 12233444444555677777777776443333322233467777778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTY-NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTS-FSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 485 (527)
|++.+|.++|-++....++ |..+| ..|.++|.+.+.++.|..++-++-. +.+..+ +..+++.|.+.|.+=-|.+
T Consensus 407 gny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred cChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888776644333 34444 4455677777777777666544322 122222 3345566777787777777
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHh
Q 043284 486 VVSMATASGSVESDSWNFLLTRIVS 510 (527)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~ll~~~~~ 510 (527)
.|+.+...+ |+++.|..--++|.|
T Consensus 483 AFd~lE~lD-P~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 483 AFDELEILD-PTPENWEGKRGACAG 506 (557)
T ss_pred hhhHHHccC-CCccccCCccchHHH
Confidence 777764444 566677655554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-10 Score=108.30 Aligned_cols=433 Identities=16% Similarity=0.080 Sum_probs=292.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
++..+. +...+++...++..+.+++..|. -.++....+-.+...|+-++|..........+.- +...|..+.-.
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLL 84 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHH
Confidence 334443 44678999999999999886554 3345565666677889999999999988875332 66678888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+....++++|++.|+.....+ +.|...+.-+.-.-++.|+++........+.+. .+..-..|..++.++.-.|+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999987 677788887777778888888777766666553 23345678888889999999999
Q ss_pred HHHHHHhcccCC-CCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 204 AIRVLDEMPSMG-MVPNLVTHTTILG------GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 204 A~~~~~~~~~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
|..+++...+.. -.|+...+..... .....|..+.|++.+..-... +......-..-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999887764 2456655543322 345678888888877665443 11122233445677889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFC-KGKKSGEAR-NLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRK 354 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (527)
++..+... .||...|...+..+. +-.+.-++. .+|....+.-.. .......-+......+-.+..-+++....+.
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 99999987 567766665554443 343444444 556555443111 1111111122222223344555667777777
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH---hcC------------CCCCHHHHH--HHHHHHHhcCCHHHHHHHH
Q 043284 355 NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF---ERG------------SIPSLLTYN--TLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~------------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~ 417 (527)
|+++ ++..+...|-.-...+-.+++...+ ..+ .+|....|. .++..+-..|+++.|..++
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7553 3333443332222111111111111 111 256666554 5677888999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 418 DDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 418 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
+..+++ .|+ ...|..=.+.+...|++++|..++++..+.+ .+|...-..-+.-..++++.++|.++.....+.+.
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 999976 666 3456566678899999999999999999864 24544444677778899999999999999888774
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=125.85 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043284 164 RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG--MVPNLVTHTTILGGYVWRGDIENAKR 241 (527)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 241 (527)
+..+|...|..+... +.........+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567888888886554 33334555667888888999999999998887652 11256677777655422 22222
Q ss_pred HH-HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 242 VF-GDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
.+ +.+++.. +..+.+|.++.++|.-+++.+.|++.|++.... .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 3333332 446789999999999999999999999998876 34 6788888888888889999999999988765
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
+.. +-..|.-+...|.++++++.|+-.|+++...++. +......+...+.+.|+.++|+.+++++....+.|+..--.
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 433 3345556778889999999999999999887644 66777778888889999999999999997777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
.+..+...+++++|+..++++.+. .|+ ...|..+...|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778888889999999999999876 454 5567777888999999999999998888754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-10 Score=103.12 Aligned_cols=432 Identities=10% Similarity=0.102 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..|...++.+.++|+....+..|.+++..-|+.....+|...+......|-++-++.++++.++. ++..-...+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 48888899999999999999999999987777777789999999888999999999999999964 44457778899
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC-----CCCChhhHHHHHHHHHcCCCh---HHHHHHHHhcccCCCCCCH--HHHHHHHH
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFK-----VVPNVFTCNILIKALCKKDDV---EGAIRVLDEMPSMGMVPNL--VTHTTILG 228 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 228 (527)
++..+++++|.+.+..+..+.. .+.+-..|.-+.+..++.-+. -....+++.+... -+|. ..|.+|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 9999999999999988764311 133455677776666655432 2344455555543 2453 47899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----------------C------ChhHHHHHHHHHHHCCC
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL----------------G------RLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~~~~~~~ 286 (527)
.|.+.|.+++|..+|++.+..- .+..-|..+.+.|+.. | +++-.+.-|+.+...+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999988762 2333444444444321 1 12223333444333210
Q ss_pred -----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CHHhHHHHHHHHHhcCCHhHHHHHHH
Q 043284 287 -----------EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP------SSALCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 287 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
+-++..|..-... ..|+..+....+.+..+. +.| -...|..+...|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1123333333332 256677777777777653 222 13457778889999999999999999
Q ss_pred HHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CC------CCHHHHHHHHHHHHhcC
Q 043284 350 RLLRKNCMPD---NAISSTIIHWLCKEGKIWEAKKLFDEFERG------------SI------PSLLTYNTLIAGMCESA 408 (527)
Q Consensus 350 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~------~~~~~~~~l~~~~~~~~ 408 (527)
+..+...+-- ..+|..-...-.+..+++.|.++.+..... .+ .+...|..++..--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887654322 334555556666778899999988876221 11 13344666666666778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChhHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYE---SGNEGEVG 484 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~ 484 (527)
-++....+++++.+..+. ++.........+-...-++++.++|++-+..-..|+. ..|+..+.-+.+ .-+.+.|+
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 889999999999987654 2222222233334555678888888877765334554 345555444433 24689999
Q ss_pred HHHHHHHhCCCCChhhHHHHHH-H---HHhchhhhHHHHHHH
Q 043284 485 KVVSMATASGSVESDSWNFLLT-R---IVSDLDSGAGALDEL 522 (527)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ll~-~---~~~~~~~a~~~~~~~ 522 (527)
.+|+++.+..||...-.-.|+. . .+|-...|..+++++
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999866644433333332 2 236666777777664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-10 Score=105.39 Aligned_cols=437 Identities=11% Similarity=0.015 Sum_probs=295.1
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
+..+.+....+-.+...|+-++|.......++.++ .+..-|..++-.+....++++|+++|..++...+. +..++
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~---~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qil 112 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL---KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD--NLQIL 112 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCc---ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHH
Confidence 34556676777778889999999999999987665 46778999988888899999999999999997555 78888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH------
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL------ 191 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------ 191 (527)
..+.-.-++.|+++.......++.+.. +.....|..++.++.-.|+...|..+++...+.....|+...+...
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 888888899999999999999988864 4556678888899999999999999999988764434565554332
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcC
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSMGMVPNLV-THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTV-LMDGYIKLG 269 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g 269 (527)
.....+.|..+.|++.+..-... + .|.. .-..-...+.+.++.++|..++..++.. .||..-|.. +..++.+..
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHh
Confidence 23455778888888888765442 1 1222 2334456778899999999999999988 455555544 445554444
Q ss_pred ChhHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 043284 270 RLTDAV-KVMDEMEDNGVEPNEVTYGVM-IEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 270 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (527)
+.-+++ .+|....+. .|....-..+ +......+-.+..-+++....+.|+++ ++..+...|-.....+-..++
T Consensus 268 d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~L 342 (700)
T KOG1156|consen 268 DMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKL 342 (700)
T ss_pred hhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHH
Confidence 444444 666666544 2222221111 112222233344556677777777654 233333333322222211122
Q ss_pred HHHHHh----CC----------CCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 348 WKRLLR----KN----------CMPDN--AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 348 ~~~~~~----~~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
...+.. .| -+|.+ +++..++..+-..|+++.|...++......|.-+..|..=++.+...|+++
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChH
Confidence 111111 11 13343 344556778889999999999999997766666677877788999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCH----HHHHH--HHHHHHhcCChhHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF--PNK----TSFSL--LIEGLYESGNEGEV 483 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~----~~~~~--l~~~~~~~g~~~~A 483 (527)
+|..++++..+.. .+|...=.-.+....+.+..++|.++.....+.|.. -+. -.|-. =+.+|.+.|++-.|
T Consensus 423 eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 423 EAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 9999999998763 244443335666778889999999999988877641 011 11222 24667788888777
Q ss_pred HHHHHHH
Q 043284 484 GKVVSMA 490 (527)
Q Consensus 484 ~~~~~~~ 490 (527)
++-|..+
T Consensus 502 LKkfh~i 508 (700)
T KOG1156|consen 502 LKKFHEI 508 (700)
T ss_pred HHHHhhH
Confidence 7655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-11 Score=114.08 Aligned_cols=444 Identities=14% Similarity=0.048 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhccc--CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKF--HPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
.....+...+.-..+.+++.-..-.+++. ...+.-++..|..+.-++...|+++.+.+.|++.... .--....|..
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~ 362 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQ 362 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHH
Confidence 33344444555556666665443222211 1122336667777777777888888888888877653 2224567777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhcCCC---CCChhhHHHHHHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQR-SVRSLNTLLNALVQ-NKRYDLVHLMFKNSRHKFKV---VPNVFTCNILIKA 194 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~ 194 (527)
+...+...|.-..|+.+++........| +...+...-..|.+ .+..++++..-.+.....+. .-....|..+.-+
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~ 442 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA 442 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 7777777888888888887765543223 33333333344433 35555555555444431111 1123344444444
Q ss_pred HHcC-----------CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 195 LCKK-----------DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 195 ~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
|... ....++++.+++..+.+.. |....-.+.--|+..++.+.|.+..++.++.+...+...|..+.-
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4321 2345677777777665422 333322333345667778888888888887765667778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------------------------
Q 043284 264 GYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR------------------------ 319 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 319 (527)
++...+++.+|+.+.+.....- ..|-.....-+..-...++.++++.....++..
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 8888888888888877665431 011111111122223345555555544433320
Q ss_pred ----CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--CCC------HhhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043284 320 ----KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC--MPD------NAISSTIIHWLCKEGKIWEAKKLFDEFE 387 (527)
Q Consensus 320 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (527)
...-...++..+.......+........ +.+... .|+ ...|......+.+.++.++|...+.+..
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0000111222221111111000000000 111101 111 1233445566777788888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCCCCH
Q 043284 388 RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIR--ILEEMLDKGCFPNK 464 (527)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~ 464 (527)
...+-....|......+...|+.++|.+.|...... .|+ +.....+...+.+.|+..-|.. ++..+++.+ +.+.
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~ 754 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNH 754 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCH
Confidence 766667777777777788888888888888777754 554 4566777778888887776666 888888754 2356
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 465 TSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
..|..++..+.+.|+.++|.+.|..+.....
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7788888888888888888888888776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-11 Score=103.57 Aligned_cols=288 Identities=12% Similarity=0.068 Sum_probs=228.5
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
-.|+|.+|++...+..+.+-. ....|..-..+.-+.|+.+.+-.++.++.+.-..++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999998887643 3456666777888899999999999999887445667777788889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHhcCCHhHHHHHHH
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA-------LCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
-++++.+.+. .+.........+|.+.|++.....++..+.+.+.-.+.. ++..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999998763 367888999999999999999999999999988766553 45555555556666666667777
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043284 350 RLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV 429 (527)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 429 (527)
...+. .+.++..-..++.-+.++|+.++|.++..+..+... |.. -...-.+.+-++.+.-++..++-... .+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-Chh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 76554 345677777888999999999999999988843222 222 22233456678888888888776654 23355
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (527)
..+..|...|.+.+.|.+|.+.|+..++. .|+..++..++.++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77889999999999999999999988884 599999999999999999999999999987643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-11 Score=102.71 Aligned_cols=435 Identities=10% Similarity=0.070 Sum_probs=264.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
++..+++.|++++|...++.+... ..++.+.+..+.-+..-.|.+.+|..+-.++.+. +--...+...-.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~------pL~~RLlfhlahk 133 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT------PLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHH
Confidence 566778999999999999998542 2367778888887888889999999998877652 2222334444456
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH-HHHHHHcCCChHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI-LIKALCKKDDVEGAI 205 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~ 205 (527)
.|+-++-....+.+.+. .+--.++.......-.+++|+++++++... .|+-...|. +.-+|.+..-++-+.
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHH
Confidence 67766666665555432 233345555555566789999999998764 455555554 344667888888888
Q ss_pred HHHHhcccCCCCCC-HHHHHHHHHHHHh--cCCh---------------------------------HHHHHHHHHHHHC
Q 043284 206 RVLDEMPSMGMVPN-LVTHTTILGGYVW--RGDI---------------------------------ENAKRVFGDILDR 249 (527)
Q Consensus 206 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~--~~~~---------------------------------~~a~~~~~~~~~~ 249 (527)
++++..... -|| +...|.......+ .|+. +.|++++--+.+.
T Consensus 206 evl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 206 EVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 888776654 233 3333333222222 1211 2222222222221
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCC
Q 043284 250 GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK-------KSGEARNLLDDMLQRKYV 322 (527)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~ 322 (527)
-+..-..|+-.|.+.+++.+|..+.+++.- .+..-|..-.-.....| ...-|.+.|+-.-+++..
T Consensus 284 ----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 284 ----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred ----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 112233455567889999999998877652 23333322222233333 234555656555444433
Q ss_pred CCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHH-HH
Q 043284 323 PSS-ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYN-TL 400 (527)
Q Consensus 323 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l 400 (527)
-|. .--..+..++.-..++++.+.+++.+...-...|.. ...+.++++..|++.+|+++|-.+......|..+|. .+
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSML 434 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHH
Confidence 222 223345666677788999999999888764443444 445889999999999999999998654445666665 56
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPNVFTY-NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN 479 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (527)
+++|.+.++++.|..++-++. -+.+..+. ..+..-|.+.+.+--|-+.|..+... .|++..|. |+
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GK 500 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GK 500 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------Cc
Confidence 788999999999988776553 22333333 34446788899998899999888764 57777664 33
Q ss_pred hhHHHHHHHHHHhCCC--CChhhHHHHHHHHH----hchhhhHHHHHHHH
Q 043284 480 EGEVGKVVSMATASGS--VESDSWNFLLTRIV----SDLDSGAGALDELL 523 (527)
Q Consensus 480 ~~~A~~~~~~~~~~~~--~~~~~~~~ll~~~~----~~~~~a~~~~~~~l 523 (527)
--...-+|..+..... ........++..+. .+.|--.++..+..
T Consensus 501 RGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 501 RGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred cchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344445555433322 22334444444332 34444444444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-10 Score=102.52 Aligned_cols=451 Identities=13% Similarity=0.063 Sum_probs=267.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.-+..+..+|++++|.+...+++...| .+..++..-+.++.+.++|++|+.+.+.-... ..+...+..-+-+..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p---dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP---DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC---CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHH
Confidence 345556678999999999999976544 57778888888999999999999777655431 111122122233445
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH-cCCChHHH
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC-KKDDVEGA 204 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 204 (527)
+.++.++|+..++-+. +.+..+...-...+.+.|++++|..+|+.+.+. +...+...+.+-+ ..+.--.+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-----~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-----NSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHhhhH
Confidence 7899999999998332 344557777788899999999999999999765 2222322222111 11111111
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHHCCC-------C------CCH-HhHHHHHHHHHh
Q 043284 205 IRVLDEMPSMGMVPNLVTHTTILG---GYVWRGDIENAKRVFGDILDRGW-------V------PDA-TTYTVLMDGYIK 267 (527)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~------~~~-~~~~~l~~~~~~ 267 (527)
. +.+.... .| ..+|..+.+ .+...|++.+|+++++...+.+. . -.. .+-..+...+-.
T Consensus 162 ~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 2332222 23 334544443 45678999999999998833210 0 001 122345566778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHH-HHHHHHHHHHHcCCCC---------CHHhHHHHHH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTY----GVMIEAFCKGKKSG-EARNLLDDMLQRKYVP---------SSALCCKVID 333 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~---------~~~~~~~l~~ 333 (527)
.|+.++|..+|....+... +|.... |.++..-....-++ .++..++......... ....+....-
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988753 344222 22222211111111 1222222221110000 0011111111
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCH
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC--KEGKIWEAKKLFDEFERGSIPS-LLTYNTLIAGMCESAEL 410 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 410 (527)
...-.+..+.+.++..... +..|.. .+..++.... +......+..++.....+.+.+ ..+.-.+++.....|++
T Consensus 316 L~l~tnk~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 1112233344444433322 122332 3333333322 2234777888888886666655 56667778888999999
Q ss_pred HHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHh
Q 043284 411 TEAGRLWD--------DMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK---GC--FP-NKTSFSLLIEGLYE 476 (527)
Q Consensus 411 ~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~ 476 (527)
+.|++++. .+.+.+..| .+...++..+.+.++.+.|..++.+++.. .. .+ -..++..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 555444444 34455666677777777777777766631 00 11 12334455555567
Q ss_pred cCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH-hchhhhHHHHHHH
Q 043284 477 SGNEGEVGKVVSMATASGSVESDSWNFLLTRIV-SDLDSGAGALDEL 522 (527)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~a~~~~~~~ 522 (527)
.|+.++|...++++.+..++|..+...+...+. -|.++|+.+..++
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 799999999999999999999999988888654 7888888887765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-09 Score=103.61 Aligned_cols=293 Identities=13% Similarity=0.123 Sum_probs=148.2
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (527)
..++...|++++|++.++.. ...+..........+..+.+.|++++|..+|..+.++.|. +..-|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~---~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKN---EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhh---hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhh
Confidence 44556667777777776654 2222233445555666666667777777777766665332 333444444444222
Q ss_pred -----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 128 -----GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD-LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 128 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
.+.+...++++++...- |...+...+.-.+..-..+. .+...+..+..+ |++ .+|+.+-..|....+.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcChhHH
Confidence 23455566666665542 33222222222222212232 222333333333 322 2444454455444444
Q ss_pred HHHHHHHHhcccC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043284 202 EGAIRVLDEMPSM----G----------MVPNLV--THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGY 265 (527)
Q Consensus 202 ~~A~~~~~~~~~~----~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (527)
.-..+++...... + -.|+.. ++..+...|...|++++|++++++.++.. +..+..|..-.+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 4444444433211 1 112222 33444555666666666666666666653 22355666666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh--------HHHHHHHHHh
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL--------CCKVIDLLCE 337 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 337 (527)
-+.|++++|.+.++.....+.. |...-+.....+.+.|+.++|.+++......+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655422 555555566666666666666666666655443222111 1223455666
Q ss_pred cCCHhHHHHHHHHHHh
Q 043284 338 EGKVEDACELWKRLLR 353 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~ 353 (527)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6666666666665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-09 Score=93.00 Aligned_cols=300 Identities=13% Similarity=0.020 Sum_probs=219.2
Q ss_pred CCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 198 KDDVEGAIRVLDEMPSMG-MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
.++...|...+-.+.... ++-|+.....+..++...|+.++|...|++..-.++ -+..........+...|+.++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHH
Confidence 444444444443333322 344677888899999999999999999998876531 122333333445567888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC 356 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (527)
+...+.... .-....|-.-+.......++..|+.+-++..+.+.. +...+..-..++...++.++|.-.|+.+....
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 888776542 124455555556666788899999988888876543 45556556677888899999999999888764
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 043284 357 MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLI-AGMCE-SAELTEAGRLWDDMVEKGVEPN-VFTYN 433 (527)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 433 (527)
+.+...|..++..|...|.+.+|...-+......+.+..+...+. ..+.. ...-++|.+++++.... .|+ ....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 347788999999999999999998888877555666777766653 33332 23457888888887754 666 34566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
.+...|...|..+.++.++++.+. ..||....+.|++.+...+.+++|.+.|..+.+.+|.+..+...+-
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 777788899999999999999887 4689999999999999999999999999999998887665555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-12 Score=122.67 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=111.2
Q ss_pred CchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 93 AFDAVESLLTELKQNPEIKCGENLFITVIRNYG---------LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK 163 (527)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (527)
++++|..+|+++.+..|. +...|..+..++. ..+++++|...+++..+.+ +.+..++..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 355555555555554333 3334444433332 1233556666666666554 345555555556666666
Q ss_pred CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043284 164 RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVF 243 (527)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (527)
++++|...|++.... .+.+...+..+...+...|++++|+..+++..+.+.. +...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 666666666666554 1223445555566666666666666666666554321 1122222333344556666666666
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 244 GDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN-EVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
+++++...+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|...| +.|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 66655432223444555556666666666666666665443 222 233334444445444 355555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=108.98 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+...|++++|...++++++..| .+...+..++..+...|++++|.+.+++..+..+. +...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP---DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--NGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Confidence 44567788888888999999999988876655 35667788888888888888888888888875433 45567777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
...+...|++++|.+.+++..+... +.....+..+..++...|++++|...+++.... .+.+...+..+...+...|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcC
Confidence 7788888888888888888776421 223345555666677777777777777776654 1223445556666666666
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
++++|...+++..... +.+...+..+...+...|+.+.|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666665541 23444455555555566666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-11 Score=107.96 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|.+.++++.+..|. +...+..+...+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 445666666667777777777777766654332 44556666666667777777777777666654 344555666666
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
.+...|++++|...+++.............+..+...+...|++++|...+++...... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 66666777777766666654311122233444455555556666666666655554321 13344555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555544 12234444444455555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-11 Score=117.71 Aligned_cols=245 Identities=12% Similarity=-0.002 Sum_probs=138.0
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 270 RLTDAVKVMDEMEDNGVEP-NEVTYGVMIEAFC---------KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
++++|...|++..+.. | +...|..+..++. ..+++++|...+++..+.++. +...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 3556667777666552 3 2334444443332 223456677777776665433 4555556666666677
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDD 419 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 419 (527)
++++|...++++.+.++ .+...+..+...+...|++++|...+++.....|.+...+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777777766652 24555666666677777777777777776554444444433444445556677777777776
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--
Q 043284 420 MVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT-SFSLLIEGLYESGNEGEVGKVVSMATASGS-- 495 (527)
Q Consensus 420 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 495 (527)
+.+.. .| +...+..+..++...|+.++|...++++... .|+.. ....+...|...| ++|...++.+.+...
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 65542 23 3344555666666677777777777665542 23332 2344444555555 355555555444322
Q ss_pred CChhhHHHHHHHHHhchhhhHHHHHHHHh
Q 043284 496 VESDSWNFLLTRIVSDLDSGAGALDELLV 524 (527)
Q Consensus 496 ~~~~~~~~ll~~~~~~~~~a~~~~~~~l~ 524 (527)
+....+..++..++|+.+.+... +++.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 33334555556666666665555 44433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-09 Score=91.58 Aligned_cols=402 Identities=11% Similarity=-0.010 Sum_probs=263.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.--+..+..|...++-+.|+.......... ..+..-..+...+-+.++-.++.--+.......|. .-.....++
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~----r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~--aL~~i~~ll 171 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTL----RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM--ALQVIEALL 171 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccc----cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch--HHHHHHHHH
Confidence 445778888889999999999988774322 22222222222333333333333333333332332 111222222
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ--NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
..-. .| +...-..|-....++.......-+.+++. .++...+...+-.+....-++.|+.....+...+...|
T Consensus 172 ~l~v-~g----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 172 ELGV-NG----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHhh-cc----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2111 11 11111222222233433333333333333 34444444444333333236678888999999999999
Q ss_pred ChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNL-VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVM 278 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 278 (527)
+.++|+..|++....+ |+. .......-.+.+.|+++....+...+.... +.....|..-+......++++.|+.+-
T Consensus 247 dn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred CchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999887653 332 222223334567888888888888777652 224445555556666788999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 043284 279 DEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP 358 (527)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (527)
++.++.. +.+...+..-...+...+++++|.-.|+...... +.+...|.-++.+|...|.+.+|.-.-+...+. .+.
T Consensus 324 eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 9988764 3356666666778889999999999999887642 236788999999999999999999888777664 233
Q ss_pred CHhhHHHHH-HHHH-HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043284 359 DNAISSTII-HWLC-KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLI 436 (527)
Q Consensus 359 ~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 436 (527)
+..+...+. ..+. ....-++|.+++++.....|.-....+.+...+...|..+.++.++++.... .||....+.|.
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lg 478 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLG 478 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHH
Confidence 444444332 2221 2223578999999987777777888889999999999999999999998865 78999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 043284 437 QGFCKIGNAKEGIRILEEMLDKGCFPNK 464 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 464 (527)
+.+...+.+++|.+.|..++.. .|+.
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 9999999999999999999984 4654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=104.82 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=193.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 258 YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
-+.+.++|.+.|.+.+|.+.++...+. .|-+.||..+-+.|.+..++..|+.++.+-++. ++.++....-..+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999988876 677888999999999999999999999988875 33455555667788888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (527)
.++.+.|.++|+...+.. +.++.....+...|.-.++++-|.+.++++......++..|+.+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 899999999999998875 4466777777778888899999999999997766678899999999999999999999999
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 418 DDMVEKGVEPN--VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 418 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
++.....-.|+ ...|..+.......||+..|.+.|+-++..+ .-+...++.|.-.-.+.|+.++|..+++.+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 98887644454 4567778888888999999999999998764 22557788888888899999999999998866554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-11 Score=104.66 Aligned_cols=227 Identities=15% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTY-GVMIEAFCK 302 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 302 (527)
+.+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+.+.|+.++.+-.+. .|..+|| .-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 44455555555555555555554444 334444555555555555555555555544443 2222222 223344444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
.++.++|.++++...+... .++.....+...|.-.++++.|+.+|.++.+.|.. ++..|+.+..+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 5555555555555544321 13333333344444455555555555555555533 444555555555555555555555
Q ss_pred HHHHhcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 383 FDEFERGSI-P--SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 383 ~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|++...... | -...|-.+.......|++..|.+-|+-....+ ......++.|.-.-.+.|+.++|..+++.+.+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555421111 1 22344445554455555555555555444331 11234455554444555555555555555444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-09 Score=98.22 Aligned_cols=406 Identities=14% Similarity=0.034 Sum_probs=265.6
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 043284 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL 191 (527)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 191 (527)
.+..+|..+.-+....|+++.+-+.|++....- -...+.|..+...+...|.-..|..+++........+++...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 467788888888888999999999999887643 3556778888888999999889999888876552223344444444
Q ss_pred HHHHHc-CCChHHHHHHHHhcccC--CC--CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCH
Q 043284 192 IKALCK-KDDVEGAIRVLDEMPSM--GM--VPNLVTHTTILGGYVWR-----------GDIENAKRVFGDILDRGWVPDA 255 (527)
Q Consensus 192 ~~~~~~-~~~~~~A~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 255 (527)
-..|.+ .+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 444543 46677777766665552 11 12234455454444421 1245677888888777533 44
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
...-.+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....-.. |......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhh
Confidence 4444455567788899999999999988765668899999999999999999999998887663111 111111112222
Q ss_pred HhcCCHhHHHHHHHHHHhC----------------------------CCCCCHhhHHHHHHHHHHcC---CHHHHHHHHH
Q 043284 336 CEEGKVEDACELWKRLLRK----------------------------NCMPDNAISSTIIHWLCKEG---KIWEAKKLFD 384 (527)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~ 384 (527)
...++.+++......+... .....+.++..+.......+ ..+.. +.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cC
Confidence 2345555554443332211 00001111111111111000 01111 11
Q ss_pred HHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 385 EFERGSIPS------LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 385 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
.......|+ ...|......+.+.++.++|...+.+.... .+.....|......+...|.+.+|.+.|..++..
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 110011122 234556677788889999999888887754 2345666777777888899999999999999884
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHHHHhhc
Q 043284 459 GCFPN-KTSFSLLIEGLYESGNEGEVGK--VVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDELLVKN 526 (527)
Q Consensus 459 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~l~~~ 526 (527)
.|+ ..+...++.++.+.|+..-|.. ++..+.+.++.+...|..+.... .|+.++|..-+..+++++
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 465 4678999999999998888877 99999999999999999998844 499999999999988875
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-09 Score=95.27 Aligned_cols=401 Identities=15% Similarity=0.089 Sum_probs=243.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..-+...+..|+++.|+..|..++..+| +|...|..-..++...|+|++|.+=-.+..+..|. ....|.....++
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~--w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD--WAKGYSRKGAAL 80 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc--hhhHHHHhHHHH
Confidence 3456677889999999999999998888 48889999999999999999999888887776554 556888999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCC--CCCChhhHHHHHHHHHc--
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL---VHLMFKNSRHKFK--VVPNVFTCNILIKALCK-- 197 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-- 197 (527)
.-.|++++|+..|.+-++.. +.+...+..+..++........ --.++..+..... .......|..++..+-+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999999875 4556667777776621100000 0011111110000 00001112222222111
Q ss_pred --------CCChHHHHHHHHhc-----ccC-------CCCC---------C-------------HHHHHHHHHHHHhcCC
Q 043284 198 --------KDDVEGAIRVLDEM-----PSM-------GMVP---------N-------------LVTHTTILGGYVWRGD 235 (527)
Q Consensus 198 --------~~~~~~A~~~~~~~-----~~~-------~~~p---------~-------------~~~~~~l~~~~~~~~~ 235 (527)
-..+..+.-.+... ... +..| . ..-...+.+...+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 01111111111110 000 0011 0 0123445666667777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCCHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVM-------IEAFCKGKKSGE 308 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~ 308 (527)
++.+++-+...++.. .+..-++....+|...|.+..+...-....+.|-. ....|+.+ ..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 778888777777664 35556666777777777777777766666555422 22223332 234555667777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 309 ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
++..|.+.+.....|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|...|.++..
T Consensus 317 ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 77777776554333222 223333444444444433332221 11112225566778888889888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043284 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSF 467 (527)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 467 (527)
..|.|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++....++++|.+.|.+.++.+ |+..-+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~ 462 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEA 462 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 77888888888888888888888888888877766 444 3344444555566678888888888888754 555444
Q ss_pred H
Q 043284 468 S 468 (527)
Q Consensus 468 ~ 468 (527)
.
T Consensus 463 ~ 463 (539)
T KOG0548|consen 463 I 463 (539)
T ss_pred H
Confidence 3
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-08 Score=93.34 Aligned_cols=422 Identities=11% Similarity=0.067 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
......-+..+...|++++|.+...++....| .+...+..-+.++++.++|++|+.+.+.-... ..+...+..-+-
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHH
Confidence 34555556677788999999999999988643 36667777888889999999999666544321 111111123344
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCC
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGD 235 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~ 235 (527)
+..+.+..|+|+..++.... .+..+...-...+.+.|++++|+++|+.+.+.+.. +.. .-..++.+-.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a---- 157 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA---- 157 (652)
T ss_pred HHHHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----
Confidence 55678999999998884322 24446666677888999999999999999876532 221 1111211111
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHH---HHHHHHhcCChhHHHHHHHHHHHCC-------CCCCH-------HHHHHHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTV---LMDGYIKLGRLTDAVKVMDEMEDNG-------VEPNE-------VTYGVMIE 298 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~ 298 (527)
.-.+. .+......| ..+|.. ..-.+...|++.+|+++++...+.+ -.-+. ..-..+..
T Consensus 158 ~l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 158 ALQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred hhhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 01111 122221122 223333 3445678899999999999883211 01011 12233555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCH-h-HHHHHHHHHHhCC-----------CCCCHh
Q 043284 299 AFCKGKKSGEARNLLDDMLQRKYVPSSALC----CKVIDLLCEEGKV-E-DACELWKRLLRKN-----------CMPDNA 361 (527)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~a~~~~~~~~~~~-----------~~~~~~ 361 (527)
.+-..|+..+|.+++..++..+.. |.... +.++ +.....++ + .++..++...... -.-...
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677899999999999999887543 33221 2222 22222221 1 1222222211110 000111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC--ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF 439 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 439 (527)
.-+.++..| .+..+.+.++-..... ..|.. .+..++.... +...+.++..++....+....-...+...++...
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~-~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPG-MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCc-cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 112233333 2334444444444322 22222 3333443332 2235778888888887652222244555666778
Q ss_pred HccCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CChhhHHHHHH--
Q 043284 440 CKIGNAKEGIRILE--------EMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGS---VESDSWNFLLT-- 506 (527)
Q Consensus 440 ~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ll~-- 506 (527)
...|+++.|++++. ...+.+. .+.+...+...+.+.++.+.|..++..+...-. +.......++.
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 89999999999999 5555443 344555666778888887777777777654322 22233333333
Q ss_pred ----HHHhchhhhHHHHHHHHhhc
Q 043284 507 ----RIVSDLDSGAGALDELLVKN 526 (527)
Q Consensus 507 ----~~~~~~~~a~~~~~~~l~~~ 526 (527)
..+|+.+.|...++++++.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC
Confidence 23499999999999998854
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-09 Score=102.89 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=159.3
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
-|+..+|.+++..|+..|+.+.|- +|..|... ..+.+...+..++......++.+.+. .|...+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDty 86 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPK------------EPLADTY 86 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCC------------CCchhHH
Confidence 466799999999999999999998 88888432 33455567778877777777776544 4467789
Q ss_pred HHHHHHHHhcCChhH---HHHHHHHHH----hcCCCCC-HH-------------HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 118 ITVIRNYGLAGRPEL---AVKTFLRIE----KFNVQRS-VR-------------SLNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~---A~~~~~~~~----~~~~~~~-~~-------------~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
..+..+|...|+... +.+.++.+. ..|+... .. .-...+....-.|-++.+++++..+.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998655 222222211 1121100 00 01122333344455555555555544
Q ss_pred hcCCCCCChhhHHHHHHHHHc-CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043284 177 HKFKVVPNVFTCNILIKALCK-KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA 255 (527)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (527)
......|... +++-+.. ...+++-..+.....+ .|+..+|..++.+-..+|+.+.|..++.+|.+.|++.+.
T Consensus 167 vsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 167 VSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3211111111 2333322 2334444444444444 378899999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKK 305 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (527)
+-|-.|+-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 766666544 78888888888889999999999998888877777554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-09 Score=102.71 Aligned_cols=260 Identities=18% Similarity=0.200 Sum_probs=134.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKA 194 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~ 194 (527)
...-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+..+ .|+... |..+..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHH
Confidence 3334445566778888888887665543 2333455566777777778888888888777766 344333 3444444
Q ss_pred HHc-----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043284 195 LCK-----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI-ENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 195 ~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (527)
..- ..+.+...++++++...- |.......+.-.+.....+ ..+...+..++..|+| .+|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 321 124556666666665543 3333333332222221222 2344455555666644 3455555555544
Q ss_pred CChhHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 043284 269 GRLTDAVKVMDEMEDN----G----------VEPNE--VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVI 332 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (527)
...+-..+++...... + -+|+. .++..+...|...|++++|++++++.+++.+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 4444444444443321 0 01222 22333444555555555555555555554221 244455555
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 333 DLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
..+-+.|++.+|.+.++.+...+.. |..+-+..+..+.++|++++|..++..+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 5555555555555555555555422 4444445555555555555555555555
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-10 Score=100.01 Aligned_cols=220 Identities=12% Similarity=-0.038 Sum_probs=157.8
Q ss_pred CChhHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 55 QNLDLALQIFHYAGKFHPNFSH-NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
++.+.++..+.+++...+-.++ ....|..++..+...|++++|...|+++.+..|. +...|..+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 4678888888888754332122 2567888899999999999999999999987554 678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 134 VKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
++.|++..+.. +.+..++..+..++...|++++|.+.|+..... .|+..........+...++.++|.+.|.+...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999875 456778888999999999999999999998875 44432222222334557789999999976553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR---GW---VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
.. .|+...+ .......|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2232222 2223345555444 344444422 11 1133578888888999999999999999988765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-10 Score=89.44 Aligned_cols=196 Identities=15% Similarity=0.032 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
-.|+-.|.++|++..|.+-++++++.+|. +..+|..+...|.+.|+.+.|.+.|+++.+..|. +..+.+.....+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--ccchhhhhhHHH
Confidence 44555666666777776666666666553 4556666666666666666666666666665333 444556666666
Q ss_pred HhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 125 GLAGRPELAVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+..|++++|...|++....- ......+|..+.-+..+.|+++.|...|++.... .+........+.....+.|++..
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 66666666666666665431 1122345555555556666666666666665543 22233444555555555666666
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
|...++.....+. ++..+.-..++.-...|+.+.+.+.=.++.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666655555443 4555555555555555555555554444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-10 Score=103.87 Aligned_cols=129 Identities=18% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh----cCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFE----RGSI----PSLLTYNTLIAGMCESAELTEAGRLWDDMVEK------GVEP- 427 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p- 427 (527)
++.+...+...+++++|..+++... .... .-..+++.|...|...|++++|.+++++++.. +..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 3445555666677777777666551 1111 12457888999999999999999999887643 1122
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 428 NVFTYNMLIQGFCKIGNAKEGIRILEEMLD----KGCF-PNK-TSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
....++.+...|.+.+++.+|.++|.+... .|.. |+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 245677888888888888888888887763 2321 333 468889999999999999999888865
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-10 Score=89.58 Aligned_cols=209 Identities=12% Similarity=0.028 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
+...+...|...|++..|..-++++++.+|. +..+|..+...|-+.|..+.|.+.|++..+.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4566677899999999999999999997665 66688899999999999999999999999986 67788999999999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENA 239 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 239 (527)
|..|++++|...|++.........-..+|..+.-+..+.|+++.|.+.|++.++... -...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 999999999999999988765555677899999999999999999999999988752 2456777888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043284 240 KRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGV 295 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (527)
...++.....+. ++..+.-..++.-...|+.+.+-++=..+.+. -|...-+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 999999988865 78899888999999999999998887777765 455554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-10 Score=100.27 Aligned_cols=198 Identities=14% Similarity=0.049 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+.+.|++++|+..|+++++.+|+ ++.+|..++..+...|++++|...|+++.+..|. +...+..+.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg 139 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 34677888889999999999999999988874 6889999999999999999999999999987554 567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
.++...|++++|++.|++..+.+ +.+.. .......+...+++++|...|.+.... ..|+...+ .+. ....|+.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~--~~~lg~~ 212 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIV--EFYLGKI 212 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHH--HHHccCC
Confidence 99999999999999999999875 23332 222222344567899999999776543 23333222 233 2334555
Q ss_pred HHHHHHHHhcc---cCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043284 202 EGAIRVLDEMP---SMGMV---PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV 252 (527)
Q Consensus 202 ~~A~~~~~~~~---~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (527)
..+ +.+..+. +..+. .....|..+...+.+.|++++|...|++.++.+++
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 443 2333333 22111 12457889999999999999999999999987533
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=109.69 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CC
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDR----GW---VPDATTYTVLMDGYIKLGRLTDAVKVMDEMED----NGV-EP 288 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~ 288 (527)
.+++.+...|...|++++|.++++.++.. +. .-....++.+...|.+.+.+++|.++|.+... .|. .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 35666666666666666666666655432 11 11123455566666666666666666655332 221 12
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 289 -NEVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 289 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
...+|..|...|.+.|+++.|.++.+.+.
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23566667777777777777777666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-09 Score=100.98 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=104.0
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.|..|+..|..-.+..+|.+.|+.+...++ .+.+++......++...+++.|..+.-...+..+...-...|....-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA---TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 355677777777777778888877766665 36667777777777777777777775555444333223334444555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHcCCCh
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKALCKKDDV 201 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 201 (527)
.|.+.++...|+.-|+...... |.|...|..++.+|.+.|++..|.+.|++...- .|+... --...-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhH
Confidence 6667777777777777777665 566777778888888888888888888776543 343221 11111223456677
Q ss_pred HHHHHHHHhcc
Q 043284 202 EGAIRVLDEMP 212 (527)
Q Consensus 202 ~~A~~~~~~~~ 212 (527)
.+|++.+....
T Consensus 647 keald~l~~ii 657 (1238)
T KOG1127|consen 647 KEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77776666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=109.51 Aligned_cols=274 Identities=14% Similarity=0.074 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 135 KTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|..+ +.+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence 34555566667777777777777777777777666 66666544 44455666666666666666655554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHH
Q 043284 215 GMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED-NGVEPNEVTY 293 (527)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 293 (527)
.|...+|..+..+|...||... ++..++ ....+...+...|.-..-..++..+.- .+.-||..+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 3566677777777777776554 222222 111223344455554444444444321 112233322
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 043284 294 GVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE 373 (527)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (527)
.+......|-++.+++++..+...... . .+..+++-+... ..-..++........-.+++.++..++..-...
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 222233345555555555443221111 0 111112222221 122223332222221146666677777766677
Q ss_pred CCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 374 GKIWEAKKLFDEF-ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 374 ~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
|+.+.|..++..| .++.+.+..-|-.++.+ .++..-+..++.-|.+.|+.|+..|+...+-.+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777777777 44555555444444443 55666666666667777777777776666655555333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-08 Score=94.13 Aligned_cols=199 Identities=11% Similarity=0.005 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|+.+.+.+.+....+..+......+........+...|++++|.+.++++.+..|. +...+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-hHH
Confidence 4455556666677777666666665444432222223333344555667777777777777664332 3223221 112
Q ss_pred HH----hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 124 YG----LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 124 ~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+. ..|..+.+.+.+..... ..+........+...+...|++++|...+++.... .+.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 22 23444444444443111 11222333444555666777777777777777654 2334555666667777777
Q ss_pred ChHHHHHHHHhcccCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGM-VPNL--VTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777776655421 1222 2344566666777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-08 Score=85.67 Aligned_cols=195 Identities=12% Similarity=0.012 Sum_probs=137.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH-HHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI-TVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~ 122 (527)
+..++..+.+..++++|++++..-....| .+......+..+|....++..|-.+++++....| ...-|. --..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P---~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP---ELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh---HHHHHHHHHHH
Confidence 45666677889999999999887755444 3667788889999999999999999999988644 222222 3345
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL--NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.+-+.+.+..|+.+...|.+. ++...-..-+ ......+++..+..+.++.... .+..+.+...-...+.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheeecccc
Confidence 667889999999999888752 2222211112 2233567888888888877632 244455555555678899
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV 252 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (527)
++.|.+-|+...+-+---....|+..+ +..+.|+++.|++...+++++|++
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999999887753333456777655 445778999999999999888764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-08 Score=87.70 Aligned_cols=402 Identities=13% Similarity=0.057 Sum_probs=242.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
..+....|+++.|+.+|......+|. +...|..-..+|+..|++++|++=-.+..+.+ |.=...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhccc
Confidence 44566789999999999999987554 88889999999999999999999888888765 3447789999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH---HHHHHhcccC---CCCCCHHHHHHHHHHHHhc-----
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA---IRVLDEMPSM---GMVPNLVTHTTILGGYVWR----- 233 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~----- 233 (527)
+++|+..|.+-.+. .+.|...++.+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999998876 445677777787777211100000 0011111110 0000112233333322111
Q ss_pred --CChHHHHHHHHHHHHC--------C-------CCC---------C-------------HHhHHHHHHHHHhcCChhHH
Q 043284 234 --GDIENAKRVFGDILDR--------G-------WVP---------D-------------ATTYTVLMDGYIKLGRLTDA 274 (527)
Q Consensus 234 --~~~~~a~~~~~~~~~~--------~-------~~~---------~-------------~~~~~~l~~~~~~~g~~~~a 274 (527)
.+.....+....+... + ..| . ..-...+.+...+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111122211111110 0 011 0 01124455666666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH-------HHHHHHHHhcCCHhHHHHH
Q 043284 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC-------CKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~ 347 (527)
++.+....+.. -+..-++....+|...|.+......-....+.|.. ...-| ..+..++.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777776653 34444555666677777766666655555444322 11112 2233355556677777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043284 348 WKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEP 427 (527)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 427 (527)
|.+.......|+. ..+....+++....+......+.-..-.-.-...+.+.|++..|+..|.+++... +-
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7776554333221 1222334444444444322111112222233566778889999999999988774 44
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 428 NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
|...|....-+|.+.|.+..|+.-.+..++. .|+. ..|..=+.++....++++|.+.|+++.+.++.+......+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 5777888888889999999988888888875 3544 446666777777788999999999888877655544444333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-09 Score=99.95 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+...+..+.+.|++.+|.-.|+.+++.+| .+.++|..|+......++-..|+..++++.+.+|. +..+...|.
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--NleaLmaLA 360 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLELDPT--NLEALMALA 360 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--cHHHHHHHH
Confidence 3445678888999999999999999999888 48889999999999999999999999999998665 778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL---------NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI 192 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (527)
..|...|.-..|+..++......+ +-. |.... ..+.....+....++|-++....+..+|......|.
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p-~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKP-KYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCc-cch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 999999999999999998876531 110 00000 111122234455566666665545456777777777
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCh
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD-ATTYTVLMDGYIKLGRL 271 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 271 (527)
-.|--.|++++|++.|+..+... +-|...||.|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhH
Confidence 77778888888888888777654 235667888888888888888888888888776 333 44555666677788888
Q ss_pred hHHHHHHHHHH
Q 043284 272 TDAVKVMDEME 282 (527)
Q Consensus 272 ~~a~~~~~~~~ 282 (527)
++|.+.|-..+
T Consensus 515 kEA~~hlL~AL 525 (579)
T KOG1125|consen 515 KEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-08 Score=83.10 Aligned_cols=402 Identities=12% Similarity=0.117 Sum_probs=252.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLN-TLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~ 158 (527)
-+...+..+.+..++..|++++..-.++.|- +......+.-+|-...++..|-+.++++... .|...-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3566666778888999999999988876443 6667778888999999999999999999875 34444433 34577
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHH--HHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK--ALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
+.+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 78899999999999888642 22222111222 2346789999999999988643 555666666667799999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------CH-------------
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-------------NE------------- 290 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~------------- 290 (527)
+.|.+-|+...+-+--.....|+.. -++.+.|+++.|++...++.++|++. |+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 9999999999886544345566644 45667899999999999998876532 11
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043284 291 --VTYGVMIEAFCKGKKSGEARNLLDDMLQR-KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTII 367 (527)
Q Consensus 291 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (527)
..+|.-...+.+.++++.|.+-+..|..+ ....|+.|...+.-. -..+++-....-+.-+...++ ....++..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 11222223456778888888888877542 223455555443322 223556666666666666654 4567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 368 HWLCKEGKIWEAKKLFDEFERG--SIPSLLTYNTLIAGMC-ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
..|++..-++-|..++.+-... .-.+...|+. +.++. -.-..+++.+-++.+... +...-.....-++--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 8999998899888888764211 0123334443 33333 345667776665554322 00000001111111111222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHH
Q 043284 445 ---AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWN 502 (527)
Q Consensus 445 ---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 502 (527)
...+++-+++.++. -..+..+-...|++..++..+.+.|....+-. .+.++|.
T Consensus 396 d~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC-~ehd~Wk 451 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC-NDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhh-cccceee
Confidence 12233334443332 12233444566788899999999998865443 4445554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-07 Score=80.72 Aligned_cols=317 Identities=12% Similarity=0.048 Sum_probs=199.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-SLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 155 (527)
+..-...+...+...|++..|+.-|..+.+.+|. +-.++..-...|...|+...|+.-+.+.++. .||.. +...-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445566677777777777777777777764322 3334444556677777777777777777764 45532 23334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
...+.++|+++.|..-|+.+... .|+..+ ..+|.+-+.... ........+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~---~~s~~~-------------~~eaqskl~~~~------e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH---EPSNGL-------------VLEAQSKLALIQ------EHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc---CCCcch-------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCCc
Confidence 45666777777777777777654 332111 011111110000 01112223344556777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
...|++....+++.. +-|...+..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777763 4466777777778888888877777666665543 23556666666677777777777777777
Q ss_pred HHHcCCCCCHHh----HHH---------HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHHcCCHHHH
Q 043284 316 MLQRKYVPSSAL----CCK---------VIDLLCEEGKVEDACELWKRLLRKNCMPDNA---ISSTIIHWLCKEGKIWEA 379 (527)
Q Consensus 316 ~~~~~~~~~~~~----~~~---------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 379 (527)
.++.+ ||... |.. -+......++|.++++..+...+..+..... .+..+-.++...|++.+|
T Consensus 249 CLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 76643 33221 111 1223345677888888888887765442222 234455666777889999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
++...++....+.|+.++.--..+|.-...++.|+.-|+...+.
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99988888777778899999999999999999999999988876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-08 Score=93.25 Aligned_cols=457 Identities=10% Similarity=-0.017 Sum_probs=274.7
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
..+...|...|-++++.++.+.| .|..++..|+...+...|.+.|+.+.+.++. +..........|++..+++.|
T Consensus 471 rK~~~~al~ali~alrld~~~ap---af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAP---AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHH
Confidence 45588899999999888876555 8999999999888999999999999987554 777888999999999999999
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 134 VKTFLRIEKFNV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 134 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
..+.-..-+... ..-...|....-.|...++...+...|+..... .+.|...|..++.+|...|.+..|+++|.+..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 999544433210 111233444556677888999999999888764 34478899999999999999999999999887
Q ss_pred cCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH--
Q 043284 213 SMGMVPNLVTHTTIL--GGYVWRGDIENAKRVFGDILDR------GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME-- 282 (527)
Q Consensus 213 ~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 282 (527)
... |+. +|.... -.-+..|.+.++...+...+.. +...-..++..+...+.-.|-..++.+++++..
T Consensus 624 ~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 624 LLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 753 332 333222 2345689999999988877643 111123344444444444454444555444432
Q ss_pred -----HCCCCCCHHHHHHHHHHHH---ccC--CHH-HHHHH-HHHHHHcCCCC--------------------CHHhHHH
Q 043284 283 -----DNGVEPNEVTYGVMIEAFC---KGK--KSG-EARNL-LDDMLQRKYVP--------------------SSALCCK 330 (527)
Q Consensus 283 -----~~~~~~~~~~~~~l~~~~~---~~~--~~~-~a~~~-~~~~~~~~~~~--------------------~~~~~~~ 330 (527)
......+...|..+..+|. ... -+. ....+ +.+....+.-+ +..+|..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 2211123333333322221 111 000 00011 11111111111 1222333
Q ss_pred HHHHHHh-------c-CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 331 VIDLLCE-------E-GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 331 l~~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
++..|.+ . .+...|+..+...++.. ..+..+++.|.-. ...|++.-+.-.|-+.....+....+|..+..
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccce
Confidence 3322222 1 12235666666666543 2355566665544 56677777777777776666677888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhc
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEML----DKGCFPNKTSFSLLIEGLYES 477 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~ 477 (527)
.+.+..+++-|...|...+.. .|+ ...|..........|+.-++..+|..-- ..|-.|+..-+..........
T Consensus 859 L~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 888888999999988888754 443 4455544444456677777777776522 223344444443333344455
Q ss_pred CChhHHHHHHH----------HHHhCCCCChhhHHHHHH--HHHhchhhhHHHHHHHHh
Q 043284 478 GNEGEVGKVVS----------MATASGSVESDSWNFLLT--RIVSDLDSGAGALDELLV 524 (527)
Q Consensus 478 g~~~~A~~~~~----------~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~l~ 524 (527)
|+.++-+...+ ......+.+...|..... ...+.++.|...+.+++.
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55554443333 333344444444544444 223666777777666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-11 Score=75.99 Aligned_cols=49 Identities=45% Similarity=1.040 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 440 (527)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-11 Score=76.70 Aligned_cols=49 Identities=33% Similarity=0.610 Sum_probs=26.8
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 043284 183 PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV 231 (527)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (527)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-08 Score=82.54 Aligned_cols=199 Identities=16% Similarity=0.033 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh-hHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN-LFITV 120 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l 120 (527)
.-...++..+...|++..|+.-|..++..+| .+-.++......|...|+-.-|+.-+.++++..| +-. .-..-
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp---~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDP---NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cHHHHHHHh
Confidence 3456789999999999999999999977665 3666777788899999999999999999998633 322 22234
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChh
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRS--VRS------------LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
...+.++|.+++|..-|+.+++.+.... ... ....+..+...|+...|+.++..+.+. .+-+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDAS 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhH
Confidence 5567899999999999999998752111 111 122233444556667777777666654 233566
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
.+..-..+|...|++..|+.-++...+..- -++.++-.+-..+...|+.+.++...++.++.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 666666777777777777666665544321 24445555556666667777777666666665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-07 Score=87.87 Aligned_cols=66 Identities=11% Similarity=-0.121 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE-NLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
...+..+...+...|+.+.+.+.+.+..+..+...+. .........+...|++++|.+.+++..+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555566666555555554432222221 11112233344556666666666665554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-07 Score=97.00 Aligned_cols=376 Identities=11% Similarity=0.035 Sum_probs=234.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+......+...|++.+|...+..+... ..-..............|+++.+..+++.+.......++.........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 4455566677888888888766655331 1111222333445566788888877777653221122233334455566
Q ss_pred HhcCCHHHHHHHHHHhhhcCCC-----CCC--hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH----HHHHHHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKV-----VPN--VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL----VTHTTILG 228 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~ 228 (527)
...|+++++..++......... .+. ......+...+...|++++|...++.....-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 7789999999888876543111 111 112223344566789999999999887653111121 23455666
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDR----GW-VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----GVE--P-NEVTYGVM 296 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 296 (527)
.+...|++++|...+.+.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 777899999999999887653 11 111234556677888899999999998876542 211 1 12334455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC--CCC--CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCHh--h--HHHH
Q 043284 297 IEAFCKGKKSGEARNLLDDMLQRK--YVP--SSALCCKVIDLLCEEGKVEDACELWKRLLRKN--CMPDNA--I--SSTI 366 (527)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l 366 (527)
...+...|++++|...+.+..... ..+ ....+..+.......|+++.|...+..+.... ...... . ....
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 666777899999999988875521 111 23334445667788899999999888875421 111110 0 0112
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSL----LTYNTLIAGMCESAELTEAGRLWDDMVEK----GVEPN-VFTYNMLIQ 437 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~ 437 (527)
+..+...|+.+.|...+........... ..+..+..++...|++++|..++++.... |...+ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2445567899999999877643221111 12456777888899999999999887653 32222 245666777
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 043284 438 GFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~ 458 (527)
++...|+.++|...+.++++.
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999864
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-07 Score=84.18 Aligned_cols=219 Identities=17% Similarity=0.133 Sum_probs=149.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE 308 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (527)
.+...|+++.|...|-+.. +....+.+......+.+|+.+++.+.... .-..-|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 3444555555555443321 22234455667788888998888887663 234456777888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 309 ARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
|.++|.+. ..+...+..|.+.|+|+.|.++-.+.. |+......|..-..-+-+.|++.+|++++-.+..
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 99888653 234556788899999999988877664 3344455565666667788888888887765522
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043284 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFS 468 (527)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 468 (527)
|+. .+..|-+.|..+..+++.++-... .-..|...+..-+-..|+...|.+.|-++.+ |.
T Consensus 853 ---p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~k 912 (1636)
T KOG3616|consen 853 ---PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FK 912 (1636)
T ss_pred ---chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HH
Confidence 332 467788888888888877654321 1234566677778888999999988876654 45
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 043284 469 LLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~ 489 (527)
.-++.|..++.|++|.++-+.
T Consensus 913 aavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhc
Confidence 566778888888888876654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-09 Score=92.83 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=77.1
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--c--CC
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE--S--AE 409 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~--~~ 409 (527)
++...|+++.|++++... .+.......+..|.+.++++.|.+.++.+.+....++ ...++.++.. . +.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHhCchh
Confidence 344455566555554331 2344445555666666666666666666644332222 2222222221 2 24
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNE-GEVGKVVS 488 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 488 (527)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.+.+ +-+..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 66666666666543 34556666666666666666666666666665433 12344555566666666665 44555666
Q ss_pred HHHhCC
Q 043284 489 MATASG 494 (527)
Q Consensus 489 ~~~~~~ 494 (527)
++....
T Consensus 261 qL~~~~ 266 (290)
T PF04733_consen 261 QLKQSN 266 (290)
T ss_dssp HCHHHT
T ss_pred HHHHhC
Confidence 655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.8e-07 Score=85.02 Aligned_cols=317 Identities=12% Similarity=0.074 Sum_probs=187.9
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-------CcChhhHHHHHHHH
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-------KCGENLFITVIRNY 124 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 124 (527)
..-|+.+.|.+-.+.+ .+...|..+...|.+.++++-|.-.+-.|....+. ..+...-..+...-
T Consensus 739 vtiG~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3568888888887777 35669999999999999999887666544332110 00112222344445
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
...|..++|+.+|++.++. ..+-..|...|.+++|.++-+.--. +. --.||......+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHHH
Confidence 6789999999999998874 3455677788999999987754321 11 234566666667778889999
Q ss_pred HHHHHhcccCC-------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043284 205 IRVLDEMPSMG-------------------MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGY 265 (527)
Q Consensus 205 ~~~~~~~~~~~-------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (527)
++.|++..... -..|...|.-.....-..|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 98887653210 011222233333333344555555555544332 33455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----------
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL---------- 335 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------- 335 (527)
+-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+... |...|+.|
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 5667777776665542 2566667788888888888888888876543 22222222
Q ss_pred ---Hhc--CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH---------HHhc--CCCCCHHHHHH
Q 043284 336 ---CEE--GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFD---------EFER--GSIPSLLTYNT 399 (527)
Q Consensus 336 ---~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------~~~~--~~~~~~~~~~~ 399 (527)
... .+.-.|-.+|++. |. -+...+..|.+.|.+.+|+++-- .+.+ ....|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 111 2222333344432 11 12234455777777777766532 2211 12246777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
....++...++++|..++-...
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 7777777778888777765443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-06 Score=91.95 Aligned_cols=339 Identities=13% Similarity=0.038 Sum_probs=215.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC--C----CCCH--HHHHHHHH
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG--M----VPNL--VTHTTILG 228 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~p~~--~~~~~l~~ 228 (527)
..+...|+++.+..+++.+.... ...+..........+...|+++++...+......- . .+.. .....+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 44556788888888777663220 11122233444555667899999999888764321 0 1111 12223344
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDA----TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV---EP--NEVTYGVMIEA 299 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 299 (527)
.+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.....- .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566899999999999998764211121 2345566677889999999999988764311 11 12344556677
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 043284 300 FCKGKKSGEARNLLDDMLQR----KYV--P-SSALCCKVIDLLCEEGKVEDACELWKRLLRK----NCMPDNAISSTIIH 368 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 368 (527)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876552 211 1 1223444566677789999999998887653 11112334445666
Q ss_pred HHHHcCCHHHHHHHHHHHhcC--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERG--SIPSLLTY-----NTLIAGMCESAELTEAGRLWDDMVEKGVEPNV---FTYNMLIQG 438 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~ 438 (527)
.+...|+++.|...++..... .......+ ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 788899999999998887221 11111111 11224445578999999998776542111111 113456677
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 439 FCKIGNAKEGIRILEEMLDK----GCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+...+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 88999999999999998752 32222 245667788899999999999999999887653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-06 Score=83.14 Aligned_cols=389 Identities=16% Similarity=0.117 Sum_probs=218.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
-..++.|.+.|.+..|...-.. +.....|......+..++.+..-+++|-.+|+++.. +...+.+|
T Consensus 619 laaiqlyika~~p~~a~~~a~n----~~~l~~de~il~~ia~alik~elydkagdlfeki~d----------~dkale~f 684 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALN----DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----------FDKALECF 684 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcC----HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----------HHHHHHHH
Confidence 3455666666666655443210 111223555566666666666666666666666543 11233444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLN-TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
-+-.-+-+|+++-+-.- |..+.... .-..-+...|+++.|..-|-+.. .....+.+......|.+
T Consensus 685 kkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~k 750 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKK 750 (1636)
T ss_pred HcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhh
Confidence 33334555555443321 22222211 22344556677777776664432 12234556667788888
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++..+.+|.+.|++++|.++-++...
T Consensus 751 ai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~ 819 (1636)
T KOG3616|consen 751 AISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG 819 (1636)
T ss_pred hHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC
Confidence 998888887653 23445777888888899999998888543 2455677888899999999888776653
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhH
Q 043284 284 NGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS 363 (527)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (527)
.......|..-..-+-..|++.+|.+++-.+.. |+. .+..|-+.|..+..+++.++-.... -..+.
T Consensus 820 --~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~ 885 (1636)
T KOG3616|consen 820 --PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTH 885 (1636)
T ss_pred --chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHH
Confidence 244556666666667778888888777654422 332 3667777777777777766543221 22344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHcCCCCCH--
Q 043284 364 STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDM------------VEKGVEPNV-- 429 (527)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------~~~~~~p~~-- 429 (527)
..+..-|...|+...|+..|-+... |..-+..|-..+-+++|.++-+.- -...+--+.
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 4556666667777777766655421 233333444444444444333211 000000010
Q ss_pred H------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 430 F------TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 430 ~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
. ....-++..+..+-++-|.++-+-..+.. .|. +...+...+...|++++|-+.+-++.+.+.-+
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 0 01122233345556666666655554432 122 23345556778899999999888888776533
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-08 Score=89.81 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=184.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGE 308 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (527)
-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+.. +-+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4568899999999999988885 3478889999999999999999999999998874 2367788888888999999999
Q ss_pred HHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 043284 309 ARNLLDDMLQRKYVPSS-------ALCCKVIDLLCEEGKVEDACELWKRLLR-KNCMPDNAISSTIIHWLCKEGKIWEAK 380 (527)
Q Consensus 309 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (527)
|...++..+...++--. ..+.. -..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99999988664321000 00000 0011111223344455555444 444578888889999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-
Q 043284 381 KLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDK- 458 (527)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 458 (527)
..|+.+....|.|..+||.|...+....+.++|+.-|++..+. .|+ +.+...|.-+|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999998888889999999999999999999999999999975 776 334555666789999999999998887742
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043284 459 --------GCFPNKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 459 --------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
+..++...|..|-.++.-.++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 111223456666666666666654443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-08 Score=86.61 Aligned_cols=192 Identities=6% Similarity=-0.118 Sum_probs=133.4
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh-hh
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE-NL 116 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~ 116 (527)
...+..+..++..+...|++++|...|+.+++..|+.+....++..++.++...|++++|...++++.+..|..+.. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44556678889999999999999999999988777544344678889999999999999999999998875543332 24
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 117 FITVIRNYGLA--------GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 117 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
+..+..++... |++++|.+.|+++.+.. +.+...+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~---------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L---------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H---------HHHH
Confidence 55556666554 78899999999998764 233333322211100 0000 0 0011
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPSMGM--VPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
..+...+.+.|++.+|+..++....... +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678888888888888888776531 123467778888888888888888888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-08 Score=86.90 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
......+.++.+.++++.|.+.++.|.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-07 Score=94.81 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=122.3
Q ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC---cChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 63 IFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK---CGENLFITVIRNYGLAGRPELAVKTFLR 139 (527)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 139 (527)
-|++.+..+|+ +...|...+......++.++|++++++++..-... --..+|.+++..-...|.-+...++|++
T Consensus 1446 DferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34444444443 34456666666666667777777777666541100 0123455555555555666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC
Q 043284 140 IEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN 219 (527)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 219 (527)
+.+.. .....|..|...|.+.+.+++|.++|+.|.++++ .....|...+..+.++++-+.|..++.+.++. .|.
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk 1596 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPK 1596 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cch
Confidence 66531 2234556666666666666677777766666644 34556666666666666666666666665543 122
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043284 220 ---LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP 288 (527)
Q Consensus 220 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 288 (527)
.......+..-.+.|+.+++..+|+..+... +--...|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 1122223333345566666666666666553 2245566666666666666666666666666655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-05 Score=77.22 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=181.1
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChh
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGEN 115 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 115 (527)
+-..+|......+.++...+-+.+-++++++++-....+..+...-+.++-...+ -+..+..+..+++..-+. |
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa--~--- 1052 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA--P--- 1052 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc--h---
Confidence 3344556666788889999999999999999964333333333333444433333 456677777777754311 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKAL 195 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (527)
.+...+...+-+++|..+|++.. .+..+...++. ..++++.|.+.-++.. .+..|..+..+-
T Consensus 1053 ---~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQ 1114 (1666)
T KOG0985|consen 1053 ---DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQ 1114 (1666)
T ss_pred ---hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHH
Confidence 24556677788899999998764 34444454443 3467888887776653 456799999999
Q ss_pred HcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 196 CKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 196 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
.+.|.+.+|++-|-+.- |+..|..++....+.|.|++-.+.+....+..-.|... ..|+-+|++.++..+..
T Consensus 1115 L~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELE 1186 (1666)
T ss_pred HhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHH
Confidence 99999999998886543 67789999999999999999999888887775555544 46788888888877665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 043284 276 KVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
+.+ .-|+......+..-|...+.++.|.-+|..+ ..|..+...+...|++..|...-+
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 543 1356666677777777777777776666533 234455555566666665554433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-05 Score=78.57 Aligned_cols=301 Identities=16% Similarity=0.126 Sum_probs=132.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI 190 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (527)
++.......+++...+-+.+-+++++++.-.+ +..+...-+.++-...+ -+..++.+..+++..- + .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny-D-a~~------ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY-D-APD------ 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC-C-chh------
Confidence 44455556666666777777777776665322 11122222333322222 2333444444444321 1 111
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCC---------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMG---------------------MVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
+...+...+-+++|+.+|++.-..+ -.-....|..+..+-.+.|...+|++-|-+ .
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---a 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---A 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh---c
Confidence 2233334444555555554432100 001233445555555555555554443321 1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 043284 250 GWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCC 329 (527)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (527)
.|+..|..+++...+.|.+++-.+.+.-..+..-+|.+. ..++-+|++.++..+..+++ .-|+.....
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 144445555555555555555555554444333233222 23444555555444433322 123444444
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE 409 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (527)
.+.+-|...+.++.|.-+|.... .|..+...+...|++..|...-++. .+..+|-.+-.+|...+.
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhh
Confidence 45555555555555555444332 2334444455555555554444333 234455555555544443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
+.-| +|...++.....-...++..|-..|-+++.+.+++..+
T Consensus 1265 FrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1265 FRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3322 12211222223334455555555666666555555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-05 Score=71.45 Aligned_cols=188 Identities=12% Similarity=0.163 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 306 SGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE---GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
.+++.++++.....-..-+..+|..+...--.. +..+....+++++.......-..+|..++..-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345556666554432222333333333221111 23566666777776654333445677788887888888999999
Q ss_pred HHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 043284 383 FDEFER-GSIP-SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC 460 (527)
Q Consensus 383 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 460 (527)
|.++.+ ...+ ++..+++++.-|+ .++..-|.++|+--.+. ...++.--...++.+...++-..+..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999833 3333 6677777777665 46778888998876654 222344445667777888898999999999998766
Q ss_pred CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 461 FPNK--TSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 461 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
.|+. .+|..++..-..-|+.+.+.++-++....-+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6654 5788888888888999988888877655444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-07 Score=79.85 Aligned_cols=212 Identities=9% Similarity=0.021 Sum_probs=143.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
.+-.++...++.++|+...+.+++.+|. +..+|.....++...| ++++++..++++.+..|- +..+|......+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~~~l 116 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHHHHH
Confidence 3344455678999999999999888774 6668888877777777 578999999888876443 455666555555
Q ss_pred HhcCCh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC---C
Q 043284 125 GLAGRP--ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK---D 199 (527)
Q Consensus 125 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 199 (527)
.+.|+. ++++..++++.+.+ +.+..+|.....++...|+++++++.++++++. ...|...|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccc
Confidence 566653 67788888888776 577888888888888888899999999888876 233566676666555443 2
Q ss_pred Ch----HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 200 DV----EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR----GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 200 ~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
.. +++++...+++.... -|...|+.+...+... +...+|.+.+.+..+.+ +.+......|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 356666656655432 3566677666666552 33455666666665543 2255556666666654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-06 Score=89.38 Aligned_cols=230 Identities=15% Similarity=0.136 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDR-GWVP---DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYG 294 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (527)
+...|-..|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3456777777788888888888888888764 1111 1346777777777778778888888888764 22345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM-PDNAISSTIIHWLCKE 373 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 373 (527)
.|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-+.|..++.++++.-++ -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 78888888888889999988888752 346677888888888888888888888888775322 1344555566677788
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV--FTYNMLIQGFCKIGNAKEGIRI 451 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 451 (527)
|+.+.+..+|+......|.-...|+.++..-.++|+.+.+..+|++....++.|-. ..|...+..--..|+-..+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 88888888888887777777888888888888888888888888888888776653 3445555444445554444333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-05 Score=70.84 Aligned_cols=409 Identities=11% Similarity=0.128 Sum_probs=247.4
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+..+|..|++-+..+ .++++++.+++++..-| ..+..|...+....+.++++...++|.+.+.. . .+...|..
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP---~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-v--LnlDLW~l 91 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP---SSPRAWKLYIERELASKDFESVEKLFSRCLVK-V--LNLDLWKL 91 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-H--hhHhHHHH
Confidence 456788888877766 99999999999965544 46679999999999999999999999999873 2 24555654
Q ss_pred HHHHHHh-cCChhH----HHHHHHHHHh-cCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 120 VIRNYGL-AGRPEL----AVKTFLRIEK-FNVQR-SVRSLNTLLNAL---------VQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 120 l~~~~~~-~g~~~~----A~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
-+..-.+ .|+... ..+.|+-... .|..+ +...|+..+..+ ..+.+.+...++++++... ....
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cccc
Confidence 4443222 233333 3333443332 24322 223455544433 3344566777888887643 1110
Q ss_pred ------ChhhHHHHHHHHH-------cCCChHHHHHHHHhccc--CCCCCCHH---------------HHHHHHHHHHhc
Q 043284 184 ------NVFTCNILIKALC-------KKDDVEGAIRVLDEMPS--MGMVPNLV---------------THTTILGGYVWR 233 (527)
Q Consensus 184 ------~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~~~--~~~~p~~~---------------~~~~l~~~~~~~ 233 (527)
|-..|..-|+... +...+-.|.++++++.. .|...+.. .|..+|..-..+
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 1112221122111 23345566666666532 12211111 133333322111
Q ss_pred CCh--------HHHHHHHHHHHH-CCCCCCHHhHH-----HHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHH
Q 043284 234 GDI--------ENAKRVFGDILD-RGWVPDATTYT-----VLMDGYIKLGR-------LTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 234 ~~~--------~~a~~~~~~~~~-~~~~~~~~~~~-----~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
+-- ....=++++.+. .+..|+..... ..-+.+...|+ .+++..+++.....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 111112222221 23333322111 11123333444 4555666666554322223333
Q ss_pred HHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHhhHHHHHH
Q 043284 293 YGVMIEAFC---KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP-DNAISSTIIH 368 (527)
Q Consensus 293 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 368 (527)
|..+...-- +.+..+...+.+++++.....--.-+|...+....+..-.+.|+.+|.++.+.+..+ ++.+.++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 333332211 122466777788877765433334567788888889999999999999999887666 6677777777
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN--VFTYNMLIQGFCKIGNAK 446 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 446 (527)
.++ .++..-|.++|+.-.+....++.--...+.-+...++-..+..+|++....++.|+ ...|..++..-..-|+..
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 555 68899999999998666666777777788888899999999999999998877666 468999999999999999
Q ss_pred HHHHHHHHHHH
Q 043284 447 EGIRILEEMLD 457 (527)
Q Consensus 447 ~A~~~~~~~~~ 457 (527)
.+.++-+++..
T Consensus 490 si~~lekR~~~ 500 (656)
T KOG1914|consen 490 SILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHH
Confidence 99999888774
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-05 Score=76.03 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 444 NAKEGIRILEEMLDKGCFP----NKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
|....+.-...|++.-+.| -...|..|+..+....++..|.+.++.+.++.+
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 5555666666666543333 346788999999999999999999999988776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-07 Score=79.95 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH--
Q 043284 74 FSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-- 150 (527)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 150 (527)
.......+..++..+...|++++|...|+++.+..|..+ ....+..+..++...|++++|+..++++.+... .+..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 345677888999999999999999999999988654432 234677888999999999999999999987642 2222
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH
Q 043284 151 -SLNTLLNALVQN--------KRYDLVHLMFKNSRHKFKVVPNV-FTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL 220 (527)
Q Consensus 151 -~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 220 (527)
++..+..++... |++++|.+.|+++... .|+. ..+..+..... .... . .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~-----------~ 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L-----------A 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H-----------H
Confidence 455555666554 6788899999888765 3332 22322221110 0000 0 0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGW--VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.....+...+.+.|++++|...++..++... +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1122466778999999999999999988732 223578889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-06 Score=73.63 Aligned_cols=180 Identities=11% Similarity=0.012 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG-RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFC 301 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (527)
+..+-..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+... .+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 3334444555666777777777776653 224445555555555555 45677777766665532 24445555444444
Q ss_pred ccCCH--HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CCH
Q 043284 302 KGKKS--GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE---GKI 376 (527)
Q Consensus 302 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 376 (527)
+.|+. +++.++++++.+.+.. +..+|.....++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 44442 4556666666655433 5556666666666666666666666666665533 334444443333332 111
Q ss_pred ----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 377 ----WEAKKLFDEFERGSIPSLLTYNTLIAGMCE 406 (527)
Q Consensus 377 ----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (527)
+.......++....|.|...|+.+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 233333333333344455555555444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=83.41 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 220 LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEA 299 (527)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (527)
...-..+...+...|-...|..+++++- .|...+.+|...|+..+|..+..+..+. +|+...|..+...
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3344556667778888888888887653 4566788888899999998888887774 6788888888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 043284 300 FCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEA 379 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 379 (527)
.....-+++|.++.+..... .-..+.....+.++++++.+.++.-.+.+ +....+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888888776443 11122222344788999999999888765 34667788888888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.+.|.......|.+...||.+..+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999988888899999999999999999999999999999876 44556677777788899999999999998874
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-06 Score=72.62 Aligned_cols=159 Identities=10% Similarity=0.045 Sum_probs=116.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
+..|...|+++.+....+.+... . ..+...++.+++...++......+.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 44667778777764443222111 0 01223566777788888887777888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGF-CKIGN--AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.++++++++.+ +-+...+..++..+.+.|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888763 23566777777764 56676 589999999999864 2256778888889999999999999999
Q ss_pred HHHhCCCCChhhHHHH
Q 043284 489 MATASGSVESDSWNFL 504 (527)
Q Consensus 489 ~~~~~~~~~~~~~~~l 504 (527)
++.+..+++..-...+
T Consensus 169 ~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 169 KVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhhCCCCccHHHHH
Confidence 9988888877655443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-07 Score=87.14 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=178.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
..-..+...+.+.|-...|..+|++.. .|...+.+|...|+.++|..+..+-.+ -+|++..|..+++..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 334567788899999999999998865 467788899999999999999988887 467888888888887
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 336 CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGR 415 (527)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 415 (527)
....-+++|.++.+..... .-..+.....+.++++++.+.|+......+-...+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888888765432 112222233447899999999999877777788999999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 416 LWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 416 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
.|...... .|| ...||.+-.+|.+.|+-.+|...++++.+.+ .-+...|........+.|.+++|.+.+.++....
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99998865 565 6789999999999999999999999999877 4456667767777889999999999999876544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.9e-06 Score=68.25 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=76.6
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL---- 268 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 268 (527)
..|++.|++++|++.+.... +......=...+.+..+++.|.+.++.|.+.. +..+.+.|..+|.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555666666666555411 23333333334445555666666666665542 445555555555432
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-hHHHHH
Q 043284 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKV-EDACEL 347 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~ 347 (527)
+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+..... ++.+...++.+....|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3456666666666542 2455556666666666666666666666666655433 444444444444444433 223334
Q ss_pred HHHHHh
Q 043284 348 WKRLLR 353 (527)
Q Consensus 348 ~~~~~~ 353 (527)
+..+..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-07 Score=76.21 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
-+..|...|+++.+....+... .+. . .+...++.+++...+++..+..|. +...|..+...|..
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~---~---------~~~~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~ 85 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPL---H---------QFASQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLW 85 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Ccc---c---------cccCchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Confidence 4456678888888765554431 111 0 112356667777778777775444 77788888888889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL-VQNKR--YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
.|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++++.... .+.+...+..+...+.+.|++++
T Consensus 86 ~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 86 RNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHH
Confidence 999999999999888876 56777787777764 66676 48899999888876 33466778888888888999999
Q ss_pred HHHHHHhcccCCCCCCHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~ 224 (527)
|+..|+++.+.. +|+..-+.
T Consensus 163 Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 163 AIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHhhC-CCCccHHH
Confidence 999999888764 34444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-07 Score=73.34 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=45.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.++..+...|++++|...|++++..+| .+...|..++.++.+.|++++|...|+++....|. +...+..+..++.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--~~~a~~~lg~~l~ 103 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--HPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHH
Confidence 344444555555555555555544443 24445555555555555555555555555543222 3344444555555
Q ss_pred hcCChhHHHHHHHHHHhc
Q 043284 126 LAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~ 143 (527)
..|++++|+..|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00027 Score=69.35 Aligned_cols=221 Identities=16% Similarity=0.102 Sum_probs=136.3
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
...++++.|.+-.++.++.+|+ ...+-..-.-.+.+.|+.++|..+++......+. +..+...+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhh
Confidence 4568889999999988877663 2222222223455889999999888877664333 7777888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC-C------
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL----VHLMFKNSRHKFKVVPNVFTCNILIKALCKKD-D------ 200 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------ 200 (527)
+|..+|++.... .|+......+..+|++.+++.+ |.++++... -+...+=++++.+.+.- .
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p------k~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP------KRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------cccchHHHHHHHHHHhccCCccccc
Confidence 999999998875 4667777778888888877654 445554332 23344334444443321 1
Q ss_pred ---hHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 043284 201 ---VEGAIRVLDEMPSMG-MVPNLVTHTTILGGYVWRGDIENAKRVFG-DILDRGWVPDATTYTVLMDGYIKLGRLTDAV 275 (527)
Q Consensus 201 ---~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 275 (527)
..-|.+.++.+.+.+ ..-+..-...-.......|.+++|.+++. ...+.-..-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 123555566665543 11122222223334456778888888873 3333322334444445566677777777777
Q ss_pred HHHHHHHHCC
Q 043284 276 KVMDEMEDNG 285 (527)
Q Consensus 276 ~~~~~~~~~~ 285 (527)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 7777777664
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-06 Score=68.22 Aligned_cols=120 Identities=20% Similarity=0.204 Sum_probs=62.4
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK----EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE 409 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (527)
++.+..+.+.|.+.+++|.+.+ +..+.+.|..++.+ .+.+.+|.-+|+++....+|+..+.+..+.++...|+
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3444455555555555555432 34444444444433 2345566666666655555666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE-GIRILEEMLD 457 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 457 (527)
+++|..+++...... ..++.+...++-+-...|...+ ..+.+.++..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666666666542 2244455444444444444333 3344444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-06 Score=71.07 Aligned_cols=164 Identities=16% Similarity=0.064 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+... ..+...+...|+-+.+..+........+. +.......+...++.|++..|+..+++..... ++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 4445 66666777778777777777775543332 55566667788888888888888888888765 67788888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
-+|.+.|+++.|..-|.+..+- ...+....+.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 8888888888888888877765 233456677777777778888888888877766542 2566666677777778888
Q ss_pred HHHHHHHHHHH
Q 043284 237 ENAKRVFGDIL 247 (527)
Q Consensus 237 ~~a~~~~~~~~ 247 (527)
++|..+...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88877665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-06 Score=80.93 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=88.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 321 YVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
...+...+..+..+..+.|.+++|..+++.+.+..+ .+......++..+.+.+++++|...+++.....+.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 334566666666666677777777777777666532 2445555566666677777777777777766666666666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777766531 223566666666667777777777777776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-06 Score=83.82 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=100.6
Q ss_pred CCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC----
Q 043284 36 KPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK---- 111 (527)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 111 (527)
=++.+...+..|+..+...+++++|.++.+..++..|+ ....|..++..+...++...+.-+ .+....+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 34455567888999999999999999999988776663 445666666677777776666555 333321110
Q ss_pred -------------cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 112 -------------CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 112 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+..++..++.+|-+.|+.++|..+++++++.. +.|+.+.+.+...|... ++++|.+++.+....
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 122455566666667777777777777777766 56666777777777766 777777766665543
Q ss_pred CCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 179 FKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
+...+++..+.++|.++...
T Consensus 179 ----------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 ----------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ----------------HHhhhcchHHHHHHHHHHhc
Confidence 34444555555555555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=86.92 Aligned_cols=150 Identities=12% Similarity=-0.039 Sum_probs=124.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 72 PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
..+..+..++..|..+....|.+++|..+++.+.+..|. +......++..+.+.+++++|+..+++....+ +.+...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 344567889999999999999999999999999987555 67788889999999999999999999999876 567788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTIL 227 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 227 (527)
...+..++.+.|++++|..+|+++... .+.+..++..+..++.+.|+.++|...|++..+.. .|....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888999999999999999999999874 23357788899999999999999999999887642 23445554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-06 Score=69.24 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=119.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA 408 (527)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (527)
..+...+...|+-+....+........ +.+.......+....+.|++..|...|.+.....++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 455666667777777777776654433 3366666667788888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
+++.|..-|.+..+.. .-++..++.+.-.+.-.||.+.|..++......+ .-|..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888888762 2345667777777778888888888888887654 2266667778888888888888888776
Q ss_pred H
Q 043284 489 M 489 (527)
Q Consensus 489 ~ 489 (527)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 5
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-05 Score=80.42 Aligned_cols=238 Identities=11% Similarity=0.081 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+..++..++..+...+++++|.++.+...+..|..+. .|..+...+.+.++.+.+..+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv--~~l--------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL--NLI--------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh--hhh---------------
Confidence 4555666666666666666666666655554333222 232333344555554444333 221
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.......++..+..+...+... ..+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 1122222222222222222221 1233455556666666666666666666666655 23555666666666666 66
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDM 316 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (527)
++|++++.+.+.. +...+++..+.+++.++....+. +... -..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~----------------f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDF----------------FLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchH----------------HHHHHHHH
Confidence 6666666555443 44455666666666666654211 1112 22222222
Q ss_pred HHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043284 317 LQR-KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC 371 (527)
Q Consensus 317 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (527)
... +..--..++..+...|...++++++..++..+.+.... +......++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 221 11222334445566677777788888888888776543 4445555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=66.77 Aligned_cols=199 Identities=17% Similarity=0.106 Sum_probs=156.0
Q ss_pred ccCCHHHHHHHHHHHHH---cC-CCCCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 302 KGKKSGEARNLLDDMLQ---RK-YVPSSA-LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 302 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
...+.++..+++.++.. .| ..++.. .+..++-+....|+.+.|...++.+...- +-+..+...-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 46788999999998875 33 344443 45667777888999999999999988874 44555544445556778999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 377 WEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
++|.++++.+....|.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999998888888888887777777788888999888888875 67799999999999999999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 457 DKGCFP-NKTSFSLLIEGLYESG---NEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 457 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
-. .| ++..+..+...++-.| +.+-|+++|+++.+..+.+...|..+
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 74 45 4556777887766554 67789999999998876444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=69.58 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=81.3
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 61 LQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
...|+++++.+|+ .+......+...|++++|...|+.+....|. +...+..+..++...|++++|+..|++.
T Consensus 13 ~~~~~~al~~~p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPE------TVYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456666554442 3556677777888888888888888776443 6677778888888888888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 141 EKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
...+ +.+...+..+..++...|++++|...|+.....
T Consensus 85 l~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 85 LMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8765 567777888888888888888888888887764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-05 Score=63.79 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=147.4
Q ss_pred hcCChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 043284 267 KLGRLTDAVKVMDEMED---NG-VEPNEV-TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKV 341 (527)
Q Consensus 267 ~~g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (527)
...+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34578999999988864 33 344543 45666777888999999999999998864 33444444445556678999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 342 EDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
++|+++++.+...+ +.|..++..-+...-..|..-+|++-+....+....|...|..+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999987 45777777777777888998899999999988888999999999999999999999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHccC---CHHHHHHHHHHHHHC
Q 043284 422 EKGVEP-NVFTYNMLIQGFCKIG---NAKEGIRILEEMLDK 458 (527)
Q Consensus 422 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 458 (527)
-. .| ++..+..+...+.-.| +...|.++|.+.++.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65 45 4455566666554444 566799999999985
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-05 Score=71.32 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=126.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
...+...|+++.|+..++.+++.. +.++.........+.+.++..+|.+.++++....|........+..+|.+.|++.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 334557789999999999988864 4577777888899999999999999999997777666788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+|+.+++..... .+-|+..|..|.++|...|+..++..... ..+...|++++|...+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 999999988875 35578899999999999998887766544 34677899999999999998
Q ss_pred hCCCCChhhHHHHHH
Q 043284 492 ASGSVESDSWNFLLT 506 (527)
Q Consensus 492 ~~~~~~~~~~~~ll~ 506 (527)
+....+...|.-.=.
T Consensus 453 ~~~~~~~~~~aR~da 467 (484)
T COG4783 453 QQVKLGFPDWARADA 467 (484)
T ss_pred HhccCCcHHHHHHHH
Confidence 888777666654433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-07 Score=53.51 Aligned_cols=32 Identities=50% Similarity=1.040 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 424 GVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455 (527)
Q Consensus 424 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (527)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-06 Score=66.31 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=68.5
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++.++...|+ +......++..+...|++++|.+.|+.+.+..|. +...+..+..++...|++++|...+++..+.
T Consensus 6 ~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444442 3445566666666677777777777776664332 5556666666777777777777777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 144 NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+ +.+...+..+..++...|++++|...|+...+.
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 445566666666677777777777777666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9e-05 Score=67.76 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGR 270 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (527)
...+.+.++.++|.+.++++.... |+ ......+..++.+.|++.+|+.+++...... +.|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 334444444444444444443331 22 2223333334444444444444444443332 2234444444444444444
Q ss_pred hhHHHHHHH
Q 043284 271 LTDAVKVMD 279 (527)
Q Consensus 271 ~~~a~~~~~ 279 (527)
..++..-..
T Consensus 424 ~~~a~~A~A 432 (484)
T COG4783 424 RAEALLARA 432 (484)
T ss_pred hHHHHHHHH
Confidence 444443333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=52.59 Aligned_cols=32 Identities=41% Similarity=0.668 Sum_probs=17.2
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHHhc
Q 043284 180 KVVPNVFTCNILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.4e-06 Score=64.63 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=68.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
++++....+.+......++..+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++..+.+ +.
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~ 83 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PD 83 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 333333333444555566666666677777777776666542 2345566666666666777777777777666543 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
+...+..++.++...|++++|.+.++.+.+..+.+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 44556666667777777777777777766665433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-06 Score=63.85 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC-cChhhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK-CGENLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~ 121 (527)
.+..++..+.+.|++++|.+.|+.+++..|+......++..++.++.+.|+++.|...|+.+....|.. ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 456677788888888888888888877666544445677778888888888888888888887653332 2345677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.++...|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 78888888888888888887764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-06 Score=65.97 Aligned_cols=118 Identities=11% Similarity=0.043 Sum_probs=69.1
Q ss_pred hcCCchHHHHHHHHhhhCCCCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 043284 90 RARAFDAVESLLTELKQNPEIK-CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 166 (527)
..++...+...++.+.+..|.. ........+...+...|++++|...|+.+......++ ......+..++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666666666553322 2234445566666677777777777777766542222 123444566666677777
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHh
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDE 210 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 210 (527)
+|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777554322 23444555666777777777777777664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-05 Score=63.19 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=47.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHcCCCh
Q 043284 127 AGRPELAVKTFLRIEKFNVQRS---VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN--VFTCNILIKALCKKDDV 201 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 201 (527)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.... ..|+ ......+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 444444444444444432 122 1222233344444555555555555544431 1111 11222334444445555
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGD 245 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (527)
++|+..++...... .....+.....++.+.|++++|...|+.
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555554433221 2233344444455555555555554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0028 Score=62.60 Aligned_cols=224 Identities=11% Similarity=0.099 Sum_probs=153.7
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL 167 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (527)
....+++.+|.....++.+..|..+...++.++ .+.+.|+.++|..+++.....+. .|..+...+-.+|...|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 346788999999999998876654333333333 34689999999999988877663 488899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH----HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC--------
Q 043284 168 VHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG----AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD-------- 235 (527)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------- 235 (527)
|..+|++.... .|+......+..+|++.+++.+ |+++++...+ +...+=.+++...+.-.
T Consensus 96 ~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 96 AVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccc
Confidence 99999999876 5677777778888888877764 5555554333 44555555555443211
Q ss_pred --hHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 236 --IENAKRVFGDILDRG-WVPDATTYTVLMDGYIKLGRLTDAVKVMD-EMEDNGVEPNEVTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 236 --~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (527)
..-|.+.++.+.+.+ ..-+..-.-.....+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 234556666666654 21122222333445567889999999983 44443333344555566777888899999888
Q ss_pred HHHHHHHcCCC
Q 043284 312 LLDDMLQRKYV 322 (527)
Q Consensus 312 ~~~~~~~~~~~ 322 (527)
+-.++...+..
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 88888887644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.3e-05 Score=64.27 Aligned_cols=73 Identities=5% Similarity=-0.072 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE 114 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 114 (527)
......+..+...|++++|++.|+.++...|+.+....+...++.++.+.+++++|...+++..+..|..++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 3344677778889999999999999988887654444455778889999999999999999999986665544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.002 Score=58.60 Aligned_cols=438 Identities=12% Similarity=0.112 Sum_probs=226.6
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHH------HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH-
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDT------YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR- 122 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~- 122 (527)
.+.+++++.+|.++|.++.+... .++.. -..++.++. .++.+.....+....+..|.. .|..+..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~---~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s----~~l~LF~~ 86 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE---SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKS----AYLPLFKA 86 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh---cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 45578888888888888854322 23222 223444443 345666666666666654422 2332222
Q ss_pred -HHHhcCChhHHHHHHHHHHhc--CCCCC---HHHH---------HHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCC
Q 043284 123 -NYGLAGRPELAVKTFLRIEKF--NVQRS---VRSL---------NTLLNALVQNKRYDLVHLMFKNSRHKF---KVVPN 184 (527)
Q Consensus 123 -~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~---------~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~ 184 (527)
.+-+.|.+++|++.+...... +..+. ...+ +..+.++...|++.+++.+++++..+. ...-+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 234678888888888776654 22221 1111 234566777888888888888777652 11236
Q ss_pred hhhHHHHHHHHHcC--------CC-------hHHHHHHHHhcccC------CCCCCHHHHHHHHHHHHhc--CChHHHHH
Q 043284 185 VFTCNILIKALCKK--------DD-------VEGAIRVLDEMPSM------GMVPNLVTHTTILGGYVWR--GDIENAKR 241 (527)
Q Consensus 185 ~~~~~~l~~~~~~~--------~~-------~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~ 241 (527)
..+|+.++-.+.+. .. ++.+.-+..+|... .+.|.......++....-. ....--.+
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 66777654444321 01 11122222222211 0112222222222221111 11111122
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 242 VFGDILDRGWVPDAT-TYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP----NEVTYGVMIEAFCKGKKSGEARNLLDDM 316 (527)
Q Consensus 242 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (527)
++..-...-+.|+.. +...+...+.. +.+++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222222222333322 22233333333 5666666666655442221 1345666777777777777777777766
Q ss_pred HHcCCCCCHHhHHH-------HHHHHH-hcC---CHhHHHHHHHHHHhCCCCCCHhhHHHHH---HHHHHcCC-HHHHHH
Q 043284 317 LQRKYVPSSALCCK-------VIDLLC-EEG---KVEDACELWKRLLRKNCMPDNAISSTII---HWLCKEGK-IWEAKK 381 (527)
Q Consensus 317 ~~~~~~~~~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~ 381 (527)
.-.++. ...-.. +-+..+ ... +...-+.+|+.....++. .......++ .-+-+.|. -++|..
T Consensus 325 ~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 325 KILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 554322 221111 111111 111 122233444444443321 111111222 22334455 788888
Q ss_pred HHHHHhcCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHccCCHHHH
Q 043284 382 LFDEFERGSIPSLLTYNTLIA----GMCE---SAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQG--FCKIGNAKEG 448 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A 448 (527)
+++.+..-.+-|...-|.+.. +|.+ ...+..-+.+-+-+.+.|+.|- ...-|.|.++ +...|++.++
T Consensus 402 LLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 402 LLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 888886655556655444332 2322 2334444455555556677664 3344555554 4678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 449 IRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
.-.-..+.+ +.|++.+|..++.++....++++|+.++... ||+...+++-..
T Consensus 482 ~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~dskvq 533 (549)
T PF07079_consen 482 YLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDSKVQ 533 (549)
T ss_pred HHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHHHHH
Confidence 877666666 7899999999999999999999999999986 556666665444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-05 Score=71.30 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=77.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI 192 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (527)
+......++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.... .+.+........
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa 241 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQA 241 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44444556666666666777777777766543 33 3334556666666666666666666654 233455555555
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
..+.+.++++.|+.+.+++.... |+ ..+|..|..+|...|+++.|+..++.+-
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666777777777777666653 33 3466777777777777777776666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.9e-05 Score=70.12 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 82 HSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
..++..+...++++.|+.+|+++.+.. +.....+++.+...++..+|++++.+..+.. +.+...+..-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~-----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD-----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC-----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 334444444455555555555555432 1123334444444555555555555554432 3344444444455555
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 212 (527)
.++++.|+.+.++.... .+-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555555555443 11223355555555555555555555555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-05 Score=59.08 Aligned_cols=101 Identities=8% Similarity=-0.006 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+.+....+...+...|++++|.++|+.+...++. +...|..|..++-..|++++|+..|......+ +.++..+..+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4556667777777888999999999888876544 66778888888888889999999998888877 57788888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
.++...|+.+.|.+.|+..+...+
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888999988888888776643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-05 Score=60.30 Aligned_cols=96 Identities=8% Similarity=0.051 Sum_probs=85.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
....++..+...|++++|.++|+.+...+| -+..-|..+..++...|++++|+..|..+....+. ++..+..+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp---~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--dp~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDA---WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHHH
Confidence 456778888899999999999999988777 47779999999999999999999999999987654 6778889999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++...|+.+.|++.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=70.33 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..++..|++++|+..|+++++..|. +...|..+..++...|++++|+..++++.+..|. +...|..+..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~a~~~lg~~ 79 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHH
Confidence 345677888999999999999999988774 6778999999999999999999999999887554 66788888999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
|...|++++|+..|++..+.+ +.+......
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~-P~~~~~~~~ 109 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLA-PGDSRFTKL 109 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 999999999999999999875 334444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-05 Score=57.23 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF--PNKTSFSL 469 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 469 (527)
++..++..+...|++++|.+.|+.+... .|+ ...+..+..++.+.|+++.|...|+++...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4555666777777888888888777754 222 345556777777788888888888877764211 11345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCChhh
Q 043284 470 LIEGLYESGNEGEVGKVVSMATASGSVESDS 500 (527)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 500 (527)
++.++.+.|+.++|.+.++.+....|.+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777888888888888877776654433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-05 Score=63.85 Aligned_cols=91 Identities=10% Similarity=-0.063 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
....+..++..+...|++++|...|+.+++..+........+..++..+.+.|++++|...++++.+..+. +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--QPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHH
Confidence 33456677777777788888888877776554432222456777777777777777777777777765333 4455556
Q ss_pred HHHHHHhcCChhH
Q 043284 120 VIRNYGLAGRPEL 132 (527)
Q Consensus 120 l~~~~~~~g~~~~ 132 (527)
+..++...|+...
T Consensus 112 lg~~~~~~g~~~~ 124 (172)
T PRK02603 112 IAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHcCChHh
Confidence 6666666665433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0034 Score=56.45 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=47.2
Q ss_pred HHccCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 043284 300 FCKGKKSGEARNLLDDMLQRK---YVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKI 376 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (527)
..+.|++..|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--+...+.+.. -...+..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 345677777777777666532 3344455555556666667777776666666544210 111222223344455666
Q ss_pred HHHHHHHHHH
Q 043284 377 WEAKKLFDEF 386 (527)
Q Consensus 377 ~~a~~~~~~~ 386 (527)
++|.+-|+..
T Consensus 338 e~AV~d~~~a 347 (486)
T KOG0550|consen 338 EEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHH
Confidence 6666666665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0098 Score=57.22 Aligned_cols=219 Identities=13% Similarity=0.062 Sum_probs=140.6
Q ss_pred CChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh--------hhHHHHHHHHHh
Q 043284 55 QNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE--------NLFITVIRNYGL 126 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~ 126 (527)
=.+++|.++.+.- |-+..|..+.......-.++.|...|-+...-.+++.-. ..-..-+. +-
T Consensus 677 vgledA~qfiEdn--------PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~ 746 (1189)
T KOG2041|consen 677 VGLEDAIQFIEDN--------PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AF 746 (1189)
T ss_pred hchHHHHHHHhcC--------CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hh
Confidence 3456666665422 567799999888887778888888887766543332111 11111122 23
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
-|++++|.+++-.+.+++ ..+....+.|++-.+.++++.--...+...-...|+.+...+.....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998877643 35667778888888888876543221122235578888888888888999988
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
.|..-... ...+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.|-+..
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---- 879 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---- 879 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----
Confidence 88764421 23456666666666655444333 3355667778888888888888887765432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 287 EPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
.| ...+..|...++|.+|.++-+.
T Consensus 880 ~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 880 LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 12 2345567777778777776554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0048 Score=55.56 Aligned_cols=283 Identities=13% Similarity=0.045 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
....+..+.++.++..|++.+..+++..|. +...|..-+..+...|++++|.--.+...+..+. .........++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~--~~k~~~r~~~c 126 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG--FSKGQLREGQC 126 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhheecCCC--ccccccchhhh
Confidence 456666777888899999999888877664 5667777777788888888887777666554222 22234445555
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH-HHHHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI-KALCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 202 (527)
+...++..+|.+.++. ...+ ....++..++.+......+|....|..+- .++.-.|+++
T Consensus 127 ~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 5555555555555541 1111 11222223333333322334444444443 3445567777
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHh-------------HHHHHHHHHhcC
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATT-------------YTVLMDGYIKLG 269 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g 269 (527)
+|...--..++... .+......-..++.-.++.+.+...|++.+..+ |+... +..-.+-..+.|
T Consensus 187 ~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 77776666555431 122222222234445677777777777777653 22211 122233456788
Q ss_pred ChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 043284 270 RLTDAVKVMDEMEDNG---VEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACE 346 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (527)
.+..|.+.|.+.+... ..++...|........+.|+.++|+.--+.....+.. -...+..-..++...++|+.|.+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998887643 2345566767777778889999988887777664211 12233344556667788888888
Q ss_pred HHHHHHhCC
Q 043284 347 LWKRLLRKN 355 (527)
Q Consensus 347 ~~~~~~~~~ 355 (527)
-++...+..
T Consensus 343 d~~~a~q~~ 351 (486)
T KOG0550|consen 343 DYEKAMQLE 351 (486)
T ss_pred HHHHHHhhc
Confidence 888887754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00023 Score=56.24 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=104.1
Q ss_pred CChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHH
Q 043284 55 QNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAV 134 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 134 (527)
..+.+|.+-++.+ |+...-..+...+...|++.+|...|++... .+...+......+.++....+++..|.
T Consensus 74 R~~Rea~~~~~~A--------pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 74 RHLREATEELAIA--------PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHHHHHHHHhhc--------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 3455555555555 5666677888888999999999999999887 566667888888999999999999999
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043284 135 KTFLRIEKFNV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLD 209 (527)
Q Consensus 135 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 209 (527)
..++++-+.+. ..++.....+.+.+...|.+..|+..|+..... -|+...-.-....+.++|+.+++..-+.
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 99998877641 122445566778888999999999999988865 4555544444455667776665544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=65.50 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhC---CCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 83 SIIHKLARARAFDAVESLLTELKQN---PEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..|...|++++|.+.|.++... .+. ......|.....+|.+ +++++|++.+++.. ..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~---------------~~ 103 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI---------------EI 103 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH---------------HH
Confidence 3355666777777777777766432 010 0011223333333322 25555555554443 33
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC-CChHHHHHHHHhcccC----CCC-CCHHHHHHHHHHHHh
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK-DDVEGAIRVLDEMPSM----GMV-PNLVTHTTILGGYVW 232 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~ 232 (527)
|...|++..|-..+.++ ...|-.. |++++|++.|++..+. |-. .-..++..+...+.+
T Consensus 104 y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 104 YREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 44455544444433332 2233333 4555555555444321 100 012234455556666
Q ss_pred cCChHHHHHHHHHHHHCCCC-----CCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 233 RGDIENAKRVFGDILDRGWV-----PDAT-TYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.|++++|.++|+++...... .+.. .+...+-++...||...|.+.+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666665543211 1111 1222233455556666666666665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.8e-06 Score=59.13 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=43.9
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
+|+++.|+.+|+++++..|.. ++...+..++.++.+.|++++|..++++ .+..+. +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHH
Confidence 466666666666666555531 1344455566666666666666666665 221111 223333446666666666666
Q ss_pred HHHHHH
Q 043284 134 VKTFLR 139 (527)
Q Consensus 134 ~~~~~~ 139 (527)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-06 Score=58.27 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=42.1
Q ss_pred cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 91 ARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170 (527)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 170 (527)
.|+++.|+.+++++.+..+..++...+..+..++.+.|++++|.+++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666665433212333444556666666666666666655 2222 1222333344566666666666666
Q ss_pred HHHH
Q 043284 171 MFKN 174 (527)
Q Consensus 171 ~~~~ 174 (527)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-05 Score=54.65 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|...++.+++..| .+...+..++..+...+++++|.+.++......+. +...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP---DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHH
Confidence 34566666777777777777777765544 23356666666666777777777777766654322 33455566666
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043284 124 YGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~ 142 (527)
+...|++++|...+....+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 6666777777766666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.4e-05 Score=65.00 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~ 122 (527)
|......+.+.|++++|+..|+.+++..|+..-.+.++..++..+...|++++|...|+.+.+..|. +.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444567789999999999998888875555678888899999999999999999998876343 223455666777
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++...|+.++|..+|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888888888775
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=56.99 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...+...+..+...|++++|.+.|+.+....|..+- ......++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3334444555556667777777777777665443211 1122455666677777777777777776653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.2e-05 Score=60.78 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
...|..++..+...|++++|...|+++....+.++ ...++..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34455556666666666666666666655422211 12355666666666666666666666666543 23344444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 043284 157 NALV-------QNKRYDLVHLMFK 173 (527)
Q Consensus 157 ~~~~-------~~g~~~~a~~~~~ 173 (527)
..+. ..|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 5666654444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00026 Score=53.32 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~ 122 (527)
...++.++-..|+.++|+.+|++++........-...+..+...+...|++++|..+++......|. ..+......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3456777777888888888888886543322222456777777788888888888888877765332 122333333445
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043284 123 NYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~ 142 (527)
++...|+.++|++.+-....
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66677888888777766553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.017 Score=55.62 Aligned_cols=374 Identities=14% Similarity=0.113 Sum_probs=205.5
Q ss_pred CCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHH------HHHHHHHHHhcCCchHHHHHHHHhhhCC
Q 043284 35 IKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDT------YHSIIHKLARARAFDAVESLLTELKQNP 108 (527)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 108 (527)
+++.|.|..++.++......-.++-|...|-+. ...+|++.-... -....+.-.--|+|++|.++|-.+..+
T Consensus 686 iEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc-~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr- 763 (1189)
T KOG2041|consen 686 IEDNPHPRLWRLLAEYALFKLALDTAEHAFVRC-GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR- 763 (1189)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhh-ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-
Confidence 456788899999999988888999999888777 334443211000 011122223348999999999887654
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh
Q 043284 109 EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT 187 (527)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 187 (527)
+ ..+..+.+.|++-...++++.--... -..-..+++.+...+.....+++|.+.|......
T Consensus 764 ----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 764 ----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred ----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 1 24566677888888777776532110 0112457888888888888999999888665421
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
...+.++....++++-..+-..+.+ +....-.+...+...|.-++|.+.+-+ .+. |. ..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHHHHHH
Confidence 2356666666777776666666654 455566677788888888888776533 221 11 33456667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHh-HH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTYG--------------VMIEAFCKGKKSGEARNLLDDMLQRK---YVPSSAL-CC 329 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~-~~ 329 (527)
.+++.+|.++-+... -|.+.+.. ..|..+.+.|.+-.|-+++.+|.+.. ..|-... -.
T Consensus 891 LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 777877777765543 12222211 11233445555555666666665421 1121111 01
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAE 409 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (527)
.++.++. ..+..++.+-.+....+|...+... +...|-..++-++.+..-.+ .....+-.|++--...|.
T Consensus 967 YVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wrg--AEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 967 YVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRG--AEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhh--HHHHHHHHHHHHHHHhch
Confidence 1111111 1222333333344434443222111 11222233333333322111 123334444555556688
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 410 LTEAGRLWDDMVEK-GVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 410 ~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
++.|++.--.+.+. .+-|....|..+.-+.+....+...-+.|-++..
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 88887755444432 3456677777776666666666655555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00031 Score=62.78 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK-EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC 405 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (527)
+|..++....+.+..+.|+.+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56677777777777888888888887543 3344555555555334 456666888888886666677777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043284 406 ESAELTEAGRLWDDMVEKGVEPNV---FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIE 472 (527)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 472 (527)
..|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+..+.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 888888888888888765 32222 36777777777778888888888777763 344333433333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=45.28 Aligned_cols=33 Identities=48% Similarity=0.993 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN 428 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 428 (527)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666666555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=45.26 Aligned_cols=33 Identities=45% Similarity=0.960 Sum_probs=31.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN 463 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 463 (527)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=62.06 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
-+.-+.+.++|++|+..|.++++..| .|+.-|..-..+|.+.|.++.|++-.+.....+|. ....|..|..+|..
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P---~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDP---TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--YSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--HHHHHHHHHHHHHc
Confidence 33344455566666666666665555 35555556666666666666666666666554332 44556666666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSL 152 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~ 152 (527)
.|++++|++.|++.++. .|+..+|
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHH
Confidence 66666666666666553 3444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-05 Score=52.26 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
.++..+.+.|++++|+..|+.+++..|+ +...+..++.++...|++++|...|+++.+..|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3566777788888888888888766653 677777888888888888888888887766533
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00016 Score=64.56 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL-AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
+|..++....+.+..+.|+.+|.++.+.... +..+|...+..-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5666677777777777777777777754332 34455544444233 45555577777777665 35666667777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVP-NVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
+...|+.+.|..+|++......... ....|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777765422111 223566666666666666666666666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.8e-05 Score=44.74 Aligned_cols=32 Identities=31% Similarity=0.699 Sum_probs=15.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0016 Score=63.26 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=93.7
Q ss_pred CCCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 043284 356 CMPDNAISSTIIHWLCKE-----GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA--------ELTEAGRLWDDMVE 422 (527)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 422 (527)
.+.+...|...+++.... ++...|..+|++.....|.+...|..+..++.... +...+.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666676666664332 22667777888876666666666666555543321 22334444444333
Q ss_pred c-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 423 K-GVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 423 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
. ....+...|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++....|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 2 123345667666666666789999999999998854 7888888888889999999999999999888876544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=52.64 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+..++..+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD--NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 445556666667777777777766654322 33455566666666677777777777666654 334455666666666
Q ss_pred hcCCHHHHHHHHHHhhh
Q 043284 161 QNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~ 177 (527)
..|+++.|...+.....
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=44.38 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEP 427 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 427 (527)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00065 Score=57.54 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC 112 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 112 (527)
....+..+...|++.+|++.|+.+....|+.+-...+...++.++.+.|+++.|...+++..+..|..+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 345666777888888888888888777777666677777888888888888888888888777655433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=61.97 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=72.2
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 448 (527)
..+.+++.+|...|.....-.|.|.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 556678888888888887777778888888888888888888888877777754 444 45677777888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 043284 449 IRILEEMLDKGCFPNKTSFSL 469 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~ 469 (527)
++.|++.++ +.|+..+|-.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 888888877 5677666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00034 Score=64.93 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 83 SIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN 162 (527)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (527)
..+..+...|++++|++.|+++.+..|. +...|..+..+|...|++++|+..+++++... +.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 3455666778888888888888876544 56677778888888888888888888888765 45677777888888888
Q ss_pred CCHHHHHHHHHHhhhc
Q 043284 163 KRYDLVHLMFKNSRHK 178 (527)
Q Consensus 163 g~~~~a~~~~~~~~~~ 178 (527)
|++++|+..|++....
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888887764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00027 Score=65.59 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHH
Q 043284 145 VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKV-VPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTH 223 (527)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 223 (527)
.+.+......++..+....+.+.+..++-+....... .--..|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556666667777777777778888887777654211 122345668888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (527)
+.++..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888776666666666666655554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00056 Score=56.34 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
....+..++..+...|++++|...|+++.+..+..++ ...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3456788888888899999999999998865333222 3577888889999999999999999988864 4456677777
Q ss_pred HHHHHhcCCHHHHHH
Q 043284 156 LNALVQNKRYDLVHL 170 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~ 170 (527)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 778877777555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=52.15 Aligned_cols=132 Identities=10% Similarity=0.009 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI 192 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 192 (527)
+..--..+..+..+.|+..+|...|++...--+-.|......+.++....+++..|...++.+.+......++.+.-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 44445577888888899999999888888754556777788888888888888888888888876532222345566677
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+.+...|....|...|+.....- |+...-......+.++|+.+++..-+..+
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88888888888888888887753 45444333444556677666655444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00046 Score=66.91 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc
Q 043284 56 NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR--------AFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (527)
+.+.|+.+|+++++.+|++ ..+|..+..++.... ++..+.+..++.......+.+...|..+.......
T Consensus 357 ~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 3667777777777777753 334444433332211 12233333333333222223444555555555556
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 128 GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666654 45566666666666666666666666665543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00031 Score=65.23 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=83.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCCHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRK--NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF-ERGSIPSLLT 396 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 396 (527)
+.+.+......++..+....+.+.+..++-+.... ....-+.+..++++.|.+.|..+.+..++..= ..|.-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33445556666677777777777777777776654 22222344567788888888888887777654 6677788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+|.++..+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777777666556666666655555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=57.18 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCChhhHH
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK---RYDLVHLMFKNSRHKFKVVPNVFTCN 189 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (527)
|..-|..|...|...|+++.|...|.+..+.. ++++..+..+..++.... ...++..+|+++... .+.|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 55566666666666666666666666666554 455555555555554432 234566666666554 233444455
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccC
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555666666666666666666655
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0033 Score=56.51 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=64.2
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCC-CCHHhHHHHHHH
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR-GDIENAKRVFGDILDR----GWV-PDATTYTVLMDG 264 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 264 (527)
.+..|...|++..|-+++.. +...|... |+++.|++.|++..+. +.+ .-..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 33456666666666555544 34455555 7888888888777643 211 113345667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-----HH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 265 YIKLGRLTDAVKVMDEMEDNGVEPN-----EV-TYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
+.+.|++++|.++|++........+ .. .+...+-++...||...|...+++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888765432211 11 2222333555567777777777776654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=56.97 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCC
Q 043284 384 DEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG---NAKEGIRILEEMLDKGC 460 (527)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 460 (527)
+.-....|.|...|-.|...|...|+++.|..-|.+..+. -.++...+..+..++..+. ...++..+|++++..+
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D- 223 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD- 223 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-
Confidence 3334456778999999999999999999999999988876 2345666777777665433 3567889999999854
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 461 FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
+-|......|...+...|++.+|...|+.|.+..+++. .|..++.
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 22556777888899999999999999999998887654 5555555
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.024 Score=50.86 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=116.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCH
Q 043284 90 RARAFDAVESLLTELKQNPEIKCGENLFITVIR--NYGLAGRPELAVKTFLRIEKFNVQRSVRS--LNTLLNALVQNKRY 165 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 165 (527)
..|+-..|+++-.+..+. +..|...+..++. +-.-.|+++.|.+-|+.|.. .|.... +..|.-...+.|..
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccH
Confidence 345555555555554432 1112222222222 22334666666666666653 122211 11222222345555
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC-CCCCHH--HHHHHHHHHH---hcCChHHH
Q 043284 166 DLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG-MVPNLV--THTTILGGYV---WRGDIENA 239 (527)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~---~~~~~~~a 239 (527)
+.|.+.-+..-.. -+.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -..+...|
T Consensus 171 eaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 5555555554433 12223445555555666666666666655443321 222221 1111111111 12234444
Q ss_pred HHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 240 KRVFGDILDRGWVPDATT-YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
...-.+..+. .||-.- -..-..++.+.|+..++-.+++.+-+....|+ .+.. ..+.+.|+. +..-++....
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 4444443332 333221 12223455566666666666666655532222 2211 112233332 2222222211
Q ss_pred -cCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHH
Q 043284 319 -RKYVP-SSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC-KEGKIWEAKKLFDEF 386 (527)
Q Consensus 319 -~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 386 (527)
...+| +......+.++....|++..|..--+...+. .|....|..+...-. ..|+-.++...+.+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 01122 2333334455555556665555555444433 334444444444432 236666666665555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.001 Score=54.64 Aligned_cols=63 Identities=10% Similarity=-0.136 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
..++..+...|++++|...|+.++...++......++..+...+...|++++|+..++++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444555555555555554333321112234444555555555555555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0023 Score=54.28 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...+...+..+...|++.+|++.|+.+....|. +........++.++.+.|+++.|...++++.+.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445666677777888888888888888876332 3344566677788888888888888888877653
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0015 Score=49.23 Aligned_cols=94 Identities=21% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP-NVFTCNILIKAL 195 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 195 (527)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++....+...+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344455555666666666665555553332 23444455555555666666666655554311100 111112222344
Q ss_pred HcCCChHHHHHHHHhcc
Q 043284 196 CKKDDVEGAIRVLDEMP 212 (527)
Q Consensus 196 ~~~~~~~~A~~~~~~~~ 212 (527)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 45555555555554433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00059 Score=49.33 Aligned_cols=72 Identities=18% Similarity=0.396 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGW-VPDATTYTVLMDGYIKLG--------RLTDAVKVMDEMEDNGVEPNEVTYGVMIEA 299 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (527)
.+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555555555555 455555555555444332 123344555555555555555555555554
Q ss_pred H
Q 043284 300 F 300 (527)
Q Consensus 300 ~ 300 (527)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 4
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.5e-05 Score=51.73 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQ 106 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 106 (527)
.+..++..+...|++++|+..|+++++.+|. +...|..+..++...| ++++|++.++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555566666666666655555542 4445555555555555 45555555555544
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00056 Score=49.44 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHCCCCCCHHhHH
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPSMGM-VPNLVTHTTILGGYVWRGD--------IENAKRVFGDILDRGWVPDATTYT 259 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 259 (527)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..- .-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888887 7888888888877665432 345667888888888888888888
Q ss_pred HHHHHHHh
Q 043284 260 VLMDGYIK 267 (527)
Q Consensus 260 ~l~~~~~~ 267 (527)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00078 Score=62.07 Aligned_cols=71 Identities=15% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 37 PWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
.+.++..+..++..|...|++++|+..|+++++.+|+......+|+.+..+|...|++++|+..++++.+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33455678899999999999999999999999888753222256999999999999999999999999884
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0021 Score=54.91 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 122 (527)
....+-.+...|++..|...|...++..|+..-.+.++.-|++++...|++++|...|..+.+..|..+. +..+..+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4566666778889999999999999999988888889999999999999999999999999887554443 367788888
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 888999999999999998876
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0004 Score=62.04 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILD----RGW-VPDATTYTVLMDGYIKLGRLTDAVKVMDEMED----NGV-EPNEV 291 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~ 291 (527)
.|..|.+.|.-.|+++.|+...+.-+. .|- ......+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666666777777765543221 121 11223556677777777788887777766432 221 11233
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQR-----KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLR 353 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (527)
....+.+.|.-..++++|+.++.+-+.. +..-....+..+..++...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666666667777777776654321 1122345666777777777777777766655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00035 Score=47.10 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=23.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 126 LAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
..|++++|++.|+++.... |.+..++..++.+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544443 23444444455555555555555555554443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=49.05 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=48.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
..+|.+++++++|+++++.+++..|. ++..+...+.++.+.|++++|.+.|+++.+..|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45678888888888888888877774 6778888888888888888888888888876553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=8e-05 Score=40.93 Aligned_cols=29 Identities=45% Similarity=0.662 Sum_probs=14.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSMG 215 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 215 (527)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.8e-05 Score=40.57 Aligned_cols=29 Identities=45% Similarity=1.020 Sum_probs=13.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.059 Score=49.45 Aligned_cols=125 Identities=13% Similarity=0.009 Sum_probs=84.9
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 61 LQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
+.+=+++ +.+| .|..+|..+++.+...+..++-+++++++... .+.-..+|..-+..-...+++.....+|.+.
T Consensus 29 lrLRerI-kdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 29 LRLRERI-KDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHh-hcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 3555555 4455 58899999999999999999999999999874 4446667877777777788999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHhhhcCCCCCC-hhhHHHHHH
Q 043284 141 EKFNVQRSVRSLNTLLNALVQNKRY------DLVHLMFKNSRHKFKVVPN-VFTCNILIK 193 (527)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 193 (527)
+... .+...|...+..--+.++. -...+.|+-...-.++.|- ...|+..+.
T Consensus 103 L~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~ 160 (660)
T COG5107 103 LKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGL 160 (660)
T ss_pred Hhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHH
Confidence 8864 4456666666544443311 1223444444443345553 334555444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00035 Score=47.29 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 043284 429 VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP-NKTSFSLLIEGLYESG-NEGEVGKVVSMATAS 493 (527)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 493 (527)
..+|..+...+...|++++|+..|+++++.+ | +...+..++.++.+.| ++++|++.++++.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455566666666666666666666666542 3 3345556666666666 466666666665543
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.064 Score=49.23 Aligned_cols=403 Identities=13% Similarity=0.097 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+..+|..|+.-+..+|.+++.+++++++... ++--+.+|...+..-...+++.....+|.+.+.. .. +...|..
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p---fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l--~ldLW~l 114 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP---FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SL--NLDLWML 114 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC---CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hc--cHhHHHH
Confidence 4567899999999999999999999999433 3344558888888888889999999999999874 22 5556665
Q ss_pred HHHHHHhcCC------hhHHHHHHHHHHh-cCCCC-CHHHHHHHHHHHH---hcCC------HHHHHHHHHHhhhcCCCC
Q 043284 120 VIRNYGLAGR------PELAVKTFLRIEK-FNVQR-SVRSLNTLLNALV---QNKR------YDLVHLMFKNSRHKFKVV 182 (527)
Q Consensus 120 l~~~~~~~g~------~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---~~g~------~~~a~~~~~~~~~~~~~~ 182 (527)
-+..-.+.+. -....+.|+-... .++.| ....|+..+..+- ..|. .|...+.+.++... .+.
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t-P~~ 193 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT-PMG 193 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 5554333321 1122333443332 23333 3445666555443 2343 44566666666643 111
Q ss_pred CChhhHHHHHHHHHc-------------CCChHHHHHHHHhccc--CCCC----CCHHHHHHH-----------HHHHHh
Q 043284 183 PNVFTCNILIKALCK-------------KDDVEGAIRVLDEMPS--MGMV----PNLVTHTTI-----------LGGYVW 232 (527)
Q Consensus 183 ~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~--~~~~----p~~~~~~~l-----------~~~~~~ 232 (527)
.-...|+-.-..-.. .--+-.|...++++.. .|.. .+..+++.+ |..-..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 112233322110000 0112344445544432 1211 122233322 111110
Q ss_pred c-----CC-h-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccC
Q 043284 233 R-----GD-I-ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGV-MIEAFCKGK 304 (527)
Q Consensus 233 ~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 304 (527)
. |+ . ...--++++.+.. +.-....|-.--..+...++-+.|+...+..... .|+ .+. +...|.-.+
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~n 347 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVN 347 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcc
Confidence 0 00 0 0111122222221 1223333333334445667778888776654432 233 122 222333334
Q ss_pred CHHHHHHHHHHHHHc--------------CCC---------------CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 043284 305 KSGEARNLLDDMLQR--------------KYV---------------PSSALCCKVIDLLCEEGKVEDACELWKRLLRKN 355 (527)
Q Consensus 305 ~~~~a~~~~~~~~~~--------------~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (527)
+.+.+...|++..+. +.. .-...|...+....+....+.|..+|-++.+.+
T Consensus 348 d~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred cHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 444444434332210 000 011223334444455555666666666666665
Q ss_pred -CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHH
Q 043284 356 -CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN--VFTY 432 (527)
Q Consensus 356 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~ 432 (527)
..+++.++++++..+ ..|+...|..+|+.-....+.+..--+..+.-+...++-+.|..+|+...+. +..+ ...|
T Consensus 428 ~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy 505 (660)
T COG5107 428 IVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIY 505 (660)
T ss_pred CCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHH
Confidence 345555556655543 3466666666666654444444444445555556666666666666654432 2222 3456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 433 NMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..++..-..-|+...+..+=++|.+
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6666666666666666655555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.057 Score=48.56 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=162.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH--HHcCCChHHHHHHHHhcccCCCCCCHHHH--HHHHHHHHhcCChH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA--LCKKDDVEGAIRVLDEMPSMGMVPNLVTH--TTILGGYVWRGDIE 237 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~ 237 (527)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |..... ..|.-..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 46666777666655432 22344444444433 33468888888888888862 333221 22222334678888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---ccCCHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG-VEPNEV--TYGVMIEAFC---KGKKSGEARN 311 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~ 311 (527)
.|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8887777766552 2235667777888888888888888887655432 233331 1112222111 1233445555
Q ss_pred HHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH---h
Q 043284 312 LLDDMLQRKYVPSSA-LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF---E 387 (527)
Q Consensus 312 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~ 387 (527)
.-.+..+ ..|+.. .-.....++.+.|+..++-.+++.+-+..+.|+.. .+..+.+.|+ .+..-+++. .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 4444443 233321 22334567788888888888888888775554422 1222333443 333333333 3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHC
Q 043284 388 RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF-CKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 458 (527)
...+.+..+...+..+-...|++..|..--+..... .|....|..|.+.- ...||-.++..++.+.+..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 334456667777777777788888777766666543 67777777777655 3458888888888877754
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00052 Score=45.76 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 402 AGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 402 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+...|++++|...|+++.+.. +-+...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555444431 11233444444444445555555555544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.067 Score=48.56 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 441 (527)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++-.. .-++.-|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 44555667788899999988887773 37889999999999999999988776532 2245778999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHHhchhhhH-HHHH
Q 043284 442 IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIVSDLDSGA-GALD 520 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~-~~~~ 520 (527)
.|...+|..+..+ ++ + ..-+..|.+.|++.+|.+.--+. .|...+..+...+.++-+... ...+
T Consensus 250 ~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~~-----kd~~~L~~i~~~~~~~~~~~~~~~i~ 314 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFKE-----KDIDLLKQILKRCPGNNDQLIADKIE 314 (319)
T ss_pred CCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHHc-----CCHHHHHHHHHHCCCCChHHHHHHHH
Confidence 9999999998887 22 2 33456789999999998765542 477778888777766544433 3344
Q ss_pred HH
Q 043284 521 EL 522 (527)
Q Consensus 521 ~~ 522 (527)
.+
T Consensus 315 ~~ 316 (319)
T PF04840_consen 315 QM 316 (319)
T ss_pred HH
Confidence 43
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.094 Score=50.15 Aligned_cols=385 Identities=12% Similarity=0.094 Sum_probs=206.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++.--....+.+.++.+++.++..-| --..-|......-.+.|..+.+.++|++..+. ++.+...|......
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyP---l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYP---LCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAF 122 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCc---cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence 33444433344555777778888864443 22335666666777888888999999888874 44466666655443
Q ss_pred H-HhcCChhHHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH---c
Q 043284 124 Y-GLAGRPELAVKTFLRIEKF-NVQ-RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC---K 197 (527)
Q Consensus 124 ~-~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 197 (527)
+ ...|+.+.....|+..+.. |.. .....|...+..-..++++.....++++..+. | ...++..-..|. +
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHHh
Confidence 3 3557788888888888765 211 33556777787778888888888888888754 1 111211111111 1
Q ss_pred C------CChHHHHHHHHhccc--------------------CCCCCCH--HHHHHHHH-------HHHhcCChHHHHHH
Q 043284 198 K------DDVEGAIRVLDEMPS--------------------MGMVPNL--VTHTTILG-------GYVWRGDIENAKRV 242 (527)
Q Consensus 198 ~------~~~~~A~~~~~~~~~--------------------~~~~p~~--~~~~~l~~-------~~~~~~~~~~a~~~ 242 (527)
. ...+++.++-..... .+-+.+. ...+.+-. .+-.........-.
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 122322222211110 0000000 01111111 11111222222223
Q ss_pred HHHHHHCC---C----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 243 FGDILDRG---W----VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 243 ~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
++.-++.- + .++..+|...+..-.+.|+++.+.-+|++..-- +..=...|-..+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33322221 1 224566777778888888988888888887531 011123444444444555888888777776
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHH---HHHHHHhcCCC
Q 043284 316 MLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN-AISSTIIHWLCKEGKIWEAK---KLFDEFERGSI 391 (527)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~ 391 (527)
..+--.+..+.+-..-....-..|++..|..+++.+...- |.. ..-..-+....+.|+.+.+. .++.....+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~- 433 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK- 433 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-
Confidence 6654333233322222333445678888988888887753 332 22223344556677777777 3333332221
Q ss_pred CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 043284 392 PSLLTYNTLIA-----GMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG 443 (527)
Q Consensus 392 ~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 443 (527)
.+......+.. .+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 12222222222 223357788888888888875 4556667777777665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.041 Score=46.84 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE 114 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 114 (527)
+..-+....+.|++++|...|+.+...+|..+-...+...++.++.+.++++.|+..+++.....|..++.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 44556666678888888888888887777777777777888888888888888888888888876665554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=59.58 Aligned_cols=271 Identities=13% Similarity=0.030 Sum_probs=167.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh--C-CCCCc-ChhhHHHHHH
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNF-SHNYDTYHSIIHKLARARAFDAVESLLTELKQ--N-PEIKC-GENLFITVIR 122 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~-~~~~~~~l~~ 122 (527)
+.-+++.|+.+.-+.+|+.+++..... ..-..+|..+..+|...+++++|++....=+. + -+... ....-..+..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 456789999999999999998664421 11244678888888899999999887642111 0 01110 1223334555
Q ss_pred HHHhcCChhHHHHHHHHHH----hcCC-CCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhhh
Q 043284 123 NYGLAGRPELAVKTFLRIE----KFNV-QRSVRSLNTLLNALVQNKR--------------------YDLVHLMFKNSRH 177 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~ 177 (527)
.+--.|.+++|+....+-+ +.|- .....++..+...|...|+ ++.|.++|..-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6666788888876543332 2221 1234456667777766543 1233344332111
Q ss_pred ---cCCC-CCChhhHHHHHHHHHcCCChHHHHHHHHhcc----cCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 178 ---KFKV-VPNVFTCNILIKALCKKDDVEGAIRVLDEMP----SMGMV-PNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 178 ---~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
..|. -.--..|..|.+.|.-.|+++.|+...+.-+ +-|-. .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1010 0112345666666667889999987765432 22311 2235678888999999999999998876543
Q ss_pred ----CCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 249 ----RGW-VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----G-VEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 249 ----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
.|- .....+...|.+.|.-..+++.|+.++.+-... + ..-....+..+..++...|..++|+.+.+.-++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 223445666788888888999999888764321 1 112456788899999999999999987776554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=52.91 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=31.1
Q ss_pred ChhhHHHHHHHHHc-----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 043284 184 NVFTCNILIKALCK-----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYV 231 (527)
Q Consensus 184 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 231 (527)
+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 45555555555543 3566666667777777777777777777776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=47.01 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|++++|+++|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444331 11333333444444444444444444444443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0039 Score=54.71 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV----FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN----KTSF 467 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 467 (527)
.|......+.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+++.- |+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHH
Confidence 3444444445668888888888888876 3442 466778888888888888888888888642 33 3456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 468 SLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
..++.++...|+.++|.++++.+.+..|..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 666777888888888888888887776543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.056 Score=45.84 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=89.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHH-----HH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISS-----TI 366 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 366 (527)
..+.++..+...+.+.-...+++++.+.+.+.++.....+++...+.||.+.|...|++..+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445566666677777777777777776666677777777777777888888888887666543232322222 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTY 432 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 432 (527)
...|.-.+++..|...++++...++.++..-|.-+-+..-.|+..+|++.++.|.+. .|...+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 334455667777777777776656666666666555566667777788887777765 4444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0054 Score=47.15 Aligned_cols=82 Identities=5% Similarity=-0.048 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..-+....+.|++++|++.|+.+....|..+-...+-..++.++.+.+++++|...+++..+..|..++. .|...+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHH
Confidence 3445566777788888888888888877777766677778888888888888888888888888876665543 233333
Q ss_pred HHH
Q 043284 122 RNY 124 (527)
Q Consensus 122 ~~~ 124 (527)
.++
T Consensus 90 ~gL 92 (142)
T PF13512_consen 90 RGL 92 (142)
T ss_pred HHH
Confidence 433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.2 Score=49.20 Aligned_cols=348 Identities=11% Similarity=0.100 Sum_probs=179.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRY---DLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
++.-+...+.+..|+++-..+-..-... ..+|.....-+.+..+. +-+..+-+++... .. ....|....+-..
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~-~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LT-PGISYAAIARRAY 518 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CC-CceeHHHHHHHHH
Confidence 3444555667777777766654321111 44555555555554321 1222222222211 12 3345666666666
Q ss_pred cCCChHHHHHHHHhcccCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 197 KKDDVEGAIRVLDEMPSMGMV----PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
..|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+...- +... .+....+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhch
Confidence 777777777766542222100 111123333444445555555555544444320 1111 111223455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHH----cCCCCCHHhHHHHHHHHHhcCCHhHH---
Q 043284 273 DAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNL-LDDMLQ----RKYVPSSALCCKVIDLLCEEGKVEDA--- 344 (527)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a--- 344 (527)
.|..+|.+..+.. |.. .+-..|.+..+...+-.+ ++.... .+..|+ ......++.+.....-.
T Consensus 590 ~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence 5666666655431 111 111222222222222111 111111 122222 22344445444332211
Q ss_pred -------HHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 345 -------CELWKRLLR-KNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 345 -------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
+++.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+- ||...|-.-+.+++..+++++-.++
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---pdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---PDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---cchhhHHHHHHHHHhhhhHHHHHHH
Confidence 122222221 12222333445556667788999999998888743 7888888888999999999987777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
-+.+. .+.-|..++.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.+.--+- .
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~~-----r 797 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAEH-----R 797 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHHh-----c
Confidence 65543 245677788999999999999998876432 11 5667899999999998765542 3
Q ss_pred ChhhHHHHHHHHHhch
Q 043284 497 ESDSWNFLLTRIVSDL 512 (527)
Q Consensus 497 ~~~~~~~ll~~~~~~~ 512 (527)
|......++..+.++.
T Consensus 798 d~~~L~ev~~~~~~~~ 813 (829)
T KOG2280|consen 798 DGAELSEVLSKCTGAP 813 (829)
T ss_pred ChHHHHHHHHhcCCCC
Confidence 4445666666555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.14 Score=47.23 Aligned_cols=377 Identities=14% Similarity=0.116 Sum_probs=202.5
Q ss_pred HHHHHHH--HHHhcCCchHHHHHHHHhhhC--C--CCCcChhh--------H-HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 80 TYHSIIH--KLARARAFDAVESLLTELKQN--P--EIKCGENL--------F-ITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 80 ~~~~l~~--~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~~~--------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.|..+.. .+.+.+++.+|.+.+....+. . +.-.+..+ + ...+.+++..|++.+++.+++++...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3444443 345889999999999887765 1 11111111 1 234667789999999999999887653
Q ss_pred ----CCCCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHhhhcC-----CCCCChhhHHHHHHHHHcC--
Q 043284 145 ----VQRSVRSLNTLLNALVQNKR---------------YDLVHLMFKNSRHKF-----KVVPNVFTCNILIKALCKK-- 198 (527)
Q Consensus 145 ----~~~~~~~~~~l~~~~~~~g~---------------~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~-- 198 (527)
...+..+|+.++-.+.+.=- ++.+.-..+++.... .+.|.......++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 34788899987777665211 112222222222110 0112222222222221111
Q ss_pred CChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCChhH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLV-THTTILGGYVWRGDIENAKRVFGDILDRGWVP----DATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 273 (527)
.+..--.+++......-+.|+-. ....+...+.. +.+++..+.+.+....+.+ =..++..++....+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11111222233222233344433 23334444433 6677777776666543211 24567788888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-------HHHHH-ccCC---HHHHHHHHHHHHHcCCCCCHHhHHHH---HHHHHhcC
Q 043284 274 AVKVMDEMEDNGVEPNEVTYGVM-------IEAFC-KGKK---SGEARNLLDDMLQRKYVPSSALCCKV---IDLLCEEG 339 (527)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~ 339 (527)
|...+.-+... .|+...-..+ -+..+ ...+ ...=+.+++.+...++. .......+ ..-+-+.|
T Consensus 317 a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 317 AKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcC
Confidence 99988877765 3443322222 12222 1111 12223344444443222 11122222 23334455
Q ss_pred C-HhHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHHc---CCHHHHHHHHHHH-hcCCCC----CHHHHHHHHHH--H
Q 043284 340 K-VEDACELWKRLLRKNCMPDNAISSTII----HWLCKE---GKIWEAKKLFDEF-ERGSIP----SLLTYNTLIAG--M 404 (527)
Q Consensus 340 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~~a~~~~~~~-~~~~~~----~~~~~~~l~~~--~ 404 (527)
. -++|+.+++.+.+-. .-|...-+.+. ..|.+. ..+.+-..+-+-+ ..+.+| +...-|.+..+ +
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 5 788999998887753 23443333322 223222 2233333332333 233333 44455666554 4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSL 469 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 469 (527)
...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 568999999876666653 589999999999999999999999999987 5677666553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.088 Score=44.91 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+..+..-+....+.|++++|.+.|+.+..+.|. +....+...++-++-+.+++++|+..+++....-.......|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3445566666677889999999999999988444 345667778888999999999999999999887544344455555
Q ss_pred HHHHHhc-------CCH---HHHHHHHHHhhhcCC---CCCChhh-----------H-HHHHHHHHcCCChHHHHHHHHh
Q 043284 156 LNALVQN-------KRY---DLVHLMFKNSRHKFK---VVPNVFT-----------C-NILIKALCKKDDVEGAIRVLDE 210 (527)
Q Consensus 156 ~~~~~~~-------g~~---~~a~~~~~~~~~~~~---~~~~~~~-----------~-~~l~~~~~~~~~~~~A~~~~~~ 210 (527)
|.+++.. .+. ..|..-|+.++.++. ..||... + ..+.+.|.+.|.+..|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6555542 233 355566666665521 1122211 1 2467889999999999999999
Q ss_pred cccCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 211 MPSMGMVPN---LVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 211 ~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
|++.- +-+ ...+-.+..+|...|-.++|...-.-+...
T Consensus 193 v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 193 VLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99862 212 235667788999999999999886666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=46.74 Aligned_cols=87 Identities=8% Similarity=-0.009 Sum_probs=38.7
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL 167 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (527)
+...|++++|..+|+-+.-.++. +...|..|..++-..+++++|+..|......+ ..|+..+.....++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 33444455555544444433222 33334444444444444555555444444333 2333334444444444455555
Q ss_pred HHHHHHHhhh
Q 043284 168 VHLMFKNSRH 177 (527)
Q Consensus 168 a~~~~~~~~~ 177 (527)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 5544444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=46.34 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (527)
+..+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++..++... .-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455566555555554443 34555666666666666666655543321 11234455555666666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
|...+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6666665555541 1 12344555556665555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.22 Score=47.83 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...|..++..-....+.+.++..+..++...|. -.-.|...+..-.+.|..+.+.++|++.+. +++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3446666665544445557777788877764443 334566666666788999999999999987 4677777777666
Q ss_pred HHHH-hcCCHHHHHHHHHHhhhcCCCC-CChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 157 NALV-QNKRYDLVHLMFKNSRHKFKVV-PNVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 157 ~~~~-~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
..+. ..|+.+.....|+....-.|.. -....|...|..-..++++.....++++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5444 4678888889999887664432 23456788888778889999999999998874
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=45.03 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
++..+..-+....+.|++++|++.|+.+..+.|. +....+...++.+|.+.|++++|+..+++..+.........|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4556666677777899999999999999988443 345667888999999999999999999999998644333445555
Q ss_pred HHHHHhcC
Q 043284 156 LNALVQNK 163 (527)
Q Consensus 156 ~~~~~~~g 163 (527)
+.+++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 55554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=46.81 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=70.0
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcC
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAG 128 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 128 (527)
......|+.+.+...++.++..-.|........ ..-.......++... ......++..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLRELY--------LDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcc
Confidence 344567889999999988876654432111000 011111122222221 224556677777888
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hcCCCCCChhhH
Q 043284 129 RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSR----HKFKVVPNVFTC 188 (527)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~ 188 (527)
++++|+.+.+.+.... |.+...|..+|.+|...|+...|.+.|+.+. +..|+.|+..+-
T Consensus 77 ~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 77 DYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888888888888776 5677788888888888888888888887754 344777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.042 Score=43.47 Aligned_cols=87 Identities=13% Similarity=-0.037 Sum_probs=51.2
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (527)
+...|++++|..+|.-+..-.+-+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 44566666666666666444445555566666666666666666666665554332 23333444556666666666666
Q ss_pred HHHHHHHH
Q 043284 450 RILEEMLD 457 (527)
Q Consensus 450 ~~~~~~~~ 457 (527)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666655
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.01 Score=48.93 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CCHHHHHHH
Q 043284 393 SLLTYNTLIAGMCE-----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI----------------GNAKEGIRI 451 (527)
Q Consensus 393 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~ 451 (527)
+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445555554443 244555555556666666666666666666654321 134557778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043284 452 LEEMLDKGCFPNKTSFSLLIEGLYESG 478 (527)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 478 (527)
+++|...|+.||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 888888888888888888877775554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.13 Score=43.72 Aligned_cols=177 Identities=13% Similarity=0.102 Sum_probs=98.6
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
..|.+.+.+.-+..+.. ....++.........+..+++|++=.. .+...++..+.-.|.+.-
T Consensus 134 ~lgnpqesLdRl~~L~~----------~V~~ii~~~e~~~~~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~i 195 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKT----------VVSKILANLEQGLAEESSIRLWRKRLG--------RVMYSMANCLLGMKEYVL 195 (366)
T ss_pred hcCCcHHHHHHHHHHHH----------HHHHHHHHHHhccchhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhh
Confidence 34666666555554411 223333333333333555555554332 244456666666777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH-----HHHHHHcCCChHHHHHH
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI-----LIKALCKKDDVEGAIRV 207 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~ 207 (527)
.+.++.+..+...+.++.....+++.-.+.|+.+.|...|+++.+..+ .-+..+++. ....|.-.+++..|...
T Consensus 196 S~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 196 SVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 788888887776666777777777777788888888888876654322 122222222 22334445566666666
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 208 LDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
+++....+. .|....|.-.-+..-.|+...|.+.++.|+..
T Consensus 275 ~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 275 FTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666655431 23333333333444456666666666666655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=53.66 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
+.-+..+++.|++..|...|++++..-....+. +.++.. ....+ -...++.++.++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~---------------~~ee~~-~~~~~--------k~~~~lNlA~c~ 267 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF---------------DEEEQK-KAEAL--------KLACHLNLAACY 267 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccC---------------CHHHHH-HHHHH--------HHHHhhHHHHHH
Confidence 445667888999999999998875332211110 001111 11111 122455566666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHcCCCh-H
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT-CNILIKALCKKDDV-E 202 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~-~ 202 (527)
.+.+++..|++..++.+..+ +.|+.....-..++...|+++.|+..|+++.+. .|+... -+.++..-.+.... +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665 556666666666666666666666666666653 343333 33333333333332 2
Q ss_pred HHHHHHHhccc
Q 043284 203 GAIRVLDEMPS 213 (527)
Q Consensus 203 ~A~~~~~~~~~ 213 (527)
...++|..|..
T Consensus 344 kekk~y~~mF~ 354 (397)
T KOG0543|consen 344 KEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhh
Confidence 33555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.19 Score=46.12 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhcCCCCCChh
Q 043284 113 GENLFITVIRNYGLAGRPELAVKTFLRIEKFN---VQRSVRSLNTLLNALVQ---NKRYDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 113 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
+..+...++-+|....+++..+++.+.+...- +..+..+-...+-++.+ .|+.++|++++..+... ...+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChH
Confidence 44455566666777777888888777776641 12233333345555666 67777777777774333 2345666
Q ss_pred hHHHHHHHHHc---------CCChHHHHHHHHhccc
Q 043284 187 TCNILIKALCK---------KDDVEGAIRVLDEMPS 213 (527)
Q Consensus 187 ~~~~l~~~~~~---------~~~~~~A~~~~~~~~~ 213 (527)
+|..+.+.|-. ....++|++.|.+.-+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66666665432 1124555666555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.15 Score=47.82 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC-HHHHHHHHHH
Q 043284 151 SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN-LVTHTTILGG 229 (527)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 229 (527)
+-..+..++-+.|+.++|++.|+++.+......+......|+.++...+.+.++..++.+..+...+.+ ..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677788899999999888876533222344667788888888999998888888755432222 3456655443
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.18 Score=46.29 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=46.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRK---YVPSSALCCKVIDLLCE---EGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
...++-+|-...+++..+++.+.+.... +.-....-...+.++.+ .|+.++|++++..+......+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776541 11122222334445555 67777777777775555556666777666
Q ss_pred HHHH
Q 043284 367 IHWL 370 (527)
Q Consensus 367 ~~~~ 370 (527)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6655
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.087 Score=44.24 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhc
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAG 68 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 68 (527)
..|..-+..|...+++++|...+..+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345666666777788888888877774
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0062 Score=41.61 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 403 GMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
.|.+.+++++|.++++++...+ +.+...|.....++...|++++|.+.|++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444555555554444431 11233334444444444555555555554444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.04 Score=48.43 Aligned_cols=154 Identities=7% Similarity=-0.142 Sum_probs=79.5
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHhcCC
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF-N--VQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~ 164 (527)
....|++.+|-..++++++..|. +-..+...=.+|.-.|+...-...++++... + +|-.........-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34456666666666666664332 4444555555666666666666666666543 2 11112222233344455666
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN---LVTHTTILGGYVWRGDIENAKR 241 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~ 241 (527)
+++|++.-++..+. -+.|...-.++...+--.|++.++.+...+-...--..+ ...|=...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 66666666665543 122455555566666666666666666554332210001 1122223334455567777777
Q ss_pred HHHH
Q 043284 242 VFGD 245 (527)
Q Consensus 242 ~~~~ 245 (527)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 7764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=44.86 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccC---CCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFH---PNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
.+..++.++...|++++|+..|+++++.. +...+. ..++..++.++...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678888888888888888888887441 111111 44667777777777777777777777654
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0029 Score=43.97 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIE 141 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 141 (527)
.++..+...+...|++++|++.|+++.+. ++..+. ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666666543 111111 2344455555556666666666655544
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.032 Score=47.92 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh-hhHHHH
Q 043284 115 NLFITVIRNYGLAGRPELAVKTFLRIEKFNV--QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV-FTCNIL 191 (527)
Q Consensus 115 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 191 (527)
..|...+. +.+.|++..|.+.|...++... .-...++..|..++...|+++.|...|..+.+.++-.|.. ..+-.|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 34444443 3355666666666666665421 1224455566666666666666666666666654444432 455556
Q ss_pred HHHHHcCCChHHHHHHHHhcccC
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.14 Score=43.02 Aligned_cols=213 Identities=11% Similarity=0.097 Sum_probs=112.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 72 PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
|+...-...|..-..+|...+++++|...+.++.+-.. .+...| .... .++.|.-+.+++.+. +.-+..
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslf-hAAK------ayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLF-HAAK------AYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHH-HHHH------HHHHHHHHHHHHHHh--HHHHHH
Confidence 44444456677778888888999999988888775211 122222 2233 345666666666653 233445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC---C--CCCCHHHHHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM---G--MVPNLVTHTTI 226 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~p~~~~~~~l 226 (527)
+......|..+|..+.|-..+++.-+. .+..++++|+++|++.... + ...-...+...
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 666677788888887777666654321 1223344444444433211 0 00011223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHH
Q 043284 227 LGGYVWRGDIENAKRVFGDILDR----GWVPD-ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV---EPNEVTYGVMIE 298 (527)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 298 (527)
.+.+.+...+++|-..+.+-... .--++ -..|...+-.+.-..|+..|.+.++.-.+.+- +-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 44555555565555444332111 00111 12244445555666788888888877443321 224566666776
Q ss_pred HHHccCCHHHHHHHH
Q 043284 299 AFCKGKKSGEARNLL 313 (527)
Q Consensus 299 ~~~~~~~~~~a~~~~ 313 (527)
+| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 66 356666665554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.89 Score=51.16 Aligned_cols=153 Identities=11% Similarity=0.023 Sum_probs=79.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGM--VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
.+..+-.+.+.+.+|+..++.-..... ......|-.+...|...++++...-+...-.. +...+ ..+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455567777777777777311100 01222344444577777777777666553111 22222 23334556
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (527)
.|++..|...|+.+.+.+ ++...+++-++......|.++.++...+........-....++.-..+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 778888888888877663 2235566666666666666666665544443321111111222223333455555555554
Q ss_pred HH
Q 043284 348 WK 349 (527)
Q Consensus 348 ~~ 349 (527)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.024 Score=42.26 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc--ChhhHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC--GENLFITVIR 122 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 122 (527)
..-+-++...|+.+.|++.|.+++..-| .+..+|+.-..++.-.|+.++|++-++++.+..+... ....|..-..
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P---~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAP---ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcc---cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3445566677888888888888876665 4667888888888888888888888888877633321 1234555556
Q ss_pred HHHhcCChhHHHHHHHHHHhcC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.|...|+.+.|..-|+..-+.|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhC
Confidence 6677788888888887777665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.01 Score=47.38 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML-----DKGCFPNKTS 466 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 466 (527)
..++..+...|++++|..+++++.... +-|...|..+|.++...|+..+|.+.|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444444555555555555554431 2234445555555555555555555554443 2345554443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.18 Score=41.59 Aligned_cols=180 Identities=15% Similarity=0.032 Sum_probs=87.1
Q ss_pred chHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043284 94 FDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFK 173 (527)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (527)
+.-|+--|.+.....|. -+.+|+.+...+...|+++.|.+.|+...+.+..-+ .+...-.-.+.--|+++-|.+-|.
T Consensus 81 ~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence 34444444444444333 345677777777777777777777777777652222 222222223334577777776665
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH-HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-
Q 043284 174 NSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL-DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW- 251 (527)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 251 (527)
..-....-.|--..|--+.. ..-++.+|..-+ ++..+ .|..-|...+-.|.- |.+. ...+++++.....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc
Confidence 55543111221222222221 223445554433 33332 233333332222211 1111 0112222221110
Q ss_pred -----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 252 -----VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 252 -----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
..=+.||-.+..-+...|+.++|..+|+-....+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0124677778888888888888888888777653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.045 Score=49.67 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=38.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
++.+.-++.+.+++..|++..++.++.+ ++|...+..=+.++...|+++.|+..|+++.+..|.+..+-..++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4445555555555666655555555543 234444444555555556666666666665555554444433333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.69 Score=45.69 Aligned_cols=334 Identities=15% Similarity=0.130 Sum_probs=185.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 84 IIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR--PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
++.-+...+.+..|+++-+.+... ...+..+|......+.+..+ -+++++..++=.+.. -.....|..+..-...
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCc--cccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 355556678888888888877542 22235678888887777642 233333333333221 1344567788888888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH
Q 043284 162 NKRYDLVHLMFKNSRHKFKVVP---NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
.|+++-|..+++.-.......| +..-+...+.-+.+.|+.+-...++-.+... .+...+.. ...+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~------~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFM------TLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHH------HHHhchh
Confidence 9999999998865432211111 1122333344455555555555555544432 11222221 1234455
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH--HHHHC-CCCCCHHHHHHHHHHHHccCCHH---HH---
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD--EMEDN-GVEPNEVTYGVMIEAFCKGKKSG---EA--- 309 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~---~a--- 309 (527)
|..+|.+..+.. +..+ +-+.| ..++-.++...|. ..... .+.+-..........+.+..... +|
T Consensus 591 a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhh---chhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 666666665531 1111 11122 2222222222221 10000 01111222233334444433311 11
Q ss_pred ----HHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 043284 310 ----RNLLDDMLQ-RKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFD 384 (527)
Q Consensus 310 ----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (527)
+++.+.+.. .+.....-+.+..+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 222222222 2222333445556677788899999988876653 5688888888999999999988777665
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 385 EFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
..+ .+.-|.-.+.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.++--+
T Consensus 740 skk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhccHHHHHHHHHH
Confidence 543 3566888899999999999999998766422 1 466788899999988876544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.2 Score=48.37 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH----------
Q 043284 325 SALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL---------- 394 (527)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 394 (527)
..+...+...+.+...+..|-++|.++-.. ..+++.....++|.+|..+-++..+-. +|+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~-~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK-DDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc-ccccchHHHHhhh
Confidence 344444455555566677777777766321 356677777888888888777763322 121
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 395 -LTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 395 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.-+...-.+|.+.|+-.+|.++++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11333445677778888888888877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.13 Score=47.99 Aligned_cols=148 Identities=9% Similarity=0.072 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHhc---ccCCCCCCCHHHHHHHHHHHHh---------cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 56 NLDLALQIFHYAG---KFHPNFSHNYDTYHSIIHKLAR---------ARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 56 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
..+.|..+|++++ ..+|+ ...+|..+..++.. ..+..+|.++.+++.+.++. |......+..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~--Da~a~~~~g~~ 347 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV--DGKILAIMGLI 347 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 5678889999998 55553 34455544443332 12334566666666665444 55666666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
....|+++.|..+|++....+ |....+|......+.-.|+.++|.+.+++.................++.|+.. ..+.
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhh
Confidence 666777777777887777765 44455666666666667777777777777554311111122222233344333 3555
Q ss_pred HHHHHHh
Q 043284 204 AIRVLDE 210 (527)
Q Consensus 204 A~~~~~~ 210 (527)
|+.++-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 5555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.098 Score=49.88 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 87 KLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (527)
...-.++++++.++.+.-.-.+.+ .......++..+-+.|-.+.|+++.+.-. .-.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344556677766655411111112 23445666777777777777776653321 2234556677777
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
.|.++.++. ++...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+..
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777655333 2556777777777777777777777776543 345555666777777766666666
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
...| -++....++.-.|+.++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 234444555556777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0052 Score=36.90 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
++..++.+|.+.|++++|+++++++.+..|.+...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4667778888888888888888888888877777776653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.49 Score=42.43 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHhcCChhHHHHHHHHhcccCCCCCCCH-----HHHHHHHHHHHhcC-CchHHHHHHHHhhhC----C---CCCcC----
Q 043284 51 IFRQQNLDLALQIFHYAGKFHPNFSHNY-----DTYHSIIHKLARAR-AFDAVESLLTELKQN----P---EIKCG---- 113 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~----~---~~~~~---- 113 (527)
..++|+++.|..++.++-...+...|+. ..+..++......+ +++.|..++++..+. . ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3578999999999999843332222221 12344444445566 788887777766543 1 11111
Q ss_pred -hhhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 114 -ENLFITVIRNYGLAGRPE---LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 114 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..++..++.++...+..+ +|.++++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 122334445555444433 344444444332 1223444444455555556666666666666554
|
It is also involved in sporulation []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.34 Score=46.85 Aligned_cols=251 Identities=17% Similarity=0.206 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHH---------HhcccCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC
Q 043284 185 VFTCNILIKALCKKDDVEGAIRVL---------DEMPSMGMVPNLVTHTTILGGYVWRGDIE--NAKRVFGDILDRGWVP 253 (527)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~A~~~~---------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~ 253 (527)
...+.+-+..|...|.+++|.++- +.+... ..+.-.++..-.+|.+-.+.. +..--+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334455555677788887776541 111100 012223344444555544432 3333445666677666
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHH-----HHHHHHccCCHHHHHHHHHHHHH--cCCCCCH
Q 043284 254 DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTYGV-----MIEAFCKGKKSGEARNLLDDMLQ--RKYVPSS 325 (527)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 325 (527)
+... +...++-.|.+.+|-++|.+- |... -...|+- ...-+...|..++-..+.++-.+ .++...
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 6543 445666778888888887653 2110 0011111 12223333333333333332211 111111
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHH------HHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHH
Q 043284 326 ALCCKVIDLLCEEGKVEDACELWKR------LLR---KNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLT 396 (527)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~------~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (527)
....+.+...|+.++|..+.-+ +.+ +-...+..+...+...+.+...+.-|.++|.++-.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 1223444555665555543211 111 10122344455555556666777778888877722
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF-----------TYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
...+++.....+++++|..+-++.-+. .||.. -|...-++|.+.|+..+|..+++++..
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123556667778888888777766543 33432 133444567777777777777777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.21 Score=43.57 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=94.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
.......|++.+|..+|..+.+..+. +..+...++.+|...|+++.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 34456778888888888888876443 4556777888888888888888888887654211222222234555555555
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCChHH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM--GMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
..+...+-.++-.. +.|...-..+...+...|+.+.|++.+-.+.+. |. -|...-..++..+...|.-+.
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCH
Confidence 55555555554432 226666677778888888888888877766654 32 245556666766666664333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0046 Score=37.10 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSII 85 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (527)
+..++..|.+.|++++|+++|+++++..|+ |+..+..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 455667777777777777777777666663 555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.065 Score=49.90 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=53.1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL---LTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.+...++.+..+|...|++++|...|++.....+.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566778888888889999999999988866555555 35888888999999999999999888875
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.2 Score=44.85 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043284 434 MLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
-++..+.+..+.+.++.+.+..-+. ++..|..++..+.+.+..+.-.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 3455566666777777666654432 6677888888888877544433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.25 Score=47.93 Aligned_cols=118 Identities=17% Similarity=0.064 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKG--V-EPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
.+.+.|.++++.+....|......-.-.+.+...|++++|++.|++..... . ......+--+...+.-.++|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 455666677776655444444444444555566677777777777554310 0 1122344455566666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-HHHHhcCCh-------hHHHHHHHHHHh
Q 043284 451 ILEEMLDKGCFPNKTSFSLLI-EGLYESGNE-------GEVGKVVSMATA 492 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 492 (527)
.|.++.+.. ..+..+|..+. .++...|+. ++|.+++.++..
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777542 22333343332 233455666 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.11 Score=46.34 Aligned_cols=235 Identities=9% Similarity=0.072 Sum_probs=139.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHH----HHhhhCCCCCcChhhHHHHHH
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLL----TELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~l~~ 122 (527)
-+..+..+.+.++|+..+.+.+..-.+......++..+..+..+.|.+++++..- +.+.+.......-..|..+.+
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788889988888776443332333446677777888888887765432 222221111112345666777
Q ss_pred HHHhcCChhHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC----CChhhHHHHHHH
Q 043284 123 NYGLAGRPELAVKTFLRIEKF-NVQR---SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVV----PNVFTCNILIKA 194 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~ 194 (527)
++-+.-++.+++.+-..-... |..+ .-.....+..++.-.+.++++++.|+.....-.-. .....+..|...
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 776666777777776665543 2111 12344556677777888899988888765431111 123467888888
Q ss_pred HHcCCChHHHHHHHHhcccC----CCCCCHH-HHH-----HHHHHHHhcCChHHHHHHHHHHHH----CCCC-CCHHhHH
Q 043284 195 LCKKDDVEGAIRVLDEMPSM----GMVPNLV-THT-----TILGGYVWRGDIENAKRVFGDILD----RGWV-PDATTYT 259 (527)
Q Consensus 195 ~~~~~~~~~A~~~~~~~~~~----~~~p~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~ 259 (527)
|.+..++++|.-+..+..+. ++. |.. .|. .+.-++...|....|.+.-++..+ .|-. ....+..
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 88888888887666554331 221 221 122 233355667777777776666543 3311 1233445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
.+.+.|...|+.+.|..-|++..
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 67788888888888887777654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.065 Score=40.93 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 043284 145 VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA 194 (527)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (527)
..|+..+..+++.+|+..|++..|.++.+.....++++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566666666666666666666666666666666655555666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.094 Score=40.07 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 043284 391 IPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK-GVEPNVFTYNMLIQG 438 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 438 (527)
.|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 366777777777777777777777777766653 566566667666653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.32 Score=36.68 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=82.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+.-.|..++..++..+... +.+..-++.++--....-+-+-..+.++.+-+.+++. ..|+...
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 3456888888888888876 3455666677666666666667777777766554332 2344444
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
....+-.+-. +.......+.....+|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-+
T Consensus 75 Vi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 75 VIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444433322 34455566667777788787778877776533 56777777778888888888888888888777
Q ss_pred CCC
Q 043284 284 NGV 286 (527)
Q Consensus 284 ~~~ 286 (527)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.42 Score=46.42 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh-----hhHHHHHHHHHc----CCChHH
Q 043284 133 AVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV-----FTCNILIKALCK----KDDVEG 203 (527)
Q Consensus 133 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~~~~~ 203 (527)
..-+|.-+... +||. +..++....-.|+-+..++++....+..++.-.. ..|+..+..++. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 44455555543 2333 3456666666777777777777765543333211 123444433332 446677
Q ss_pred HHHHHHhcccCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTI-LGGYVWRGDIENAKRVFGDILDRG--W-VPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
|.++++.+.+. -|+...|... .+.+...|+.++|++.|+...... . ......+--++-++.-.+++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888887775 3565555433 345566788888888888655321 1 1223344455666777788888888888
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHHccCCH-------HHHHHHHHHHHH
Q 043284 280 EMEDNGVEPNEVTYGVMI-EAFCKGKKS-------GEARNLLDDMLQ 318 (527)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 318 (527)
.+.+.. ..+...|..+. .++...++. ++|.++|.++..
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 887753 22334444333 234456666 778888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.81 Score=40.07 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=52.3
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
....|++.+|..+|+..... .+.+...-..++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44455555555555555543 1223344445555556666666666666555443111111111112223333333333
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
...+-...-.. +.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22322222221 2244444445555555555555555444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.39 Score=36.21 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.++++++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444321 13344444444444444444444444444444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.13 Score=38.47 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=51.8
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV---FTYNMLIQGFCKIGNA 445 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 445 (527)
+....|+.+.|++.|.+.....|.....||.-.+++--.|+.++|++-+++..+..-.-.. ..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666777777776665555566666776666666666767766666666654111111 1222233344555666
Q ss_pred HHHHHHHHHHHHCC
Q 043284 446 KEGIRILEEMLDKG 459 (527)
Q Consensus 446 ~~A~~~~~~~~~~~ 459 (527)
+.|..-|+.+.+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=2 Score=43.27 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
.+.....-+.++.+-.-++.|+.+-..- +.+...-.......+..+.+.|++++|...|-+.... ..|. .
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~ 402 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----E 402 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----H
Confidence 4556778888888889999999887654 2211111234455566667889999999988877653 2111 3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++.-|....+...-..+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+... . |.. ..-....+..+.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhC
Confidence 56666677777788888899988885 455556788999999999998887776554 1 111 112344555555555
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGD 245 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (527)
-.++|.-+-.+... .......++ -..+++++|++.+..
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 55555554443332 222222222 234566666665544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.74 Score=43.28 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=100.3
Q ss_pred CHhHHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 340 KVEDACELWKRLLRK-NCMPD-NAISSTIIHWLCK---------EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA 408 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (527)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+..++.....+.|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888832 12232 4444444444332 123556677777777778889998888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHH
Q 043284 409 ELTEAGRLWDDMVEKGVEPN-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT---SFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~ 484 (527)
+++.|...|++.... .|| ..+|......+...|+.++|.+.+++.++. .|... .....++.|+..+ .++|+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 899999999999866 555 456666666777789999999999998874 45442 2333344566555 67888
Q ss_pred HHHHHHHh
Q 043284 485 KVVSMATA 492 (527)
Q Consensus 485 ~~~~~~~~ 492 (527)
+++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87766433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.3 Score=43.27 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=104.6
Q ss_pred hHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHH-hcCCchHHHHHHHHhhhCCC-CCcCh---hhHHHHHHHHHhcCCh
Q 043284 58 DLALQIFHYAGKFHPNFSHN--YDTYHSIIHKLA-RARAFDAVESLLTELKQNPE-IKCGE---NLFITVIRNYGLAGRP 130 (527)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~ 130 (527)
.-|++.++.+.+ +...+|. ..++..++..+. ...+++.|+..+++...... ..... .....++..+.+.+..
T Consensus 38 ~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 456777777753 3333333 335666677666 67899999999998765421 11111 1122445666666555
Q ss_pred hHHHHHHHHHHhcCCC--CC--HHHHHHH-HHHHHhcCCHHHHHHHHHHhhhcCC--CCCChhhHHHHHHHHH--cCCCh
Q 043284 131 ELAVKTFLRIEKFNVQ--RS--VRSLNTL-LNALVQNKRYDLVHLMFKNSRHKFK--VVPNVFTCNILIKALC--KKDDV 201 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~--~~--~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~ 201 (527)
. |...+++..+.--. .+ ...+..+ +..+...+++..|.+.++.+..... ..|....+..++.+.. ..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 88888887654211 11 2222222 2223334789989998888776532 2333444444544443 44556
Q ss_pred HHHHHHHHhcccCC---------CCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMG---------MVPNLVTHTTILGGY--VWRGDIENAKRVFGDIL 247 (527)
Q Consensus 202 ~~A~~~~~~~~~~~---------~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 247 (527)
+++.+.++.+.... ..|-..+|..++..+ ...|+++.+.+.++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66766666552211 123455676666654 45777767766655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.61 Score=36.69 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
.++..+...+.......+++.+....+.+....+.++..|++.+ ..+.+..++. ..+.......++.|.+.+-
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444555555555555555553322345555566666665442 2333333331 1122333445566666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCChhhHHHHHHH
Q 043284 445 AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYES-GNEGEVGKVVSMATASGSVESDSWNFLLTR 507 (527)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~ 507 (527)
++++..++.++.. +...+..+... ++.+.|.+++.+ ..++..|..++..
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~ 134 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 6666666665422 11122222222 666666666665 2345566666553
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.7 Score=41.11 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=68.1
Q ss_pred CCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCChhhHH
Q 043284 426 EPNVFTY-NMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE--SGNEGEVGKVVSMATASGSVESDSWN 502 (527)
Q Consensus 426 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 502 (527)
.|+..++ +.+++-+.+.|...+|...+..+... .+|+...|..++..-.. +-+...++++++.|......|+..|.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 4455444 45667777888889999999888875 34566667777655322 22377888889888887778888998
Q ss_pred HHHHHH--HhchhhhHHHHHHHHh
Q 043284 503 FLLTRI--VSDLDSGAGALDELLV 524 (527)
Q Consensus 503 ~ll~~~--~~~~~~a~~~~~~~l~ 524 (527)
.++... +|..+-+-.++-++++
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
Confidence 888843 3766666666666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.63 Score=44.55 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043284 291 VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWL 370 (527)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (527)
...+.++..+.+.|-.+.|+++..+-. .-.+...+.|+.+.|.++.+. ..+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 335555666666666666666533211 123444566666666655332 22555666666666
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
.+.|+++-|+..|.+... +..|+-.|...|+.+.-.++.+.....|- ++....++...|+.++..+
T Consensus 358 L~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 666777777666666532 44555556666666666666555554431 3444445555566666665
Q ss_pred HHHH
Q 043284 451 ILEE 454 (527)
Q Consensus 451 ~~~~ 454 (527)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.71 E-value=3.4 Score=43.55 Aligned_cols=126 Identities=10% Similarity=0.154 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhc-ccCCCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHhhhCCCCCcChhhHHHHH--
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAG-KFHPNFSHNYDTYHSIIHKLARA-RAFDAVESLLTELKQNPEIKCGENLFITVI-- 121 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-- 121 (527)
..+.-+..++++.+|.++.++-. ..+.-+..++..+..-+.++.+. ++.+--...+..+.+. .+ +...|....
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~e-Dv--tk~~y~~~~~s 758 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEE-DV--TKTMYSSTSGS 758 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccc-hh--hhhhccccccc
Confidence 34455567788888877765441 11122223344555555555544 3333333333333321 11 111111100
Q ss_pred --HHHHhc----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhh
Q 043284 122 --RNYGLA----GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK--RYDLVHLMFKNSR 176 (527)
Q Consensus 122 --~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 176 (527)
..|... .+.+...++++...... .|+ .....++..|.+.+ ..+.++....+..
T Consensus 759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 759 GKQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred cceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 011111 23334444444444433 344 44445667777766 5566666655554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.36 Score=43.23 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 329 CKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
..+.+.|...|+.+.|..-|+.+.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHH
Confidence 334555555666666555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.3 Score=38.37 Aligned_cols=96 Identities=23% Similarity=0.186 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH-
Q 043284 256 TTYTVLMDGYIKLGRLTDAVKVMDEMEDN-GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVID- 333 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 333 (527)
..+......+...+++..+...+...... ........+......+...++...+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44444455555555555555555554431 1122334444444444455555555555555554322221 11111111
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 043284 334 LLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~ 352 (527)
++...|+++.+...+....
T Consensus 139 ~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 139 ALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.89 Score=36.25 Aligned_cols=129 Identities=11% Similarity=-0.072 Sum_probs=74.8
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh--hhHHHHHHHHHh
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE--NLFITVIRNYGL 126 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 126 (527)
--+.+.+..++|+.-|..+.+...+.-| ..+...........|+...|...|.++-...+.+.-. ..-....-.+..
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 3455677888888888877544333222 2233344555667778888888888777643322111 111122233456
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.|.++....-.+-+...+-+-....-..|.-+-.+.|++.+|..+|+.+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6777777776666655443333444555666666777777777777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.5 Score=38.99 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=55.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCHhH
Q 043284 268 LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC----CKVIDLLCEEGKVED 343 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~ 343 (527)
.|.+.+|-..++++.+. .+.|...+...=.++.-.|+.+.-...++++... ..++...| .....++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555543 2334445554445555555555555555555432 11122111 122223334555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 344 ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
|++.-++..+.+ +.|.....++...+.-.|++.++.++..+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555555544 234444455555555555555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.6 Score=37.75 Aligned_cols=225 Identities=20% Similarity=0.116 Sum_probs=158.8
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHH
Q 043284 268 LGRLTDAVKVMDEMEDNGVE-PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR-KYVPSSALCCKVIDLLCEEGKVEDAC 345 (527)
Q Consensus 268 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (527)
.+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554221 13567777778888899999999888887753 23335556666777778888899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 346 ELWKRLLRKNCMPDNAISSTIIH-WLCKEGKIWEAKKLFDEFERGSI---PSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
..+.........+ ......... .+...|+++.+...+.......+ .....+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764433 122223333 78899999999999999844322 233444444555677889999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 422 EKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 422 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+.....+.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 762 22 3667788888888889999999999999875 344 445555666666777899999999998777654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.1 Score=40.58 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCM-PDNAISSTIIHWLCKEGKIWEAKKLFDEFE 387 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (527)
.+..++.+.|+.++|++.+.++.+..+. ....+...|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455555555555555555543222 122344445555555555555555555553
|
The molecular function of this protein is uncertain. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.5 Score=41.29 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=15.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 475 YESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
.+.++.++|+++.++ ..|.+.|..++...
T Consensus 672 ~el~die~AIefvKe-----q~D~eLWe~LI~~~ 700 (846)
T KOG2066|consen 672 NELRDIEKAIEFVKE-----QDDSELWEDLINYS 700 (846)
T ss_pred HHhhCHHHHHHHHHh-----cCCHHHHHHHHHHh
Confidence 334555556655554 34566666666533
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.67 Score=40.11 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCC---CCCCHH--------HHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPN---FSHNYD--------TYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
......-++.+.-..|+..|+...++.++.-.+ ...+.. ....=|++++..|+|.++..+.-+.-+. |
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-p 113 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-P 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-c
Confidence 345677777788889999999998887643211 111111 1222366777788888887777666653 3
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 043284 110 IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ-----NKRYDLVHLMF 172 (527)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~ 172 (527)
-+....+....|-.|.+.|.+..+.++-...+..--..+..-|..++..|.. .|.+++|+++.
T Consensus 114 EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 114 EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3445567777777788888888888777766653212223335555555443 57777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.4 Score=34.61 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+.....++..+...+.+.....+++.+++.++ .++...+.++..+++.+ ..+..+.++. .. +......+
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~-----~~yd~~~~ 75 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN--KS-----NHYDIEKV 75 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh--cc-----ccCCHHHH
Confidence 34556778888778888888888888865532 45667777788777653 3333344432 11 22234456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQN-KRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
++.|.+.+.++++.-++.++.. +...+..+... ++++.|.+.+.+. .+...|..++..+.
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 6777777777777777766532 12233333333 6677777666542 14556666665554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.34 Score=42.56 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----cCCCCCChhhHHHH
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH----KFKVVPNVFTCNIL 191 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 191 (527)
++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.. ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555666666666666666666554 45555666666666666666666666655443 23555555555554
Q ss_pred HHH
Q 043284 192 IKA 194 (527)
Q Consensus 192 ~~~ 194 (527)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.31 Score=42.03 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR----------------GDIENAKRVFGDILDRGWVPDATTYTVLM 262 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (527)
+.++-....++.|.+-|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444455555555566666666666665544321 11234455556666666666666655555
Q ss_pred HHHHhcC
Q 043284 263 DGYIKLG 269 (527)
Q Consensus 263 ~~~~~~g 269 (527)
+++.+.+
T Consensus 166 n~FGr~~ 172 (406)
T KOG3941|consen 166 NAFGRWN 172 (406)
T ss_pred HHhcccc
Confidence 5555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.7 Score=34.80 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH-
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSV-RSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL- 191 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 191 (527)
...|...++ +.+.+..++|+..|..+.+.|...-+ -............|+...|...|+++-... |.+.....+
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHH
Confidence 345555444 46788999999999999987743222 233345566778899999999999987652 222222222
Q ss_pred ----HHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 192 ----IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 192 ----~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
.-.+...|.++....-.+.+...+-+.-...-..|.-+-.+.|++..|.++|.++....
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 22356789999998888888776644445556677777889999999999999988753
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.76 E-value=3 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043284 472 EGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~ 491 (527)
..+.+.+++++|.++++-+.
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888887643
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.04 Score=30.70 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=22.7
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVE 98 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 98 (527)
|+++++.+| .+..+|..+...+...|++++|+
T Consensus 2 y~kAie~~P---~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP---NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC---CCHHHHHHHHHHHHHCcCHHhhc
Confidence 455556666 36777888888888888877775
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.92 Score=32.48 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 446 KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
-+..+-++.+...++.|++.+..+.+++|.|.+++.-|.++++-+..+..+....|..++..+.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHh
Confidence 3566777777777888999999999999999999999999999887777665558888877543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.3 Score=31.43 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 444 NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
|.-++.+-++.+...++.|++.+..+.+++|.|.+++.-|.++++-...+.......|..++..+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 455677777888888888999999999999999999999999999876555545567887777543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.97 Score=37.16 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCC-CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNP-EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
..+..++..|.+.|+.+.|.+.|.++.+.. +...-...+..+++.....|++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777777777777777777766531 1112233556667777777777777776666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.55 Score=38.29 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPE-IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
+-..+...+...|++++|..-++....... ......+-..+.+.....|.+++|+.+++.....+. .......-.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 344566677788888888888887775311 111122234567777888888888888887775432 23334455678
Q ss_pred HHhcCCHHHHHHHHHHhhhcC
Q 043284 159 LVQNKRYDLVHLMFKNSRHKF 179 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~ 179 (527)
+...|+-++|+.-|+......
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888877663
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.67 Score=40.78 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE-----KGVEPNVFTYNMLI 436 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 436 (527)
++..++..+...|+.+.+...++++....+-+...|..++.+|.+.|+...|+..|+++.. .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455666777777777777777777666777777777777777777777777777776654 46777666655554
Q ss_pred HH
Q 043284 437 QG 438 (527)
Q Consensus 437 ~~ 438 (527)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.54 Score=40.65 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----------------ChhHHHH
Q 043284 218 PNLVTHTTILGGYVW-----RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG----------------RLTDAVK 276 (527)
Q Consensus 218 p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~ 276 (527)
.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355666666655543 3556666777888888999999999999888775532 2334666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 043284 277 VMDEMEDNGVEPNEVTYGVMIEAFCKGKK 305 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (527)
++++|...|+.||-.+-..+++++.+.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777777777777777665554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.87 Score=37.26 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=62.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCc---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKC---GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ 161 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (527)
+.-+.+.|++++|..-|..++...|..+ ....|..-..++.+.+.++.|++-..+..+.+ +....+...-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4445677888888888877776522211 12345556667778888888888877777766 3444555566677777
Q ss_pred cCCHHHHHHHHHHhhhc
Q 043284 162 NKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 162 ~g~~~~a~~~~~~~~~~ 178 (527)
...+++|++-|+++...
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888888777764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.3 Score=34.93 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPN-----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESG 478 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 478 (527)
...|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..++++.+ |+. ..+..-+.+|.+..
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence 4445555555555555443 1111 1223333344455555555555555555533 321 22223344455555
Q ss_pred ChhHHHHHHHHHHhCCCCC
Q 043284 479 NEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~ 497 (527)
++++|++-|+++....|..
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 5566665555555555433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.41 Score=42.01 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043284 355 NCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI----PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF 430 (527)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 430 (527)
|...+..+...++..-....+++.+...+-++..... ++...+ ..++.+ -.-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3344444445555555556677777777777643221 111111 122222 2235667777777777778888888
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
++..+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887777776643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.85 E-value=8.9 Score=39.36 Aligned_cols=297 Identities=11% Similarity=0.041 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH----HhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL----ARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
.....-...+...|.+.+|+..--.+ .++.....++.-+ ...++..-...+.+.+... -..-++...
T Consensus 348 ~lH~~Aa~w~~~~g~~~eAI~hAlaA--------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~-~l~~~P~Lv 418 (894)
T COG2909 348 ELHRAAAEWFAEHGLPSEAIDHALAA--------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAE-LLASTPRLV 418 (894)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHhC--------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH-HHhhCchHH
Confidence 45666677777788888887776555 2344444444433 2334444444333333221 011112222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHhhhcCC---CCCChh
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVR-------SLNTLL-NALVQNKRYDLVHLMFKNSRHKFK---VVPNVF 186 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 186 (527)
..-+-......++++|..++.++...-..|+.. .++.+- ......|++++|.++-+....... ..+...
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 222334456789999999998886542222211 222222 223346888999888877765411 223455
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHH-----HHHHhcCChH--HHHHHHHHHHHCC--CC----C
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTIL-----GGYVWRGDIE--NAKRVFGDILDRG--WV----P 253 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~--~a~~~~~~~~~~~--~~----~ 253 (527)
.+..+..+..-.|++++|..+.....+..-.-+...+..+. ..+..+|+.. +.+..+....... -. +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66777778888999999998887766542223433333222 2345667332 2233333322210 01 1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCC----
Q 043284 254 DATTYTVLMDGYIKLGRLTDAVKVMDEM----EDNGVEPNEVTY--GVMIEAFCKGKKSGEARNLLDDMLQRKYVP---- 323 (527)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 323 (527)
-..++..++.++.+ ++.+..-.... ......|-.... ..++......|+.++|...+.++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 12334444555544 33333322222 222222222222 367778888999999999998887643222
Q ss_pred CHHhHHHHHH--HHHhcCCHhHHHHHHHH
Q 043284 324 SSALCCKVID--LLCEEGKVEDACELWKR 350 (527)
Q Consensus 324 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 350 (527)
+.......+. .....|+...+.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 23456777777766655
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.65 Score=38.16 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH--H
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI--T 119 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~ 119 (527)
..+..++..|.+.|+.+.|.+.|.++.....+...-...+..+++...-.+++..+...+.++........+...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34678999999999999999999999654444344466788899999999999999999988876521111211111 1
Q ss_pred H--HHHHHhcCChhHHHHHHHHHH
Q 043284 120 V--IRNYGLAGRPELAVKTFLRIE 141 (527)
Q Consensus 120 l--~~~~~~~g~~~~A~~~~~~~~ 141 (527)
+ .-.+...|++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 112234566666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.6 Score=34.39 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
+.+||.+.-.+...|+++.|.+.|+...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 44455555555555555555555555443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.70 E-value=4.5 Score=35.62 Aligned_cols=149 Identities=9% Similarity=0.114 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh-cC-ChhHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL-AG-RPELAVKTFLRIEKF-NVQRSVRSLNTLLN 157 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 157 (527)
|..++. +..-..+|+.+|+.......+-.+..+...+++.... .+ ....--++.+-+... +..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555542 3445778899998543212244577788888887776 22 222233333333332 34688888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHh-----cccCCCCCCHHHHHHHHHHHHh
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDE-----MPSMGMVPNLVTHTTILGGYVW 232 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~p~~~~~~~l~~~~~~ 232 (527)
.++..+++.+-.++++......+...|...|..+|+...+.|+..-...+.++ +...|+..+...-..+-..+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999999999999999877655666888999999999999999999988876 3445666666666555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.14 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPN 73 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (527)
+..++..+...|++++|+..|+++++.+|.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 567788888888888888888888877663
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.48 E-value=11 Score=39.28 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHH--HHHHHhcCCchHHHHHHHHhhhC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSI--IHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
+..-+..+.+..++++|..+-+......|........-..+ +.-+..++++++|.+.|+++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 78888899999999999999887732222111001111111 12245789999999999998763
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.46 E-value=6.7 Score=36.67 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=44.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043284 359 DNAISSTIIHWLCKEGKIWEAKKLFDEFERGS----IPSLLTYNTLIAGMCESAELTEAGRLWDDMVE 422 (527)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (527)
...++..++..+.+.|.++.|...+..+.... ...+.....-+......|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888874422 11334444456667777888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.14 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPN 73 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (527)
+..++..+...|++++|++.|+++++..|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 556788888888888888888888777663
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.34 E-value=5.9 Score=35.74 Aligned_cols=130 Identities=13% Similarity=0.173 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhcCCCC--CChhhHHHHHHHHHcCCCh
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ--NK----RYDLVHLMFKNSRHKFKVV--PNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 201 (527)
+++.+.+++.+.+.|+..+..+|.+....... .. ...+|..+|+.|++.+..- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888887777666553333333 12 2356777888887764322 223334444322 22222
Q ss_pred ----HHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043284 202 ----EGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGD--IENAKRVFGDILDRGWVPDATTYTVL 261 (527)
Q Consensus 202 ----~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (527)
+.+..+|+.+.+.|+..+-. ....++..+....+ ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455555555555443322 22222221111111 23455555666666555555444433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.9 Score=36.95 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=47.0
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCC------------chHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARA------------FDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
|++.++.+| .|..+|..++..--..-. .+.-+.+++++++..| .+...+...+..+.+..+.+
T Consensus 8 l~~~v~~~P---~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np--~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 8 LNRRVRENP---HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP--DSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHhCc---ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHH
Confidence 444545565 477788887765543322 2334455555555422 24445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
+..+.++++.... +.+...|...+...
T Consensus 83 ~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 83 KLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 5555565555543 23444554444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.25 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 467 FSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
+..++..+...|++++|++.++++.+..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4455555556666666666666555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.4 Score=32.85 Aligned_cols=53 Identities=15% Similarity=-0.063 Sum_probs=29.5
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.+.++.+++..++..+.--.|.....-..-...++..|++.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666664333333333333344556667777777777776554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.22 Score=28.11 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=10.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.23 Score=28.04 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
++..|+..|.+.|++++|+++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999954
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.53 Score=43.85 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=83.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
+.-....|+...|-+-+....+.. +-++.........+...|+++.+...+............+..++++.....|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 334445677776665555544432 2233333344455677889999888888776655566677788888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+|..+-.-|....+. ++.............|-++++...|++....+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999888888876554 44444433444455677888888888887643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=4.7 Score=33.16 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=42.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIP---SLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN 444 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 444 (527)
..+...+++++|+..++........ ....--.|.+.....|.+++|+.+++...+.+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3455556666666655544221111 111122344455555666666666655543321 12222333345555566
Q ss_pred HHHHHHHHHHHHHC
Q 043284 445 AKEGIRILEEMLDK 458 (527)
Q Consensus 445 ~~~A~~~~~~~~~~ 458 (527)
-++|+.-|++.+..
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.3 Score=43.30 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=69.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN 479 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (527)
..-|.++|.+++|+..|.+.+.. .| |++++..-..+|.+...+..|..-...++..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999888754 66 88888889999999999998888777776532 0012234444444455688
Q ss_pred hhHHHHHHHHHHhCCCCCh
Q 043284 480 EGEVGKVVSMATASGSVES 498 (527)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~ 498 (527)
..+|.+-++.+.+..+.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8888888888877765533
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.61 E-value=4.6 Score=32.56 Aligned_cols=38 Identities=13% Similarity=0.347 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 135 KTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMF 172 (527)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 172 (527)
+.++.+.+.+++++...+..+++.+.+.|++.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555566666666666777777766666655554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.4 Score=42.51 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=57.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
...+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+
T Consensus 646 lal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 3445666776666654432 445567777777777777777777765443 334555555666665
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 710 ~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 555555555444421 2223345556777776666654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.32 E-value=13 Score=37.19 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.7
Q ss_pred CHhHHHHHHHHHHhCC
Q 043284 340 KVEDACELWKRLLRKN 355 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~ 355 (527)
+...|.++|..+.+.|
T Consensus 343 d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 3445555555555554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.20 E-value=5 Score=31.96 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 043284 265 YIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~ 283 (527)
+...|++.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555554443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.17 Score=28.14 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 390 SIPSLLTYNTLIAGMCESAELTEA 413 (527)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~a 413 (527)
.|.+...|+.+...|...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344455555555555555555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.01 E-value=19 Score=38.37 Aligned_cols=106 Identities=20% Similarity=0.173 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCC
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVF--TYNMLIQGFCKIGN 444 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 444 (527)
...+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|+.+..++... -+.. +-..|+.-+...++
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455667777666666521 122456677778888888777766432 1222 12456677777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 445 AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
.-+|-++..+.... |. ..+..|++.-.+++|.++.....
T Consensus 1015 h~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 88887777776542 21 22233556666777776666543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=12 Score=35.78 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=93.0
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043284 183 PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLM 262 (527)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (527)
.|....-+++..+..+..+.-...+-.+|..-| -+...|..++.+|..+ ..+.-..+|+++.+..+. |+..-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 345555666666666666666666666666654 3555666667776666 445556666666665433 333333344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHH
Q 043284 263 DGYIKLGRLTDAVKVMDEMEDNGVEP--N---EVTYGVMIEAFCKGKKSGEARNLLDDMLQR-KYVPSSALCCKVIDLLC 336 (527)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 336 (527)
..|-+ ++.+.+...|.++...-++. + ...|..+.... ..+.+....+..++... |...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 66666666666665432210 1 12333333211 34455555555555442 22222333444445556
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIH 368 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (527)
...++++|++++..+.+.+-+ |...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 666666666666666665422 4444444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.74 E-value=16 Score=36.73 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHH----H-HHcCCChHHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHh
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIK----A-LCKKDDVEGAIRVLDEMPS-------MGMVPNLVTHTTILGGYVW 232 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~ 232 (527)
...+..+++...... +...-..+.. + +....+.+.|+.+|..+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 345666666665542 2222222222 2 3345677777777777655 33 22344455555555
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----c
Q 043284 233 RG-----DIENAKRVFGDILDRGWVPDATTYTVLMDGYIK-LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFC----K 302 (527)
Q Consensus 233 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 302 (527)
.. +.+.|..++....+.|. |+.......+..... ..+...|.++|......|. ...+..+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 32 45667777777666652 233222222211111 2355677777777776652 222222222222 2
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 043284 303 GKKSGEARNLLDDMLQRK 320 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~ 320 (527)
..+...|..++.+..+.|
T Consensus 377 ~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCCHHHHHHHHHHHHHcc
Confidence 335566666666666665
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.2 Score=39.70 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..-+.-|+++|.+++|+..|...+...| .|+..+.....+|.+..+|..|..-...+...+. .-...|..-+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P---~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP---HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC---CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHH
Confidence 4556667788888888888887765554 4677777778888888888877776666655311 1223444444444
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 043284 125 GLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~ 143 (527)
...|+..+|.+-++..+..
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh
Confidence 4556666676666666665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.41 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=12.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 432 YNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|..+..++...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444455555554444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.44 E-value=3.7 Score=29.56 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 343 DACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++....+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 555666666666777777777777777777777777777777774333333335555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.95 E-value=15 Score=34.98 Aligned_cols=415 Identities=12% Similarity=0.040 Sum_probs=219.8
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH-HhcCCchHHHHHHHHhhhCCCCCcC-----hhhH
Q 043284 46 RLVSMIFRQQ--NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL-ARARAFDAVESLLTELKQNPEIKCG-----ENLF 117 (527)
Q Consensus 46 ~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~ 117 (527)
.+++.+..+| +...+++.++......+.......+...++..+ ....+++.|..-++++......-|+ -..+
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 4556666777 888999999888777665443444555555543 3568899998888877654211112 2345
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 118 ITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSV---RSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 118 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
..+...|.... .+..+..++++..+..-.... .....++..+.-..++..|.+++.---.. ..+-...|.-++.
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s--Ad~~~~~ylr~~f 169 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES--ADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc--cchhhhHHHHHHH
Confidence 56667777666 788899999888775311111 22334666777788899998886433221 1222233322222
Q ss_pred H------HHcCCC---hHHHHHHHHhcccCCCCCCHHH------H--HHHHHHHHhcCChHHHHHHHHHHHHC---CC--
Q 043284 194 A------LCKKDD---VEGAIRVLDEMPSMGMVPNLVT------H--TTILGGYVWRGDIENAKRVFGDILDR---GW-- 251 (527)
Q Consensus 194 ~------~~~~~~---~~~A~~~~~~~~~~~~~p~~~~------~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-- 251 (527)
. ..-..+ +..+.....++.+. ..+|..- | +.-+..|...|+...+...++++.+. +.
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 1 222233 34444444555543 3344322 1 12233455678888887777776542 11
Q ss_pred ----------CCCHHhHHHHHH-------------HHHhcCChhHHHHHHHHHHHC----CCCC-CHHHH--------HH
Q 043284 252 ----------VPDATTYTVLMD-------------GYIKLGRLTDAVKVMDEMEDN----GVEP-NEVTY--------GV 295 (527)
Q Consensus 252 ----------~~~~~~~~~l~~-------------~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~--------~~ 295 (527)
.|....+..+.. .-.-.|-+++|.++-+++... .-.+ ....+ ..
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 122222211111 011234455555554444321 1111 22222 22
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC-CCCCHH--------hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhH--H
Q 043284 296 MIEAFCKGKKSGEARNLLDDMLQRK-YVPSSA--------LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS--S 364 (527)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 364 (527)
++.+-.-.|++.+|++-+.+|.+-- -.|.+. .-..+...+...+.++.|..-|....+.-...|...+ .
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2233345789999999888887621 122211 1112233345568888888888877765333343333 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHH------H--HHH--HHHhcCCHHHHHHHHHHHHHcCCCCC-----H
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYN------T--LIA--GMCESAELTEAGRLWDDMVEKGVEPN-----V 429 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~-----~ 429 (527)
.+...|.+.|+.+.-.++++.+.. ++..++. . ++. .....+++.+|..++.+-.+..-.-| .
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p---~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGP---LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCC---CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 345568888887777777777622 2222211 1 111 12467899999998887665321111 1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHH
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDK-GCFPNKTS 466 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 466 (527)
-....|...+...|+..++.+...-.... ...||..+
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 12233334556678888887766655421 12356543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.92 E-value=10 Score=32.96 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=94.4
Q ss_pred CCchHHHHHHHHhhhCCCCC--cChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHHhcCC
Q 043284 92 RAFDAVESLLTELKQNPEIK--CGENLFITVIRNYGLAGRPELAVKTFLRIEKF---NV--QRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~ 164 (527)
.+.++|+.-|+++.+..|-. ..-.++-.++....+.|++++..+.+.+++.. .+ .-+....+.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 45566666666665543221 12223445566666666666666666665431 11 1234455666665555555
Q ss_pred HHHHHHHHHHhhhcCCCCCChh----hHHHHHHHHHcCCChHHHHHHHHhcccCCC----CCC-------HHHHHHHHHH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVF----TCNILIKALCKKDDVEGAIRVLDEMPSMGM----VPN-------LVTHTTILGG 229 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~p~-------~~~~~~l~~~ 229 (527)
.+-..++++.-.......-|.. +-..|...|...+.+.+..+++.++..... .-| ...|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5544444443221111111211 224466667777777777777776654211 011 2356666667
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCCHHhHHHHH----HHHHhcCChhHHHH
Q 043284 230 YVWRGDIENAKRVFGDILDRG-WVPDATTYTVLM----DGYIKLGRLTDAVK 276 (527)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~a~~ 276 (527)
|....+-.....+|++.+... .-|.+.....+- .++.+.|++++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 777777777777777665431 233433333221 23345677777654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=15 Score=34.85 Aligned_cols=122 Identities=9% Similarity=-0.030 Sum_probs=80.1
Q ss_pred HHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh
Q 043284 51 IFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP 130 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 130 (527)
....|+...|.+-...+++..|+.+ + ............|+++.+...+..+... +.....+...+++.....|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p-~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDP-V--LIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCc-h--hhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 3456777777666666666666532 2 3333344456778888888888777654 222555667778888888888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 131 ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+.|..+-+-|+...+ .+++.........-..|-+|++...|+++...
T Consensus 374 ~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 888888888877654 34444444444455567788888888777543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.59 E-value=3 Score=34.53 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=58.4
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN---VQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 164 (527)
+.+.| -+.|...|-.+...+. --++.....++..|. ..+.+++++++.+.++.. -.+|+..+.+|+..+.+.|+
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44444 5678888888877533 345556666666554 778999999998887752 25678999999999999999
Q ss_pred HHHHH
Q 043284 165 YDLVH 169 (527)
Q Consensus 165 ~~~a~ 169 (527)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99875
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.50 E-value=14 Score=33.98 Aligned_cols=78 Identities=6% Similarity=-0.007 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHH
Q 043284 378 EAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK---IGNAKEGIRILEE 454 (527)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 454 (527)
.-+.+++++.+..+.+...+..++..+.+..+.++..+-|+++.... +-+...|...+..... .-.++....+|.+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 34445555544455555566666666666666666666666666541 1134445554443322 2235555555555
Q ss_pred HH
Q 043284 455 ML 456 (527)
Q Consensus 455 ~~ 456 (527)
.+
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 54
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.49 E-value=8.1 Score=31.20 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 206 RVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
++++.+.+.+++|+...+..++..+.+.|.+.... +++..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 34444445556666666666666666666544333 2333344344333332221111 1222233322222221
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 286 VEPNEVTYGVMIEAFCKGKKSGEARNLLDDM 316 (527)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (527)
=...+..++..+...|++-+|..+.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344555556666666666665553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.34 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHP 72 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 72 (527)
..++.++.+.|++++|++.|+.+++..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3566777777777777777777766655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.23 E-value=16 Score=34.14 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=41.7
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVP---NLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
...+|..++..+.+.|.++.|...+..+...+... +......-++..-..|+..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777888888877777776643111 233344445556667777777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.92 E-value=25 Score=35.87 Aligned_cols=89 Identities=9% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhc--
Q 043284 262 MDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK-YVPSSALCCKVIDLLCEE-- 338 (527)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-- 338 (527)
...+.-.|.++.|++.+-+. .+...+..++...+..|.-.+-.+... ..+.... ..|..--+..++..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34555678888888887661 112334455444444332222111111 2222111 011114466677777653
Q ss_pred -CCHhHHHHHHHHHHhCC
Q 043284 339 -GKVEDACELWKRLLRKN 355 (527)
Q Consensus 339 -~~~~~a~~~~~~~~~~~ 355 (527)
.+...|.+++-.+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 57778888887766543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.91 E-value=13 Score=32.83 Aligned_cols=136 Identities=12% Similarity=0.068 Sum_probs=94.7
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043284 132 LAVKTFLRIEK-FNVQRSVRSLNTLLNALVQN-K-RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 132 ~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
+|+.+|+.... ..+-.|..+...+++..... + ....-.++.+-+...++..++..+....+..+++.+++.+-.+.+
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 35555553221 12345666666666666652 2 333334445555555566778888899999999999999999999
Q ss_pred HhcccC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHhHHHHHHHHHh
Q 043284 209 DEMPSM-GMVPNLVTHTTILGGYVWRGDIENAKRVFGD-----ILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 209 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
+..... +...|...|..+++.....|+..-..++.++ +.+.++..+...-..+-+.+.+
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 987765 5667899999999999999998887777664 3455677777766666555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.87 E-value=5.5 Score=38.77 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
......++..+-++|-.++|+++-. |+. .-.....+.|+++.|.++..+.. +..-|..|
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~-----------D~d---~rFelal~lgrl~iA~~la~e~~-------s~~Kw~~L 672 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELST-----------DPD---QRFELALKLGRLDIAFDLAVEAN-------SEVKWRQL 672 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCC-----------Chh---hhhhhhhhcCcHHHHHHHHHhhc-------chHHHHHH
Confidence 3455678888888998888887631 221 22344567799999988877654 34568899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..+..+.|++..|.+.|.+..+. ..|+-.+...|+-+....+-....+. |. +.. ...+|...|+
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~-g~--~N~----AF~~~~l~g~ 736 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ-GK--NNL----AFLAYFLSGD 736 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh-cc--cch----HHHHHHHcCC
Confidence 99999999999999999887754 36777777788777666555555544 22 222 2235667899
Q ss_pred hHHHHHHHHhccc
Q 043284 201 VEGAIRVLDEMPS 213 (527)
Q Consensus 201 ~~~A~~~~~~~~~ 213 (527)
++++.+++..-..
T Consensus 737 ~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 737 YEECLELLISTQR 749 (794)
T ss_pred HHHHHHHHHhcCc
Confidence 9999988876543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.72 E-value=15 Score=33.18 Aligned_cols=127 Identities=8% Similarity=0.080 Sum_probs=58.1
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHhHHHHHHHHHhcCC--
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVW--RG----DIENAKRVFGDILDRGW---VPDATTYTVLMDGYIKLGR-- 270 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 270 (527)
++.+.+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++..+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666665555443322222 11 24456667777766532 1233333333322 2222
Q ss_pred --hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHhHHH
Q 043284 271 --LTDAVKVMDEMEDNGVEPNE--VTYGVMIEAFCKGKK--SGEARNLLDDMLQRKYVPSSALCCK 330 (527)
Q Consensus 271 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (527)
.+.+..+|+.+.+.|...+. .....++........ ...+.++++.+.+.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 24455556666665554332 222222222221111 2245556666666665555444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.58 E-value=26 Score=35.73 Aligned_cols=436 Identities=13% Similarity=0.145 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--hhhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCHH---
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--ENLFITVIRNYG-LAGRPELAVKTFLRIEKFNVQRSVR--- 150 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~--- 150 (527)
....|..++. .|++.++.+.+....+|. ..+...++..+. ...+++.|...+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4556666654 467788877754344433 345566777766 7799999999999886543233221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC---CCChhhHHHH-HHHHHcCCChHHHHHHHHhcccCC---CCCCHH
Q 043284 151 --SLNTLLNALVQNKRYDLVHLMFKNSRHKFKV---VPNVFTCNIL-IKALCKKDDVEGAIRVLDEMPSMG---MVPNLV 221 (527)
Q Consensus 151 --~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~ 221 (527)
....++..+.+.+... |...+++....... .+-...|..+ +..+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234566666666655 88888887665322 1122233333 333334489999999998876542 123344
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHHCCC---------CCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHHC---C
Q 043284 222 THTTILGGYV--WRGDIENAKRVFGDILDRGW---------VPDATTYTVLMDGYI--KLGRLTDAVKVMDEMEDN---G 285 (527)
Q Consensus 222 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~---~ 285 (527)
++-.++.+.. +.+..+++.+.++.+..... .|...+|..+++.++ ..|+++.+...++++.+. .
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4444444433 45667777777777643211 335566777766544 567777777666554321 0
Q ss_pred -CC--------------------------CCHHHH---------HHHHH--HHHccCCHHHHHHHHHHHHH--------c
Q 043284 286 -VE--------------------------PNEVTY---------GVMIE--AFCKGKKSGEARNLLDDMLQ--------R 319 (527)
Q Consensus 286 -~~--------------------------~~~~~~---------~~l~~--~~~~~~~~~~a~~~~~~~~~--------~ 319 (527)
-. +....| ..++. ..+..+..+++.+++++..+ .
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 00 111111 11111 22334544455555544322 1
Q ss_pred CCCCCH--------HhHHHH---------HHHHHhcCCHhHHHHHHHHHHhCCC-CCC-------HhhHHHHHHHHHHcC
Q 043284 320 KYVPSS--------ALCCKV---------IDLLCEEGKVEDACELWKRLLRKNC-MPD-------NAISSTIIHWLCKEG 374 (527)
Q Consensus 320 ~~~~~~--------~~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~ 374 (527)
...+.. ..+... +-..+-.+++..+...++.+..... .|+ +..+....-.+...|
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g 418 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG 418 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC
Confidence 111111 111111 1223456889899999988876421 111 222333334455679
Q ss_pred CHHHHHHHHH-------HH--hcCCCCCHHHHHH--HHHHHHh--cCCHHH--HHHHHHHHHHc-CCCCC--HHHHHHH-
Q 043284 375 KIWEAKKLFD-------EF--ERGSIPSLLTYNT--LIAGMCE--SAELTE--AGRLWDDMVEK-GVEPN--VFTYNML- 435 (527)
Q Consensus 375 ~~~~a~~~~~-------~~--~~~~~~~~~~~~~--l~~~~~~--~~~~~~--a~~~~~~~~~~-~~~p~--~~~~~~l- 435 (527)
+.+.|...|. .. ..+...+..++.. ++..+.. ....++ +.++++.+... .-.|+ ..++..+
T Consensus 419 ~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~ 498 (608)
T PF10345_consen 419 DLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLV 498 (608)
T ss_pred CHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHH
Confidence 9999999998 33 2222223333222 1112222 222233 66777766542 11222 2333333
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHHC---CCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCChhhHHH
Q 043284 436 IQGFCKI--GNAKEGIRILEEMLDK---GCFPNK---TSFSLLIEGLYESGNEGEVGKVVSMATA----SGSVESDSWNF 503 (527)
Q Consensus 436 ~~~~~~~--g~~~~A~~~~~~~~~~---~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 503 (527)
+.++... -...++...+.+.++. ....+. .+++.+...+. .|+..+..+....+.. ........|..
T Consensus 499 ~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~ 577 (608)
T PF10345_consen 499 LATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHL 577 (608)
T ss_pred HHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3333221 1223555555444321 111121 22333333344 6777776555554333 32234557755
Q ss_pred HHHHH-------HhchhhhHHHHHHHH
Q 043284 504 LLTRI-------VSDLDSGAGALDELL 523 (527)
Q Consensus 504 ll~~~-------~~~~~~a~~~~~~~l 523 (527)
+...+ .|+.++|....++.-
T Consensus 578 v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 578 VASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 55522 288888888777654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.38 E-value=7.7 Score=34.50 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH
Q 043284 144 NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK--VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV 221 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 221 (527)
|.+....+...++..-....+.+.+...+-+++.... ..|+.. -...++.+. .-+.++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444455555555555556677777777766654311 112211 122333333 345668888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
+++.++..+.+.+++.+|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.07 E-value=13 Score=31.61 Aligned_cols=27 Identities=4% Similarity=-0.037 Sum_probs=16.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDRGWV 252 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (527)
+...-+..+++.+|+++|+++....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444566777777777777665433
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.7 Score=30.82 Aligned_cols=62 Identities=6% Similarity=0.160 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 447 EGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
+..+-++.+...++.|++.....-++++.+.+++..|.++|+-+..+..+....|..++..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45566667777778888888888888888888888888888887666655555566666633
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.92 E-value=15 Score=31.97 Aligned_cols=157 Identities=10% Similarity=0.092 Sum_probs=83.1
Q ss_pred cCCChHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC---C--CCCCHHhHHHHHHHHHhc
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNL---VTHTTILGGYVWRGDIENAKRVFGDILDR---G--WVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~ 268 (527)
+...+++|+.-|.+.++....... .....++....+.|++++....|.+++.. . -.-+..+.|.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345778888888877665322222 23455677777788888887777776532 0 112344556666655555
Q ss_pred CChhHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CC-------HHhHHHHH
Q 043284 269 GRLTDAVKVMDEMEDN-GVEPNE----VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV----PS-------SALCCKVI 332 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~ 332 (527)
.+.+-....|+.-.+. .-..+. .|-..+...|...+.+.+..++++++..+--. .| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5554444444432211 001121 23344566666666666666666666543111 01 13344445
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 043284 333 DLLCEEGKVEDACELWKRLLR 353 (527)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~ 353 (527)
+.|...++-.....++++...
T Consensus 199 QmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHH
Confidence 556666666666666665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.64 E-value=13 Score=30.96 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 043284 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK---GCFPNKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 411 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
+.|.+.|-.+...+.--++.....|...|. ..|.++++.++.++++. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555554443334444444444333 34556666666555532 22345556666666666666666553
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.56 E-value=7.1 Score=27.85 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 341 VEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLI 401 (527)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (527)
.-++.+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++.....+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3445556666666666667777777777777777777777777766433333334454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.22 E-value=32 Score=35.04 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC-------hhHHHHHHHHHHhc
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR-------PELAVKTFLRIEKF 143 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 143 (527)
......++..|.++|++++|.++....... .......|...+..|....+ -++...-|++....
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 334556666777888888888888554442 12234456666676665422 23445555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.94 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=14.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 469 LLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
.++.++.+.|++++|.+.|+++.+..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34555555566666666666555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.99 E-value=1.4 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 465 TSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
.+++.|+..|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777778888888888887777644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.98 E-value=11 Score=29.50 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.0
Q ss_pred HhcCCHHHHHHHHHHhh
Q 043284 160 VQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~ 176 (527)
...|++++|..+|+++.
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 33444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.83 E-value=4.2 Score=32.97 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=13.9
Q ss_pred hhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH
Q 043284 57 LDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL 88 (527)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (527)
++.|++.++.....+|. |...++.-+.++
T Consensus 7 FE~ark~aea~y~~nP~---DadnL~~WG~AL 35 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL---DADNLTNWGGAL 35 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH---hHHHHHHHHHHH
Confidence 45666666665555553 444444433333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.77 E-value=37 Score=35.20 Aligned_cols=224 Identities=13% Similarity=0.041 Sum_probs=115.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 043284 266 IKLGRLTDAVKVMDEMEDNGVEPNE-------VTYGVMI-EAFCKGKKSGEARNLLDDMLQR----KYVPSSALCCKVID 333 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 333 (527)
....++.+|..+..++...-..|+. ..++.+- ......|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3567888888888777654222222 1222222 1234578888888888776653 12234455566677
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHhhHH---HH--HHHHHHcCC--HHHHHHHHHHHhc----CCC---CCHHHHHH
Q 043284 334 LLCEEGKVEDACELWKRLLRKNCMPDNAISS---TI--IHWLCKEGK--IWEAKKLFDEFER----GSI---PSLLTYNT 399 (527)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~~~--~~~a~~~~~~~~~----~~~---~~~~~~~~ 399 (527)
+..-.|++++|..+.....+....-+...+. .+ ...+...|+ ..+....|..... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777899999988887766542222332222 22 233455663 2333333443311 111 12234445
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 043284 400 LIAGMCES-AELTEAGRLWDDMVEKGVEPNVFTY--NMLIQGFCKIGNAKEGIRILEEMLDKGCFP----NKTSFSLLIE 472 (527)
Q Consensus 400 l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~ 472 (527)
++.++.+. +...++..-+.--......|-...+ ..|+......|+.++|...+.++......+ +.......+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 1122222222222222112222222 366777788899999998888887532222 2222222332
Q ss_pred H--HHhcCChhHHHHHHHH
Q 043284 473 G--LYESGNEGEVGKVVSM 489 (527)
Q Consensus 473 ~--~~~~g~~~~A~~~~~~ 489 (527)
. ....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 3356888888777766
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.61 E-value=28 Score=33.56 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTII 367 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (527)
.|....-+++..+.++-.+.-+..+-.+|+.-| -+...+..++++|... ..+.-..+|+++.+..+. |...-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556666666666666666666666666643 2445566666666666 446666677766665433 333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIPS------LLTYNTLIAGMCESAELTEAGRLWDDMVEK-GVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 440 (527)
..|.+ ++.+.+...|.++.....|. ...|..+... -..+.+..+.+...+... |..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 66666666666653322221 1233333221 123445555555444432 22222333344444555
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 043284 441 KIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~ 458 (527)
...++++|++++...++.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 555666666666655554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.58 E-value=3.7 Score=34.35 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC-CCcChhhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPE-IKCGENLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~ 121 (527)
+.+..++.+.+.+++.+|++..+.-++.+| .+...-..++..++-.|+|++|..-++.+....+ ..+....|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP---tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP---TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC---ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 345566777788888888888877766666 3555666777778888888888887777766422 223344555555
Q ss_pred H
Q 043284 122 R 122 (527)
Q Consensus 122 ~ 122 (527)
.
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.46 E-value=36 Score=34.68 Aligned_cols=105 Identities=8% Similarity=0.011 Sum_probs=52.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
+..+.+.+.+++|+.+.+......+...-..+....+..+...|++++|-...-.|.. .+..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 4445555666666666665544322111233455566666666777776666666652 344455555555555555
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK 197 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (527)
......++ ... ....+...|..++..+..
T Consensus 439 l~~Ia~~l---Pt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPYL---PTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhccC---CCC-CcccCchHHHHHHHHHHH
Confidence 44433222 111 111234456666655554
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=87.18 E-value=36 Score=34.40 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=16.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 232 WRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
-.|+...+++....+.. |..+-..+.+.+...|-.+
T Consensus 309 ~~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 309 FEGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp HTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred HccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccc
Confidence 36777777766654421 3334444555555555444
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.97 E-value=13 Score=29.16 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 373 EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.++.+++..+++.+.--.|.....-..-...++..|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 556666666666653322222222222334445666666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.90 E-value=0.91 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFH 65 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~ 65 (527)
..++..+..+|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.81 E-value=71 Score=37.41 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHH-HHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIH-KLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
..++.+-.+++.+.+|.-.+++-...... ....+.+..++. .|...++++...-+...-.. +...+. -+..
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~-~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~-qil~ 1458 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKE-KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQ-QILE 1458 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccch-hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHH-HHHH
Confidence 36777889999999999999984111111 112334444444 89999999998888775222 222333 3444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH-HHHHHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL-IKALCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 202 (527)
....|++..|...|+.+.+.+ ++....++.++......|.++.+....+-.... ..+....++.+ +.+--+.++++
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchh
Confidence 567899999999999999886 455777888888888889998888877666544 23333334433 34445667777
Q ss_pred HHHHHHH
Q 043284 203 GAIRVLD 209 (527)
Q Consensus 203 ~A~~~~~ 209 (527)
.....+.
T Consensus 1536 ~~e~~l~ 1542 (2382)
T KOG0890|consen 1536 LLESYLS 1542 (2382)
T ss_pred hhhhhhh
Confidence 7666655
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.8 Score=24.99 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34445555555555555555555443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.70 E-value=23 Score=31.80 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 154 TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
.+.-+..+.|+..+|.++|+.+.+...+-.-......|+.++....-+.....++.+.-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445566777777777777765522211122344566666666656555555554443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=8.3 Score=34.16 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN-VQRSVRSLNTLLNA 158 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~ 158 (527)
....+-.++.+.++++.|..+.+.+....|. ++.-+..-.-.|.+.|.+..|..=++..++.- -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE--DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455666778889999999999988887554 55556666777888899999988888887653 12334444444444
Q ss_pred H
Q 043284 159 L 159 (527)
Q Consensus 159 ~ 159 (527)
+
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 3
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.4 Score=24.09 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043284 466 SFSLLIEGLYESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (527)
++..++..|...|++++|.+.|+++.+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666666666666665543
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.15 E-value=11 Score=30.74 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCESA-----------ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (527)
..-|++.....|....++..+..+|...+ .+++|...|++..+. .|+...|+.-+.... +|
T Consensus 55 isK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------ka 126 (186)
T PF06552_consen 55 ISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KA 126 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------TH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hh
Confidence 33333333334444555555555554432 144555555555544 677777776666542 35
Q ss_pred HHHHHHHHHCC
Q 043284 449 IRILEEMLDKG 459 (527)
Q Consensus 449 ~~~~~~~~~~~ 459 (527)
-++..++.+.+
T Consensus 127 p~lh~e~~~~~ 137 (186)
T PF06552_consen 127 PELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=39 Score=32.55 Aligned_cols=68 Identities=12% Similarity=-0.007 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH-hcCCchHHHHHHHHhhhCCCC
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLA-RARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~ 110 (527)
++-.+..-+..+-+.+.+.+..++|..|++.+|. ++..|..-..... ...+++.|+.+|.+.++..|.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 5556666666666677789999999999888874 5556655444333 334489999999988887554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.70 E-value=1.6 Score=22.98 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFH 71 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 71 (527)
+..++..+...|+++.|...|+.+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4455666666666666666666665443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.65 E-value=34 Score=31.87 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhC-CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---------CCCCC
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF---------NVQRS 148 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 148 (527)
..+..+...|..+|+++.|.+.|.++..- -........|..++..-+-.|+|........+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46777888888889999988888885543 111224556777777777788887777666665543 13444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----CCC-ChhhHHHHHHHHHcCCChHHHHH-----HHHhcccCCCC
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK-----VVP-NVFTCNILIKALCKKDDVEGAIR-----VLDEMPSMGMV 217 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~A~~-----~~~~~~~~~~~ 217 (527)
...+..+.....+ .++.|.+.|-....... +.| |..+|.. +.+..-.++-+--+. .|+.+.+
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 5555555554444 66666665544332211 223 3444443 334433333222222 2333333
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHhHHHHHH
Q 043284 218 PNLVTHTTILGGYVWRGDIENAKRVFGDILDR-----GWVPDATTYTVLMD 263 (527)
Q Consensus 218 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 263 (527)
..+..+..+..-| .+++..++++++++... -+.|.+.+.-.+|+
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2344444454444 45788888888877654 23455555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.63 E-value=28 Score=30.84 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML-----DKGCFPNKTS 466 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 466 (527)
+++.....|...|.+.+|.++.++..... +.+...+-.++..+...||--.+.+.++++. +.|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34566677788888888888888877652 3456667777788888888777777777665 3466555444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.54 E-value=2.5 Score=23.10 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444455555555555555554443
|
... |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.40 E-value=2.2 Score=40.09 Aligned_cols=115 Identities=9% Similarity=0.031 Sum_probs=83.2
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
+....+..-+...+..+.++.|+.++.+++..+|+ ....|..-..++.+.+++..|+.=+..+.+..|. ....|.
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~ 76 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYV 76 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheee
Confidence 33445566777888899999999999999888774 3334555557788899999999888888886543 444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
.-..++.+.+.+.+|+..|+..... .|+.......+.-|-
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 5566777788888999999888875 566555555555443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.25 E-value=13 Score=26.51 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR 129 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 129 (527)
|..+-..+...+...|++++|.+.+-.+.+..+..-+...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55666666667777777777777776666653332233333444444443333
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.89 E-value=56 Score=33.67 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY---GLAGRPELAVKTFLRIEKFNVQRSVRSLN 153 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 153 (527)
+...+..|+..+.+.|++++....-..|.+..|. .+..|...+.-. ...+...++..+|++.+.. ..++..|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl--~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL--PPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHH
Confidence 4556777888888889888877777777765444 555666555443 3446777788888877754 23444454
Q ss_pred HHHHHHHh-------cCCHHHHHHHHHHhhhcCCCCCC--hhhHHHHH---HHHHcCCChHHHHHHHHhcccCCCCCCHH
Q 043284 154 TLLNALVQ-------NKRYDLVHLMFKNSRHKFKVVPN--VFTCNILI---KALCKKDDVEGAIRVLDEMPSMGMVPNLV 221 (527)
Q Consensus 154 ~l~~~~~~-------~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 221 (527)
..+..+.. .++++....+|.+.....|..-+ ...|.... ..|..+-..++.+.+|..-...+ .|..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhh
Confidence 44444433 35567777777777655443322 22333322 23444444456666666555443 2322
Q ss_pred HHHHHHHHHHh-------cCChHHHHHHH-------HHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 222 THTTILGGYVW-------RGDIENAKRVF-------GDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 222 ~~~~l~~~~~~-------~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
+-+.-+.-..+ ..+++.+.+-+ ...... ..+-...|..+++.+.+.|+.-....+++++...
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 22111111111 12223333222 222221 1223345666777777778777777777666543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.16 E-value=24 Score=30.25 Aligned_cols=92 Identities=13% Similarity=-0.012 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYG 125 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (527)
.-+.-|+...++..|+..+.+++...|. .+.-|..-+..+.+.++|+.+..--.+.++..|. .......+...+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N--~vk~h~flg~~~l 89 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN--LVKAHYFLGQWLL 89 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH--HHHHHHHHHHHHH
Confidence 3344455566777888877777766552 2345666677777777787777777777665332 2334445556666
Q ss_pred hcCChhHHHHHHHHHHh
Q 043284 126 LAGRPELAVKTFLRIEK 142 (527)
Q Consensus 126 ~~g~~~~A~~~~~~~~~ 142 (527)
....+++|+..+.+..+
T Consensus 90 ~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hhccccHHHHHHHHHHH
Confidence 77777777777776643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.84 E-value=29 Score=29.67 Aligned_cols=94 Identities=12% Similarity=0.251 Sum_probs=49.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 043284 365 TIIHWLCKE-GKIWEAKKLFDEFE---RGSIPSL---LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNM--- 434 (527)
Q Consensus 365 ~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--- 434 (527)
.+...|-.. .+++.|+..|+... .+...+. ..+.-+..--...+++.+|+++|++.....+..+..-|..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 56777777777762 1211111 2233333444566889999999999887655444333321
Q ss_pred HHH-HHHc--cCCHHHHHHHHHHHHHC
Q 043284 435 LIQ-GFCK--IGNAKEGIRILEEMLDK 458 (527)
Q Consensus 435 l~~-~~~~--~g~~~~A~~~~~~~~~~ 458 (527)
++. ++|. ..|.-.+...+++-.+.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 221 1222 24555566666666653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.37 E-value=1 Score=35.58 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--------~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--------NYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--------SS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--------ccCHHHHHHHHHhcc
Confidence 345555566666666666666655544556666666677766666566665554211 122233444444555
Q ss_pred ChHHHHHHHHh
Q 043284 200 DVEGAIRVLDE 210 (527)
Q Consensus 200 ~~~~A~~~~~~ 210 (527)
.++++.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 55555544444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=81.19 E-value=38 Score=29.88 Aligned_cols=89 Identities=6% Similarity=-0.093 Sum_probs=55.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc-
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK- 197 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 197 (527)
.-|.+++..|++.+++...-+.-+.--...+.+...-|-.|.+.+++..+.++-.......+ ..+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 44677888888888777665543321123345555666678888888887777776665422 1223346666655544
Q ss_pred ----CCChHHHHHHH
Q 043284 198 ----KDDVEGAIRVL 208 (527)
Q Consensus 198 ----~~~~~~A~~~~ 208 (527)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.26 E-value=10 Score=36.94 Aligned_cols=129 Identities=13% Similarity=-0.028 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 377 WEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
+.+..++..|.....|--.+.|...--.-..|+...|...+.........-.......|.....+.|-...|-.++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34445555554433333333333222223358888888888777643222223445667777778888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 457 DKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 457 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
... ...+.++..+++++....+.+.|++.|+.+.+..+.....-+.++.
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 654 3456678888899999999999999999999988877777666665
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=75 Score=32.64 Aligned_cols=318 Identities=10% Similarity=0.054 Sum_probs=160.1
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
+....+.|++..+.++...+.. .|..+ -..|..+... .....+++....+++-.. .+.....-......+.+.++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d-~pL~~-yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKD-YPLYP-YLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccC-CCcHh-HHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccC
Confidence 3444577888888887777643 33311 1112222221 112245544444444332 23333344445556667778
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHH--HH
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAK--RV 242 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~--~~ 242 (527)
++.....+.. .+.+...-.....+....|+.++|......+-..|. ........++..+.+.|...... +-
T Consensus 115 w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 115 WRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred HHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8877763311 133555556677788888988888777777655552 35667777888887766654432 33
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH---------CCCCCCHHHHHHHHHHH--HccCCHHHHHH
Q 043284 243 FGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED---------NGVEPNEVTYGVMIEAF--CKGKKSGEARN 311 (527)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~--~~~~~~~~a~~ 311 (527)
+..+...| +...-..+..... .+.....+.+..+.. ..+.++...-..++.++ ....+.+.|..
T Consensus 188 ~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 188 IRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 33334443 3333333333221 111111111111111 01112221111111122 23456677888
Q ss_pred HHHHHHHcC-CCCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 312 LLDDMLQRK-YVPSS--ALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 312 ~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
++....... ..+.. .+...+.......+...++...+....... .+......-+..-...++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 887765433 22111 122233322333322455666655543322 2344444555555678888888888888733
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 389 GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
.......-.-=+.+++...|+.++|..+|+.+.
T Consensus 341 ~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 341 EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 332233333345667667888888888888864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.8 bits (226), Expect = 1e-19
Identities = 24/280 (8%), Positives = 75/280 (26%), Gaps = 4/280 (1%)
Query: 175 SRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRG 234
+ P L++ K ++ + + +
Sbjct: 82 CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141
Query: 235 DIENAKRV---FGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEV 291
+ A + + + Y +M G+ + G + V V+ ++D G+ P+ +
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 292 TYGVMIEAFCK-GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKR 350
+Y ++ + + +G L+ M Q + ++ ++ ++
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 351 LLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAEL 410
+P +S ++ + + KL + + +A +
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSV 321
Query: 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450
+ ++ + K +
Sbjct: 322 EKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLE 361
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.9 bits (203), Expect = 8e-17
Identities = 41/335 (12%), Positives = 97/335 (28%), Gaps = 18/335 (5%)
Query: 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAV 97
W + L + + R Q L LQ+ +G+F + R +
Sbjct: 26 WAKILEKDKRTQQM-RMQRLKAKLQMPFQSGEF--------KALTRRLQVEPRLLSKQMA 76
Query: 98 ESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157
L +Q PE E +++ ++ + + + + L
Sbjct: 77 GCLEDCTRQAPE-SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 158 ALVQNKRYDLVH--LMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG 215
+ + L H L+ + + + + + + N ++ ++ + + VL + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 216 MVPNLVTHTTILGGYVWRG-DIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDA 274
+ P+L+++ L + D +R + G A VL+ + L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 275 VKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDL 334
KV P V ++ L + + + K + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL-----FEKQLHM 310
Query: 335 LCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHW 369
+ E ++ + + W
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW 345
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 1e-14
Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 5/167 (2%)
Query: 302 KGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA 361
+ A L D Q P +++ + ++ + +
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 362 ISSTIIHWLCKEGKIWEAKKLFDEFER----GSIPSLLTYNTLIAGMCESAELTEAGRLW 417
++ A L + +L YN ++ G E +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 418 DDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI-RILEEMLDKGCFPN 463
+ + G+ P++ +Y +Q + I R LE+M +G
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 2e-09
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 4/126 (3%)
Query: 378 EAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWD---DMVEKGVEPNVFTYNM 434
E + + +L A L +K + YN
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 435 LIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGN-EGEVGKVVSMATAS 493
++ G+ + G KE + +L + D G P+ S++ ++ + G + + + +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 494 GSVESD 499
G
Sbjct: 231 GLKLQA 236
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 6e-13
Identities = 74/500 (14%), Positives = 143/500 (28%), Gaps = 149/500 (29%)
Query: 54 QQNLDLALQIFHYAGK-----FHPNFSHNYDTYH------SII------HKLARARAFDA 96
++D Y K F F N+D SI+ H + A
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 97 VESLLTELKQNPEIKCGENLFITVIR-NYG-LAGR-------PELAVKTFL--------- 138
L L E + + V+R NY L P + + ++
Sbjct: 64 TLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 139 --RIEKFNVQRSVRSLNTLLNAL--VQNKRYDLVHLMF---KNSRHKFKVVPNVFTCNIL 191
K+NV R ++ L AL ++ + L+ + K T +
Sbjct: 123 NQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGK-------------TW--V 166
Query: 192 IKALCKKDDVE----GAI------RVLDEMPSMGMVPNLVTHTTILGGYVWRGD------ 235
+C V+ I + M+ L+ I + R D
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIK 224
Query: 236 --IENAK----RVFGD--------ILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281
I + + R+ +L +A + + K+ T +V D
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNA-FNLSCKILLTTRFKQVTD-- 279
Query: 282 EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY--VPSSALCCK----VIDLL 335
T + ++ E ++LL L + +P + ++
Sbjct: 280 ----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSII 333
Query: 336 CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395
E + D W NC I + ++ L E +K+FD S+
Sbjct: 334 AES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYRKMFDRL------SVF 381
Query: 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455
+ I L +W D+++ V +++ K +
Sbjct: 382 PPSAHI-----PTILLS--LIWFDVIKSDVM-------VVVNKLHKYS-----------L 416
Query: 456 LDKGCFPNKTSFSLLIEGLY 475
++K P +++ S+ +Y
Sbjct: 417 VEKQ--PKESTISIP--SIY 432
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 54/392 (13%), Positives = 127/392 (32%), Gaps = 85/392 (21%)
Query: 49 SMIFRQQNLDLAL-QIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELK-- 105
+++ Q L + + N + + + +L +++ + LL L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLV-LLNV 253
Query: 106 QNPEI------KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159
QN + C + L T R + A T + ++ ++ + + +LL
Sbjct: 254 QNAKAWNAFNLSC-KILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-----------------VE 202
+ + DL + + P + +I + +E
Sbjct: 311 LDCRPQDLPREVLTTN-------PRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 203 GAIRVLD--EM----PSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR-----GW 251
++ VL+ E + + P TIL +W I++ V + L +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 252 VPDATTYTVLMDGYIKL-----------GRLTDAVKVMDEMEDNGVEPNEV-TY-----G 294
P +T + + Y++L + D + + + + P + Y G
Sbjct: 421 -PKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 295 VMIEAFCKGKKSGEARNLLDDM--LQRKYVPSSALCCK---VIDLLCEEGKVEDACELWK 349
++ ++ R + D L++K S +++ L + + +K
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------LKFYK 531
Query: 350 RLLRKNCMPDNAISSTIIHWLCK-EGKIWEAK 380
+ N + + I+ +L K E + +K
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSK 563
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 13/216 (6%)
Query: 245 DILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMI-EAFCKG 303
D + P+ + + R V +D V+ T+ +M +
Sbjct: 55 DEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114
Query: 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAIS 363
+ A L + + + L + +++ A + K++ ++ D ++
Sbjct: 115 QNPDAALRTLHQGDSLECMAMTVQI------LLKLDRLDLARKELKKMQDQD--EDATLT 166
Query: 364 ---STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDM 420
+ + K+ +A +F E P+LL N A A + +
Sbjct: 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226
Query: 421 VEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456
++K + T L+ +G E L
Sbjct: 227 LDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQL 261
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 7/160 (4%)
Query: 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK 111
N D A + + A +D S H L +D V L +
Sbjct: 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVS-NHLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLM 171
+L++ + A I ++S L + L R+ V +
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 172 FKNSRHKFKVVPNVFTC-NILIKALCKKDDVEGAIRVLDE 210
P + + +L + + + ++
Sbjct: 328 TTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISND 364
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.35 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.29 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.29 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.29 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.22 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.06 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.04 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.95 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.89 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.89 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.81 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.72 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.71 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.71 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.68 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.63 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.62 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.61 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.6 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.46 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.41 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.34 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.14 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.11 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.04 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.03 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.99 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.98 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.89 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.38 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.96 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.85 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.69 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.5 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.26 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.21 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.8 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.75 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.4 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.35 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 95.3 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.53 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 94.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.9 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.88 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.51 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.49 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.52 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.78 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.49 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.61 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.72 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.32 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 87.84 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.75 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.21 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.95 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.4 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.94 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.53 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.38 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.61 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=333.59 Aligned_cols=450 Identities=11% Similarity=-0.005 Sum_probs=365.8
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+..++..+.+.|++++|+.+|++++... |+..++..++..+.+.|++++|..+|+++... +.+..++..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 155 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT----GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC----CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHH
Confidence 34457889999999999999999999997554 46678889999999999999999999988653 347788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF---------------NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN 184 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (527)
++.+|.+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|.+.|+++.... +.+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh
Confidence 999999999999999999853221 223357889999999999999999999999998762 112
Q ss_pred hhhHHHH--------------------------------------HHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 043284 185 VFTCNIL--------------------------------------IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTI 226 (527)
Q Consensus 185 ~~~~~~l--------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 226 (527)
...+..+ +..|.+.|++++|.++|+++.+. +++..+++.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 3333322 44556778888899999888775 4788888889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 043284 227 LGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKS 306 (527)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (527)
+..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999999999999888765 3377788888888899999999999998888653 44678888888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 307 GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
++|.++|+++.+... .+..++..++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988887543 357788888888999999999999999888775 346778888888899999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 043284 387 ERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK----GVEPN--VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC 460 (527)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 460 (527)
....+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 6666678888999999999999999999999888765 66777 6788888899999999999999999888764
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 461 FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
+.+..++..++.+|.+.|++++|.+.++++.+..|.+...+..+.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 336788888889999999999999999998888877766665544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=329.94 Aligned_cols=457 Identities=9% Similarity=0.000 Sum_probs=386.5
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
...|.+..+...+..+ | .++...|..++..+.+.|++++|..+|+++.... |+...+..++.+|.+.|+++
T Consensus 64 ~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----S--LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHH
T ss_pred cccCccCCCCCccccc----h--HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHH
Confidence 3456666666666544 1 2577889999999999999999999999998643 36678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--------------CCCCChhhHHHHHHHHHc
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF--------------KVVPNVFTCNILIKALCK 197 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~ 197 (527)
+|+.+|+++... +++..+++.++.+|.+.|++++|.++|+++.... +.+++..+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999998654 6889999999999999999999999999654331 223468899999999999
Q ss_pred CCChHHHHHHHHhcccCCCCCCHHHHHHH--------------------------------------HHHHHhcCChHHH
Q 043284 198 KDDVEGAIRVLDEMPSMGMVPNLVTHTTI--------------------------------------LGGYVWRGDIENA 239 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------------------------------~~~~~~~~~~~~a 239 (527)
.|++++|+++|++|.+.+.. +...+..+ +..|.+.|++++|
T Consensus 213 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99999999999999876522 33333333 4455678899999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 240 KRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
.++|+++.+. +++..+++.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999998876 5799999999999999999999999999999875 337889999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 320 KYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNT 399 (527)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (527)
. +.+..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++....+.+..+|+.
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 4 4478889999999999999999999999998865 3478899999999999999999999999997777789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK----GCFPN--KTSFSLLIEG 473 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 473 (527)
++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 9999999999999999999999863 447889999999999999999999999999875 66787 7899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHHHHHHHhhc
Q 043284 474 LYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGALDELLVKN 526 (527)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~l~~~ 526 (527)
|.+.|++++|.++++++.+..+.+...|..+...+. |++++|.+.++++++.+
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999998888888888887543 99999999999999864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-30 Score=241.24 Aligned_cols=382 Identities=13% Similarity=0.042 Sum_probs=232.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
++..+.+.|++++|++.++.+++..| .+...+..+...+...|++++|...++.+.+..|. +...|..+...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHH
Confidence 45667777888888888877776665 35667777777777778888888777777765332 56677777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+++... .+.+...+..+...+...|++++|.+
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 777777777777777654 445566777777777777777777777777654 12234455556666666677777777
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
.|+++.+.. +.+..+|..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|+..|++..+..
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 776666543 1235566666666666666666666666666553 2244555555555556666666666555555442
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 287 EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
+.+..++..+...+...|++++|.+.++++.+ .+ +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~-p~~~~~~~~l 277 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-----------------------------------LQ-PHFPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------TC-SSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------hC-CCCHHHHHHH
Confidence 11344444455555555555555555555444 32 1234445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAK 446 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 446 (527)
...+.+.|++++|...|+++....+.+..+++.++..+...|++++|...++++.+. .+.+..++..+...+.+.|+++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHH
Confidence 555555555555555555554444555566666666666666666666666666543 1223455666666666666666
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 043284 447 EGIRILEEMLDKGCFP-NKTSFSLLIEGLYESG 478 (527)
Q Consensus 447 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 478 (527)
+|...|+++++. .| +...+..++..+...|
T Consensus 357 ~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 357 EALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 666666666653 23 3445555555555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-29 Score=238.47 Aligned_cols=376 Identities=14% Similarity=0.043 Sum_probs=296.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
...+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|...++..... .+.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 445566677777777777766654 445556666666677777777777777766654 34456677777777777777
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|++.|+++.+.. +.+...|..+..++...|++++|.+.|+++++.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777776643 2245567777777778888888888887777764 22455666777777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+..++...|++++|...++++....+ .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 77663 235677888888888888888888888888876433 566778888888999999999999998888653 367
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043284 361 AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFC 440 (527)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 440 (527)
.++..+...+...|++++|...|+++....+.+..+|..++.++.+.|++++|...++++.+. .+.+..++..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Confidence 888899999999999999999999997777778999999999999999999999999999986 3557889999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
..|++++|...++++++.. +.+..++..++.++.+.|++++|.+.++++.+..|.....|..+..
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 9999999999999999853 3457789999999999999999999999999988877777776655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=240.96 Aligned_cols=202 Identities=16% Similarity=0.158 Sum_probs=124.3
Q ss_pred HHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC---------hHHH
Q 043284 135 KTFLRIEKFNVQRSVR-SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD---------VEGA 204 (527)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A 204 (527)
.+.+++.+.+....+. .++.+|.+|++.|++++|.++|++|... |+.||..+|++||.+|++.+. +++|
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3334444444333322 3455555555555555555555555554 555555555555555554332 4566
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 205 IRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 285 GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
|+.||..+|+.++.+|++.|+.++|.++|++|.+.+..|+..||+.++..+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777666666554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-27 Score=230.95 Aligned_cols=449 Identities=10% Similarity=0.006 Sum_probs=333.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+.+.|++++|+..|+++++..| +..++..++.++...|++++|...++++.+..|. +...+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 81 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHH
Confidence 356788899999999999999999988764 6889999999999999999999999999886543 6678899999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHH---HHHHcCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILI---KALCKKD 199 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 199 (527)
++...|++++|+..|+++.+.+ +++......++..+........+.+.+..+... +..|+...+.... .......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999999876 445555555555444433333333333222111 0011111111000 0000111
Q ss_pred ChHHHHHHHHhcccC------CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CCCHHh
Q 043284 200 DVEGAIRVLDEMPSM------GMVPNLVTHTTILGGYVW---RGDIENAKRVFGDILD-----RGW--------VPDATT 257 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~ 257 (527)
....+...+...... ..+.+...+......+.. .|++++|...++++.+ ... +.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111111111 001224455555555554 8999999999999988 311 223567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043284 258 YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCE 337 (527)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (527)
+..+..++...|++++|...++++.+.. |+...+..+...+...|++++|...++++...... +...+..+..++..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 7888899999999999999999998874 33888888999999999999999999999886433 56678888999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLW 417 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (527)
.|++++|...++++.+..+. +...+..+...+...|++++|...++.+....+.+...+..++..+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999987643 66788889999999999999999999996666678889999999999999999999999
Q ss_pred HHHHHcCCC-CC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043284 418 DDMVEKGVE-PN----VFTYNMLIQGFCK---IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 418 ~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (527)
+++.+.... ++ ...+..+...+.. .|++++|...++++++.. +.+..++..++.++.+.|++++|.+.+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 998865211 11 3378889999999 999999999999999853 33567888999999999999999999999
Q ss_pred HHhCCCCChhhHHHH
Q 043284 490 ATASGSVESDSWNFL 504 (527)
Q Consensus 490 ~~~~~~~~~~~~~~l 504 (527)
+.+..+.+...+..+
T Consensus 475 a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 475 SADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHCSSHHHHHHHH
T ss_pred HHHhccccHHHHHHH
Confidence 999988777666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=240.35 Aligned_cols=205 Identities=22% Similarity=0.244 Sum_probs=180.6
Q ss_pred HHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 043284 97 VESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR---------YD 166 (527)
Q Consensus 97 A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 166 (527)
+..+.+++.+. ..... ...+..++.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555543 22222 346788999999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+|.++|++|... |+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999887 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG 303 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (527)
.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-26 Score=224.63 Aligned_cols=440 Identities=7% Similarity=-0.051 Sum_probs=328.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
....+...+..+.+.|++++|+..|+++.+.. |+...+..++.++...|++++|++.++++.+.+ +.+..++..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 34578888999999999999999999999864 378889999999999999999999999999876 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.++...|++++|...|+++.... +++......++..+........+.+.+..+...+..|+...+..-..........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 99999999999999999988762 3344455555555544443444444333332222122221111111111111111
Q ss_pred HHHHHHHHHHHHCCC---------CCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CCCHH
Q 043284 237 ENAKRVFGDILDRGW---------VPDATTYTVLMDGYIK---LGRLTDAVKVMDEMED-----NGV--------EPNEV 291 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~ 291 (527)
.....+...+..... +.+...+......+.. .|++++|+.+|+++.+ ... +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111111 1224555555555554 8999999999999987 311 12356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLC 371 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (527)
.+..+...+...|++++|...++++.+.... ...+..+..++...|++++|...++.+....+ .+...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 7788889999999999999999999987544 77888899999999999999999999998753 46778889999999
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 043284 372 KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRI 451 (527)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 451 (527)
..|++++|...++++....+.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999977777788999999999999999999999999998762 33567888999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCChhhHHHHHHHH--HhchhhhHHHHHH
Q 043284 452 LEEMLDKGCF-PN----KTSFSLLIEGLYE---SGNEGEVGKVVSMATASGSVESDSWNFLLTRI--VSDLDSGAGALDE 521 (527)
Q Consensus 452 ~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~ 521 (527)
++++.+.... ++ ...+..++.++.+ .|++++|.+.++++....+.+...|..+.... .|+.+.|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999864211 11 3378899999999 99999999999999998887777777666633 3999999999999
Q ss_pred HHhhc
Q 043284 522 LLVKN 526 (527)
Q Consensus 522 ~l~~~ 526 (527)
+++.+
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-25 Score=217.58 Aligned_cols=444 Identities=10% Similarity=0.037 Sum_probs=335.6
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+.+.|++++|+..|+.+++..| .++.++..++.++...|++++|++.|+++.+..|. +...+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP---NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHH
Confidence 34567889999999999999999999998877 47889999999999999999999999999886544 67788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHHcCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK-VVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 199 (527)
..++...|++++|+..|+ ..... |+. ....+..+...+....|...++.+..... ..+........+..+....
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999996 33322 221 12234455556667888888888865411 1111122334455566677
Q ss_pred ChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-------HhHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLV-THTTILGGYVW--------RGDIENAKRVFGDILDRGWVPDA-------TTYTVLMD 263 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~ 263 (527)
+.+.+...+...... .+... ....+...+.. .|++++|..+++.+++.... +. .++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 777776666555443 22222 22333322222 25789999999999877422 32 34667778
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhH
Q 043284 264 GYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVED 343 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (527)
.+...|++++|...++++.+. .|+...+..+...+...|++++|.+.++++.+.... +..++..+..++...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 888999999999999999987 456888899999999999999999999999887543 67788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 344 ACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
|...++++.+..+. +...+..+...+...|++++|...++++....+.+...+..++..+...|++++|...++++.+.
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999987533 56788889999999999999999999997667778889999999999999999999999998764
Q ss_pred CC-----CCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 424 GV-----EPNVFTYNMLIQGFCKI----------GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 424 ~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
.. ......+......+... |++++|...|+++++.. +.+...+..++.++.+.|++++|.+.++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 21 11122244555677777 99999999999999853 3356789999999999999999999999
Q ss_pred HHHhCCCCChhhHH
Q 043284 489 MATASGSVESDSWN 502 (527)
Q Consensus 489 ~~~~~~~~~~~~~~ 502 (527)
++.+..+.+.....
T Consensus 487 ~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 487 DSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHC--CHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99998876555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=214.95 Aligned_cols=429 Identities=10% Similarity=0.006 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+.+.|++++|+..|+++.+..|. +...+..+..++...|++++|++.++++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 457888999999999999999999999987554 77889999999999999999999999999886 667889999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCC------CCCCHHHHHHHHHHHH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMG------MVPNLVTHTTILGGYV 231 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~ 231 (527)
++...|++++|...|+.+.. .|+. ....+..+...+....|...++.+.... ..|+.. .+..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 99999999999999974432 2222 2223445555666788999999887641 223333 334455
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHH
Q 043284 232 WRGDIENAKRVFGDILDRGWVPDAT-TYTVLMDGYI--------KLGRLTDAVKVMDEMEDNGVEPN-------EVTYGV 295 (527)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~ 295 (527)
...+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHH
Confidence 566666655544333222 12211 2222222222 225899999999999876322 2 235667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 043284 296 MIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK 375 (527)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 375 (527)
+...+...|++++|...+++..+.. |+...+..+..++...|+++.|...++++.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 7788889999999999999999864 447788889999999999999999999999876 3477889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 043284 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEM 455 (527)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (527)
+++|...|+++....+.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999976667788899999999999999999999999999873 345678899999999999999999999999
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCChhhHHHHHHHHH--hchhhhHHH
Q 043284 456 LDKG-----CFPNKTSFSLLIEGLYES----------GNEGEVGKVVSMATASGSVESDSWNFLLTRIV--SDLDSGAGA 518 (527)
Q Consensus 456 ~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~ 518 (527)
++.. .......+...+.++.+. |++++|...++++.+..+.+...|..+..... |+.+.|.+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 8532 111223345566778888 99999999999999998877777777666433 999999999
Q ss_pred HHHHHhhc
Q 043284 519 LDELLVKN 526 (527)
Q Consensus 519 ~~~~l~~~ 526 (527)
++++++.+
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-24 Score=209.10 Aligned_cols=303 Identities=17% Similarity=0.095 Sum_probs=195.2
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.++..+..++..+.+.|++++|+..|+.+++..| .+..++..++.++...|++++|...|+++.+..|. +...+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHH
Confidence 3455677888888889999999999988877666 46778888888888889999999999888876443 567788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSV---RSLNTLL------------NALVQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
.++.++...|++++|++.|+++.+.+ +.+. ..+..++ ..+...|++++|...|+++... .+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 88888888899999999998888764 3333 4554443 3366667777777777766654 233
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHH--
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVL-- 261 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 261 (527)
+...+..++.+|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 55566666667777777777777776665543 2345666666666667777777777776666542 2233333333
Q ss_pred ----------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 043284 262 ----------MDGYIKLGRLTDAVKVMDEMEDNGVEPN-----EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSA 326 (527)
Q Consensus 262 ----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (527)
...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH
Confidence 45555556666666666555543 222 2244555555555555555555555555432 12344
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRK 354 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (527)
.+..+..+|...|++++|...++++.+.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-23 Score=203.23 Aligned_cols=328 Identities=13% Similarity=0.035 Sum_probs=179.4
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHH
Q 043284 59 LALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFL 138 (527)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 138 (527)
.+...+..++..+| .+...+..++..+.+.|++++|+.+|+++.+..|. +...+..++.++...|++++|+..|+
T Consensus 10 ~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQSM---ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -------------C---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccccH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444544333 35566666777777777777777777766654332 45566666677777777777777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-h---hhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 139 RIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN-V---FTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
++.+.+ +.+..++..++.++...|++++|...|+++... .|+ . ..+..++..+..
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~----------------- 143 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEM----------------- 143 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHH-----------------
Confidence 766654 445666666666777777777777777666643 232 2 344444333110
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043284 215 GMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYG 294 (527)
Q Consensus 215 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (527)
..+..+...+...|++++|+..|+++.+.. +.+...+..++.+|.+.|++++|+.+|+++.+.. +.+..++.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 011222334555666666666666665543 2355556666666666666666666666665542 23455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH------------HHHHHhcCCHhHHHHHHHHHHhCCCCCC---
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKV------------IDLLCEEGKVEDACELWKRLLRKNCMPD--- 359 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 359 (527)
.+...|...|++++|...|+++...... +...+..+ +..+...|++++|...++.+.+..+. +
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~ 293 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEY 293 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHH
Confidence 6666666666666666666666554221 22222222 45555666666666666666554321 2
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043284 360 -NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE 422 (527)
Q Consensus 360 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (527)
...+..+..++.+.|++++|...++++....+.+...|..++.+|...|++++|...++++.+
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 224455555566666666666666665443444555666666666666666666666666654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-19 Score=174.43 Aligned_cols=350 Identities=12% Similarity=0.042 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCChh
Q 043284 115 NLFITVIRNYGL----AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 115 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
..+..+...|.. .+++++|+..|++..+. .+..++..+...|.. .+++++|..+|++.... .+..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~ 112 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQ 112 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHH
Confidence 333444444444 44444444444444442 233344444444444 44445555544444332 1333
Q ss_pred hHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHhH
Q 043284 187 TCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW----RGDIENAKRVFGDILDRGWVPDATTY 258 (527)
Q Consensus 187 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (527)
.+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444444444 445555555555544433 33444444444444 445555555555555443 34444
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 043284 259 TVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK----GKKSGEARNLLDDMLQRKYVPSSALCCK 330 (527)
Q Consensus 259 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (527)
..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445555544 455555555555555432 33444444444443 455555555555554432 2333444
Q ss_pred HHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 331 VIDLLCE----EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE-----GKIWEAKKLFDEFERGSIPSLLTYNTLI 401 (527)
Q Consensus 331 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (527)
+...+.. .++.++|...+++..+.+ +...+..+...|... +++++|...|++.... .+...+..+.
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 335 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLG 335 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 4444444 455555555555555443 333444455555544 5566666666555332 2334455555
Q ss_pred HHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 402 AGMCESA---ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 402 ~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 474 (527)
..|...| ++++|+++|++..+.| +...+..+...|.. .+++++|..+|+++.+.| +...+..|+..|
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y 409 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555434 5556666666655542 44555555555555 556666666666666543 344555556556
Q ss_pred Hh----cCChhHHHHHHHHHHhCC
Q 043284 475 YE----SGNEGEVGKVVSMATASG 494 (527)
Q Consensus 475 ~~----~g~~~~A~~~~~~~~~~~ 494 (527)
.+ .++.++|.+.|+++.+.+
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55 566666666666665555
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-20 Score=176.03 Aligned_cols=323 Identities=15% Similarity=0.066 Sum_probs=165.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|+..|+.+++..| .+..++..++..+...|++++|...|+++.+..|. +...+..+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 80 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHHH
Confidence 44556666666666666666666665555 24556666666666666666666666666654332 44556666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQ---RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
+...|++++|+..++++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 666666666666666666543 1 12223322211100 0012223445555566
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|++.++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666555443 1244555555556666666666666666655543 33455555566666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
..+... .+...+..+... . ...........+...|++++|...++++.+..+. +.
T Consensus 214 a~~~~~-~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 214 CLKLDQ-DHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHCT-TCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHhhCc-cchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 554421 112211111000 0 0001112234445555555555555555544322 22
Q ss_pred ----hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 361 ----AISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 361 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
..+..+..++...|++++|...+++.....+.+...+..++..+...|++++|...|+++.+.
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 112334455555566666666665554444445555556666666666666666666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-20 Score=175.42 Aligned_cols=327 Identities=13% Similarity=0.039 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILG 228 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 228 (527)
+..+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345556666666666777777666666654 22345566666666666666666666666665543 124455666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 043284 229 GYVWRGDIENAKRVFGDILDRGWV--PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKS 306 (527)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (527)
++...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666666654210 12223322211000 00112224555666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 307 GEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
++|.+.++++.+... .+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++.
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666665432 245556666666667777777777777666654 335566666667777777777777777776
Q ss_pred hcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHH
Q 043284 387 ERGSIPSLLTYN------------TLIAGMCESAELTEAGRLWDDMVEKGVEPN-V----FTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 387 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 449 (527)
....+.+...+. .++..+...|++++|...++++.+. .|+ . ..+..+..++...|++++|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 444444444433 3366788999999999999999876 333 2 23455778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 450 RILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
..++++++.. +.+..++..++.++.+.|++++|.+.++++.+..|.+...+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999853 3367889999999999999999999999999988776666665544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-19 Score=176.83 Aligned_cols=421 Identities=13% Similarity=0.038 Sum_probs=217.5
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 64 FHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
|+.+++.+| .+..+|..++.. .+.|++++|+.+|+++.+..|. +...|...+..+.+.|++++|.++|++++..
T Consensus 2 le~al~~~P---~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEENP---YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHCT---TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhCC---CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 344444444 355666666663 5566666777777666665333 5556666666666666777777777666654
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHhhhcCCCCC-ChhhHHHHHHHHHc---------CCChHHHHHHH
Q 043284 144 NVQRSVRSLNTLLNAL-VQNKRYDLVHL----MFKNSRHKFKVVP-NVFTCNILIKALCK---------KDDVEGAIRVL 208 (527)
Q Consensus 144 ~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~ 208 (527)
. |+...|...+... ...|+.+.|.+ +|+......|..| +...|...+..... .|+++.|..+|
T Consensus 76 ~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 V--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred C--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 3 4555555555322 23455554443 5555544433332 34455555554433 46666777777
Q ss_pred HhcccCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHH------HHCC---CCCC--------HHhH
Q 043284 209 DEMPSMGMVPNLVTHTTILGGY-------------VWRGDIENAKRVFGDI------LDRG---WVPD--------ATTY 258 (527)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~ 258 (527)
++.++.........|....... .+.+++..|..++... .+.. ++|+ ...|
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 7666521000012222211110 0223445555544442 1111 1222 1233
Q ss_pred HHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHH
Q 043284 259 TVLMDGYIKL----GRL----TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK-------GKKSG-------EARNLLDDM 316 (527)
Q Consensus 259 ~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~ 316 (527)
...+...... ++. +++..+|+++.... +.+...|..++..+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 3333222221 122 25555666665542 2245566666555553 46654 666666666
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHH
Q 043284 317 LQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPD-NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLL 395 (527)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (527)
.+.-.+.+...+..++..+.+.|++++|..+|+++.+..+. + ...|...+..+.+.|++++|..+|++.....+.+..
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 54212224555566666666666666666666666664321 2 235555666666666666666666666443333333
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHH
Q 043284 396 TYNTLIAG-MCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC-FPN--KTSFSLLI 471 (527)
Q Consensus 396 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~ 471 (527)
.|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33322222 224566666666666666541 22355666666666666666666666666665421 121 23555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 043284 472 EGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
......|+.+.+.++.+++.+..|
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 556666666666666666655543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-18 Score=169.16 Aligned_cols=352 Identities=10% Similarity=-0.012 Sum_probs=290.1
Q ss_pred CHHHHHHHHHHHHh----cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCC
Q 043284 77 NYDTYHSIIHKLAR----ARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL----AGRPELAVKTFLRIEKFNVQRS 148 (527)
Q Consensus 77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 148 (527)
++.++..+...+.. .+++++|..+|+++.+. + +...+..+...|.. .+++++|++.|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 67788888888887 78999999999988874 3 56677788888888 889999999999988754 5
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCH
Q 043284 149 VRSLNTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNL 220 (527)
Q Consensus 149 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~ 220 (527)
...+..+...|.. .+++++|..+|++.... .+...+..+...|.. .+++++|++.|++..+.| +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 6777778888887 78999999999988765 256677778888877 788999999999988864 67
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 043284 221 VTHTTILGGYVW----RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVT 292 (527)
Q Consensus 221 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 292 (527)
..+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 788888888887 889999999999998875 56777788888876 789999999999988764 5667
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCHhhH
Q 043284 293 YGVMIEAFCK----GKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE-----GKVEDACELWKRLLRKNCMPDNAIS 363 (527)
Q Consensus 293 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (527)
+..+...|.. .+++++|.+.|++..+.+ +...+..+...+... +++++|...+++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 7777777777 889999999999988764 456667778888877 89999999999998876 45667
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043284 364 STIIHWLCKEG---KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLI 436 (527)
Q Consensus 364 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 436 (527)
..+...|...| ++++|...|++.... .+...+..+...|.. .+++++|...|++..+.| +...+..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 77888887766 788999999998543 467888889999988 899999999999998875 567788888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 043284 437 QGFCK----IGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 437 ~~~~~----~g~~~~A~~~~~~~~~~~ 459 (527)
..|.. .+++++|..+|+++.+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88887 899999999999999876
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-19 Score=174.96 Aligned_cols=414 Identities=13% Similarity=0.085 Sum_probs=302.1
Q ss_pred HHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 101 LTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
|++..+..|. +...|..++.. .+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|++....
T Consensus 2 le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 3444443343 77889988884 78999999999999999874 677889999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHH-HcCCChHHHHH----HHHhcccC-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHH
Q 043284 181 VVPNVFTCNILIKAL-CKKDDVEGAIR----VLDEMPSM-GMVP-NLVTHTTILGGYVW---------RGDIENAKRVFG 244 (527)
Q Consensus 181 ~~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~ 244 (527)
.|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+
T Consensus 76 -~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 46877887777533 35677777665 67665542 4333 56677777776554 688999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCCC--------HHHHH
Q 043284 245 DILDRGWVPDATTYTVLMDGY-------------IKLGRLTDAVKVMDEME------DNG---VEPN--------EVTYG 294 (527)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~ 294 (527)
+.++.........|....... ...++++.|..++.+.. +.. ++|+ ...|.
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 999841111123443332211 12356777877776632 221 2333 24555
Q ss_pred HHHHHHHcc----CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCHh-------HHHHHHHHHH
Q 043284 295 VMIEAFCKG----KKS----GEARNLLDDMLQRKYVPSSALCCKVIDLLCE-------EGKVE-------DACELWKRLL 352 (527)
Q Consensus 295 ~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~ 352 (527)
..+...... ++. ..+..+|++.+...+ .+...|...+..+.+ .|+++ +|..++++..
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 555433322 232 377888999888633 367778777777775 68887 8999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 043284 353 RKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSL-LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-VF 430 (527)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~ 430 (527)
+.-.+.+...+..++..+.+.|++++|..+|+++....+.+. ..|..++..+.+.|++++|..+|++..+. .|+ ..
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~ 391 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHH 391 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTH
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchH
Confidence 732344688888999999999999999999999976555554 58999999999999999999999999875 333 33
Q ss_pred HHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChh----hHHHHH
Q 043284 431 TYNMLIQG-FCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESD----SWNFLL 505 (527)
Q Consensus 431 ~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ll 505 (527)
.|...+.. +...|+.++|..+|+++++.. +.+...+..++..+.+.|+.++|+.+|+++....+.++. .|...+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33333222 336899999999999999753 235788999999999999999999999999998754444 787766
Q ss_pred H--HHHhchhhhHHHHHHHHhh
Q 043284 506 T--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 506 ~--~~~~~~~~a~~~~~~~l~~ 525 (527)
. ..+|+.+.+.++.+++++.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6 3349999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-20 Score=169.34 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=219.1
Q ss_pred CCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhH
Q 043284 38 WPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLF 117 (527)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (527)
+.++..+..++..+...|++++|+.+|+.+++..|. +...+..++..+...|++++|..+++++.+..|. +...+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHH
Confidence 345677888999999999999999999999887774 4457777788888999999999999999886443 56788
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 118 ITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 118 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
..+...+...| ++++|++.|++..+.. +.+..++..+...+...|++++|...|++.... .+.+...+..+...+.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHH
Confidence 88888999999 8999999999998875 456778888899999999999999999988876 2334566777888888
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHhHHHHHHHHHhc
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG--------WVPDATTYTVLMDGYIKL 268 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 268 (527)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 8888888888888887764 2356778888888888888888888888877641 122345777777777788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043284 269 GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLL 335 (527)
Q Consensus 269 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (527)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..++
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 88888888887777653 23556677777777777777777777777666432 2445555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-19 Score=164.97 Aligned_cols=284 Identities=9% Similarity=-0.062 Sum_probs=151.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++... .+.+...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 3344555555555566666666666555543 334444445555555556666666666555543 2223445555555
Q ss_pred HHHcCC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 194 ALCKKD-DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 194 ~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
.+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 5666666666555443 1234455556666666666666666666665543 223444555556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--------CCCHHhHHHHHHHHHhcCCHhHH
Q 043284 273 DAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY--------VPSSALCCKVIDLLCEEGKVEDA 344 (527)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 344 (527)
+|...++++.+.. +.+...+..+...+...|++++|...+++..+... ......+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666665543 22445555555666666666666666655544210 11233444555555555555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 345 CELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGM 404 (527)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (527)
...++++.+..+ .+...+..+..++...|++++|...|+++....+.+...+..+..++
T Consensus 256 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 555555554432 23444455555555555555555555555444444555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-20 Score=172.48 Aligned_cols=292 Identities=14% Similarity=0.069 Sum_probs=205.9
Q ss_pred HcCCChHHHHH-HHHhcccCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 043284 196 CKKDDVEGAIR-VLDEMPSMGMV---PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRL 271 (527)
Q Consensus 196 ~~~~~~~~A~~-~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (527)
...|++++|++ .|++....... .+...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777877 77766544211 134556777778888888888888888888764 34667777888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH--------------HHHHHHh
Q 043284 272 TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCK--------------VIDLLCE 337 (527)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~ 337 (527)
++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.............. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877764 33667777888888888888888888888877543321111111 1233337
Q ss_pred cCCHhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMP-DNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
.|++++|...++++.+..+.. +..++..+...+...|++++|...|+++....+.+...|..++..+...|++++|...
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888888888765332 5677888888888888888888888888665666788888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhHHHHH
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP----------NKTSFSLLIEGLYESGNEGEVGKV 486 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~ 486 (527)
++++.+.. +.+..++..+..++.+.|++++|...|+++++..... ...++..++.++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88888752 3356778888888888888888888888887532110 156788888888888888888887
Q ss_pred HHHH
Q 043284 487 VSMA 490 (527)
Q Consensus 487 ~~~~ 490 (527)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-20 Score=171.04 Aligned_cols=307 Identities=10% Similarity=-0.039 Sum_probs=158.6
Q ss_pred HHhcCChhHHHH-HHHHhcccCCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcC
Q 043284 51 IFRQQNLDLALQ-IFHYAGKFHPNFSH-NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAG 128 (527)
Q Consensus 51 ~~~~~~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 128 (527)
+...|++++|+. .|+.+++..|..+. +...+..++..+...|++++|...|+++.+..|. +...+..+..++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCc
Confidence 344577777777 77777665554321 2445677777777777888888877777775433 5566777777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043284 129 RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVL 208 (527)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 208 (527)
++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+++..... .+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~-------~~----- 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEG-------AG----- 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHH-------hh-----
Confidence 7777877777777765 45667777777777777777777777777765421 112111111000 00
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043284 209 DEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP-DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE 287 (527)
Q Consensus 209 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (527)
.. .+ ...+..+. .+...|++++|...++++++..... +..++..+..++...|++++|+..|+++.+.. +
T Consensus 178 --~~----~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 178 --GA----GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp ---------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred --hh----cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00 00 00000111 1224455555555555555442111 24445555555555555555555555554432 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---------
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP--------- 358 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 358 (527)
.+...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...++++.+..+..
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 2344555555555555555555555555554321 234445555555555555555555555554432111
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 043284 359 -DNAISSTIIHWLCKEGKIWEAKKLFD 384 (527)
Q Consensus 359 -~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (527)
...++..+..++...|++++|..++.
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14455555666666666666655554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-17 Score=165.34 Aligned_cols=387 Identities=11% Similarity=0.028 Sum_probs=295.4
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+|.-....+..|...|.+.+|++++++++.....+..+...-+.++....+. +..+..++.+++... + ...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----d---~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----D---APD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----c---HHH
Confidence 3344456888899999999999999999743322445556666677777776 567777777766532 1 345
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
++..+...|.+++|..+|++.. ......+.+ +...+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCC
Confidence 7888899999999999999963 122222223 227789999999998663 5778999999999999
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMD 279 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 279 (527)
++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f-- 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF-- 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH--
Confidence 999999999774 378889999999999999999999999888764 3433444589999999998854433
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 043284 280 EMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPD 359 (527)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (527)
.+ .++...|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++. .+
T Consensus 1190 --I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1190 --IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred --Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 22 456777888999999999999999999985 37888999999999999999999987 26
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043284 360 NAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGF 439 (527)
Q Consensus 360 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 439 (527)
..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|..+...+
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 688899999999999999998877653 2466778899999999999999999998887442 22344566666666
Q ss_pred Hc--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 440 CK--IGNAKEGIRILEEMLDKGCFP------NKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 440 ~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
++ -++..++.++|..-.. ++| +...|..+...|.+.|+++.|...+
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 54 3455556666554332 333 4566888999999999999998433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=170.12 Aligned_cols=236 Identities=11% Similarity=-0.000 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+..++..+.+.|++++|+..|+.+++..| .+..++..++..+...|++++|+..|+++.+..|. +...+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHH
Confidence 445566777777777777777777777776665 35667777777777777777777777777765332 4566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH----------HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSL----------NTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCN 189 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (527)
++.++...|++++|++.|+++.+.. +.+...+ ..+...+...|++++|...|+++.......++..++.
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 7777777777777777777776643 1111112 2234555555556666666655555421111344555
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG 269 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (527)
.+...+...|++++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++++.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 55555555555555555555555432 1234455555555555555555555555555442 223445555555555555
Q ss_pred ChhHHHHHHHHHHH
Q 043284 270 RLTDAVKVMDEMED 283 (527)
Q Consensus 270 ~~~~a~~~~~~~~~ 283 (527)
++++|...|+++.+
T Consensus 296 ~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 296 AYREAVSNFLTALS 309 (365)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=167.06 Aligned_cols=386 Identities=11% Similarity=-0.052 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccC------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-----CC
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFH------PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-----PE 109 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~ 109 (527)
...|+.++.++...|++++|++.|+++++.. ...+....+|..++.+|...|++++|...++++.+. .+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4457889999999999999999998886531 112235668889999999999999999998887653 11
Q ss_pred C-CcChhhHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 110 I-KCGENLFITVIRNYGLA--GRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL---VQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 110 ~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
. .....++.....++... +++++|++.|++..+.. |.++..+..+..++ ...++.++|++.+++.... .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1 11344565555555543 56889999999988875 45566666555543 4457778888888887765 233
Q ss_pred ChhhHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 043284 184 NVFTCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT 259 (527)
Q Consensus 184 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (527)
+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...++++++.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45555555544443 467788888888877654 3366778888888888999999999988888764 33566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.+..+|...+.... ... . ..........+..+.|...+++..+.+.. +...+..+..++...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 66665543211100 000 0 00000001122345666666666654322 3445556666777777
Q ss_pred CHhHHHHHHHHHHhCCCCCCHh--hHHHHHH-HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNA--ISSTIIH-WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
++++|+..|+++......+... .+..+.. .....|++++|+..|++.....+.+.... +....+.++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~ 418 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKI 418 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHH
Confidence 7777777777766654332211 1112221 22355677777777776644333322111 112333444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG 459 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (527)
+++..+.. +.+..+|..+...|...|++++|++.|+++++.+
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55544432 3345677777777777777777777777777643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-19 Score=162.54 Aligned_cols=381 Identities=12% Similarity=0.056 Sum_probs=171.1
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR 129 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 129 (527)
.+.+.|++++|.++++++ +.+.+|..++.++.+.|++++|++.|.+.. +...|..++..+...|+
T Consensus 12 ll~~~~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHHHHhCCC
Confidence 344678899999999988 233599999999999999999999997642 45578888999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLD 209 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 209 (527)
+++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|.
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999988777764 4557778889999999999999887773 3667799999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043284 210 EMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPN 289 (527)
Q Consensus 210 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 289 (527)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 76 47889999999999999999999987 27889999999999999999996655442 234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--CCHhHHHHHHHHHHhCCCCC------CHh
Q 043284 290 EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEE--GKVEDACELWKRLLRKNCMP------DNA 361 (527)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~ 361 (527)
......++..|.+.|.+++|..+++..+... +.....|+.+..++++- ++..+.++.|.. +.++++ +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445568888999999999999999988765 44567777777777664 333444444432 112222 355
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERG------------SIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV 429 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 429 (527)
.|..++..|...++++.|....-.-... ...+...|-..+..|... .+..--.++.-+ ...+.+
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l-~~~ld~-- 359 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVL-SPRLDH-- 359 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHH-GGGCCH--
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHH-HhccCc--
Confidence 6778888888888888876644332111 223455555555555421 111111222222 111221
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVS 488 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (527)
+..+..+.+.|...-+..++......+ +..+=.++-..|...++++.-+.-++
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 233444556666666666665555432 33444455566677777766555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=166.74 Aligned_cols=268 Identities=12% Similarity=0.016 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIE 298 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (527)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456677777777777777777777777664 3366777777777777777777777777777653 235677777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC---------CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHH
Q 043284 299 AFCKGKKSGEARNLLDDMLQRKYV---------PSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM-PDNAISSTIIH 368 (527)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 368 (527)
+|...|++++|...++++.+.... .....+..+..++...|++++|...++++.+..+. .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777778888887777777664211 01122334567788888999999999988887533 16778888888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 369 WLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 448 (527)
.+...|++++|...|+++....+.+..+|..++.+|...|++++|+..|+++.+.. +.+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999866677788899999999999999999999999988762 33477888888999999999999
Q ss_pred HHHHHHHHHCCCC---C--------CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043284 449 IRILEEMLDKGCF---P--------NKTSFSLLIEGLYESGNEGEVGKVVSM 489 (527)
Q Consensus 449 ~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (527)
...|+++++.... + +...+..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998853200 0 246788888899999999888877665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-16 Score=156.64 Aligned_cols=320 Identities=13% Similarity=0.122 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
......++..+...|.+++|..+|++.. ....+...+ +...+++++|.++.+++. ++.+|..+
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VL---ie~i~nldrAiE~Aervn-------~p~vWsqL 1111 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFD-------VNTSAVQVL---IEHIGNLDRAYEFAERCN-------EPAVWSQL 1111 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHH---HHHHhhHHHHHHHHHhcC-------CHHHHHHH
Confidence 3446678999999999999999999882 122233333 236788999999998762 46789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|....+. .+++...+.++.+|.+.++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcC
Confidence 99999999999999999663 56778888999999999999999999887765 2444445568889999998
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++..... + .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88644443 2 256677888999999999999999999885 3788899999999999999999987
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN 360 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (527)
.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....+ +-..
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~ 1314 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHM 1314 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHh
Confidence 63 6677887777887788877777765532 2245556677777788888888888887776554 3344
Q ss_pred hhHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHH
Q 043284 361 AISSTIIHWLCKE--GKIWEAKKLFDEFERGSI-----PSLLTYNTLIAGMCESAELTEAG 414 (527)
Q Consensus 361 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 414 (527)
..|..+...|++. ++..++.+.|..-....+ .+...|..++..|.+.|+++.|.
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5555555555543 233333333332211111 24556777777777777777776
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=160.24 Aligned_cols=235 Identities=9% Similarity=-0.038 Sum_probs=145.6
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.+...+..++..+...|++++|+.+|+.+++..| .+..++..++..+...|++++|...++++.+..|. +...+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~ 93 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHA 93 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--CHHHHH
Confidence 3556778899999999999999999999988776 37788999999999999999999999999886443 667888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL--------------LN-ALVQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
.+...+...|++++|++.++++.+.. +.+...+..+ .. .+...|++++|...++++... .+.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~ 170 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPN 170 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCC
Confidence 88999999999999999999998764 3333333333 11 234444555555555555443 122
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMD 263 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (527)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34444445555555555555555555544432 1233444444444555555555555555444432 223444444444
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 043284 264 GYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 264 ~~~~~g~~~~a~~~~~~~~~ 283 (527)
++...|++++|.+.++++.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 44444555555544444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-16 Score=153.46 Aligned_cols=384 Identities=10% Similarity=-0.010 Sum_probs=222.4
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKF--------NVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF--- 179 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 179 (527)
......|+.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...+++.....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567778888888888888888888776542 112345678888888999999999988888765321
Q ss_pred C--CC-CChhhHHHHHHHHHc--CCChHHHHHHHHhcccCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCC
Q 043284 180 K--VV-PNVFTCNILIKALCK--KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGG---YVWRGDIENAKRVFGDILDRGW 251 (527)
Q Consensus 180 ~--~~-~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 251 (527)
. .. ....++..+..++.. .+++++|++.|++..+... -+...+..+..+ +...++.++|++.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 123455555555544 4568899999998877542 234445444444 345677788888888888764
Q ss_pred CCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 043284 252 VPDATTYTVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSAL 327 (527)
Q Consensus 252 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (527)
+.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3355666666555544 457788888888887764 346677888888888899999999999888876433 4555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES 407 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (527)
+..+..+|...+.... ... . ..........+.++.|...+++.....+.+...+..+...|...
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 6666555533211100 000 0 00000111122356666777766555555666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVF--TYNMLIQ-GFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
|++++|+..|++..+....+... .+..+.. .....|++++|+..|+++++. .|+..... +..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 77777777777777653222211 1222222 234567777777777777763 34432221 1223445
Q ss_pred HHHHHHHhCCCCChhhHHHHHHH--HHhchhhhHHHHHHHHhh
Q 043284 485 KVVSMATASGSVESDSWNFLLTR--IVSDLDSGAGALDELLVK 525 (527)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~a~~~~~~~l~~ 525 (527)
+++++.....|.+..+|..+... ..|++++|.+.++++++.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55666666666666666655542 237777777777777764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-18 Score=155.92 Aligned_cols=283 Identities=13% Similarity=0.109 Sum_probs=136.5
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 89 ARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLV 168 (527)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (527)
.+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 366889999999999832 348999999999999999999999653 5667899999999999999999
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 169 HLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 81 i~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 9988777664 4567889999999999999999988885 267789999999999999999999999976
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 043284 249 RGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALC 328 (527)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (527)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 47899999999999999999999998 27899999999999999999996654432 2334445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC------CCHHHHHHH
Q 043284 329 CKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERG--SI------PSLLTYNTL 400 (527)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~------~~~~~~~~l 400 (527)
..++..|.+.|.+++|..+++...... +-....|..+..+|++- .+++..+.++..... .+ .+...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 568899999999999999999998776 55677788887777654 455555555544211 11 246679999
Q ss_pred HHHHHhcCCHHHHHHH
Q 043284 401 IAGMCESAELTEAGRL 416 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~ 416 (527)
...|...++++.|...
T Consensus 289 ~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 289 VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhchHHHHHHH
Confidence 9999999999988763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=156.10 Aligned_cols=233 Identities=8% Similarity=-0.007 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|..+|+++.+..|. +...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 346777888888889999999999888875443 66778888888888999999999998888875 566778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHH--------------HH-HHHcCCChHHHHHHHHhcccCCCCCCHHH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNIL--------------IK-ALCKKDDVEGAIRVLDEMPSMGMVPNLVT 222 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 222 (527)
.+...|++++|...++++.... +.+...+..+ .. .+...|++++|.+.++++.+... .+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHH
Confidence 8888899999998888887651 2223333332 11 23444455555555555444321 13444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK 302 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (527)
+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4444555555555555555555544432 2234444444444555555555555554444432 1133444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 043284 303 GKKSGEARNLLDDMLQ 318 (527)
Q Consensus 303 ~~~~~~a~~~~~~~~~ 318 (527)
.|++++|.+.+++...
T Consensus 253 ~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-17 Score=146.12 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE-GIRIL 452 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~ 452 (527)
|++++|..+|+++....+.+...++.++.++...|++++|...|+++.+.. +.+..++..++..+...|+.++ +.+++
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444444444433333344444444444444444444444444444331 1123334444444444444432 23444
Q ss_pred HHHHH
Q 043284 453 EEMLD 457 (527)
Q Consensus 453 ~~~~~ 457 (527)
+++++
T Consensus 259 ~~~~~ 263 (291)
T 3mkr_A 259 SQLKD 263 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-16 Score=143.53 Aligned_cols=260 Identities=12% Similarity=0.099 Sum_probs=184.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 043284 230 YVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEA 309 (527)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (527)
....|++..|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456777777776665443321111234445566777777777777655431 244566667777777777777777
Q ss_pred HHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 043284 310 RNLLDDMLQRKYVP-SSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER 388 (527)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (527)
++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...|+++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777655333 344555666777778888888877776 34667777788888888888888888888854
Q ss_pred CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 043284 389 GSIPSLLTY--NTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTS 466 (527)
Q Consensus 389 ~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 466 (527)
..+.+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +-+..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 443332211 12233444568999999999999987 35578889999999999999999999999999864 236778
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHhCCCCChhhH
Q 043284 467 FSLLIEGLYESGNEGE-VGKVVSMATASGSVESDSW 501 (527)
Q Consensus 467 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~ 501 (527)
+..++..+...|+.++ +.++++++.+..|.++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999976 5789999998887665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-16 Score=148.60 Aligned_cols=348 Identities=12% Similarity=0.010 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 82 HSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP---ELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+...+.+.|++++|.++|+++.+. + +...+..+...|...|+. ++|++.|++..+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 34566677778888888888887763 2 334455566666667777 7888888777753 55556666664
Q ss_pred HHhcC-----CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChH---HHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 043284 159 LVQNK-----RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVE---GAIRVLDEMPSMGMVPNLVTHTTILGGY 230 (527)
Q Consensus 159 ~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (527)
+...+ ++++|..+|++.... + +...+..|...|...+... ++.+.+......| +...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 55544 667788888777654 2 2336666777776655433 3444444444433 344555666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----
Q 043284 231 VWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG---RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG---- 303 (527)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 303 (527)
...+.++++......+.+.-...++..+..+..+|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 666655444443222222111123336666777777777 7777777777777765 33455445566666544
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-----C
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDL-L--CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG-----K 375 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~ 375 (527)
+++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| +......+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 57777777777765 22 34444455554 3 34677777777777777665 4555556666665 44 6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 043284 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKE 447 (527)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 447 (527)
+++|...|++.. +.+...+..+...|.. ..++++|...|++..+.| +......|...|.. ..+..+
T Consensus 303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 777777777665 4456666666666655 236777777777766654 22334444444442 346667
Q ss_pred HHHHHHHHHHCC
Q 043284 448 GIRILEEMLDKG 459 (527)
Q Consensus 448 A~~~~~~~~~~~ 459 (527)
|..+|+...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 777777766655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-16 Score=136.59 Aligned_cols=224 Identities=9% Similarity=0.036 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HHhHHHH
Q 043284 258 YTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV--PS----SALCCKV 331 (527)
Q Consensus 258 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 331 (527)
+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.+++..+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444433 33444444444444444444444444444332111 01 2444455
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
..++...|++++|...++++.+.. |+ ...+...|++++|...++.+....+.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 555555555555555555555532 22 123445566666666666665545555666677777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+|...++++.+.. +.+..++..+...+...|++++|+..++++++.. +.+...+..++.++.+.|++++|.+.++++.
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777776652 2345667777777777777777777777777643 2245667777777777777777777777776
Q ss_pred hCC
Q 043284 492 ASG 494 (527)
Q Consensus 492 ~~~ 494 (527)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-16 Score=148.89 Aligned_cols=375 Identities=9% Similarity=-0.007 Sum_probs=230.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCc---hHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAF---DAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..++..+.+.|++++|.+.|+++.+. + ++.++..+...+...|+. ++|..+|+++.+. +...+..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg 76 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC---------------------------------CHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHH
Confidence 56788888888999999998888542 3 445777777777777877 8888888888753 444566666
Q ss_pred HHHHhcC-----ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCCCCCChhhHHHHHH
Q 043284 122 RNYGLAG-----RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL---VHLMFKNSRHKFKVVPNVFTCNILIK 193 (527)
Q Consensus 122 ~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (527)
..+...| ++++|+..|++..+.|. + .++..+...|...+..++ +.+.+...... .+...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~ 149 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVL 149 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 6454544 67888888888888652 2 366677777777665443 34444444332 24556777777
Q ss_pred HHHcCCChHHHHHH----HHhcccCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 043284 194 ALCKKDDVEGAIRV----LDEMPSMGMVPNLVTHTTILGGYVWRG---DIENAKRVFGDILDRGWVPDATTYTVLMDGYI 266 (527)
Q Consensus 194 ~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (527)
.|...+.++++.+. +..... .+...+..+...|...| +.++|++.|++..+.| +++...+..+..+|.
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 78777755544444 443333 23347777888888888 8888888888888887 345555566777775
Q ss_pred hc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043284 267 KL----GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEA-F--CKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEG 339 (527)
Q Consensus 267 ~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (527)
.. +++++|+.+|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 54 68888888888877 33 55666666666 4 45788888998888888765 5666666777776 44
Q ss_pred -----CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----
Q 043284 340 -----KVEDACELWKRLLRKNCMPDNAISSTIIHWLCK----EGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCE---- 406 (527)
Q Consensus 340 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 406 (527)
++++|...|++.. .| ++.....+...|.. ..++++|...|++..... +......+...|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTB
T ss_pred CCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCC
Confidence 8888888888877 33 56666677766665 338888888888885432 34455666666654
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
..++++|..+|+...+.|. ++.......+......++..+|..+.++..
T Consensus 371 ~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4578888888888877653 222222222222222334455555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=136.37 Aligned_cols=197 Identities=14% Similarity=0.052 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
+++..+..++..+.+.|++++|+..|+++++.+| .+..++..++..+.+.|++++|+..|+++.+..|. +...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP---QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHH
Confidence 3445566677777777777777777777766665 36667777777777777777777777777765443 455666
Q ss_pred HHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhh
Q 043284 119 TVIRNYGLA-----------GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFT 187 (527)
Q Consensus 119 ~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 187 (527)
.+..++... |++++|+..+++..+.. |.+..++..+..++...|++++|+..|++..... .+...
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~ 153 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHH
Confidence 666666666 66666666666655543 3345555555555555555555555555555541 34455
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGD 245 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (527)
+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555554432 12344445555555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-13 Score=135.68 Aligned_cols=433 Identities=10% Similarity=-0.010 Sum_probs=269.3
Q ss_pred ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC---hhH
Q 043284 56 NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR---PEL 132 (527)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 132 (527)
...+.+..|+..+..+| .|...|..++..+.+.+.++.+..+|+++....|. ....|...+..-.+.|+ ++.
T Consensus 47 ~~~d~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHH
Confidence 34566667788877777 58999999999999999999999999999987444 77788888888888888 999
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHhhhcCCC-CCC-hhhHHHHHHHHHc----
Q 043284 133 AVKTFLRIEKFN-VQRSVRSLNTLLNALVQNKRY--------DLVHLMFKNSRHKFKV-VPN-VFTCNILIKALCK---- 197 (527)
Q Consensus 133 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~---- 197 (527)
+.++|++.+... .+|++..|...+....+.++. +.+.++|+......|. .++ ...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 999999998864 137888888888776665543 4455888887776666 554 4677777765442
Q ss_pred -----CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHC--CC----C-
Q 043284 198 -----KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVW-------------RGDIENAKRVFGDILDR--GW----V- 252 (527)
Q Consensus 198 -----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~- 252 (527)
.++++.+..+|+.++......-..+|......-.. ..+++.|...+.++... ++ +
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 34567888999988863211112333222111101 11233334444332210 11 0
Q ss_pred ----------C--C------HHhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 043284 253 ----------P--D------ATTYTVLMDGYIKLG-------RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSG 307 (527)
Q Consensus 253 ----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (527)
| + ...|...+..--..+ ..+.+..+|+++...- +-....|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 123444443322222 1233455677766542 335667777777777777777
Q ss_pred HHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC---------CC------------CHhhHHH
Q 043284 308 EAR-NLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC---------MP------------DNAISST 365 (527)
Q Consensus 308 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ 365 (527)
+|. ++|+...... +.+...+...+......|+++.|.++|+.+..... .| ...+|..
T Consensus 361 ~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 775 7777776642 33455556666677777778888877777765310 12 1234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFERG-SIPSLLTYNTLIAGMCES-AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG 443 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 443 (527)
.+....+.|+.+.|..+|.++... .......|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 666666677777788877777443 222334444333333333 3477777777777765 3334555666666666777
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 444 NAKEGIRILEEMLDKGCFP--NKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.+.|..+|++++.....+ ....|..++..-.+.|+.+.+.++.+++.+..|.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7778888887777653211 2245666666667777777777777777766643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=133.10 Aligned_cols=198 Identities=11% Similarity=0.019 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
++...+..++..+...|++++|+..|+++.+..|. +...+..+..++.+.|++++|+..+++..+.+ |.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45567777788888888888888888888776443 66677777788888888888888888887765 4566777777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHH
Q 043284 156 LNALVQN-----------KRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 156 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 224 (527)
..++... |++++|+..|++.... .+.+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 7777776 6666666666555543 12234455555555555555555555555555544 3455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (527)
.+..++...|++++|...|+++++.. +.+...+..+..++...|++++|+..|++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555555542 224444555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-15 Score=133.42 Aligned_cols=237 Identities=8% Similarity=-0.016 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC-cChhhHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK-CGENLFIT 119 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~ 119 (527)
+..+...+..+...|++++|+..|+.+++..|. +...+..++..+...|++++|+..++++.+.++.+ .....|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 345566777777788888888888877766653 44467777777777788888888877777632111 11233667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+...+...|++++|++.|++..+.. +.+..++..+...+...|++++|...|++.... .+.+...|..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHH
Confidence 7777777777777777777777654 445566777777777777777777777776654 2234455555552333344
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHhHHHHHHHHHhcC
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD---IENAKRVFGDILDRG-WVPD------ATTYTVLMDGYIKLG 269 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g 269 (527)
++++|++.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 6777777776666543 1234555556666666565 556666666555431 0112 134555556666666
Q ss_pred ChhHHHHHHHHHHHC
Q 043284 270 RLTDAVKVMDEMEDN 284 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~ 284 (527)
++++|.+.|+++.+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-15 Score=131.69 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHH
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE--PN----EVTYG 294 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 294 (527)
..+..+...+...|++++|...|+++++.. .+...+..+..++...|++++|+..++++.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555666666666666666666666554 45556666666666666666666666665543211 11 35566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 043284 295 VMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG 374 (527)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (527)
.+...+...|++++|...+++..... |+ ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666667777777777777666643 22 234555667777777777777654 235566777777888888
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 375 KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEE 454 (527)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 454 (527)
++++|...++++....+.+...+..++.++...|++++|...++++.+.. +.+...|..+..++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888866566677888888888888888888888888887762 33467788888888888888888888888
Q ss_pred HHHC
Q 043284 455 MLDK 458 (527)
Q Consensus 455 ~~~~ 458 (527)
+++.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-16 Score=135.72 Aligned_cols=204 Identities=9% Similarity=0.012 Sum_probs=141.1
Q ss_pred CCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhh
Q 043284 37 PWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENL 116 (527)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 116 (527)
+...+..+..++..+...|++++|+..|+.+++..| .+...+..++..+...|++++|...++++.+..+. +...
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 93 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK---EDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATA 93 (243)
T ss_dssp -----------------------CCTTHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHH
Confidence 334567788899999999999999999999987665 46788999999999999999999999998876443 6678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 8888888999999999999999988875 566778888888888888888888888887765 2335666777777777
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
..|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777766543 234566666777777777777777777777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-15 Score=131.65 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=165.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHH
Q 043284 257 TYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP--SSALCCKVIDL 334 (527)
Q Consensus 257 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 334 (527)
.+......+...|++++|+..|+++.+... .+...+..+..++...|++++|.+.+++..+....+ ....+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455566666666666666666665531 234456666666666666666666666666632111 12235666777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAG 414 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 414 (527)
+...|++++|...++++.+..+ .+...+..+...|...|++++|...|++.....+.+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776543 355677777888888888888888888886666667777777773333445888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhHHH
Q 043284 415 RLWDDMVEKGVEPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKG-CFPN------KTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~ 484 (527)
..|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...+..++..|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888762 2235667777777777777 777888888877531 1133 246777888888889999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHH
Q 043284 485 KVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
+.++++.+..|.+...+..+..
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHhcCccHHHHHHHhhh
Confidence 9999988888777766665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-15 Score=138.65 Aligned_cols=230 Identities=13% Similarity=0.068 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARA-FDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
+..++.++...|++++|++.|+++++.+|. +..+|..+..++...|+ +++|+..|+++.+..|. +..+|..+..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~g~ 174 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 456677777778888888888888777763 66777777777777775 88888888877776443 5667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc-CCCh
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK-KDDV 201 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 201 (527)
++...|++++|+..|+++++.+ +.+..+|..+..++...|++++|+..|+++... .+.+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 7777788888888888877765 566777777777777778888888888777765 23356677777777777 5554
Q ss_pred HHH-----HHHHHhcccCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----
Q 043284 202 EGA-----IRVLDEMPSMGMVPNLVTHTTILGGYVWRG--DIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG----- 269 (527)
Q Consensus 202 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 269 (527)
++| ++.|++.+.... -+...|..+..++...| ++++|++.+..+ +. .+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 466666665432 24566766666666666 567777777666 33 2335566666777776653
Q ss_pred ----ChhHHHHHHHHH-HHC
Q 043284 270 ----RLTDAVKVMDEM-EDN 284 (527)
Q Consensus 270 ----~~~~a~~~~~~~-~~~ 284 (527)
.+++|+++|+++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 246777777776 443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-13 Score=132.24 Aligned_cols=424 Identities=10% Similarity=0.025 Sum_probs=292.2
Q ss_pred HHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 043284 96 AVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR---YDLVHLMF 172 (527)
Q Consensus 96 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 172 (527)
+-+..|++.....|. +...|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.|+ ++.+..+|
T Consensus 50 d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344444555444444 88899999999999999999999999999874 7788899999999888898 99999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHHcCCCh--------HHHHHHHHhccc-CCC-CC-CHHHHHHHHHHHH---------h
Q 043284 173 KNSRHKFKVVPNVFTCNILIKALCKKDDV--------EGAIRVLDEMPS-MGM-VP-NLVTHTTILGGYV---------W 232 (527)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~p-~~~~~~~l~~~~~---------~ 232 (527)
++.......+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99998632248888998888766555543 334577776553 355 44 3567777776543 2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-------------cCChhHHHHHHHHHHH--CCCC----------
Q 043284 233 RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK-------------LGRLTDAVKVMDEMED--NGVE---------- 287 (527)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~--~~~~---------- 287 (527)
.++++.+..+|+.++......-..+|......-.. ..+++.|...+.++.. .++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 34577889999998864211112334322221111 1234445555554322 1111
Q ss_pred -----C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHH-H
Q 043284 288 -----P-----N---EVTYGVMIEAFCKGK-------KSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDAC-E 346 (527)
Q Consensus 288 -----~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 346 (527)
| + ...|...+..--..+ ..+.+..+|++.+... +.....|...+..+...|+.+.|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 134555554433322 1234567788887763 337778888888888899999996 9
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC----------CC------------CHHHHHHHHHHH
Q 043284 347 LWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGS----------IP------------SLLTYNTLIAGM 404 (527)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~------------~~~~~~~l~~~~ 404 (527)
++++..... +.+...+...+......|+++.|..+|+++.... .| ...+|...+...
T Consensus 366 il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 999998753 4566777788888899999999999999984321 13 234688888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043284 405 CESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI-GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEV 483 (527)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 483 (527)
.+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. .+-+...+...+......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHH
Confidence 88899999999999998751112334444333333344 4589999999999986 344566677888888889999999
Q ss_pred HHHHHHHHhCCCC---ChhhHHHHHH--HHHhchhhhHHHHHHHHhh
Q 043284 484 GKVVSMATASGSV---ESDSWNFLLT--RIVSDLDSGAGALDELLVK 525 (527)
Q Consensus 484 ~~~~~~~~~~~~~---~~~~~~~ll~--~~~~~~~~a~~~~~~~l~~ 525 (527)
+.+|+++....++ ....|...+. ..+|+.+.+.++.+++++.
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999887763 3457887777 3459999999999998865
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-15 Score=132.59 Aligned_cols=201 Identities=12% Similarity=-0.053 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+..+..++..+...|++++|+..|+.+++..| .+..++..++..+...|++++|.+.++++.+..+. +...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHH
Confidence 44566777778888888888888888876655 35667777777888888888888888877765332 55667777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
...+...|++++|++.++++.+.+..| +...+..+...+...|++++|...|++.... .+.+...+..+...+...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcC
Confidence 777777777777777777776622222 3556666677777777777777777776654 2234555666666666666
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 200 DVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 200 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666665543 234555556666666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-13 Score=123.13 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=140.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 043284 255 ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK----GKKSGEARNLLDDMLQRKYVPSSALCCK 330 (527)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (527)
...+..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444555555555555555555555542 133444455555555 555555555555555543 4444555
Q ss_pred HHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 331 VIDLLCE----EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK----EGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 331 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...|++..... +...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 5555555 666666666666665553 45555566666666 666666666666663322 4555666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043284 403 GMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGL 474 (527)
Q Consensus 403 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 474 (527)
.|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|+++.+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6666 777777777777777653 45666677777777 788888888888877754 356667777777
Q ss_pred Hh----cCChhHHHHHHHHHHhCCCCC
Q 043284 475 YE----SGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 475 ~~----~g~~~~A~~~~~~~~~~~~~~ 497 (527)
.+ .|++++|.+.++++.+.++++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77 788888888888877776543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=134.18 Aligned_cols=247 Identities=8% Similarity=0.027 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGR-LTDAVKVMDEMEDNGVEPNEVTYGVMIEA 299 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (527)
..|..+...+...|++++|++.++++++.. +-+...|..+..++...|+ +++|+..|+++.+... -+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 344555555555555555555555555543 2244555555555555554 5555555555554421 134455555555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 043284 300 FCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEA 379 (527)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 379 (527)
+...|++++|+..|+++++.+.. +...|..+..++...|++++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~------------------------------------~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK------------------------------------NYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT------------------------------------CHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc------------------------------------CHHHHHHHHHHHHHcCChHHH
Confidence 55555555555555555443322 344444444444445555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHH
Q 043284 380 KKLFDEFERGSIPSLLTYNTLIAGMCE-SAELTEA-----GRLWDDMVEKGVEPNVFTYNMLIQGFCKIG--NAKEGIRI 451 (527)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~ 451 (527)
+..|+++....+.+...|+.+..++.. .|..++| +..+++.++.. +-+...|..+...+...| ++++|++.
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 555555444444445555555555554 3332444 35555555431 113445555555555555 45666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HhCCCCChhhHHHHHHHH
Q 043284 452 LEEMLDKGCFPNKTSFSLLIEGLYESG---------NEGEVGKVVSMA-TASGSVESDSWNFLLTRI 508 (527)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~ll~~~ 508 (527)
+.++ +. -+.+...+..++.+|.+.| ..++|.++++++ .+.++.....|..+...+
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 6555 22 1223445555666665543 136666666666 555555555555555533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=161.57 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHK--FKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTI 226 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 226 (527)
..+|+++|++|++.|++++|.++|+.|... .|..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 446777777777777777777777665421 256677777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 043284 227 LGGYVWRGDI-ENAKRVFGDILDRGWVPDATTYTVLMDGYIK 267 (527)
Q Consensus 227 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (527)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777776663 5666777777777777777777766654433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=137.04 Aligned_cols=250 Identities=12% Similarity=-0.061 Sum_probs=167.2
Q ss_pred HhcCChhHHHHHHHHhcccCCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFS-HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP 130 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 130 (527)
...|++++|+..|+.+++..+... .+..++..++..+...|++++|...|+++.+..|. +...+..++..+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCH
Confidence 345888999999998876533211 24667888888888889999999999888876443 567788888888888888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHh
Q 043284 131 ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDE 210 (527)
Q Consensus 131 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 210 (527)
++|++.|+++.+.. +.+..++..+..++...|++++|...|+++... .|+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888888765 456778888888888888888888888888765 34443444444455666788888888876
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043284 211 MPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV---PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE 287 (527)
Q Consensus 211 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 287 (527)
..... +++...+ .++..+...++.++|...+....+.... .+...+..+..++...|++++|...|+++.+..
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 65543 2233333 3556666777777777777776654211 014566667777777777777777777776652
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLL 313 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (527)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 222233445556666655544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-13 Score=121.36 Aligned_cols=223 Identities=9% Similarity=0.002 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL----AGRPELAVKTFLRIEKFNVQRSVRSL 152 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 152 (527)
++.++..+...+...|++++|...|+++.+. + +...+..+...+.. .|++++|++.|++..+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3444555555555555555555555555541 1 23344445555555 555555555555555432 34444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc----CCChHHHHHHHHhcccCCCCCCHHHHH
Q 043284 153 NTLLNALVQ----NKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK----KDDVEGAIRVLDEMPSMGMVPNLVTHT 224 (527)
Q Consensus 153 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~ 224 (527)
..+...+.. .+++++|...|++.... .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 455555555 55555555555554433 134444445555554 555555555555554433 334444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043284 225 TILGGYVW----RGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIK----LGRLTDAVKVMDEMEDNGVEPNEVTYGVM 296 (527)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (527)
.+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 44444444 455555555555555442 33444444555555 555555555555554432 23344444
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHc
Q 043284 297 IEAFCK----GKKSGEARNLLDDMLQR 319 (527)
Q Consensus 297 ~~~~~~----~~~~~~a~~~~~~~~~~ 319 (527)
...|.. .+++++|.+.|++..+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 444444 45555555555554443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=158.05 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=94.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043284 359 DNAISSTIIHWLCKEGKIWEAKKLFDEFE----RGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNM 434 (527)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 434 (527)
-..+|++++.+|++.|++++|..+|+.|. .+..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44578888888888888888888887762 45678888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043284 435 LIQGFCKIGNA-KEGIRILEEMLDKGCFPNKTSFSLLIEGLYES 477 (527)
Q Consensus 435 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 477 (527)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 88888888774 67788888888888888888888776555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-13 Score=122.23 Aligned_cols=202 Identities=10% Similarity=-0.023 Sum_probs=109.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (527)
+..+...+...|++++|.+.++++.+... .+...+..+..++...|++++|.+.++++.+... .+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 33333444444444444444444443321 1333444444444555555555555555444331 234445555555555
Q ss_pred cCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 373 EGKIWEAKKLFDEFER--GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 373 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
.|++++|...++++.. ..+.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655543 333345556666666666666666666666666542 2235556666666666667777776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
.++++.+.. +.+...+..++..+.+.|++++|.++++++.+..+.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 666666532 23445566666666666777777777776666654443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=121.86 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|.+.|+++.+..|. +...+..+...+...|++++|++.++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 334444555555555555555555554443221 33444445555555555555555555554433 233444444555
Q ss_pred HHHhc-CCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 158 ALVQN-KRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 158 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.+... |++++|...++++......+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 55555555555544310111123344444444455555555555554444332 11234444444455555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 237 ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555544443211233444444444444555555555554444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-15 Score=131.35 Aligned_cols=223 Identities=12% Similarity=-0.016 Sum_probs=137.4
Q ss_pred hcCCchHHHHHHHHhhhCCCC--CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043284 90 RARAFDAVESLLTELKQNPEI--KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDL 167 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (527)
..|++++|+..|+++.+..+. +.+..++..++..+...|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877764221 1234566777777777888888888888777765 4567777777777777788888
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043284 168 VHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDIL 247 (527)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (527)
|...|++.... .+.+...+..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...++...
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87777777765 23345667777777777777777777777776643 343333344444455677777777776665
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 248 DRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP---NEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
... +++...+ .++..+...++.++|...+++..+..... +...+..+...+...|++++|...|++....
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 542 2233333 24555556666666666666655431100 1344555555555555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-14 Score=125.07 Aligned_cols=209 Identities=11% Similarity=0.015 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043284 291 VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWL 370 (527)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (527)
..|..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3444455555555566666665555555322 234555555666666666666666666665543 22555666666677
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIR 450 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 450 (527)
...|++++|...++++....+.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|+.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777655455566677777777777777777777777777652 2356667777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHH
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNF 503 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (527)
.++++.+.. +.+..++..++.++.+.|++++|.+.++++.+..+.+...+..
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 888777653 2346677777888888888888888888887777665555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=117.91 Aligned_cols=202 Identities=10% Similarity=0.016 Sum_probs=97.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCK 372 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (527)
+..+...+...|++++|.+.++++.+... .+...+..+..++...|++++|...++++.... +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 33333344444444444444444433221 123333444444444444444444444444432 1233444444555555
Q ss_pred c-CCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 043284 373 E-GKIWEAKKLFDEFER--GSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGI 449 (527)
Q Consensus 373 ~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 449 (527)
. |++++|...++++.. ..+.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 5 555555555555533 222234455555555556666666666665555441 223455555555666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 450 RILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
..++++.+.....+...+..+...+...|+.++|..+++.+....+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 666666553211244445555555556666666666666655444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=140.56 Aligned_cols=276 Identities=10% Similarity=0.012 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhC---CC-CCcChhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQN---PE-IKCGENL 116 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~ 116 (527)
..+...+..+...|++++|+..|+++++..|..... ..++..++..+...|++++|...++++... .+ .+....+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 345678888999999999999999998876642111 357888888999999999999999887653 11 1123456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQ-RS----VRSLNTLLNALVQNKR--------------------YDLVHLM 171 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~ 171 (527)
+..+...+...|++++|+..+++..+.... .+ ..++..+...+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 778888888999999999998887654210 11 3467777788888888 7777777
Q ss_pred HHHhhhcC---CCC-CChhhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCChHHHHHH
Q 043284 172 FKNSRHKF---KVV-PNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPN----LVTHTTILGGYVWRGDIENAKRV 242 (527)
Q Consensus 172 ~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~ 242 (527)
+++..... +.. ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 76654321 101 1133556666666667777777766666543210 011 12455566666666666666666
Q ss_pred HHHHHHCCCC-CC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHH
Q 043284 243 FGDILDRGWV-PD----ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE-PN----EVTYGVMIEAFCKGKKSGEARNL 312 (527)
Q Consensus 243 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 312 (527)
+++..+.... .+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6655432100 01 334555555666666666666666555432100 01 23444455555555555555555
Q ss_pred HHHHH
Q 043284 313 LDDML 317 (527)
Q Consensus 313 ~~~~~ 317 (527)
+++..
T Consensus 330 ~~~al 334 (406)
T 3sf4_A 330 AEKHL 334 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=138.06 Aligned_cols=276 Identities=13% Similarity=0.079 Sum_probs=160.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHhH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL----VTHTTILGGYVWRGDIENAKRVFGDILDR----G-WVPDATTY 258 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 258 (527)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|+..+++.++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445555555666666655555544211 11 24445555555555555555555554432 0 01122334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHh
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK-YVPSSALCCKVIDLLCE 337 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 337 (527)
..+..+|...|++++|...++++.+... ..+ ......++..+..++..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554432100 000 00112234444555555
Q ss_pred cCC-----------------HhHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC--CC
Q 043284 338 EGK-----------------VEDACELWKRLLRK----N-CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSI--PS 393 (527)
Q Consensus 338 ~~~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 393 (527)
.|+ +++|...+++..+. + .......+..+...+...|++++|...+++.....+ .+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555554331 1 111233566677777788888888888877622111 11
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 043284 394 ----LLTYNTLIAGMCESAELTEAGRLWDDMVEKGV--E---PNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK----GC 460 (527)
Q Consensus 394 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 460 (527)
...+..++..|...|++++|...+++..+... . ....++..+...+...|++++|...++++++. +-
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23678888899999999999999988775411 0 11456788888999999999999999988752 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043284 461 FP-NKTSFSLLIEGLYESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 495 (527)
.+ ...++..++.+|.+.|++++|.+.++++.+...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 134677889999999999999999999877654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=137.17 Aligned_cols=242 Identities=12% Similarity=0.013 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCC
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--ENLFITVIRNYGLAGRPELAVKTFLRIEKF----NV-QRS 148 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~ 148 (527)
.....+...+..+...|++++|...|+++.+..+..+. ..++..+...+...|++++|+..+++.... +. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45566777888888899999999999988876443221 246777888888899999999988876543 11 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCCC--------------------hHHH
Q 043284 149 VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKDD--------------------VEGA 204 (527)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A 204 (527)
..++..+...+...|++++|...+++........++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456777778888888888888888776643111111 3356667777777777 6666
Q ss_pred HHHHHhcccC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCChhHH
Q 043284 205 IRVLDEMPSM----GMVP-NLVTHTTILGGYVWRGDIENAKRVFGDILDRGWV-PD----ATTYTVLMDGYIKLGRLTDA 274 (527)
Q Consensus 205 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a 274 (527)
++.+++.... +..+ ...++..+...+...|++++|...+++.++.... ++ ..++..+..++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666654331 1001 1234555555666666666666666655432100 01 12445555555555666666
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 275 VKVMDEMEDNGVE-PN----EVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 275 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
...+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555554432100 00 2334444444455555555555544443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=135.89 Aligned_cols=240 Identities=11% Similarity=0.017 Sum_probs=151.7
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcChhhH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCGENLF 117 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~ 117 (527)
.+..++..+...|++++|+..|+++++..|+.... ..++..++..+...|++++|...++++.+. ...+.....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 35567888899999999999999998876641110 147888899999999999999999988764 1112244567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHh
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFN-----VQRSVRSLNTLLNALVQNKR-----------------YDLVHLMFKNS 175 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 175 (527)
..+...+...|++++|+..+++..+.. .+....++..+...+...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 788888999999999999998876641 12234567777888888888 77777777665
Q ss_pred hhcC---CC-CCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 176 RHKF---KV-VPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PN----LVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 176 ~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
.... +. ......+..+...+...|++++|+..+++..+.... ++ ...+..+..++...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4321 00 112235556666666677777776666665442100 01 124555555666666666666666555
Q ss_pred HHCCCC-----CCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 247 LDRGWV-----PDATTYTVLMDGYIKLGRLTDAVKVMDEME 282 (527)
Q Consensus 247 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 282 (527)
++.... ....++..+..++...|++++|...+++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432100 012344455555555555555555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=130.87 Aligned_cols=204 Identities=8% Similarity=0.011 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhC----CCCCcChhhHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-YDTYHSIIHKLARARAFDAVESLLTELKQN----PEIKCGENLFI 118 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ 118 (527)
+...+..+...|++++|+..|+++++..|+.... ...+..++..+...|++++|.+.++++.+. ...+....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3456777888899999999999888776541111 356778888888889999988888876653 11112244667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNV-QRS----VRSLNTLLNALVQNKR--------------------YDLVHLMFK 173 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~ 173 (527)
.+...+...|++++|++.+++..+... ..+ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 777888888888888888887765311 011 2356667777777777 666666665
Q ss_pred HhhhcC---C-CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 043284 174 NSRHKF---K-VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPN----LVTHTTILGGYVWRGDIENAKRVFG 244 (527)
Q Consensus 174 ~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (527)
+..... + .......+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543210 0 001123445555555555666666655555443200 001 1134444444555555555555554
Q ss_pred HHH
Q 043284 245 DIL 247 (527)
Q Consensus 245 ~~~ 247 (527)
+..
T Consensus 248 ~al 250 (338)
T 3ro2_A 248 KTL 250 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-13 Score=120.50 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=141.4
Q ss_pred hHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh-------cCCc-------hHHHHHHHHhhh-CCCCCcChhhHHHHHH
Q 043284 58 DLALQIFHYAGKFHPNFSHNYDTYHSIIHKLAR-------ARAF-------DAVESLLTELKQ-NPEIKCGENLFITVIR 122 (527)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~l~~ 122 (527)
++|+.+|+++++..| .++..|..++..+.. .|++ ++|+.+|+++.+ ..|. +...|..++.
T Consensus 33 ~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHH
Confidence 688899999988776 477888888887763 4776 788888888887 3333 5567778888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH-cCCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVR-SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC-KKDD 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 200 (527)
.+...|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++.... .+++...|...+.... ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 8888888888888888888753 22333 6777777777778888888888777654 1223333433322211 2566
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHhcCChhHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRG-WVP--DATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
+++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++.+... .+| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665542 1245556666666666666666666666666642 232 344555566666666666666666
Q ss_pred HHHHHHC
Q 043284 278 MDEMEDN 284 (527)
Q Consensus 278 ~~~~~~~ 284 (527)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=130.07 Aligned_cols=239 Identities=12% Similarity=0.018 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--ENLFITVIRNYGLAGRPELAVKTFLRIEKF----NV-QRSVRS 151 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 151 (527)
..+...+..+...|++++|...|+++.+..+..+. ...+..+...+...|++++|++.+++..+. +. +....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 35566677788889999999999888876443211 356777888888889999998888876543 11 122456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCCC--------------------hHHHHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKDD--------------------VEGAIRV 207 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 207 (527)
+..+...+...|++++|...+++........++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777778888888888888888776543111112 3366667777777777 6777666
Q ss_pred HHhcccC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHhHHHHHHHHHhcCChhHHHHH
Q 043284 208 LDEMPSM----GMV-PNLVTHTTILGGYVWRGDIENAKRVFGDILDRGW-----VPDATTYTVLMDGYIKLGRLTDAVKV 277 (527)
Q Consensus 208 ~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~ 277 (527)
+++.... +.. .....+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654331 100 1123455555666666666666666665543210 00122445555555666666666666
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 278 MDEMEDNGVE-PN----EVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 278 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6554432100 01 2334444445555555555555554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=129.07 Aligned_cols=297 Identities=12% Similarity=0.029 Sum_probs=160.9
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHH--HHHHHHHHH--HhcCCchHHH-----------HHHHHhhhCCCCCcC---
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYD--TYHSIIHKL--ARARAFDAVE-----------SLLTELKQNPEIKCG--- 113 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~-----------~~~~~~~~~~~~~~~--- 113 (527)
.+++++++|..+++.+.+..+....+.. .|..++..- ...++++.+. +.++.+... +.+.+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~-~~~~~~~l 101 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK-QARLTGLL 101 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH-THHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc-CCCchhHH
Confidence 4688999999998887654444333433 333333221 1223344444 556655442 11101
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---
Q 043284 114 -ENLFITVIRNYGLAGRPELAVKTFLRIEKF----NVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN--- 184 (527)
Q Consensus 114 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 184 (527)
...+......+...|++++|++.+++..+. +-++ ...++..+...+...|++++|...+++........++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 011222556667778888888888887654 1011 2356777777788888888888777776543221111
Q ss_pred --hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC
Q 043284 185 --VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PN----LVTHTTILGGYVWRGDIENAKRVFGDILD-----RGWV 252 (527)
Q Consensus 185 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 252 (527)
..+++.+...|...|++++|++.|++..+.... ++ ..++..+..+|...|++++|++.+++.++ ...+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 345666677777777777777777666542100 11 13566666677777777777777766665 2212
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCC-C
Q 043284 253 PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG----VEPNEVTYGVMIEAFCKGKK---SGEARNLLDDMLQRKYVP-S 324 (527)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~ 324 (527)
....++..+..++.+.|++++|...+++..+.. -+.....+..+...+...|+ .++|+.++++. +..+ .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 234556666667777777777777766655321 01111223444555555555 44444444433 1111 1
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 325 SALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
...+..+...+...|++++|...+++..
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234445555555555555555555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-12 Score=114.70 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA-ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMC 405 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (527)
.+..++..+...|++++|..+|+++.+..+. +.. ++..++..+.+.|++++|..+|++.....+.+...|...+....
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 111 34444444444444444444444443333333333332222211
Q ss_pred -hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChh
Q 043284 406 -ESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-CFP--NKTSFSLLIEGLYESGNEG 481 (527)
Q Consensus 406 -~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~ 481 (527)
..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++++... +.| ....|..++..+.+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1355555555555544431 1234444444555555555555555555555431 222 2334444444555555555
Q ss_pred HHHHHHHHHHhCCC
Q 043284 482 EVGKVVSMATASGS 495 (527)
Q Consensus 482 ~A~~~~~~~~~~~~ 495 (527)
+|..+++++.+..|
T Consensus 259 ~a~~~~~~a~~~~p 272 (308)
T 2ond_A 259 SILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc
Confidence 55555555544443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=112.16 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..|..++..+...|++++|++.|+++++.+|. +..++..++.++...|++++|...++.+....+. +...+..+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 80 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHHH
Confidence 34566677777777777777777777666663 5666777777777777777777777766654333 445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
..+...++++.|.+.+.+..... +.+..++..+..++.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 66666777777777776666654 445666666666666677777777766666654 223455666666666666666
Q ss_pred HHHHHHHHhcccC
Q 043284 202 EGAIRVLDEMPSM 214 (527)
Q Consensus 202 ~~A~~~~~~~~~~ 214 (527)
++|++.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-13 Score=124.72 Aligned_cols=229 Identities=9% Similarity=-0.063 Sum_probs=142.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-----CHHhHH
Q 043284 261 LMDGYIKLGRLTDAVKVMDEMEDN----GVEP-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYV-P-----SSALCC 329 (527)
Q Consensus 261 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 329 (527)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666542 1011 1245556666666666666666666665542100 1 123455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-----CC-CCCHHHHH
Q 043284 330 KVIDLLCEEGKVEDACELWKRLLRKNCM-P----DNAISSTIIHWLCKEGKIWEAKKLFDEFER-----GS-IPSLLTYN 398 (527)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 398 (527)
.+..++...|++++|...++++.+.... . ...++..+...|...|++++|...+++... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667777777777777777766643110 1 123566677778888888888888877733 33 34566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 043284 399 TLIAGMCESAELTEAGRLWDDMVEK----GVEPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPN-KTSFSLL 470 (527)
Q Consensus 399 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 470 (527)
.++..|...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888877653 111112235566777778888 66666666655 22232 3456678
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043284 471 IEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+..|...|++++|.+.++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-13 Score=109.80 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
++..|..++..+...|++++|++.|+++.+..|. +..++..+..++...|++++|+..+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 4556777777777777777777777777665443 55566667777777777777777777666654 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
..+...++++.+...+++.... .+.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 6666667777777666666554 22345556666666666666666666666665543 22455566666666666666
Q ss_pred HHHHHHHHHHHHC
Q 043284 237 ENAKRVFGDILDR 249 (527)
Q Consensus 237 ~~a~~~~~~~~~~ 249 (527)
++|++.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=130.17 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------C
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFH-----PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN------P 108 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 108 (527)
....+..++..+...|++++|+..|+.+++.. +..+....++..++..+...|++++|...++++.+. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567889999999999999999999997631 112235667888999999999999999999988764 1
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--
Q 043284 109 EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF------NV-QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF-- 179 (527)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 179 (527)
..+.....+..+...+...|++++|++.++++.+. +. +....++..+...+...|++++|...|++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12234557778888889999999999999888764 11 2234567777788888888888888888776531
Q ss_pred ----CCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 180 ----KVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 180 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
..+....++..+...+...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112244566777777777888887777777664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-13 Score=129.51 Aligned_cols=217 Identities=8% Similarity=-0.045 Sum_probs=176.9
Q ss_pred CCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043284 92 RAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP-ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170 (527)
Q Consensus 92 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 170 (527)
+.++++...++......+ .+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|..
T Consensus 82 ~~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346778888887776533 3677888888899999999 99999999988875 5668888899999999999999999
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHcC---------CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc--------
Q 043284 171 MFKNSRHKFKVVPNVFTCNILIKALCKK---------DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWR-------- 233 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 233 (527)
.|++.... .|+...+..+...+... |++++|++.|++..+... .+...|..+..+|...
T Consensus 159 ~~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcccc
Confidence 99998865 56778888888888888 999999999998887642 3577888888888888
Q ss_pred CChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 043284 234 GDIENAKRVFGDILDRGWV--PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (527)
|++++|++.|++.++.... .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999886421 478888899999999999999999999988764 2356778888888888889888887
Q ss_pred HHHHH
Q 043284 312 LLDDM 316 (527)
Q Consensus 312 ~~~~~ 316 (527)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-13 Score=127.40 Aligned_cols=217 Identities=14% Similarity=0.016 Sum_probs=176.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 128 GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRY-DLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
+++++++..++...... +.+...+..+...+...|++ ++|+..|++..+. .+.+...|..+..+|...|++++|++
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677778888776653 45788888888999999999 9999999998876 23357788899999999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--------C
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWR---------GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL--------G 269 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 269 (527)
.|++..+.. |+...+..+..++... |++++|++.++++++.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999988864 6778888888888888 99999999999988875 34678888888888888 8
Q ss_pred ChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 043284 270 RLTDAVKVMDEMEDNGVE--PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACEL 347 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (527)
++++|+..|++..+.... .+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998886320 37788888999999999999999999998886533 566777888888888888888876
Q ss_pred HHHH
Q 043284 348 WKRL 351 (527)
Q Consensus 348 ~~~~ 351 (527)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=123.75 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQN------PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF----- 143 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 143 (527)
+.+..++..++..+...|++++|..+++++.+. ...+.....+..+...+...|++++|+..+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678888999999999999999999988873 012234567788888999999999999999888764
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----C-CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccC-
Q 043284 144 -N-VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF-----K-VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSM- 214 (527)
Q Consensus 144 -~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 214 (527)
+ .+....++..+...+...|++++|...|++..... + .+.....+..+...+...|++++|+++|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 12235677788888888999999988888876542 1 1223456777778888888888888888777653
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 215 -----GMVP-NLVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 215 -----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
+..| ...++..+..++...|++++|.+.++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234566777777788888888888777765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=116.41 Aligned_cols=303 Identities=11% Similarity=0.016 Sum_probs=167.3
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHhcccCCCCCCCHH--HHHHHHHHH--HhcCCchHHH---------HHHHHhhhCCC
Q 043284 45 KRLVSMI--FRQQNLDLALQIFHYAGKFHPNFSHNYD--TYHSIIHKL--ARARAFDAVE---------SLLTELKQNPE 109 (527)
Q Consensus 45 ~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~---------~~~~~~~~~~~ 109 (527)
..+-..| ..++++++|..+++.+.+.......+.. .|..++..- .-.+.+..+. +.++.+... +
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 92 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP-Q 92 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG-G
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc-C
Confidence 3344444 6789999999999887544333333433 334433321 1123333333 555555432 1
Q ss_pred CCcC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 110 IKCG----ENLFITVIRNYGLAGRPELAVKTFLRIEKFNV-QR----SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 110 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
.+.+ ...+......+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++......
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1101 11233445566778888888888888765411 11 234667777788888888888877777654322
Q ss_pred CCC-----ChhhHHHHHHHHHcCCChHHHHHHHHhcccC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 043284 181 VVP-----NVFTCNILIKALCKKDDVEGAIRVLDEMPSM----GMV-PNLVTHTTILGGYVWRGDIENAKRVFGDILD-- 248 (527)
Q Consensus 181 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 248 (527)
..+ ...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|++.+++.++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 111 1345667777777777777777777766542 111 1123566667777777777777777777665
Q ss_pred ---CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHccCC---HHHHHHHHHHHHH
Q 043284 249 ---RGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE---P-NEVTYGVMIEAFCKGKK---SGEARNLLDDMLQ 318 (527)
Q Consensus 249 ---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 318 (527)
.. +....++..+..++.+.|++++|...+++..+.... + ....+..+...+...++ ..+|+..+++
T Consensus 253 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~--- 328 (378)
T 3q15_A 253 REKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK--- 328 (378)
T ss_dssp HHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---
T ss_pred HhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---
Confidence 32 223556666677777777777777777776653211 1 12233444445555555 4445544443
Q ss_pred cCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043284 319 RKYVPS-SALCCKVIDLLCEEGKVEDACELWKRLL 352 (527)
Q Consensus 319 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (527)
.+..++ ...+..+...|...|++++|...+++..
T Consensus 329 ~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 329 KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111111 2233445555666666666666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-13 Score=132.51 Aligned_cols=166 Identities=10% Similarity=-0.003 Sum_probs=148.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++.++.++|++++|++.|+++++.+|+ +..++..++.++.+.|++++|+..|+++.+..|. +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 4567889999999999999999999999998884 7889999999999999999999999999987554 6788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+..++...|++++|++.|++..+.+ +.+..++..+..++...|++++|+..|++..+. .+.+...+..+..++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence 9999999999999999999999886 567889999999999999999999999999876 2335778999999999999
Q ss_pred ChHHHHHHHHhccc
Q 043284 200 DVEGAIRVLDEMPS 213 (527)
Q Consensus 200 ~~~~A~~~~~~~~~ 213 (527)
++++|.+.++++.+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-11 Score=115.56 Aligned_cols=228 Identities=8% Similarity=-0.078 Sum_probs=141.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CC-CHHhHHH
Q 043284 262 MDGYIKLGRLTDAVKVMDEMEDNGV-EPN----EVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY-----VP-SSALCCK 330 (527)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 330 (527)
...+...|++++|+..|+++.+... .++ ..++..+...|...|+++.|...+++..+... .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566666666666666654210 011 34555566666667777777666666554210 00 1334556
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCHHHHHHH
Q 043284 331 VIDLLCEEGKVEDACELWKRLLRK----NC-MPDNAISSTIIHWLCKEGKIWEAKKLFDEFER-----GSIPSLLTYNTL 400 (527)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l 400 (527)
+..++...|++++|.+.+++..+. +. .....++..+..+|...|++++|...+++... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 667777777777777777766552 11 11224556677778888888888888887744 444456777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 043284 401 IAGMCESAELTEAGRLWDDMVEKGV---EPN-VFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPN-KTSFSLLIE 472 (527)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 472 (527)
+..+...|++++|...+++..+... .+. ...+..+...+...|+ +.+|+..+++. +..|+ ...+..++.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 8888888888888888888776421 111 2345555556667777 66666666652 22222 234667888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043284 473 GLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~ 492 (527)
.|...|++++|.+.++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-11 Score=103.08 Aligned_cols=205 Identities=9% Similarity=-0.049 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043284 288 PNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTII 367 (527)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (527)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.++. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3557777777888888888888888888887655456666666778888888888888888888876533 566777778
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 043284 368 HWLCKEGKIWEAKKLFDEFERGSIPSL-------LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN---VFTYNMLIQ 437 (527)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 437 (527)
.++...|++++|...+++.....+.+. ..|..+...+...|++++|+..|++..+. .|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 888888888888888888765555566 45777777777888888888888887754 454 345666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHH
Q 043284 438 GFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNF 503 (527)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (527)
++... +...++++...+ ..+...+.... ....|.+++|...++++.+..|.+......
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 66443 334455555543 22333343332 334566788888888888877665544433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-10 Score=109.26 Aligned_cols=301 Identities=10% Similarity=0.040 Sum_probs=180.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HhH
Q 043284 188 CNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLV----THTTILGGYVWRGDIENAKRVFGDILDRGWV-PDA----TTY 258 (527)
Q Consensus 188 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 258 (527)
.......+...|++++|...+++........+.. .+..+...+...|++++|.+.+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888776643222222 4556666777888888888888877653111 121 234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CHHh
Q 043284 259 TVLMDGYIKLGRLTDAVKVMDEMEDN----GVE--P-NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVP----SSAL 327 (527)
Q Consensus 259 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 327 (527)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667777888888888888876642 211 2 23445566777778888888888888776643221 1234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HhhHH----HHHHHHHHcCCHHHHHHHHHHHhcCCCCC----HHHH
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPD--NAISS----TIIHWLCKEGKIWEAKKLFDEFERGSIPS----LLTY 397 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 397 (527)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++......+.+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55667777778888888888877765311111 11111 22334667788888888877774322211 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043284 398 NTLIAGMCESAELTEAGRLWDDMVEK----GVEPNV-FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIE 472 (527)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 472 (527)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 56677777778888888777776542 211122 245555666777778888887777777521 10 01122
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC
Q 043284 473 GLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
.+...| +....+++.+....+.
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 344444 5666666666665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=102.97 Aligned_cols=162 Identities=12% Similarity=0.001 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|+..|+.+++..| .+...+..++..+...|++++|...++++.+..+. +...+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~ 85 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA---FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 44556666666666666666666654443 24556666666666666666666666666554222 44555556666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665543 344555555556666666666666666655544 12234445555555555555555
Q ss_pred HHHHHHhccc
Q 043284 204 AIRVLDEMPS 213 (527)
Q Consensus 204 A~~~~~~~~~ 213 (527)
|.+.+++..+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-10 Score=108.78 Aligned_cols=269 Identities=10% Similarity=0.011 Sum_probs=145.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCCH----HHHH
Q 043284 154 TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV----FTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPNL----VTHT 224 (527)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~ 224 (527)
.....+...|++++|...+++...... ..+. ..++.+...+...|++++|.+.+++...... ..+. .++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455566777777777776655421 1111 1345555666667777777777766554210 0111 2244
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHH
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDR----GWV--P-DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP----NEVTY 293 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~ 293 (527)
.+...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5556666777777777777666542 111 1 22344556666667777777777777665432111 12345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---HhhHH
Q 043284 294 GVMIEAFCKGKKSGEARNLLDDMLQRKYVPS--SALCC----KVIDLLCEEGKVEDACELWKRLLRKNCMPD---NAISS 364 (527)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 364 (527)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5566666677777777777776654311111 11111 122335566777777777766654332111 12344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFER-----GSIPSL-LTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
.+...+...|++++|...++.... +.+++. ..+..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556666677777777777766511 111112 24555566666677777777777766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=123.76 Aligned_cols=166 Identities=6% Similarity=-0.041 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+..+++.++..+.+.|++++|++.|+++.+..|. +..++..+..+|.+.|++++|++.|++.++.+ +.+..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4779999999999999999999999999987554 67889999999999999999999999999886 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDI 236 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 236 (527)
.++...|++++|++.|++..+. .+.+...|+.+..+|.+.|++++|++.|++..+... -+...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 9999999999999999999876 234578899999999999999999999999988652 2578899999999999999
Q ss_pred HHHHHHHHHHHH
Q 043284 237 ENAKRVFGDILD 248 (527)
Q Consensus 237 ~~a~~~~~~~~~ 248 (527)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-11 Score=99.54 Aligned_cols=164 Identities=17% Similarity=0.077 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45556666666777777777777776654332 45566666666777777777777777766653 3455666666666
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN 238 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 238 (527)
+...|++++|...+++.... .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666554 22344455555555566666666666665555432 1234455555555555555555
Q ss_pred HHHHHHHHHH
Q 043284 239 AKRVFGDILD 248 (527)
Q Consensus 239 a~~~~~~~~~ 248 (527)
|...++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=99.45 Aligned_cols=201 Identities=11% Similarity=-0.018 Sum_probs=160.9
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 043284 253 PDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVI 332 (527)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (527)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888899999999999999999999998764367888888999999999999999999999986543 567888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Q 043284 333 DLLCEEGKVEDACELWKRLLRKNCMPDN-------AISSTIIHWLCKEGKIWEAKKLFDEFERGSIP--SLLTYNTLIAG 403 (527)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 403 (527)
.++...|++++|...+++..+..+. +. ..+..+...+...|++++|...|+++....+. +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999987533 44 45777888899999999999999999777766 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 043284 404 MCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKT 465 (527)
Q Consensus 404 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 465 (527)
|...| ..+++++...+ ..+...|.... ....+.+++|+..++++++. .|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 86554 44556666543 23444444433 33456789999999999985 46543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-12 Score=111.37 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=108.4
Q ss_pred hcCChhHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC------CCCCcChhhHHHHH
Q 043284 53 RQQNLDLALQIFHYAGKFH-----PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN------PEIKCGENLFITVI 121 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~ 121 (527)
..|++++|+..|+++++.. +..+....++..++..+...|++++|...++++.+. ...+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567777777776665421 122234667888888899999999999999888764 11223455777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCChhhH
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFN-------VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF------KVVPNVFTC 188 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~ 188 (527)
..+...|++++|++.+++..+.. .+....++..+...+...|++++|...|++..... ..+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88888899999988888877641 12235567777777888888888888777766430 111124456
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccc
Q 043284 189 NILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 189 ~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
..+...+...|++++|...+++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777777777777777766654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=107.41 Aligned_cols=190 Identities=9% Similarity=-0.016 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFI 118 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 118 (527)
++..+..++..+.+.|++++|+..|+.+++..|..+....++..++.++...|++++|+..|+++.+..|..+ ...++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4456778889999999999999999999888776444478899999999999999999999999988644332 345677
Q ss_pred HHHHHHHh--------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHH
Q 043284 119 TVIRNYGL--------AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNI 190 (527)
Q Consensus 119 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (527)
.+..++.. .|++++|+..|+++.+.. |.+......+.. +..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH-----HHHHHHH
Confidence 88888888 899999999999998864 233333321110 0000000 0111344
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHC
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMGMVP--NLVTHTTILGGYVWR----------GDIENAKRVFGDILDR 249 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 249 (527)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+.+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5555666666666666666655432110 123445555555544 5666666666666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=105.14 Aligned_cols=165 Identities=11% Similarity=0.008 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCC--C----H
Q 043284 327 LCCKVIDLLCEEGKVEDACELWKRLLRKNC---MP--DNAISSTIIHWLCKE-GKIWEAKKLFDEFERGSIP--S----L 394 (527)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~----~ 394 (527)
++..+..+|...|++++|+..+++...... .+ ...++..+..+|... |++++|...|++.....+. + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444445555555555555444443210 00 123456677777775 8888888888776321111 1 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNV------FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK---- 464 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---- 464 (527)
.+++.++..+...|++++|+..|++..+....... ..|..+..++...|++++|+..|++.++. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 56788888899999999999999988875322221 14667777888899999999999988763 3432
Q ss_pred --HHHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 043284 465 --TSFSLLIEGLY--ESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 465 --~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 493 (527)
..+..++.++. ..+++++|.+.|+++...
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 13444555554 446788888888765443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-09 Score=101.83 Aligned_cols=379 Identities=9% Similarity=0.015 Sum_probs=210.0
Q ss_pred hcC-ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCC-h
Q 043284 53 RQQ-NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGR-P 130 (527)
Q Consensus 53 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 130 (527)
++| +++.|+.+|++++..-|. |+++.+..+|++..... |+...|...+....+.+. .
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~ 64 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKK 64 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC---
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchH
Confidence 456 488889999888655442 88999999999998853 377788877777766663 4
Q ss_pred hHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 131 ELAVKTFLRIEKF-NV-QRSVRSLNTLLNALV----QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 131 ~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
+....+|+..+.. |. +.+...|...+..+. ..|+.+.+..+|++.... ....-...|......- +......+
T Consensus 65 ~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE-~~~~~~~~ 142 (493)
T 2uy1_A 65 FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFE-LELNKITG 142 (493)
T ss_dssp -CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHH-HHHCHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHH-HHhccccH
Confidence 5677788877654 32 345677777776654 345678888888888753 1111111222221111 11111112
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--C-----hhHHHHH
Q 043284 205 IRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG--R-----LTDAVKV 277 (527)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~ 277 (527)
..++.+ .. +.+..|..+++.+...-...+...|...+..-...+ - .+.+..+
T Consensus 143 ~~~~~~-------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGD-------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHH-------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHH-------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 222111 11 123334444443332100013334554444332221 0 2345677
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--
Q 043284 278 MDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKN-- 355 (527)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 355 (527)
|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.-
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHh
Confidence 77777653 335677777777777888888888888888776 22222221 22222111111 22222110
Q ss_pred ----------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 043284 356 ----------CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES-AELTEAGRLWDDMVEKG 424 (527)
Q Consensus 356 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 424 (527)
......+|...+....+.++.+.|..+|+++ .....+...|...+..-... ++.+.|..+|+...+.-
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0011234555556666677788888888888 32223444454333322222 35888888888887752
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 425 VEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 425 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+-++..+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234455666676677888888888888862 2456677777766777888888888887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-09 Score=102.50 Aligned_cols=366 Identities=10% Similarity=-0.001 Sum_probs=223.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHhhhCCC-CCcChhhHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARA-FDAVESLLTELKQNPE-IKCGENLFITVIR 122 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~ 122 (527)
...+..+-. |+++.+.++|+++++.. |+...|...+....+.++ .+....+|+.+...-+ ...+..+|...+.
T Consensus 19 er~l~~~P~-~~~e~~~~iferal~~~----ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 19 EHARRLYMS-KDYRSLESLFGRCLKKS----YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHCCC-CCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 333444433 89999999999997643 588899999988887764 4667888998887522 3346678888777
Q ss_pred HHH----hcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 123 NYG----LAGRPELAVKTFLRIEKFNVQRS--VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 123 ~~~----~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
.+. .+|+.+.+..+|++.+.. |+. ...|...... ....+...+..++.+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~-------------------- 150 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKKIVGDTL-------------------- 150 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH--------------------
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh--------------------
Confidence 654 346788999999999974 322 1222222221 11112222333322211
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRG--D-----IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG 269 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (527)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|
T Consensus 151 --~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 151 --PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 112222323322221000013345554444322211 1 345677888888753 446778888888888889
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------CCC---CHHhHHHHHHHHHh
Q 043284 270 RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRK---------YVP---SSALCCKVIDLLCE 337 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~ 337 (527)
+.+.|..+|++.... +.+...|... ....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 228 ~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999998887 3333333322 211111111 22222210 001 12446666667777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 338 EGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKE-GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
.++.+.|..+|+.+ +. ...+..+|...+..-... ++.+.|..+|+......+.+...+...+......|+.+.|..+
T Consensus 299 ~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999999999 32 223444554333333333 3699999999999554555666777778878889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
|+++. .....|...+..-...|+.+.+..+++++..
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99973 2567788888777788999999999988874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-09 Score=92.26 Aligned_cols=221 Identities=10% Similarity=-0.015 Sum_probs=165.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC--CchHHHHHHHHhhhCCCCCcChhhHHHHHHHH----Hhc
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR--AFDAVESLLTELKQNPEIKCGENLFITVIRNY----GLA 127 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 127 (527)
....++|++.++.++..+|. +..+|+....++...| ++++++..++.+....|- +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 46 EEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhc
Confidence 34557999999999999884 7789999999999888 999999999999987554 455666444444 444
Q ss_pred ---CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC--
Q 043284 128 ---GRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD--LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-- 200 (527)
Q Consensus 128 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 200 (527)
+++++++++++++.+.. +.+..+|+.-..++...|.++ ++++.++++... .+-|...|+.....+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 78999999999999876 678889998888888888888 899999998876 34467777777766666665
Q ss_pred ----hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCChhH
Q 043284 201 ----VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN-AKRVFGDILDRG--WVPDATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 201 ----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 273 (527)
++++++.++++....+ -|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++.++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 7778888877776653 367777777777777766433 445555554432 12356667777777777777778
Q ss_pred HHHHHHHHHH
Q 043284 274 AVKVMDEMED 283 (527)
Q Consensus 274 a~~~~~~~~~ 283 (527)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887777765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-11 Score=105.72 Aligned_cols=227 Identities=15% Similarity=0.075 Sum_probs=144.6
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHhHHHH
Q 043284 266 IKLGRLTDAVKVMDEMEDN-------GVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR------KYVP-SSALCCKV 331 (527)
Q Consensus 266 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 331 (527)
...|++++|+..+++..+. ..+....++..+...+...|++++|...+++..+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888777776542 11223567788888889999999999999888764 2222 34567778
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CCCCHHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRK------N-CMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERG--------SIPSLLT 396 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 396 (527)
..++...|++++|...++++... . .+.....+..+...+...|++++|...++++... .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999999988887764 1 1223556677788888888888888888887322 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCC
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEK-------GVEPN-VFTYNMLIQGFCKIGNAK------EGIRILEEMLDKGCFP 462 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p 462 (527)
+..++..|...|++++|..+++++.+. ...+. ...|..+.......+... .+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 778888888888888888888887753 11222 223333333333322222 222222211110 011
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043284 463 NKTSFSLLIEGLYESGNEGEVGKVVSMATAS 493 (527)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (527)
...++..++..|.+.|++++|.++++++.+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345777888888888888888888887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-09 Score=94.89 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=169.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 043284 228 GGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSG 307 (527)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (527)
+-..-.|++..++.-. .+.........-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3445679999888733 3222222333444556888888887742 11234443444444433 322
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 308 EARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNC-MPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
++..|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++++
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777888777654 44555566788899999999999999999877664 236677788899999999999999999999
Q ss_pred hcCCCC----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 043284 387 ERGSIP----SLLTYNTLIAG--MCESA--ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 387 ~~~~~~----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (527)
....+. +-.+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 654331 24445555555 34344 899999999999765 566334444555889999999999999976642
Q ss_pred -----CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 459 -----GC----FPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 459 -----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
+. +.+..++..++......|+ +|.++++++.+..|..+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 11 2355666567777777787 88999999988876554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-09 Score=91.50 Aligned_cols=250 Identities=7% Similarity=0.011 Sum_probs=172.0
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh
Q 043284 192 IKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRL 271 (527)
Q Consensus 192 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (527)
++-..-.|++..++.-..++... .....-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 34455679999999866555432 2233444566888888887742 12233433444444333 322
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 043284 272 TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKY-VPSSALCCKVIDLLCEEGKVEDACELWKR 350 (527)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (527)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+.++.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888877654 45666667888899999999999999999877654 23567778889999999999999999999
Q ss_pred HHhCCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 351 LLRKNCMP-----DNAISSTIIHW--LCKEG--KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 351 ~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
|.+. .| +..+...++.+ ....| ++.+|..+|+++.... |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9876 34 24555556655 33344 8999999999985543 442333334448899999999999999776
Q ss_pred Hc-----CC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 043284 422 EK-----GV----EPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTS 466 (527)
Q Consensus 422 ~~-----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 466 (527)
+. .. +.|+.++..++......|+ +|.++++++.+. .|+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 43 11 3356677567666666787 889999999985 466544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-10 Score=101.95 Aligned_cols=195 Identities=10% Similarity=0.001 Sum_probs=89.6
Q ss_pred HHhcCCchHHHHHHHHhhhC---CCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CC--CHHHHHHHHHH
Q 043284 88 LARARAFDAVESLLTELKQN---PEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNV---QR--SVRSLNTLLNA 158 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~ 158 (527)
+...|++++|...|+++.+. .+.++ ...+|..+..+|...|++++|+..+++..+... .+ ...++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544432 01110 123455555555555555555555555543210 00 02345555555
Q ss_pred HHhc-CCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCH------HHHHHHH
Q 043284 159 LVQN-KRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNL------VTHTTIL 227 (527)
Q Consensus 159 ~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 227 (527)
|... |++++|+..|++.........+ ..+++.+...+.+.|++++|+..|++..+....... ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 5554 6666666555555432100000 234555556666666666666666655544221111 1344555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CC---HHhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 043284 228 GGYVWRGDIENAKRVFGDILDRGWV-PD---ATTYTVLMDGYI--KLGRLTDAVKVMDEME 282 (527)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 282 (527)
.++...|++++|...|++.++.... ++ ...+..++..+. ..+++++|+..|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 5555666666666666655543110 00 112233334443 2345666666665544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=97.54 Aligned_cols=186 Identities=7% Similarity=-0.051 Sum_probs=127.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcCh-hhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGE-NLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 121 (527)
.+..++..+.+.|++++|+..|+.+++..|..+....++..++.++.+.|++++|+..|+++.+..|..+.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 355678889999999999999999988777654456789999999999999999999999998865543332 2455555
Q ss_pred HHHHh------------------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 043284 122 RNYGL------------------AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP 183 (527)
Q Consensus 122 ~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 183 (527)
.++.. .|++++|+..|+++.+.. |.+..++....... .+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--------
Confidence 55544 456777777777776653 22222222111000 000000
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043284 184 NVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN----LVTHTTILGGYVWRGDIENAKRVFGDILDRG 250 (527)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (527)
......+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112346677888889999999988887753 33 2467778888888999999999888887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-10 Score=96.17 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHH----------------HHHHHHhcCCchHHHHHHHHhhhCC
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHS----------------IIHKLARARAFDAVESLLTELKQNP 108 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~ 108 (527)
...+..+...|++++|+..|+.+++.+|. +...|.. ++.++.+.|++++|+..|+++.+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44566777889999999999988877663 4555655 5555566666666666666655543
Q ss_pred CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhcCCCCCChh
Q 043284 109 EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR--YDLVHLMFKNSRHKFKVVPNVF 186 (527)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 186 (527)
|. +...+..+..++...|++++|+..|++..+.. |.+..++..+..++...|+ .+.+...++.... ..|...
T Consensus 85 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 158 (208)
T 3urz_A 85 PN--NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQY 158 (208)
T ss_dssp TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHH
T ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhH
Confidence 32 44555555566666666666666666665554 3445555555555544332 2233333333321 112222
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
.+..+..++...|++++|+..|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2223333444455555555555555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-11 Score=95.71 Aligned_cols=146 Identities=11% Similarity=0.018 Sum_probs=108.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
|+.++...|++++|++.++.++...| .++..+..+...|.+.|++++|++.|+++.+..|. +..+|..+..++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 56667778889999999988865443 34557778888888999999999999988886554 67788888888899
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLM-FKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.|++++|+..|++..+.+ |.+..++..+..++.+.|++++|... +++..+. .+.+..+|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999999999888875 56678888888888888888765544 5666654 23356667766666666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=116.89 Aligned_cols=174 Identities=10% Similarity=-0.063 Sum_probs=120.7
Q ss_pred HhcCCchHHHHHHHHhh--------hCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 89 ARARAFDAVESLLTELK--------QNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 89 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
...|++++|++.++++. +..|. +...+..+...+...|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56777888888888777 43332 55667777777788888888888888877765 456777777777888
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAK 240 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 240 (527)
..|++++|...|++.... .+.+...|..+..++.+.|++++ ++.|++..+.+. .+...|..+..++.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877765 23356667777777888888888 888877776542 25667777777888888888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 043284 241 RVFGDILDRGWVPDATTYTVLMDGYIKLGR 270 (527)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (527)
+.|+++++.+ +.+...+..+..++...++
T Consensus 555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 8887777653 2235566666666655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-10 Score=93.93 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.....++..+.+.|++++|+..|+++++.+|+ +...+..+..++...|++++|+..++++....| +...+....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIA 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHH
Confidence 34667888999999999999999999887774 778999999999999999999999999877544 333332222
Q ss_pred HH-HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 122 RN-YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 122 ~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.. +...+....|+..+++..+.. |.+...+..+..++...|++++|...|+++........+...+..+..++...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 11 223334445788888887765 4567788888888888888888888888877652111234567778888888888
Q ss_pred hHHHHHHHHhcc
Q 043284 201 VEGAIRVLDEMP 212 (527)
Q Consensus 201 ~~~A~~~~~~~~ 212 (527)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-10 Score=98.18 Aligned_cols=211 Identities=12% Similarity=0.028 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRIEKFNV--QRSVRSL 152 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 152 (527)
.+...+..++..+.+.|++++|+..|+++.+..|..+. ..++..+..++...|++++|+..|+++.+... +....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 46778888999999999999999999999886544222 56788899999999999999999999988642 1224567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHH
Q 043284 153 NTLLNALVQ--------NKRYDLVHLMFKNSRHKFKVVPN-VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTH 223 (527)
Q Consensus 153 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 223 (527)
..+..++.. .|++++|...|+++... .|+ ......+... ..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~--------------~~~~~~----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKI--------------RELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHH--------------HHHHHH----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHH--------------HHHHHH----HHHHH
Confidence 778888888 89999999999998876 233 2222222111 111100 11235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCH-
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDRGWVP--DATTYTVLMDGYIKL----------GRLTDAVKVMDEMEDNGVEPNE- 290 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~- 290 (527)
..+..+|...|++++|+..|+.+++..... ....+..+..+|... |++++|...|+++.+. .|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 677889999999999999999999864221 245677788888866 8999999999999886 3443
Q ss_pred ---HHHHHHHHHHHccCCHHHH
Q 043284 291 ---VTYGVMIEAFCKGKKSGEA 309 (527)
Q Consensus 291 ---~~~~~l~~~~~~~~~~~~a 309 (527)
.....+...+.+.++++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3444555555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-10 Score=93.70 Aligned_cols=166 Identities=9% Similarity=-0.027 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH----------------HHHHHHhcCChhHHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT----------------VIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 140 (527)
+...+...+..+...|++++|+..|+++.+..|. +...+.. +..++...|++++|+..|++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445666677778889999999999888875443 3445555 666666777777777777776
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC--hHHHHHHHHhcccCCCCC
Q 043284 141 EKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD--VEGAIRVLDEMPSMGMVP 218 (527)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p 218 (527)
.+.. |.+..++..+..++...|++++|...|++.... .+.+...|..+..+|...|. .+.+...+...... .|
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TK 155 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cc
Confidence 6654 455666666667777777777777777766654 22345556666665544432 23344444443321 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 219 NLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
....+.....++...|++++|...|++.++.
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222333344445556666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=83.99 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|..+|+.+++..| .+...+..++..+...|++++|...++++.+..+. +...+..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 78 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHH
Confidence 34566666677777777777777665544 24556666666666677777777777766654322 44556666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666677777777776666553 34455666666666666666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-09 Score=82.28 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 363 SSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+..+...+...|++++|..+++++....+.+...+..++..+...|++++|..+++++...+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555666666777777777766644444556666666677777777777777777766542 23455666666677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++....
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77777777777776642 2245566667777777777777777777765544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=98.03 Aligned_cols=166 Identities=11% Similarity=-0.021 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH-HHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS-LNTL 155 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 155 (527)
+...+..+...+...|++++|...|+++.+..|. +...+..+...+...|++++|+..++++.... |+... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 4556777777777778888888888877775444 55677777777778888888888887776653 34332 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CCHHHHHHHHHHHHhcC
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PNLVTHTTILGGYVWRG 234 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~ 234 (527)
...+...++.+.|...+++.... .+.+...+..+...+...|++++|++.|.++.+.... .+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33455666777777777777665 2345667777777778888888888888777765321 12456777777777788
Q ss_pred ChHHHHHHHHHHHH
Q 043284 235 DIENAKRVFGDILD 248 (527)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (527)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 87777777776543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-09 Score=90.16 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSV---RSL 152 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 152 (527)
+...+..++..+...|++++|+..|+++.+..|..+ ....+..++.++.+.|++++|+..|+++.+... .+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHH
Confidence 456778888889999999999999999988645433 245788889999999999999999999988752 222 245
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 153 NTLLNALVQ------------------NKRYDLVHLMFKNSRHKFKVVPN-VFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 153 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
..+..++.. .|++++|...|+++... .|+ ...+....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----------HHHHHH--
Confidence 555555554 45666777777766654 222 22222111100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP--DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNG 285 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 285 (527)
......+...+.+.|++++|+..|+.+++..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778899999999999999999873221 12568889999999999999999999998874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-08 Score=85.84 Aligned_cols=230 Identities=7% Similarity=0.007 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----Hhc---CCHh
Q 043284 272 TDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK--KSGEARNLLDDMLQRKYVPSSALCCKVIDLL----CEE---GKVE 342 (527)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 342 (527)
++|+++++++...+ +-+...|+.-...+...+ +++++++.++.++..++. +..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34444444444432 112333444444444444 555555555555544322 222232222222 222 4566
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 043284 343 DACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIW--EAKKLFDEFERGSIPSLLTYNTLIAGMCESAE------LTEAG 414 (527)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 414 (527)
+++.+++.+.+.+++ +..+++.-...+.+.|.++ +++..++++....+.|...|+.....+...++ +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666665433 5555555555555566655 66666666655556666677666666666555 77888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043284 415 RLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE-GIRILEEMLDKG--CFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT 491 (527)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (527)
+.+++++... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..++.++.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888777663 3356677777777777776433 445666655432 12366777888888888888888888888887
Q ss_pred h-CCCCChhhHHHHH
Q 043284 492 A-SGSVESDSWNFLL 505 (527)
Q Consensus 492 ~-~~~~~~~~~~~ll 505 (527)
. .+|.....|+...
T Consensus 286 ~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 286 SKYNPIRSNFWDYQI 300 (306)
T ss_dssp HTTCGGGHHHHHHHH
T ss_pred hccChHHHHHHHHHH
Confidence 6 4666666666544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=110.32 Aligned_cols=172 Identities=11% Similarity=0.026 Sum_probs=103.6
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 043284 125 GLAGRPELAVKTFLRIE--------KFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALC 196 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (527)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|+..|++..+. .+.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 55666777777776666 332 344556666666666677777777777666654 2234556666666666
Q ss_pred cCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 043284 197 KKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 197 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
..|++++|++.|++..+... -+...+..+..++.+.|++++ ++.|+++++.+ +.+...|..+..++.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777766665431 245566666666666777766 66666666653 2255566666666777777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 043284 277 VMDEMEDNGVEPN-EVTYGVMIEAFCKGK 304 (527)
Q Consensus 277 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 304 (527)
.|+++.+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 77666654 233 445555555554433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-08 Score=84.73 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 043284 239 AKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK----KSGEARNLLD 314 (527)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 314 (527)
|++.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455544443 44455555555555555555555555555443 34444444444444 3 4555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhC
Q 043284 315 DMLQRKYVPSSALCCKVIDLLCE----EGKVEDACELWKRLLRK 354 (527)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 354 (527)
+..+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 554432 33333344444433 44445555555544443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-10 Score=89.45 Aligned_cols=145 Identities=11% Similarity=-0.014 Sum_probs=91.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 85 IHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
+..+...|++++|+..++......|. +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445567777777777777654222 34456667777777788888888887777765 4567777777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHH-HHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 165 YDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRV-LDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+++|...|++..+. .+.+...|..+...|.+.|++++|.+. +++..+... -+...|......+...|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 77777777777664 222456677777777777777665544 455555431 245555555555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=89.42 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH-HHc
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA-LCK 197 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 197 (527)
.....+...|++++|+..|++..+.. |.+...+..+..++...|++++|...|++.... .|+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 34444444555555555555444432 233444444455555555555555555444433 1122211111111 111
Q ss_pred CCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCChhHHHH
Q 043284 198 KDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP-DATTYTVLMDGYIKLGRLTDAVK 276 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 276 (527)
.+....|+..|++..+.. +-+...+..+..++...|++++|...|+++++....+ +...+..+..++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455555554432 1134555555666666666666666666665553221 23455555666666666666666
Q ss_pred HHHHHH
Q 043284 277 VMDEME 282 (527)
Q Consensus 277 ~~~~~~ 282 (527)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=85.57 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=80.5
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 325 SALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEG----KIWEAKKLFDEFERGSIPSLLTYNTL 400 (527)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (527)
...+..+...+...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|++.... .+...+..+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~~L 91 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEIVL 91 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 3334444444444444455555544444433 33334444444443 3 455555555554221 244445555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043284 401 IAGMCE----SAELTEAGRLWDDMVEKGVE-PNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLI 471 (527)
Q Consensus 401 ~~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 471 (527)
...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|+.+|++..+. ..+...+..|.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg 169 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAG 169 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 555544 55566666666665544211 014455555555555 55666666666666654 12333455555
Q ss_pred HHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 043284 472 EGLYES-G-----NEGEVGKVVSMATASGS 495 (527)
Q Consensus 472 ~~~~~~-g-----~~~~A~~~~~~~~~~~~ 495 (527)
..|... | +.++|..+++++.+.+.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 555432 2 56666666666665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-09 Score=104.63 Aligned_cols=154 Identities=8% Similarity=-0.044 Sum_probs=112.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
.|++++|++.|+++++..| .+...+..++..+...|++++|.+.|+++.+..|. +...+..+..++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP---QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 4788899999998877766 36778888899999999999999999998886443 667888888889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC---CChHHHHHHHHh
Q 043284 134 VKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK---DDVEGAIRVLDE 210 (527)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~ 210 (527)
++.+++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999988875 566788888889999999999999999988776 233567788888888888 889999999988
Q ss_pred cccCC
Q 043284 211 MPSMG 215 (527)
Q Consensus 211 ~~~~~ 215 (527)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 87764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-09 Score=80.68 Aligned_cols=108 Identities=11% Similarity=-0.007 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.++..+..+.+.|++++|++.|+++++.+| .+..+|..++.++...|++++|+..|+++.+..|. +...|..+..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~ 89 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hhHHHHHHHH
Confidence 356677777777777777777777777666 36667777777777777777777777777765443 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
++...|++++|++.|++..+.. |.+..++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 7777777777777777777764 34455444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.3e-09 Score=92.67 Aligned_cols=159 Identities=10% Similarity=0.007 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLI-QGFC 440 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~ 440 (527)
.+..+...+...|++++|...|+++....|.+...+..++..+...|++++|...++++... .|+........ ..+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 33344444445555555555555554444444445555555555555555555555544433 23322211111 1233
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--hhhHHHHHHHH--HhchhhhH
Q 043284 441 KIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE--SDSWNFLLTRI--VSDLDSGA 516 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ll~~~--~~~~~~a~ 516 (527)
..++.++|+..+++++... +.+...+..++..+...|++++|...++++.+..+.+ ...+..+...+ .|+.+.|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 4444444555555554432 1233444455555555555555555555555544433 33444444322 24444555
Q ss_pred HHHHHHH
Q 043284 517 GALDELL 523 (527)
Q Consensus 517 ~~~~~~l 523 (527)
..+.+.+
T Consensus 276 ~~~r~al 282 (287)
T 3qou_A 276 SXYRRQL 282 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.2e-09 Score=102.02 Aligned_cols=151 Identities=7% Similarity=-0.082 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLF 383 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (527)
|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555555554443211 334444445555555555555555555554432 23444444555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHH
Q 043284 384 DEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI---GNAKEGIRILEEMLD 457 (527)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 457 (527)
++.....+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.++++++
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55433334444455555555555555555555555544431 11234444444444444 555555555555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-09 Score=82.69 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=95.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC
Q 043284 32 TPPIKPWPQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIK 111 (527)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 111 (527)
.++..++.++..+..++..+...|++++|+..|+.+++..| .+...+..++..+...|++++|...++++.+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~- 82 (133)
T 2lni_A 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT- 82 (133)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-
Confidence 34444455556778888889999999999999999877665 36778888888888889999999999888875443
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK 163 (527)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (527)
+...+..+..++...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 56778888888888888888888888887764 344556666666665544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.9e-09 Score=94.92 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=118.5
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
..|++++|.++++++.+..+. + + +...+++++|...|.++ +..|...|++++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQ 54 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHH
Confidence 467888999999888654332 0 0 00034555555555443 223444555555
Q ss_pred HHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCC-CChhhHHHHHHHHHcCCChHH
Q 043284 133 AVKTFLRIEKFNV---QR--SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKF---KVV-PNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 133 A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~ 203 (527)
|.+.|.+..+... .+ -..+|..+..+|...|++++|+..|++..... +.. ....+++.+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 5555555433210 01 12345555556666666666666555543321 100 013455566666666 66766
Q ss_pred HHHHHHhcccCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCChhH
Q 043284 204 AIRVLDEMPSMGMVP-----NLVTHTTILGGYVWRGDIENAKRVFGDILDR----GWVPD-ATTYTVLMDGYIKLGRLTD 273 (527)
Q Consensus 204 A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~ 273 (527)
|+..|++..+..... ...++..+...+...|++++|+..|++.++. +..+. ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 666666654421000 1345666677777777777777777766653 11111 1245555666666777777
Q ss_pred HHHHHHHHHHCCCCC-CH---HHHHHHHHHHHccCCHHHHHH
Q 043284 274 AVKVMDEMEDNGVEP-NE---VTYGVMIEAFCKGKKSGEARN 311 (527)
Q Consensus 274 a~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~ 311 (527)
|...|++.. ..... +. .....++..+ ..++.+.+.+
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777777776 32110 11 1233344444 4566655555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-07 Score=81.75 Aligned_cols=177 Identities=7% Similarity=-0.032 Sum_probs=134.6
Q ss_pred HHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc-
Q 043284 50 MIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA- 127 (527)
Q Consensus 50 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 127 (527)
.....+..++|++.++.++..+|. +..+|+....++...| .+++++..++.+....|- +..+|..-..++...
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhc
Confidence 334556778999999999999884 7889999988888888 599999999999987554 667787766666666
Q ss_pred C-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 128 G-RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD--------LVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 128 g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
+ +++++++.++++.+.. +.+..+|+....++.+.|.++ ++++.++++... .+-|...|+.....+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTS
T ss_pred CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 6 8899999999999876 678888887777776666666 888888888776 344677788777777776
Q ss_pred CC-------hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 199 DD-------VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 199 ~~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+. ++++++.++++..... -|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 65 5777777777766542 366677666666655554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=88.00 Aligned_cols=190 Identities=11% Similarity=-0.112 Sum_probs=92.2
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHH-------HHHHHhcCCchHHHHHHHHhhhCCCCCcC------------
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSI-------IHKLARARAFDAVESLLTELKQNPEIKCG------------ 113 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 113 (527)
..+++..|++.|.++...+|+ ....|..+ ...+.+.++..++...+.+.....|....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 467777777777777777664 55577766 45555555556666555555543111100
Q ss_pred -------hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--
Q 043284 114 -------ENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN-- 184 (527)
Q Consensus 114 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 184 (527)
..+.......+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccH
Confidence 1222334445555555555555555555432 22113344444555555555555555433321 0110
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 185 VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN--LVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12344444555555555555555555443211122 123333444444555555555555555444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-09 Score=83.96 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+.+.|++++|+..|+++....|. +...|..+..++...|++++|++.|++..+.. |.++..|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 4556666666666677777777777766665443 55566666666667777777777777666654 44556666666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc
Q 043284 157 NALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+|...|++++|...|++....
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666677777777666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=91.04 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC---CHHHHHHHHHHHHhcCCchHHHHHHHHhhhC---CCCC-cChhh
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH---NYDTYHSIIHKLARARAFDAVESLLTELKQN---PEIK-CGENL 116 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-~~~~~ 116 (527)
+...+..+...|++++|...|.+++...+.... ...+|..++..+...|++++|+..|+++.+. .+.. .....
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445555556666665555555433221110 1224455555555555555555555554432 0000 01223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 117 FITVIRNYGLAGRPELAVKTFLRIEKFNVQR-----SVRSLNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 117 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
+..+...|.. |++++|++.|++..+..... ...++..+..++...|++++|+..|++..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444544 55555555555444321000 02334444444444555555554444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-08 Score=79.52 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+...|++++|...|+.+++..| .+..++..++..+...|++++|...++++.+..|. +...+..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence 3456677777888888888888888877665 35677788888888888888888888887775433 556777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNT--LLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
.++...|++++|+..|++..+.. +.+...+.. .+..+...|++++|...+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 78888888888888888877764 344444433 3333666777777777776554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-09 Score=94.18 Aligned_cols=192 Identities=6% Similarity=-0.103 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+...|++++|+..|+.+++..|. +...|..++.++.+.|++++|+..++++.+..|. +...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 34667888888889999999999888877663 6778888888888888999998888888876443 667788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
.++...|++++|+..|++..+.+. .+...+...+....+. .++......... ....+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKKRWNSIEER--RIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHHHHHHHHHT--CCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHHHHHHHHHH--HHhhhHHHHHHHHHH--HHHHH
Confidence 888888888888888888776531 1111111111111111 111111111111 123333333333222 25777
Q ss_pred HHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLV-THTTILGGYVWR-GDIENAKRVFGDILD 248 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 248 (527)
++|++.++...+.. |+.. ....+...+.+. +.++++.++|..+.+
T Consensus 152 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777766642 4432 222333333333 456667777766654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-07 Score=80.50 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----CC--HHH
Q 043284 328 CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDN-----AISSTIIHWLCKEGKIWEAKKLFDEFERGSI----PS--LLT 396 (527)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~--~~~ 396 (527)
+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++...... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677788888888888777765322111 1233455566777889999998888732211 11 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HH
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEK-GVEPN-----VFTYNMLIQGFCKIGNAKEGIRILEEMLDK----GCFPN-KT 465 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~ 465 (527)
|+.++..|...|++++|...+++..+. ...|+ ..++..+...|...|++++|+..++++++. +.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888999999999999999999988732 00122 257888889999999999999999998753 11111 56
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043284 466 SFSLLIEGLYESGNEGEV-GKVVSMATA 492 (527)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 492 (527)
++..++.+|.+.|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788899999999999999 777887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=80.66 Aligned_cols=110 Identities=8% Similarity=0.061 Sum_probs=76.8
Q ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 63 IFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
.|++++...| .+...+..++..+...|++++|+..|+++....|. +...|..+..++...|++++|+..|++...
T Consensus 9 ~~~~al~~~p---~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNEISS---DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTTCCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHcCCH---hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3555544443 35556777777777777777877777777765443 566677777777777777778777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 143 FNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+ +.+...+..+..++...|++++|...|++....
T Consensus 84 l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 84 MD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 455667777777777777777777777777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-07 Score=79.44 Aligned_cols=126 Identities=9% Similarity=-0.023 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|+..|+.++ .++..++..++..+...|++++|+..|+++.+..|. +...+..+..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~ 80 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHH
Confidence 4567888889999999999999884 247789999999999999999999999999886443 66788899999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSV----------------RSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+...|++++|++.|++..+.. +.+. .++..+..++...|++++|...|++....
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999998864 2222 67888888899999999999999888764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-07 Score=81.65 Aligned_cols=163 Identities=16% Similarity=0.080 Sum_probs=93.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHhcccCCCC-CC----HHHHHH
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNV----FTCNILIKALCKKDDVEGAIRVLDEMPSMGMV-PN----LVTHTT 225 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 225 (527)
.+..+...|++++|..++++........|+. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556667777777777777766543222331 12334555666667777777777776653211 12 225666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 043284 226 ILGGYVWRGDIENAKRVFGDILDR-----GWVP-DATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----GVEPN-EVTYG 294 (527)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 294 (527)
+..+|...|++++|+..|+++++. +..+ ...++..+..+|.+.|++++|+..+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777776631 1111 1235566666777777777777776665532 11111 34556
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHH
Q 043284 295 VMIEAFCKGKK-SGEARNLLDDML 317 (527)
Q Consensus 295 ~l~~~~~~~~~-~~~a~~~~~~~~ 317 (527)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466666665544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-08 Score=84.30 Aligned_cols=189 Identities=8% Similarity=-0.088 Sum_probs=115.6
Q ss_pred hcCCchHHHHHHHHhhhCCCCCcChhhHHHH-------HHHHHhcCChhHHHHHHHHHHhc------------CCC----
Q 043284 90 RARAFDAVESLLTELKQNPEIKCGENLFITV-------IRNYGLAGRPELAVKTFLRIEKF------------NVQ---- 146 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~---- 146 (527)
..++...|.+.|.++....|. ....|..+ ...+...++..+++..+..-... |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 568888888888888876554 45567766 45566666666666666555542 100
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC--H
Q 043284 147 ----RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN--L 220 (527)
Q Consensus 147 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~ 220 (527)
.-......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00123344556677777777777777776643 2333255555566777777777777777555431 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 221 VTHTTILGGYVWRGDIENAKRVFGDILDRGWVPD--ATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666677777777777777777764332132 234555666677777777777777777765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-08 Score=73.98 Aligned_cols=98 Identities=5% Similarity=0.000 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+...+..+.+.|++++|++.|+++.+..|. +..+|..+..++...|++++|++.|++.++.+ +.+..+|..+..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 456777888888888888888888888876444 66788888888888888888888888888775 566778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 043284 158 ALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~ 178 (527)
++...|++++|.+.|++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 888888888888888888765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-06 Score=76.62 Aligned_cols=242 Identities=11% Similarity=0.014 Sum_probs=122.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-CHHHHH
Q 043284 234 GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG-RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG-K-KSGEAR 310 (527)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 310 (527)
+..++|+++++.++..+.. +..+|+.-..++...| ++++++..++.+..... .+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3344566666666555322 4445555555555555 35555555555555432 2444454444444333 3 445555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 043284 311 NLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGS 390 (527)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 390 (527)
++++++.+.+.. +...|..-..++.+.+.++. .+ ...+.++++.++++....
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhC
Confidence 555555443322 33344333333333222220 00 000125556666654445
Q ss_pred CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH------------------
Q 043284 391 IPSLLTYNTLIAGMCESAE-------LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNA------------------ 445 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~------------------ 445 (527)
+.|...|+.....+.+.++ ++++++.+++++... +-|...|+.+-..+.+.|+.
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 5566666666666655554 566777776666542 22455565555555444432
Q ss_pred --HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCChhhHHHHHH
Q 043284 446 --KEGIRILEEMLDKG-----CFPNKTSFSLLIEGLYESGNEGEVGKVVSMAT-ASGSVESDSWNFLLT 506 (527)
Q Consensus 446 --~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ll~ 506 (527)
....+...++...+ -.++...+..+++.|...|+.++|.++++.+. +.++.....|+...+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 22222222332221 13566778888899999999999999999986 445555556665444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-07 Score=78.49 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+..++..+...|++++|...|+++.. ++...+..+..++...|++++|++.|++..+.. +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 456677788889999999999988742 266788889999999999999999999998875 56778888899999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCC--------------ChhhHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVP--------------NVFTCNILIKALCKKDDVEGAIRVLDEMPSMG 215 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 215 (527)
...|++++|...|++........+ ....+..+..++.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998876521111 12567777778888888888888888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-08 Score=78.10 Aligned_cols=128 Identities=6% Similarity=-0.006 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|++.+++..+.. +.+..++..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 35666677777777777777777777765333 55667777777777777777777777777664 4556677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCChhhH--HHHHHHHHcCCChHHHHHHHHhc
Q 043284 159 LVQNKRYDLVHLMFKNSRHKFKVVPNVFTC--NILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
+...|++++|...|++..... +.+...+ ..++..+...|++++|++.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777776552 1233333 23333355566666666666543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=77.97 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++..+.+.|++++|+..|+++++.+| .++..|..++.++...|++++|+..|+++.+..|. +...|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHH
Confidence 345678899999999999999999999999888 48889999999999999999999999999987655 6678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVR 150 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 150 (527)
+..+|...|++++|+..|++..+.. |+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999999874 5543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.5e-08 Score=79.52 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=100.2
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH-HHhcCCh
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN-YGLAGRP 130 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 130 (527)
...|++++|+..++.+++..| .+...|..++..+...|++++|...|+++.+..|. +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCc
Confidence 467899999999999988776 47789999999999999999999999999886443 56778888888 7788998
Q ss_pred --hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 131 --ELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 131 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
++|+..+++..+.+ +.+...+..+..++...|++++|...|++....
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998875 566788888999999999999999999998875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-08 Score=89.25 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+...|++++|+..|+++.+..|. +...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567778888888888888888888888875443 66777888888888888888888888888765 45677788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc
Q 043284 157 NALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.++...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-07 Score=72.55 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 75 SHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
+.+...+..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|++.+++..+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 455778888899999999999999999998876443 66788888888999999999999999988875 456788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC
Q 043284 155 LLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD 199 (527)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (527)
+..++...|++++|...|++.... .+.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 888899999999999999888765 2224455666666655444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=73.13 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=68.2
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+...|++++|+..|+++++..| .+...+..++..+...|++++|...++++.+..|. +...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 88 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHHHHHHH
Confidence 445566666666666666666666655544 24556666666666666666666666666654322 3455556666
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKR 164 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (527)
.+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666665553 3345555555555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-07 Score=83.07 Aligned_cols=61 Identities=7% Similarity=-0.045 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILDR----GWVPD-ATTYTVLMDGYIKLGR-LTDAVKVMDEME 282 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 282 (527)
++..+..+|.+.|++++|+..+++.++. +..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4455555555555555555555554432 11111 3455555556666663 456665555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-07 Score=82.23 Aligned_cols=167 Identities=7% Similarity=0.005 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hh
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS-----VRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VF 186 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 186 (527)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++.........+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444555555666666666555554321110 012233444555556666666666655432111111 23
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcccC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CH
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEMPSM-GMVPN-----LVTHTTILGGYVWRGDIENAKRVFGDILDRG----WVP-DA 255 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 255 (527)
+++.+...|...|++++|+..|++..+. ...|+ ..++..+..+|...|++++|+..+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666666666666666666665411 00111 1456666667777777777777776665431 111 14
Q ss_pred HhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043284 256 TTYTVLMDGYIKLGRLTDA-VKVMDEME 282 (527)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 282 (527)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566677777777777777 55566554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.6e-08 Score=73.41 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=75.4
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-----hhhH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-----ENLF 117 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~ 117 (527)
.++.++..+.++|++++|+..|+++++.+|. +..+|..++.++...|++++|++.++++.+..|..+. ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3567888888888888888888888887773 6778888888888888888888888887764221111 2355
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSL 152 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 152 (527)
..+..++...|++++|++.|++.+.. .|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66677777778888888888777664 3555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-07 Score=70.71 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|++.|+.+++..| .+..++..++..+...|++++|...++++.+..+. +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~ 86 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHH
Confidence 34444555555555555555555544433 23444555555555555555555555555443221 33344444555
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 043284 124 YGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-08 Score=77.20 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=84.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 043284 382 LFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCF 461 (527)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 461 (527)
.|+++....+.+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++++... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444444566677777888888888888888888887652 3356677778888888888888888888888753 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
.+...+..++.++...|++++|.+.|+++.+..+.++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 2456777788888888888888888888877665433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.1e-08 Score=80.90 Aligned_cols=156 Identities=12% Similarity=-0.037 Sum_probs=93.3
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCH
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFER------GSIPSLLTYNTLIAGMCESAEL 410 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~ 410 (527)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++... ..+.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44566666664433322 2223445556666666667777777766666522 1112345667777777778888
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCC
Q 043284 411 TEAGRLWDDMVEK----GVEP--NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC-FPNK----TSFSLLIEGLYESGN 479 (527)
Q Consensus 411 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~ 479 (527)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+. .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888777766543 1111 133466677777788888888888877763200 0121 235677778888888
Q ss_pred hhHHHHHHHHHHhC
Q 043284 480 EGEVGKVVSMATAS 493 (527)
Q Consensus 480 ~~~A~~~~~~~~~~ 493 (527)
+++|.+.++++.+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.6e-08 Score=75.79 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+...|++++|+..|+++....|. +...|..+..++...|++++|+..|++....+ +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3445555555666666666666666666554332 44555566666666666666666666666554 34455555666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc
Q 043284 157 NALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.++...|++++|...|+.....
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=86.46 Aligned_cols=132 Identities=12% Similarity=0.009 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC------------CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH------------NYDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
..+..++..+.+.|++++|+..|+++++..|.... ...+|..+..++.+.|++++|+..++++.+..|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35677888899999999999999999887774210 046777888888888888888888888877644
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 043284 110 IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLV-HLMFKNSR 176 (527)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 176 (527)
. +...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|+.+++ ..+|+.|.
T Consensus 228 ~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N--NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 56677788888888888888888888887765 45667777777777777777777 34555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=93.55 Aligned_cols=152 Identities=7% Similarity=-0.022 Sum_probs=102.9
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-------------hhhHHHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-------------ENLFITV 120 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l 120 (527)
.+++++|+..|+..+...| .+...+..++..+.+.|++++|+..|+++.+..+..+. ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p---~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL---EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 4566777777666544333 24667888888899999999999999988876443211 3566777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..++.+.|++++|+..+++.++.. +.+..++..+..++...|++++|+..|++.... .+.+...+..+..++.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777777765 456667777777777777777777777777654 22345566666666666666
Q ss_pred hHHH-HHHHHhc
Q 043284 201 VEGA-IRVLDEM 211 (527)
Q Consensus 201 ~~~A-~~~~~~~ 211 (527)
.++| ...|..|
T Consensus 280 ~~~a~~~~~~~~ 291 (336)
T 1p5q_A 280 QLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6666 3344444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.8e-08 Score=81.02 Aligned_cols=158 Identities=12% Similarity=0.042 Sum_probs=94.6
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC---C-CCCcChhhHHHHHHHHHhc
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN---P-EIKCGENLFITVIRNYGLA 127 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ 127 (527)
...|++++|.+.++.+.. +| .....++..+...+...|++++|...++++.+. . ..+....++..+...+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 467888888886555522 22 235667888888888888888888888887762 1 1112334566777778888
Q ss_pred CChhHHHHHHHHHHhc----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHc
Q 043284 128 GRPELAVKTFLRIEKF----NVQ--RSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN----VFTCNILIKALCK 197 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 197 (527)
|++++|++.+++..+. +-. ....++..+...+...|++++|...+++.........+ ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 8888888888776654 101 11334666667777777777777777665532110111 1224455555666
Q ss_pred CCChHHHHHHHHhcc
Q 043284 198 KDDVEGAIRVLDEMP 212 (527)
Q Consensus 198 ~~~~~~A~~~~~~~~ 212 (527)
.|++++|.+.+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 666666666555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=76.95 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=90.4
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--HH
Q 043284 371 CKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQG-FCKIGNA--KE 447 (527)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 447 (527)
...|++++|...++......+.+...|..++..|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345677777777777755566677788888888888888888888888877652 2355667777777 6677887 88
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChh
Q 043284 448 GIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESD 499 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 499 (527)
|...++++++.. +.+...+..++.++...|++++|...++++.+..+.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 888888888753 224566777888888888888888888888887765543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=83.87 Aligned_cols=148 Identities=9% Similarity=-0.070 Sum_probs=79.8
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC--------------hhhH
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG--------------ENLF 117 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~ 117 (527)
...|++++|.+.++......+ .....+..++..+...|++++|...|+++.+..+..++ ..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV---QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -------CCCSGGGCCHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344555555555543321111 12345566666666777777777777776664332111 1456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHc
Q 043284 118 ITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCK 197 (527)
Q Consensus 118 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (527)
..+..++...|++++|+..+++..+.. +.+..++..+..++...|++++|...|++.... .+.+...+..+..++..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 666666667777777777777666654 445666666666677777777777777666554 12244455555555555
Q ss_pred CCChHHHH
Q 043284 198 KDDVEGAI 205 (527)
Q Consensus 198 ~~~~~~A~ 205 (527)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55554444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=74.12 Aligned_cols=99 Identities=8% Similarity=-0.105 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+.+.|++++|+..|+.+++.+| .+...|..++.++...|++++|+..|+++....|. +...+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 34567788999999999999999999998887 47889999999999999999999999999987554 66788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
..++...|++++|++.|++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.6e-07 Score=68.62 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+...|++++|.+.++++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 456666777777777777777777777664332 45566667777777777777777777776654 445666667777
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 043284 158 ALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+...|++++|...|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-07 Score=70.31 Aligned_cols=119 Identities=13% Similarity=0.005 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
+...+..++..+...|++++|...|+++.+..|. +...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3456666677777777777777777777664332 45566667777777777777777777776654 34566666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
.++...|++++|...|++.... .+.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 7777777777777777776654 12244555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=74.36 Aligned_cols=116 Identities=11% Similarity=0.025 Sum_probs=87.3
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
.+...+..++..+...|++++|+..|+.+++..|........+..+...+...|++++|+..++++.+..+. +...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHHHH
Confidence 344567788889999999999999999998765521111677888888888999999999999888875443 566778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
.+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 88888888899999999998888764 344444444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-07 Score=70.95 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+.+.|++++|+..|+.+++..|. +...|..++.++...|++++|+..++++.+..|. +...+..+..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 81 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Confidence 456677777777777777777777776663 5667777777777777777777777777765443 55667777777
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 043284 124 YGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...|++++|++.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-07 Score=69.25 Aligned_cols=102 Identities=13% Similarity=0.027 Sum_probs=78.6
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-hhhHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-ENLFITVI 121 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 121 (527)
.+..++..+...|++++|+..|+.+++..|+......++..++.++...|++++|...|+++.+..|..+. ...+..+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 45567888888999999999999888777754433467888888888889999999999888876443211 45677788
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
.++...|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888888888888888888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-05 Score=70.43 Aligned_cols=162 Identities=11% Similarity=-0.016 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------------
Q 043284 341 VEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK-IWEAKKLFDEFERGSIPSLLTYNTLIAGMCES------------ 407 (527)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 407 (527)
+++++.+++.+.+.++. +...|+.-...+...|. +++++..++.+....+.|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 44444444444444322 33333333333334444 34444444444333444444444443333332
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 043284 408 --AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI-----------GNAKEGIRILEEMLDKGCFPNKTSFSLLI--- 471 (527)
Q Consensus 408 --~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--- 471 (527)
+.++++++.+++..... +-|...|+.+-..+.+. +.++++++.++++.+. .||. .|..+.
T Consensus 205 ~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~ 280 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIIL 280 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHH
Confidence 33566666666666542 22445555444444333 3577888888888874 4654 222222
Q ss_pred --HHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHH
Q 043284 472 --EGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR 507 (527)
Q Consensus 472 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~ 507 (527)
.+....|..+++...+.++.+.+|-...-|..+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 222346788899999999988887777677776653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-05 Score=70.94 Aligned_cols=182 Identities=7% Similarity=-0.062 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC-hHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK--RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-VEGAIR 206 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~ 206 (527)
+++++..++.+...+ +.+..+|+.-..++...| .+++++.+++.+... .+-|...|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 344555555555443 344445554444444444 245555555555443 22244444444444444444 355555
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWR--------------GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKL---- 268 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 268 (527)
.++++.+..+ -|...|+.....+... +.++++++.+...+... +-|...|+.+--.+.+.
T Consensus 167 ~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence 5555554432 2444444444333332 23556666666666553 23555555443333333
Q ss_pred -------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHccCCHHHHHHHHHHHHHc
Q 043284 269 -------GRLTDAVKVMDEMEDNGVEPNEVTYGVMIE-----AFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 269 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~ 319 (527)
+.++++++.++++.+. .|+. .|..+.. .....+..+++...+.++.+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3466777777777765 3443 2322111 112345666777777777764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=71.56 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 41 RLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
...+..++..+.+.|++++|+..|+++++..|. +..+|..++.++...|++++|+..|+++.+..|. +...+..+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~l 91 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAAL 91 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 345678889999999999999999999988874 7889999999999999999999999999887554 66788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
..++...|++++|+..+++..+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.3e-07 Score=66.84 Aligned_cols=96 Identities=19% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+...|++++|...|+.+++..| .+...+..++..+...|++++|...++++.+..|. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~ 81 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHHHHHHHHHH
Confidence 34555566666666666666666655544 24555666666666666666666666666554322 34455555666
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 043284 124 YGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666666666666666665543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-07 Score=67.46 Aligned_cols=102 Identities=9% Similarity=0.009 Sum_probs=76.3
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++..+...|++++|+..|+++++..| .+...+..++..+...|++++|...|+++.+..+...+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 345566778888888888888888888877665 35667788888888888888888888888775332124567777
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhcC
Q 043284 120 VIRNYGLA-GRPELAVKTFLRIEKFN 144 (527)
Q Consensus 120 l~~~~~~~-g~~~~A~~~~~~~~~~~ 144 (527)
+..++... |++++|++.+++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77888888 88888888888877664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-07 Score=68.69 Aligned_cols=98 Identities=10% Similarity=-0.020 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
...+..++..+.+.|++++|+..|+++.+..|. +...|..+..++...|++++|+..+++..+.+ +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456777778888888888888888888776443 56778888888888888888888888888765 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 043284 158 ALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~ 178 (527)
++...|++++|...|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=69.06 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043284 365 TIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMV 421 (527)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (527)
.+...+.+.|++++|+..|++.....|.+...|+.+..+|...|++++|+..+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444433333444444444444444444444444444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-07 Score=72.90 Aligned_cols=100 Identities=6% Similarity=-0.121 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+..++..+.+.|++++|+..|+++++..|. +...|..+..++...|++++|+..|+++.+..|. +...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 3445677888888888888888888888877763 6778888888888888888888888888876443 5667778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+..++...|++++|++.|++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=72.50 Aligned_cols=99 Identities=8% Similarity=-0.114 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
++..+..++..+...|++++|+..|+.+++..|. +...+..++.++...|++++|...++++.+..|. +...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHHHHHH
Confidence 3445667777777777777777777777766653 5667777777777777777777777777765433 5566677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..++...|++++|+..|++..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777777777776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.9e-07 Score=72.62 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
.+...+..+...+...|++++|+..|+++.+..|. +...|..+..++...|++++|+..|++..+.. +.+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35667888999999999999999999999886544 67788899999999999999999999999876 5678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..++...|++++|...|++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=83.65 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC--------------HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN--------------YDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
--.-+..+...|++++|++.|..+++..+..... ..++..++..|...|++++|.+.+..+.+..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3345677788889999999988887665542211 12366677777777788777777777665311
Q ss_pred CCcCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 110 IKCGE----NLFITVIRNYGLAGRPELAVKTFLRIEKF----NVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 110 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
...+. .+...+...+...|++++|.++++..... +..+ -..++..+...+...|++++|..+++++.....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 11111 11222233333456667776666655432 1111 133455556666666666666666655443211
Q ss_pred CCC----ChhhHHHHHHHHHcCCChHHHHHHHHhc
Q 043284 181 VVP----NVFTCNILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 181 ~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
... ....+..++..|...|++++|..++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 000 1233444445555555555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-07 Score=75.88 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=102.5
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCC--CC-----------HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFS--HN-----------YDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
.+..++..+...|++++|+..|+.+++..|... .. ...+..+..++...|++++|+..++++.+..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 467788899999999999999999988766422 01 27889999999999999999999999998644
Q ss_pred CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHh
Q 043284 110 IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH-LMFKNS 175 (527)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~ 175 (527)
. +...+..+..++...|++++|++.|++..+.. +.+..++..+..++...++.+++. ..|..+
T Consensus 120 ~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 120 N--NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 67789999999999999999999999999875 566778888888887777666655 444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-06 Score=64.51 Aligned_cols=109 Identities=9% Similarity=-0.017 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 394 LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEG 473 (527)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 473 (527)
...+..++..+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456667777777778888887777777652 2356667777777777788888888888777643 2245667777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 474 LYESGNEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
+...|++++|.+.++++.+..+.+...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888888888888777766555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-06 Score=67.43 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043284 391 IPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLL 470 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (527)
+.+...+..++..+...|++++|...|++..... +.+...|..+..++...|++++|+..++++++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466777777888888888888888888777652 2346677777778888888888888888887753 2245677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 471 IEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.++...|++++|...++++.+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888887766543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=65.11 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP--NKTSFSL 469 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ 469 (527)
.+...+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++++.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 455667777888888888888888888887753 3356677788888888888888888888888753 22 4677888
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCCCCC
Q 043284 470 LIEGLYES-GNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 470 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 497 (527)
++.++.+. |++++|.+.++++....+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888888 88888888888888777644
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-06 Score=66.82 Aligned_cols=111 Identities=6% Similarity=-0.060 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043284 392 PSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN----VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSF 467 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 467 (527)
.+...+..++..+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..++++++.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46677888888888888888888888888865 555 5677778888888899999999888888753 2356677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 468 SLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
..++.++...|++++|...++++....+.+...+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 88888888899999999999988887766665555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=67.01 Aligned_cols=97 Identities=9% Similarity=0.095 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 043284 397 YNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGC--FPN----KTSFSLL 470 (527)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 470 (527)
+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444444444444444444331 12333444444444444444444444444443210 011 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 043284 471 IEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
+.++.+.|++++|.+.++++....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC
Confidence 445555555555555555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=66.40 Aligned_cols=96 Identities=5% Similarity=-0.025 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.+..++..+.+.|++++|+..|+++.+..|. +...|..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4556666777778888888888777775443 56677777777777788888888887777765 45566777777777
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 043284 160 VQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~ 178 (527)
...|++++|+..|++....
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=67.88 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC----CH-----HHHHHHHHHHHhcCCchHHHHHHHHhhhC-------
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH----NY-----DTYHSIIHKLARARAFDAVESLLTELKQN------- 107 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 107 (527)
+...+..+...|++++|+..|+++++..|..+. +. ..|..+..++.+.|++++|+..++++.+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 466788888999999999999999988886322 22 26666666677777777777776666654
Q ss_pred CCCCcChhhH----HHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 108 PEIKCGENLF----ITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 108 ~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
.|. +...| .....++...|++++|+..|++..+.
T Consensus 94 ~pd--~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQD--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TST--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 332 33455 55666666666666666666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=90.48 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..++..+.++|++++|++.|+++++..|. +..+|..++.++.+.|++++|++.++++.+..|. +...+..+..+|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~ 84 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 34455667889999999999999888763 6788999999999999999999999999887544 667888889999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA--LVQNKRYDLVHLMFK 173 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 173 (527)
...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988865 3445555555555 777888888888887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.4e-07 Score=68.55 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=63.4
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhH
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPEL 132 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 132 (527)
..|++++|+..|+++++..++.+.+..++..++.++...|++++|+..|+++.+..|. +..++..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHH
Confidence 3578888888888887653222245667888888888888888888888888776444 56677778888888888888
Q ss_pred HHHHHHHHHhcC
Q 043284 133 AVKTFLRIEKFN 144 (527)
Q Consensus 133 A~~~~~~~~~~~ 144 (527)
|++.+++.....
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888877653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-07 Score=89.27 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=95.1
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-------------hhhHHHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-------------ENLFITV 120 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l 120 (527)
.+++++|+..|+..+...| .....+..+...+.+.|++++|+..|+++.+..+..+. ..+|..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~---~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL---EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 3455566666555443332 24556777788888888888888888888775332111 3566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 121 IRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 121 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|+..|++.... .+.+...+..+..++.+.++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777777665 455667777777777777777777777776654 22244556666666666666
Q ss_pred hHHHHH-HHHhcc
Q 043284 201 VEGAIR-VLDEMP 212 (527)
Q Consensus 201 ~~~A~~-~~~~~~ 212 (527)
.+++.+ .+..|.
T Consensus 401 ~~~a~~~~~~~~f 413 (457)
T 1kt0_A 401 HNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 665543 344443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=66.55 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcC----hhhHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCG----ENLFIT 119 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~~ 119 (527)
..++..+...|++++|...|+.+++..| .+...+..++..+...|++++|...++++.+..+. ..+ ..++..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555555555555555555554443 23445555555555555555555555555443111 001 334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..++...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 444455555555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=77.14 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHcCCChHHHHHHHHhcccC----CCCC-CHHH
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV----FTCNILIKALCKKDDVEGAIRVLDEMPSM----GMVP-NLVT 222 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~ 222 (527)
+..++..|...|++++|.+.+..+....+..++. .+.+.+...+...|+++.|..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4456666666666666666666655432211111 12233333444566777777776665431 2112 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HH
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDR--GW---VPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN----GVEPN--EV 291 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~ 291 (527)
+..+...+...|++++|..+++++... +. +....++..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888888776543 11 112456777788888888888888888776532 11111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
.+..+...+...+++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566667778888888877776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=70.74 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhccc--------CCC-------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKF--------HPN-------FSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
..+...+..+.+.|++++|+..|+.++.. .|. .+.+...|..+..++.+.|++++|+..++++.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34678899999999999999999999865 111 012345677777777777777777777777777
Q ss_pred CCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 107 NPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
..|. +...|..+..++...|++++|+..|++..+..
T Consensus 92 ~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 REET--NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5443 56677777777777777777777777777654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=82.15 Aligned_cols=132 Identities=9% Similarity=-0.027 Sum_probs=107.8
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC------------CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH------------NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
.+..++..+.+.|++++|+..|+++++..|.... ...+|..+..++.+.|++++|+..++++.+..|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4677889999999999999999999987774210 0578999999999999999999999999987554
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhh
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH-LMFKNSRH 177 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 177 (527)
+...|..+..+|...|++++|+..|++..+.. +.+..++..+..++.+.++.+++. .++..|..
T Consensus 350 --~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 --NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999875 556778888999999999888776 45555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=79.49 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCC-------------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPN-------------FSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
+..++..+.+.|++++|+..|+++++..+. .+.+..+|..+..++.+.|++++|+..++++.+..|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 567888888999999999999988762110 0123445666666666666666666666666665332
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVH 169 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 169 (527)
+...+..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.
T Consensus 306 --~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 --NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666654 334555555555555555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-06 Score=62.75 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS---VRSLNTL 155 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 155 (527)
.+..++..+...|++++|...|+++.+..|..+ ....+..+..++...|++++|+..|+++.+.. +.+ ..++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 455667777888888888888888877544321 11467777888888888888888888887764 333 5667778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 043284 156 LNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..++...|++++|...|+.+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-06 Score=66.29 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 395 LTYNTLIAGMCESAELTEAGRLWDDMVEK--------G---------VEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+...+..+.+.|++++|+..|++.... . -+.+...|..+..+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 0 011235677888888899999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 458 KGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 458 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
.+ +.+...+..++.++...|++++|...|+++....|.+...+...+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 53 2356778888999999999999999999998888766634444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=83.00 Aligned_cols=124 Identities=6% Similarity=-0.004 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+..++..+.+.|++++|++.|+++.+..|. +...+..+..++.+.|++++|++.+++..+.. +.+..++..+..++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455667889999999999999986444 67889999999999999999999999999986 567889999999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH--HHcCCChHHHHHHHH
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA--LCKKDDVEGAIRVLD 209 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 209 (527)
..|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988762 2234455555555 888899999999998
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=69.27 Aligned_cols=134 Identities=12% Similarity=-0.006 Sum_probs=72.4
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC---HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC---C-CcChh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN---YDTYHSIIHKLARARAFDAVESLLTELKQNPE---I-KCGEN 115 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~~ 115 (527)
.+..++..+...|++++|+..++.+++..+..... ..++..+...+...|++++|...++++.+..+ . .....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34566677777777777777777765443211111 13566666667777777777777766654311 0 00123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 116 LFITVIRNYGLAGRPELAVKTFLRIEKFN----VQ-RSVRSLNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 116 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
.+..+...+...|++++|.+.+++..+.. .+ ....++..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555666666666666666666654321 00 012334445555555555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=66.54 Aligned_cols=88 Identities=8% Similarity=-0.132 Sum_probs=68.0
Q ss_pred hcCCchHHHHHHHHhhhCCC-CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043284 90 RARAFDAVESLLTELKQNPE-IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLV 168 (527)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (527)
..|++++|+..|+++.+..+ .+.+..++..+..++...|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35788899999999887521 12255678888889999999999999999998876 56678888888999999999999
Q ss_pred HHHHHHhhhc
Q 043284 169 HLMFKNSRHK 178 (527)
Q Consensus 169 ~~~~~~~~~~ 178 (527)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.1e-06 Score=66.57 Aligned_cols=131 Identities=9% Similarity=-0.033 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGS--IPS----LLTYNTLIAGMCESAELTEAGRLWDDMVEKGV-EPN----VF 430 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~ 430 (527)
++..+...+...|++++|...+++..... .++ ...+..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34445555556666666666665541110 011 13566677777777777777777777654310 011 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDK----GCFP-NKTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
.+..+...+...|++++|.+.+++.++. +..+ ....+..++..+...|++++|.+.++++.+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777888888888888777642 1111 123466777778888888888888887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-06 Score=77.47 Aligned_cols=94 Identities=10% Similarity=-0.068 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHH---
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTR--- 507 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~--- 507 (527)
.|..+..++.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...|+++.+..+.+...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56677777777788888888887777643 22556677777778888888888888887777666555555544432
Q ss_pred HHhchhhhHHHHHHHHhh
Q 043284 508 IVSDLDSGAGALDELLVK 525 (527)
Q Consensus 508 ~~~~~~~a~~~~~~~l~~ 525 (527)
..+..+.+...++++++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 235666666677666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-06 Score=78.38 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+..++..+.+.|++++|+..|+++++..|. ... +...+++.++...+ ....|..+..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~----~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~ 239 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGD----DFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCH----HHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcc----chh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence 456677777889999999999988766542 111 11222233322211 11256777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHH-HHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKA-LCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 202 (527)
+.+.|++++|+..+++.++.. +.+..++..+..+|...|++++|...|++.... .+.+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 456777778888888888888888888877654 12234445545444 23445667
Q ss_pred HHHHHHHhcccC
Q 043284 203 GAIRVLDEMPSM 214 (527)
Q Consensus 203 ~A~~~~~~~~~~ 214 (527)
++...|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777777777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-05 Score=72.76 Aligned_cols=166 Identities=11% Similarity=0.013 Sum_probs=131.4
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGK----------IWEAKKLFDEFERGSIPSLLTYNTLIAGMCESA- 408 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 408 (527)
..++|++.++.+...++. +..+|+.-..++...|+ ++++...++.+....+.+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 346778888888877543 55566665666666666 889999999997778889999999999998888
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 043284 409 -ELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG-NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYES--------- 477 (527)
Q Consensus 409 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 477 (527)
+++++++.++++.+... -+..+|+.-..++.+.| .++++++.++++++... -+...|......+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 77999999999998742 36788888888888888 89999999999988653 3667788777776663
Q ss_pred -----CChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 478 -----GNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 478 -----g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
+.++++.+.++++....|.+...|..+...+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 5679999999999999999999998865533
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=62.68 Aligned_cols=107 Identities=10% Similarity=-0.046 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----
Q 043284 396 TYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN-------------VFTYNMLIQGFCKIGNAKEGIRILEEMLDK---- 458 (527)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 458 (527)
.+......+...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3455566666777777777777777754 233 237888888889999999999999998873
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 459 -GCFPNK-TSF----SLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 459 -~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
.+.|+. ..| ...+.++...|++++|+..|+++.+..|.|...+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 115765 467 8889999999999999999999988776555444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=74.46 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCC--------------CCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPE--------------IKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNV 145 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 145 (527)
.+..+...+.+.|++++|+..|+++.+..+ .+....+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 567778888889999999999988876200 11133456666666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 146 QRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
+.+..++..+..+|...|++++|+..|++.... .+.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666554 122344444455554444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.7e-06 Score=78.97 Aligned_cols=127 Identities=6% Similarity=-0.038 Sum_probs=81.5
Q ss_pred HHhcCChhHHHHHHHHhcccCC-----CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-----CCCCc-ChhhHHH
Q 043284 51 IFRQQNLDLALQIFHYAGKFHP-----NFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-----PEIKC-GENLFIT 119 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~ 119 (527)
+..+|++++|+.+++++++... ..+....+++.++..|...|++++|..+++++++. ++..| ....++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578888888888877764322 21223456778888888888888888888877654 23222 2345677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF-----NVQ-R-SVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
+...|...|++++|+.++++..+. |.. | ...+...+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887776542 311 1 122344455566666677777777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00016 Score=70.77 Aligned_cols=138 Identities=5% Similarity=-0.123 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCC-ChHHHHH
Q 043284 130 PELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK--RYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKD-DVEGAIR 206 (527)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~ 206 (527)
++++++.++.+.+.+ +.+..+|..-..++.+.| +++++++.++++.+. .+-+..+|+....++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 455555555555544 344555555555555555 445555555555554 2224445555444445555 5555666
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWR--------------GDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLT 272 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (527)
.++++.+..+ -|...|+.....+.+. +.++++++.+++++... +-+...|..+...+.+.++.+
T Consensus 166 ~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 166 FTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 6665555442 2455555554444432 34566777777766654 335666666665555555533
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=9.7e-05 Score=57.27 Aligned_cols=111 Identities=11% Similarity=-0.039 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 043284 375 KIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIR 450 (527)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 450 (527)
++++|...|++......++.. +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 456666666666333333332 5556666666677777777776653 45566666666665 677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043284 451 ILEEMLDKGCFPNKTSFSLLIEGLYE----SGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 495 (527)
+|++..+.| +...+..|...|.. .++.++|.++++++.+.+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777764 55666667777776 6777777777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-06 Score=61.91 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
.++..+...|++++|+..|+++++..|. +...+..++.++...|++++|++.++++.+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444433331 333444444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.8e-06 Score=61.86 Aligned_cols=99 Identities=6% Similarity=-0.044 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRS------VR 150 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~ 150 (527)
+...+..++..+...|++++|++.|+++.+..|. +...+..+..++...|++++|++.+++..+.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 4668889999999999999999999999986554 67889999999999999999999999999875 334 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 151 SLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
.+..+..++...|+++.|...++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 107 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELPEG 107 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhHHH
Confidence 7888888999999988888877766543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-05 Score=58.02 Aligned_cols=81 Identities=10% Similarity=-0.107 Sum_probs=65.0
Q ss_pred hHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHH
Q 043284 58 DLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTF 137 (527)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 137 (527)
+.|+..|+.+++..| .+...+..++..+...|++++|+..|+++.+..|. +...+..+..++...|++++|+..|
T Consensus 2 ~~a~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGT---DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 457788888877666 46778888888888899999999999888876443 5667888888888889999999888
Q ss_pred HHHHhc
Q 043284 138 LRIEKF 143 (527)
Q Consensus 138 ~~~~~~ 143 (527)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=61.72 Aligned_cols=96 Identities=13% Similarity=-0.036 Sum_probs=75.6
Q ss_pred HhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCch----------HHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFD----------AVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.+.+++++|++.++.+++.+|. +...|..+..++...++++ +|+..|+++.+..|. ...+|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--cHHHHHHHH
Confidence 4667899999999999988884 8889999999998887764 899999998887554 667788888
Q ss_pred HHHHhcC-----------ChhHHHHHHHHHHhcCCCCCHHHHHH
Q 043284 122 RNYGLAG-----------RPELAVKTFLRIEKFNVQRSVRSLNT 154 (527)
Q Consensus 122 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 154 (527)
.+|...| ++++|++.|++.++.+ |+...|..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~ 129 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 8887764 7888888888888763 55444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-05 Score=57.82 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=64.8
Q ss_pred hHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 95 DAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKN 174 (527)
Q Consensus 95 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (527)
+.|+..|+++.+..|. +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567778888776443 66788888888889999999999999888875 45677888888888889999999988888
Q ss_pred hhhc
Q 043284 175 SRHK 178 (527)
Q Consensus 175 ~~~~ 178 (527)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.2e-05 Score=71.00 Aligned_cols=125 Identities=8% Similarity=-0.067 Sum_probs=66.7
Q ss_pred HHhcCChhHHHHHHHHHHhc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc----CC-CCCC-hhhHHH
Q 043284 124 YGLAGRPELAVKTFLRIEKF-----NV-QR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHK----FK-VVPN-VFTCNI 190 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~-~~~~~~ 190 (527)
+..+|++++|+.++++.++. |. .| ...+++.+...|...|++++|..++++.... +| ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666555432 10 01 1345666666666666666666666654422 11 1222 345667
Q ss_pred HHHHHHcCCChHHHHHHHHhccc-----CCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPS-----MGM-VPN-LVTHTTILGGYVWRGDIENAKRVFGDILD 248 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (527)
|...|...|++++|+.++++..+ .|. .|+ ..+.+.+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766543 121 111 22334444555556666666666666544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=58.67 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
..+..++..+...|++++|+..|+++++.+|. +..+|..++.++...|++++|++.|+++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666666655553 344566666666666666666666665554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-07 Score=81.39 Aligned_cols=407 Identities=10% Similarity=0.078 Sum_probs=241.7
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
..|..|..|+.+..+.++..+|++.|-++ .|+..|..++....+.|.+++-+..+..+.+... ++.+=.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k---e~~IDt 120 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVET 120 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC---STTTTH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---ccccHH
Confidence 44567888999999999999999988665 2455888999999999999999999998877522 333445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC------------------
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFK------------------ 180 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------ 180 (527)
.++-+|++.++..+-.+.+ . .|+..-...+.+-|...|.++.|.-+|..+..-..
T Consensus 121 eLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999877654433 1 46666677888889999999999888877542111
Q ss_pred -CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 043284 181 -VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYT 259 (527)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (527)
-..++.+|..+-.+|...+.+.-|.-+--.++-. ......++..|-..|.+++-+.+++..+... ......|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 1235678888888888888777665544333321 1112234555667777777777777766432 33566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHccCCHHHHHHHHH-------------HHHHc
Q 043284 260 VLMDGYIKLGRLTDAVKVMDEMEDN-GVEP------NEVTYGVMIEAFCKGKKSGEARNLLD-------------DMLQR 319 (527)
Q Consensus 260 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~-------------~~~~~ 319 (527)
-|.-.|++- +.++..+.++..-.+ +++. ....|..++-.|.+-.++|.|....- ++...
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K 346 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 346 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH
Confidence 777777664 344444444332211 1111 23456667777777677665543211 11000
Q ss_pred CCCCCHHhH---------------HHHHHHHHhcCCHhHHHHHHHHHHh----------CCCCCCHhhHHHHHHHHHHcC
Q 043284 320 KYVPSSALC---------------CKVIDLLCEEGKVEDACELWKRLLR----------KNCMPDNAISSTIIHWLCKEG 374 (527)
Q Consensus 320 ~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~ 374 (527)
..+...| +.++.++...=|..++.+++.+.-. .....+..+-.++-..|....
T Consensus 347 --VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 347 --VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp --CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred --cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 1122233 3333343333444444444443211 011224445566667777777
Q ss_pred CHHHHHHHHHH------------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 043284 375 KIWEAKKLFDE------------FERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKI 442 (527)
Q Consensus 375 ~~~~a~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 442 (527)
+++.-+...+. +++ .+-...-..-+..|-++++|++++.+.++ ...|.-.|.....+
T Consensus 425 Dy~~LR~SId~ydNFD~i~LA~rLEk--HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S 493 (624)
T 3lvg_A 425 DYQALRTSIDAYDNFDNISLAQRLEK--HELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASES 493 (624)
T ss_dssp CCHHHHHTTSSCCCSCTTHHHHHHHT--CSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTC
T ss_pred hHHHHHHHHHHhccccHHHHHHHHhh--CchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHc
Confidence 76655443332 111 12222333444566677777777655422 11233334455677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043284 443 GNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKV 486 (527)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 486 (527)
|+.+-|.++++-.++.| +...|...+-.|...=+++-+.++
T Consensus 494 ~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 494 KDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 78888888888877754 455666666666666666665544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=52.02 Aligned_cols=79 Identities=9% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
..+..+...+...|++++|...|+++.+..|. +...+..+..++...|++++|+..+++..+.. +.+..++..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34444445555555555555555555443222 33444455555555555555555555554443 2334444444444
Q ss_pred HH
Q 043284 159 LV 160 (527)
Q Consensus 159 ~~ 160 (527)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00042 Score=53.58 Aligned_cols=8 Identities=0% Similarity=-0.072 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043284 167 LVHLMFKN 174 (527)
Q Consensus 167 ~a~~~~~~ 174 (527)
+|..+|++
T Consensus 13 ~A~~~~~~ 20 (138)
T 1klx_A 13 KAIQYYVK 20 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00013 Score=51.47 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++..+...|++++|+..|+++++..| .+..++..+...+...|++++|...|+++.+..|. +...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 344555566666666666666666655544 24555666666666666666666666665554332 3344444444
Q ss_pred HHH
Q 043284 123 NYG 125 (527)
Q Consensus 123 ~~~ 125 (527)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=57.39 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=64.4
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043284 89 ARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRP----------ELAVKTFLRIEKFNVQRSVRSLNTLLNA 158 (527)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (527)
.+.+.+++|++.+++..+..|. +...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 3456688888888888876554 667777777777777665 47888888877765 4566777777777
Q ss_pred HHhcC-----------CHHHHHHHHHHhhhcCCCCCChhhH
Q 043284 159 LVQNK-----------RYDLVHLMFKNSRHKFKVVPNVFTC 188 (527)
Q Consensus 159 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (527)
|...| ++++|++.|++.... .|+...|
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHY 127 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHH
Confidence 77664 566666666666653 4544444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00013 Score=52.86 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
.++.++..++..+...|++++|+..|+++.+..|. +...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666677777777777777777777776665443 445666666777777777777777766654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00072 Score=60.74 Aligned_cols=30 Identities=10% Similarity=-0.104 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHH
Q 043284 56 NLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKL 88 (527)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (527)
+..+|+.+|+++++.+|+ ...+|..+..++
T Consensus 214 ~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~ 243 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPE---FTYARAEKALVD 243 (372)
T ss_dssp HHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 347788888888887775 344555444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00034 Score=50.32 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhH
Q 043284 437 QGFCKIGNAKEGIRILEEMLDKGCFPNKT-SFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSW 501 (527)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 501 (527)
..+...|++++|+..|+++++.. +.+.. .+..++.++...|++++|.+.++++.+..+.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34445555555555555555432 11334 455555555555666666666665555554444333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00085 Score=47.44 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhcCC---hhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 40 QRLYPKRLVSMIFRQQN---LDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
++..+..++.++...++ .++|..+++++++.+|. ++.+...++..+...|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444455555543333 46666666666655552 5555666666666666666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00035 Score=65.47 Aligned_cols=89 Identities=7% Similarity=-0.006 Sum_probs=47.3
Q ss_pred cCChhHHHHHHHHhcccC-----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC-----CCCCcC-hhhHHHHHH
Q 043284 54 QQNLDLALQIFHYAGKFH-----PNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN-----PEIKCG-ENLFITVIR 122 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~ 122 (527)
.|++++|..++++++... +..+....+++.++..|...|++++|+.+++++++. ++..|+ ...++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666655321 211112345666666666666666666666665543 222222 234555666
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043284 123 NYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~ 142 (527)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0022 Score=57.68 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.+..+|..+...+...|++++|...+++++..+ |+...|..++..+.-.|++++|.+.++++....|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3455666666655666677777777777777754 66666666777777777777777777777776653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=47.33 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYD-TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
...+..+.+.|++++|+..|+.+++..| .+.. .+..++.++...|++++|++.|+++.+..|. +...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~---- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP---VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQAR---- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS---STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHH----
Confidence 3567788899999999999999988776 3677 8899999999999999999999999886554 3333311
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043284 124 YGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~ 142 (527)
+.+.++...|++...
T Consensus 75 ----~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMY 89 (99)
T ss_dssp ----HHHHHHHHHHCCTTH
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 445556666555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=61.48 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhC-----CCCCcC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQN-----PEIKCG-ENLFITVIRNYGLAGRPELAVKTFLRI 140 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 140 (527)
+++.++..|...|++++|+.+++++... ++..|+ ...++.+...|...|++++|+.++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444555555555554444432 111111 123344444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0069 Score=42.68 Aligned_cols=70 Identities=14% Similarity=0.028 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSV 496 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (527)
+.|...+..+..++...++ .++|..++++++... +-+......++..+.+.|++++|+..|+++.+..++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777776654444 678888888888753 224566777788888888888888888888777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0047 Score=44.76 Aligned_cols=74 Identities=8% Similarity=-0.046 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhH
Q 043284 428 NVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG------CFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSW 501 (527)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 501 (527)
+..-+..+...+...|++..|..+|+++++.- -.+....+..++.++.+.|++++|...++++.+..|.+....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566677777777777777777776421 123456677788888888888888888888877776655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.12 Score=44.52 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 043284 410 LTEAGRLWDDMVEKGVEPN---VFTYNMLIQGFCK-----IGNAKEGIRILEEMLDKGCFP--NKTSFSLLIEGLYES-G 478 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 478 (527)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|+++++. .| +..++..++..+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 56777888888876 666 5678888888888 49999999999999985 46 367777888888884 9
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043284 479 NEGEVGKVVSMATASGS 495 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~ 495 (527)
+.+++.+.++++....+
T Consensus 255 d~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 255 NRAGFDEALDRALAIDP 271 (301)
T ss_dssp CHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 99999999999988765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0042 Score=58.32 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=12.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhc
Q 043284 187 TCNILIKALCKKDDVEGAIRVLDEM 211 (527)
Q Consensus 187 ~~~~l~~~~~~~~~~~~A~~~~~~~ 211 (527)
+++.|...|...|++++|+.++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555555555555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0019 Score=60.48 Aligned_cols=86 Identities=9% Similarity=-0.091 Sum_probs=49.4
Q ss_pred cCCchHHHHHHHHhhhC-----CCCCc-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CCC-HHHHHHHHH
Q 043284 91 ARAFDAVESLLTELKQN-----PEIKC-GENLFITVIRNYGLAGRPELAVKTFLRIEKF-----NV-QRS-VRSLNTLLN 157 (527)
Q Consensus 91 ~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 157 (527)
.|++++|+.++++.++. .+..| ...+++.++.+|...|++++|+.++++.+.. |. .|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777766543 22211 2245666777777777777777777666532 21 111 234556666
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 043284 158 ALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~ 176 (527)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.028 Score=42.64 Aligned_cols=116 Identities=9% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHH----HHHHH-H--HHHccCCHHHHHHHHHHHHHC
Q 043284 392 PSLLTYNTLIAGMCESAEL------TEAGRLWDDMVEKGVEPNVFT----YNMLI-Q--GFCKIGNAKEGIRILEEMLDK 458 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~~----~~~l~-~--~~~~~g~~~~A~~~~~~~~~~ 458 (527)
.|..+|-..+...-+.|++ +..+++|++.... ++|+... |..+- . .+...+|.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666555666 6666777766664 4554211 11100 0 123347888888888888754
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 459 GCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 459 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
+-.- ...|...+..-.+.|+...|++++.++...++.+.......+..+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 2222 6667777777788888999999998888888877777777777554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.015 Score=44.72 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 392 PSLLTYNTLIAGMCESA---ELTEAGRLWDDMVEKGVEP--NVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
++..+...+..++++.+ +.++++.+|+...+.. .| +...+-.+.-++.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444445555555544 3335555555554432 12 123333344444555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.12 Score=40.85 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
..-.......|+++.|.++.+.+ .+...|..+.......|+++-|.++|.++.. +..+.-.|
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly 70 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLY 70 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHH
Confidence 34455567788888888887766 3667888888888888888888888887753 34455556
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHH
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGA 204 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 204 (527)
...|+.++-..+-+.....|- ++.....+...|+++++.++|.+.... |.. .......|..+.|
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~----~eA------~~~A~t~g~~~~a 134 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSL----PLA------YAVAKANGDEAAA 134 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCH----HHH------HHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCCh----HHH------HHHHHHcCcHHHH
Confidence 667777776666666555441 344455566678888888877655321 111 1112224666677
Q ss_pred HHHHHhc
Q 043284 205 IRVLDEM 211 (527)
Q Consensus 205 ~~~~~~~ 211 (527)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0084 Score=43.38 Aligned_cols=67 Identities=4% Similarity=-0.072 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCC-----CCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNP-----EIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+...+..++..+...|++..|..+|+.+.+.. +......++..+..++.+.|+++.|+..+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455556666666666666666666555431 11123445566666666666666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.051 Score=56.12 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=83.0
Q ss_pred HHhcCCchHHHH-HHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 88 LARARAFDAVES-LLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYD 166 (527)
Q Consensus 88 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (527)
....+++++|.+ ++..+. +......++..+.+.|..+.|+++.+.-. .-.......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 345667777655 432211 02223556666677777777776552111 1123445667777
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043284 167 LVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDI 246 (527)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (527)
+|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...|+.+...++.+..
T Consensus 670 ~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 670 LARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 777765443 2556777777777777777777777776543 233444455566666555554444
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 247 LDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
...| -++....+|.+.|++++|++++.+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 4433 122233344445555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=44.96 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 043284 410 LTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIG---NAKEGIRILEEMLDKGCFP--NKTSFSLLIEGLYESGNEGEVG 484 (527)
Q Consensus 410 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 484 (527)
...+.+-|.+..+.|. ++..+...+..++++++ +.++++.++++..+.+ .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666553 68888888999999988 6679999999999864 24 3456778889999999999999
Q ss_pred HHHHHHHhCCCCCh
Q 043284 485 KVVSMATASGSVES 498 (527)
Q Consensus 485 ~~~~~~~~~~~~~~ 498 (527)
++++.+.+..|.+.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999887544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.094 Score=54.13 Aligned_cols=46 Identities=11% Similarity=-0.066 Sum_probs=26.6
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043284 335 LCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEF 386 (527)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (527)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666554321 24556666666666666666666666655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.13 Score=38.09 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKG 424 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (527)
.+..+...|.-++..+++..+....+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444444433344444444444444444444444444444444444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.16 Score=37.67 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+.-.|..++..++..+... +.+..-++.++.-....-+-+-..+.++.+-+.+++. ..|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 4456888888888888877 3566667777777777777777777777776654432 3455555
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
....+-.+-. +.......+.....+|.-++-.+++..++.. .+|++.....+..+|.+.|+..++.+++.++-+
T Consensus 80 Vi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 5555554432 4455666677777788888888888776543 366777777788888888888888888888877
Q ss_pred CCCC
Q 043284 284 NGVE 287 (527)
Q Consensus 284 ~~~~ 287 (527)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.31 Score=38.50 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043284 332 IDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELT 411 (527)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (527)
.....+.|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+... +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHH
Confidence 34556778888888877665 2567788888888888888888888887642 345555666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 412 EAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMA 490 (527)
Q Consensus 412 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (527)
...++-+.....| -++.....+...|++++++++|.+.-. .|.... .....|..+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 6666655555443 144555566777888888888755322 111111 122246677777776664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.52 Score=40.66 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 043284 236 IENAKRVFGDILDRGWVPD---ATTYTVLMDGYIKL-----GRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKG-KKS 306 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 306 (527)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35566666666665 333 45677777777773 77788888887777764322366666677777664 777
Q ss_pred HHHHHHHHHHHHcCCC
Q 043284 307 GEARNLLDDMLQRKYV 322 (527)
Q Consensus 307 ~~a~~~~~~~~~~~~~ 322 (527)
+.+.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.98 E-value=1.7 Score=44.49 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSR 176 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (527)
|..++.++.+.++.+.+.++|+.+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556666666667777776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.80 E-value=5.7e-06 Score=75.54 Aligned_cols=223 Identities=11% Similarity=0.040 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
+..|..++.+..+.++..+|++.|- .. . |+..|..++.+..+.|++++-+..+.-..+.. .++.+=+.++-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA--~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KA--D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CC--S---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hC--C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3455555555555555555443321 11 1 33345555555555555555555554444332 22223334555
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 158 ALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
+|++.+++.+..+++ ..||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++.
T Consensus 125 ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 555555544433222 124444444555555555555555554443332 222333344455555
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDML 317 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (527)
.|.+.- .+. .++.||..+-.+|...+.+.-|.-.--.+.-. ......++..|-..|-+++.+.+++.-+
T Consensus 188 ~AVdaA---rKA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGA---RKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTT---TTC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHH---Hhc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 444321 111 25566766666777776666554443333211 1112234455666677777777666655
Q ss_pred HcCCCCCHHhHHHHHHHHHhc
Q 043284 318 QRKYVPSSALCCKVIDLLCEE 338 (527)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~ 338 (527)
.. -......|+.+.-.|++-
T Consensus 257 gl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS
T ss_pred CC-CchhHHHHHHHHHHHHhc
Confidence 32 223455666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.073 Score=39.33 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 043284 411 TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKE---GIRILEEMLDKGCFP--NKTSFSLLIEGLYESGNEGEVGK 485 (527)
Q Consensus 411 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 485 (527)
..+.+-|......|. ++..+-..+.+++.++.+... ++.++++..+.+ .| .......|+-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444433332 455555556666666665444 666666665542 12 22334456666677777777777
Q ss_pred HHHHHHhCCCCC
Q 043284 486 VVSMATASGSVE 497 (527)
Q Consensus 486 ~~~~~~~~~~~~ 497 (527)
+++.+.+..|.+
T Consensus 96 ~~~~lL~~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 777766665533
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.19 Score=38.22 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 043284 304 KKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCM 357 (527)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (527)
++.++|.++|+.+....-.. ...+....+.-.+.|+...|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55555555555554432221 334444444445556666666666655555433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.18 Score=37.29 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHH
Q 043284 374 GKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTE---AGRLWDDMVEKGVEP--NVFTYNMLIQGFCKIGNAKEG 448 (527)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 448 (527)
.....+.+-|........++..+-..++.++++.++... ++.+++.+...+ .| .....-.+.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555555433334667777777777777766555 777777777652 23 234445566677888888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 043284 449 IRILEEMLDKGCFPNK 464 (527)
Q Consensus 449 ~~~~~~~~~~~~~p~~ 464 (527)
.+.++.+++. .|+.
T Consensus 94 ~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHh--CCCC
Confidence 8888888873 4643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=1.9 Score=40.54 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHH
Q 043284 224 TTILGGYVWRGDIENAKRVFGDILDR--GWVPD---ATTYTVLMDGYIKLGRLTDAVKVMDEMED----NGVEPN--EVT 292 (527)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 292 (527)
..|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44555666666666666666665432 11111 23444455666666666666666665431 111111 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 293 YGVMIEAFCKGKKSGEARNLLDDMLQ 318 (527)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (527)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34445555566666666666655543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=95.30 E-value=0.38 Score=33.45 Aligned_cols=69 Identities=6% Similarity=0.127 Sum_probs=55.2
Q ss_pred ccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 441 KIG-NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 441 ~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
+.. |.-+..+-++.+...++.|++.+..+.+++|.|.+++.-|.++++-+..+..+...+|..++..+.
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 344 566777788888888888999999999999999999999999999887777666667888887543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.76 Score=49.26 Aligned_cols=169 Identities=9% Similarity=0.030 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
...++..+...+.++.|.++..+. +.++..-..++.++...|++++|.++|+++... ...+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~--~~~~~~l~------ 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV--LYSHTSQF------ 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS--CTTCCCSC------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hcccchhh------
Confidence 445566666677777777766655 124444556667777777777777777766432 11110000
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-C--hhhHHHHHHHHHcC
Q 043284 124 YGLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVP-N--VFTCNILIKALCKK 198 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~ 198 (527)
..... +..+.... ...-..-|..++..+.+.|.++.+.++-+......+..+ + ...|..+.+.+...
T Consensus 880 ----~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 ----AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp ----SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 11111110 012234577788888888888888877766655422111 1 22577888899999
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 043284 199 DDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIE 237 (527)
Q Consensus 199 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 237 (527)
|++++|...+-.+..... -......++...+..|..+
T Consensus 952 ~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 952 GKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 999999999887765432 3456666666666655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=3.1 Score=39.02 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=34.4
Q ss_pred cCChhHHHHHHHHhcc---cCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhC
Q 043284 54 QQNLDLALQIFHYAGK---FHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQN 107 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (527)
.|++++|++.+-.+.+ ...+..........++..|...|+|+...+.+..+.+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3667777766543322 22334445667777888888888888777777666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.74 Score=42.40 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=69.3
Q ss_pred hcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHH-HHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChh
Q 043284 53 RQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAV-ESLLTELKQNPEIKCGENLFITVIRNYGLAGRPE 131 (527)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 131 (527)
..|+.+.|...++.++..-.|....... ...|-.. ...+++.. ..+...++..+...|+++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~----------~~~w~~~~r~~l~~~~--------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLR----------DFQFVEPFATALVEDK--------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGT----------TSTTHHHHHHHHHHHH--------HHHHHHHHHHHHHTTCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCC----------chhHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCHH
Confidence 4589999999999987765442211000 0111111 11122111 113345566666777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----cCCCCCChhhHH
Q 043284 132 LAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH----KFKVVPNVFTCN 189 (527)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 189 (527)
+++..+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.. ..|+.|...+-.
T Consensus 189 ~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 189 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7777777776654 56667777777777777777777777776543 346777665433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.8 Score=33.81 Aligned_cols=66 Identities=5% Similarity=0.129 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 444 NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
|.-+..+-++.+...++.|++.+....+++|.|.+++.-|.++++-+..+..+...+|..++..+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 133 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHh
Confidence 455677777888888888999999999999999999999999999988777777777888887543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.90 E-value=6.6 Score=40.33 Aligned_cols=266 Identities=13% Similarity=0.069 Sum_probs=147.9
Q ss_pred HHHHcCCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCCHHhHHHHHH
Q 043284 193 KALCKKDDVEGAIRVLDEMPSMGMVPNLV--THTTILGGYVWRGDIENAKRVFGDILDRGW-------VPDATTYTVLMD 263 (527)
Q Consensus 193 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 263 (527)
-+.+..|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34667888899999998876532112322 223333445566666677877777665321 011112223333
Q ss_pred HHHhcCC-hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHHhc
Q 043284 264 GYIKLGR-LTDAVKVMDEMEDNGVEPNE--VTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVI--DLLCEE 338 (527)
Q Consensus 264 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 338 (527)
+.+-.|. -+++.+.+..+.... .+.. ..-..+...+...|+.+....++..+.+.. +..+...+. -++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333342 346666666665532 1111 112233444567788888888888776532 233333333 334467
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAIS--STIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRL 416 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (527)
|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+......++.....+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 88888888888877642 2222222 23445677888988888888888655444555444455555666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHH
Q 043284 417 WDDMVEKGVEPNVFTYNMLIQGFCKIGNA-KEGIRILEEMLDKGCFPNKTSF 467 (527)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~ 467 (527)
++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 77666542 34333333333344444443 678888888875 3555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.74 Score=35.74 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC-------HHHHHHHHHHHHhcCCchHHHHHHHHhh
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN-------YDTYHSIIHKLARARAFDAVESLLTELK 105 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (527)
-.+..-+..+...|.++.|+-+.+.++..... .++ ..++..++.++...|+|.+|...|++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34455555555555555555555554322110 111 1133444444455555555555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.48 Score=36.77 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-------hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-------ENLFITVIRNYGLAGRPELAVKTFLRIEKFN----- 144 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 144 (527)
+..++..-+..+...|.++.|+-+...+.......++ ..++..+..++...|++..|...|++.++..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3446777788889999999999888876654222222 1256677889999999999999999863321
Q ss_pred -------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 145 -------------------VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 145 -------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
...+.+.-..+..+|.+.+++++|+.+++.+..+
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1112245566889999999999999999998765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.49 E-value=1.2 Score=33.14 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGNA---KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
.|+..+--.+.+++.++.+. .+++.++++..+.+..-....+..|+-++.+.|++++|.++.+.+.+..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 45666666677777776654 4577777777765411124556677778888888888888888887776544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.52 E-value=2.6 Score=31.74 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043284 426 EPNVFTYNMLIQGFCKIGNA---KEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVE 497 (527)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 497 (527)
.|+..+-..+.+++.++.+. .+++.++++....+..-.......|+-++.+.|++++|+++.+.+.+..|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45555555566666665543 3466666666653311123344556666777777777777777776666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.49 E-value=5.2 Score=35.13 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHH----HHHHHHhcCCCCCHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVK----TFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~l~ 156 (527)
|..+..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-..+.+++++......++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445566777888888777654322 2334455444443 344445556677777777777
Q ss_pred HHHHhcCCH-----HHHHHHHHHhhhcCC-CCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 043284 157 NALVQNKRY-----DLVHLMFKNSRHKFK-VVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGY 230 (527)
Q Consensus 157 ~~~~~~g~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (527)
..+.....- +-..+.+....+..+ ..-++.....+...|.+.|++.+|...|-.-.. -|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~----~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH----DSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH----HHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----ccHHHHHHHHHHH
Confidence 666553311 111122222221111 123566777788888888888888887752211 1344555555444
Q ss_pred Hhc---CChHHHHH
Q 043284 231 VWR---GDIENAKR 241 (527)
Q Consensus 231 ~~~---~~~~~a~~ 241 (527)
... |...++--
T Consensus 176 ~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 176 LCQVDDIEDSTVAE 189 (312)
T ss_dssp HHHTTCCCHHHHHH
T ss_pred HHhcCCCCcchHHH
Confidence 444 55554433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.71 Score=46.18 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 462 PNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
-+..-|..|+....|.+++++|.+.|+..... .-++..|..|+..+.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~-RFs~ka~~kLLeiY~ 657 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA-RFDPVSCQQLLKIYL 657 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 34455777888888888888888888887654 356667777777443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.78 E-value=1.9 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=41.2
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
|.-+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++....+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344566666777777777777777777777777777777777777774433334445555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.84 Score=42.03 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEML-----DKGCFPNKTS 466 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 466 (527)
++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++. +.|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444444455555554444444331 2234444455555555555555555544443 2355554444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.49 E-value=1 Score=45.12 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=21.9
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 372 KEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDD 419 (527)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 419 (527)
..|+++-|+.+-++.....|.+..+|..|+.+|...|+++.|+-.+..
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 344444444444444333334444444444444444444444444433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.33 E-value=1.1 Score=42.03 Aligned_cols=102 Identities=9% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhC-CCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCHHH--H
Q 043284 79 DTYHSIIHKLARARAFDAVESLLTELKQN-PEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKF---NVQRSVRS--L 152 (527)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 152 (527)
.++..++..+.+.|+++.|.+.|.++... .+...-...+...++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36788888999999999999999988764 222334567888899999999999999998887543 22233221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 043284 153 NTLLNALVQNKRYDLVHLMFKNSRHKFK 180 (527)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (527)
..-+..+...+++..|...|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1222334457889998888877766544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.61 E-value=21 Score=38.35 Aligned_cols=145 Identities=9% Similarity=-0.001 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCC------------
Q 043284 152 LNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPN------------ 219 (527)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~------------ 219 (527)
...++..+...+..+-+.++..... .+...--.+..++...|++++|.++|.+... |+..+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 3345666777777777766554332 2334444566777788888888888876532 11111
Q ss_pred -----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 220 -----------LVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDA----TTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 220 -----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
..-|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 122444555555555555555555544433211111 13455555555556666665555555443
Q ss_pred CCCCCHHHHHHHHHHHHccCC
Q 043284 285 GVEPNEVTYGVMIEAFCKGKK 305 (527)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~ 305 (527)
. .-......++...+..|.
T Consensus 968 ~--~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 968 P--LKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp S--SCHHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHHHHhCCC
Confidence 2 123344444444444433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.31 E-value=8.9 Score=33.66 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043284 358 PDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCES---AELTEAGRLWDDMVEKGVEPNVFTYNM 434 (527)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~ 434 (527)
-++.....+...|.+.|++.+|+..|-.. ...+...+..++.-+... |...++--++-+ .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------a 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------L 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------H
Confidence 47777888888888889888888777521 112345555555544443 433332111111 1
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 043284 435 LIQGFCKIGNAKEGIRILEEML 456 (527)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~ 456 (527)
++ .|.-.|+...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 12 2445678888888777664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.80 E-value=3.9 Score=30.27 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
|.-+..+-++.+...+..|++.+....+++|-+.+++..|.++|+-++....+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344566666777777777788888888888888888888888888775444444555665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.72 E-value=12 Score=33.07 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 043284 222 THTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKV----MDEMEDNGVEPNEVTYGVMI 297 (527)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 297 (527)
+|.++..-|.+.+++++|++++-.-. ..+.+.|+...+-++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445556777777777777654322 123344544444333 34445556677776666666
Q ss_pred HHHHccCCHH-HHHHHHHHHHH----cC--CCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 043284 298 EAFCKGKKSG-EARNLLDDMLQ----RK--YVPSSALCCKVIDLLCEEGKVEDACELW 348 (527)
Q Consensus 298 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (527)
..+......+ .-..+++.+.+ .| ..-++.....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665443311 11222222221 11 2334555555666666666666665554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.32 E-value=15 Score=33.57 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHH--
Q 043284 225 TILGGYVWRGDIENAKRVFGDILDRGWVPD-----ATTYTVLMDGYIKLGRLTDAVKVMDEMEDN--GVEPNEVTYGV-- 295 (527)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 295 (527)
.++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+.+.... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777788888888777777765311111 233445556777778888888777766532 12223222211
Q ss_pred --HHHHHH-ccCCHHHHHHHHHHHH
Q 043284 296 --MIEAFC-KGKKSGEARNLLDDML 317 (527)
Q Consensus 296 --l~~~~~-~~~~~~~a~~~~~~~~ 317 (527)
-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122345 6778887777666553
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.84 E-value=7.1 Score=36.39 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHH--
Q 043284 114 ENLFITVIRNYGLAGRPELAVKTFLRIEKFN--VQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCN-- 189 (527)
Q Consensus 114 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 189 (527)
......++..|.+.|+++.|.+.+.++...- ...-...+..+++.+...+++..+...+++........++....+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3467789999999999999999999998752 233467788899999999999999999998765433333332222
Q ss_pred --HHHHHHHcCCChHHHHHHHHhccc
Q 043284 190 --ILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 190 --~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
.-+..+...+++..|...|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 122334567899999888877654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.75 E-value=6.9 Score=29.05 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=9.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFE 387 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~ 387 (527)
+.-++.+.|++++|.+..+.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.44 E-value=17 Score=33.21 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhh
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQ 106 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (527)
+...++..|.+.|+.++..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777777777777666543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.21 E-value=1.2 Score=37.75 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=74.2
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC-CcChhhHHHHHHHHHhc
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEI-KCGENLFITVIRNYGLA 127 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 127 (527)
..+.+.|++++|++....-++.+| .|...-..+++.++-.|+|++|.+-++.+.+..|. .+....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P---~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP---KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----
Confidence 456788999999999998888887 58888888999999999999999999988876332 1122233333332
Q ss_pred CChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhhc
Q 043284 128 GRPELAVKTFLRIEKFNV-----QRSVRSLNTLLNALV--QNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 128 g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 178 (527)
...=.++..-+- .....-...++.++. ..|+.++|..+-....+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222222111 112223344444444 358888888777776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.95 E-value=16 Score=32.37 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHH----HHHHhcCCCCCHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTF----LRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~ 156 (527)
|..+..-|.+.+++++|++++..-. ..+.+.|+...|-++. +-+.+.+++++......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555677788888777655332 2233344444433332 4444456666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHH----hhhcC-CCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 043284 157 NALVQNKRYD-LVHLMFKN----SRHKF-KVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGY 230 (527)
Q Consensus 157 ~~~~~~g~~~-~a~~~~~~----~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 230 (527)
..+.....-+ .=..+++. -.+.. ...-++.....+...|.+.+++.+|...|- . |-.++...+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665554311 11112222 11110 122356667777888888888888888773 2 2223345665555555
Q ss_pred HhcCChHHH
Q 043284 231 VWRGDIENA 239 (527)
Q Consensus 231 ~~~~~~~~a 239 (527)
...+...++
T Consensus 178 ~~~~~~~e~ 186 (336)
T 3lpz_A 178 YKQDESHTA 186 (336)
T ss_dssp HHTSCGGGH
T ss_pred HHhcCCccH
Confidence 554444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.40 E-value=8.9 Score=28.90 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 043284 391 IPSLLTYNTLIAGMCESAEL---TEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK 464 (527)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 464 (527)
.++..+--.+..++++..+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 46666666677777776543 35677777777653222344455566677888888888888888887 34654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.94 E-value=34 Score=33.54 Aligned_cols=116 Identities=11% Similarity=-0.010 Sum_probs=70.2
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043284 339 GKVEDACELWKRLLRKNCMPDNAISSTIIHW----LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAG 414 (527)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 414 (527)
.+.+.|...+....+.. ..+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCHHHHH
Confidence 37788988888876543 2233333222222 223343455666666653222 33333444444555779999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 415 RLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..|+.|..... ......-.+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988865311 2333345566777888999999999998875
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.53 E-value=9.1 Score=26.61 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+... .||...|..| +-.+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 345555555555554422 11111222334566677777766655432 4666555444 345667666666666
Q ss_pred HHHHhCCCCC
Q 043284 488 SMATASGSVE 497 (527)
Q Consensus 488 ~~~~~~~~~~ 497 (527)
..+-.++.|.
T Consensus 93 ~~la~sg~p~ 102 (116)
T 2p58_C 93 NRLARSQDPR 102 (116)
T ss_dssp HHHTTCCCHH
T ss_pred HHHHhCCCHH
Confidence 5555555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.38 E-value=8 Score=32.87 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043284 370 LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEK 423 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (527)
..+.|++++++.....-.+..|.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345566666666666655555666666666666666666666666666665544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.61 E-value=8.8 Score=26.63 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043284 408 AELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVV 487 (527)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (527)
...++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+... .||...|..| +-.+.|-.+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHH
Confidence 345555555555554422 11111222334566677777766554432 4666555444 345667777776666
Q ss_pred HHHHhCCCCC
Q 043284 488 SMATASGSVE 497 (527)
Q Consensus 488 ~~~~~~~~~~ 497 (527)
..+-.++.|.
T Consensus 92 ~~la~sg~p~ 101 (115)
T 2uwj_G 92 AGLGGSSDPA 101 (115)
T ss_dssp HHHHTCSSHH
T ss_pred HHHHhCCCHH
Confidence 5555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 527 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 44/337 (13%), Positives = 90/337 (26%), Gaps = 19/337 (5%)
Query: 52 FRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFD-AVESLLTELKQNPEI 110
++ + + A + + P+ N + + R D + +KQNP
Sbjct: 10 YQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL- 65
Query: 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHL 170
N G + + R L
Sbjct: 66 ------LAEAYSNLGNVYKER-GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 171 MFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILG-G 229
+ C K + ++ PN + LG
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 230 YVWRGDIENAKRVFGDILDRGWVPD-ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP 288
+ +G+I A F + P+ Y L + + AV
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 289 NEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELW 348
+G + + + A + ++ + A C L E+G V +A + +
Sbjct: 237 AV-VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN-ALKEKGSVAEAEDCY 294
Query: 349 KRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDE 385
LR + + + + ++G I EA +L+ +
Sbjct: 295 NTALRLCPTHAD-SLNNLANIKREQGNIEEAVRLYRK 330
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.38 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.94 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.85 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.52 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.29 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.26 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.21 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.88 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.84 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.7 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 95.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.95 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.77 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-24 Score=200.14 Aligned_cols=382 Identities=14% Similarity=0.065 Sum_probs=232.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
++..+.+.|++++|++.|+++++.+| .++.++..++.++...|++++|+..|+++.+..|. +..++..++.++..
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhhh
Confidence 56777888888888888888887776 36778888888888888888888888888776443 56677788888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043284 127 AGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIR 206 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 206 (527)
.|++++|++.+....+.. +.+..............+....+.......... ..................+....+..
T Consensus 80 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hccccccccccccccccc-ccccccccccccccccccccccccccccccccc--ccccccccccccccccccchhhhhHH
Confidence 888888888888887765 344444555555555555555555444444333 12233334444444555555555555
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043284 207 VLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGV 286 (527)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 286 (527)
.+....... +-+...+..+...+...|++++|...++..++.. +.+...+..+..++...|++++|+..+++....+
T Consensus 157 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 233 (388)
T d1w3ba_ 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence 555544432 1234445555555555555555555555555442 2234444555555555555555555555444432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043284 287 EPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTI 366 (527)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (527)
.. +...+..+..++.+.|++++|...++++.+..+ .+..++..+
T Consensus 234 ----------------------------------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 277 (388)
T d1w3ba_ 234 ----------------------------------PN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNL 277 (388)
T ss_dssp ----------------------------------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHH
T ss_pred ----------------------------------hh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 21 333344444555555555555555555555432 244555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEP-NVFTYNMLIQGFCKIGNA 445 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 445 (527)
...+...|++++|...++......+.+...+..+...+...|++++|+..|++..+. .| +..++..+..++...|++
T Consensus 278 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 666666666666666666665555566666666777777777777777777776654 33 355666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 043284 446 KEGIRILEEMLDKGCFPN-KTSFSLLIEGLYESGN 479 (527)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 479 (527)
++|+..|+++++. .|+ ...+..++.+|.+.|+
T Consensus 356 ~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 356 QEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7777777777663 343 4566677777766664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.9e-23 Score=195.49 Aligned_cols=376 Identities=15% Similarity=0.067 Sum_probs=262.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCCh
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDV 201 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (527)
..+.+.|++++|++.++++.+.. |.+..++..+..++.+.|++++|...|++..+. .+.+..+|..+..+|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhccc
Confidence 33444555555555555554443 233445555555555555555555555555443 122344555555555555555
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 043284 202 EGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEM 281 (527)
Q Consensus 202 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 281 (527)
++|++.+....+... .+..............+....+........... .................+....+...+.+.
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 555555555544331 233333333334444444444444444444332 223344444555556666777777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHh
Q 043284 282 EDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNA 361 (527)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (527)
.... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...++.....+ +.+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 6543 224566777777788888888888888887775432 56677788888999999999999999988875 34677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 043284 362 ISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK 441 (527)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 441 (527)
.+..+...+.+.|++++|...|+++....+.+..++..++..+...|++++|.+.++..... .+.+...+..+...+..
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHH
Confidence 78888999999999999999999997777888999999999999999999999999998876 35567888899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 442 IGNAKEGIRILEEMLDKGCFP-NKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
.|++++|++.|+++++. .| +..++..++.+|.+.|++++|.+.++++.+..|.+...|..+...+
T Consensus 318 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999885 35 4667889999999999999999999999999988888887776643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.4e-16 Score=139.08 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=147.8
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+.......+..+.+.|++++|+..|+.+++.+|. +..+|..++.++...|++++|...|+++.+..|. +...+..
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 92 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPD--NQTALMA 92 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc--ccccccc
Confidence 3334457888999999999999999999988874 7889999999999999999999999999886554 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH---------------HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSL---------------NTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN 184 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (527)
++.++...|++++|.+.+++...... .....+ ...+..+...+.+.++...|.+.........+
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~ 171 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 171 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred ccccccccccccccccchhhHHHhcc-chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999887541 111111 01111222333444555555544433222223
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043284 185 VFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDG 264 (527)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (527)
...+..+...+...|++++|+..|++...... -+...|..+..++...|++++|.+.|+++++.. +-+...+..+..+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHH
Confidence 34444555555555555555555555444321 134445555555555555555555555555432 1234445555555
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 043284 265 YIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 265 ~~~~g~~~~a~~~~~~~~~ 283 (527)
|.+.|++++|+..|++..+
T Consensus 250 ~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.1e-14 Score=127.73 Aligned_cols=244 Identities=12% Similarity=0.035 Sum_probs=146.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 043284 190 ILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLG 269 (527)
Q Consensus 190 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (527)
.....+.+.|++++|+..|+++.+... -+..+|..+..++...|++++|...+.+.++.. +-+...+..++.++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 345556666666666666666665532 245566666666666666666666666666553 224556666666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 043284 270 RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
++++|.+.++++.... |+............. ..+.......+..+...+.+.++...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 6666666666665542 221110000000000 0000000111222334455666777777
Q ss_pred HHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043284 350 RLLRKNC-MPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPN 428 (527)
Q Consensus 350 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 428 (527)
++....+ ..+..++..+...+...|++++|...|++.....+.+...|..++.+|...|++++|.+.|++..+.. +-+
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 6665432 23456666777777888888888888888755556677778888888888888888888888877652 224
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 429 VFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
..+|..+..+|.+.|++++|++.|+++++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56677788888888888888888888775
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.9e-11 Score=105.48 Aligned_cols=213 Identities=12% Similarity=0.060 Sum_probs=161.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR-AFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
+..++.++.+.+.+++|++.++.+++.+|. +..+|+..+.++...| ++++|+..++++.+..|. +..+|..+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~--~~~a~~~~~~ 120 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh--hhhHHHHHhH
Confidence 356777888999999999999999999884 7889999999988876 589999999999886554 7788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC--
Q 043284 123 NYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD-- 200 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 200 (527)
.+...|++++|++.++++.+.. +.+..+|..+...+...|++++|+..++++.+. .+.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 9999999999999999999876 677899999999999999999999999999876 23356678777766665554
Q ss_pred ----hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHH
Q 043284 201 ----VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVP-DATTYTVLMDGYI 266 (527)
Q Consensus 201 ----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 266 (527)
+++|++.+.+..+... .+...|..+...+. ....+++.+.++...+....+ +...+..++..|.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5677777777766542 25666666655543 334566677776666543221 3334444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.6e-10 Score=102.64 Aligned_cols=216 Identities=6% Similarity=-0.049 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 043284 78 YDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAG-RPELAVKTFLRIEKFNVQRSVRSLNTLL 156 (527)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 156 (527)
..++..+...+.+.+.+++|+++++++.+..|. +..+|.....++...| ++++|++.+++..+.. +.+..+|..+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 456777777888999999999999999997555 7778888888888876 4899999999998876 67789999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-
Q 043284 157 NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD- 235 (527)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 235 (527)
.++.+.|++++|+..++++... .+.+...|..+...+...|++++|++.++++++.+. .+...|+.+..++.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHcccc
Confidence 9999999999999999999876 344688999999999999999999999999998753 367788887777766655
Q ss_pred -----hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 043284 236 -----IENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEP-NEVTYGVMIEAFC 301 (527)
Q Consensus 236 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 301 (527)
+++|++.+..+++.. +.+...|..+...+.. ...+++.+.++...+....+ +...+..++..|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888888775 3467777777665544 44677788887776653322 3444555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=7.5e-10 Score=100.59 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=43.4
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHhHHHH
Q 043284 191 LIKALCKKDDVEGAIRVLDEMPSMGMVPN----LVTHTTILGGYVWRGDIENAKRVFGDILDRGWV-PD----ATTYTVL 261 (527)
Q Consensus 191 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 261 (527)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|+..+++..+.... ++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34445556666666666665554321111 123444555555666666666666555432100 01 1223334
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 043284 262 MDGYIKLGRLTDAVKVMDEM 281 (527)
Q Consensus 262 ~~~~~~~g~~~~a~~~~~~~ 281 (527)
...+...|++..+...+.+.
T Consensus 98 ~~~~~~~~~~~~a~~~~~~a 117 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKA 117 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.1e-09 Score=99.53 Aligned_cols=275 Identities=10% Similarity=0.012 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHhcccCCC-CCC----HHH
Q 043284 151 SLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN---VFTCNILIKALCKKDDVEGAIRVLDEMPSMGM-VPN----LVT 222 (527)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~ 222 (527)
........+...|++++|+.++++........+. ...+..+..++...|++++|+..|++..+... .++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3444456667788888888888877654211111 23566677777788888888888877654210 011 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHH
Q 043284 223 HTTILGGYVWRGDIENAKRVFGDILDR----GWVP---DATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVE----PNEV 291 (527)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~ 291 (527)
+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 555666777778888888777766532 1111 1123344555666666666666666655543211 1122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHhhHHHHHHH
Q 043284 292 TYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWKRLLRKNCMP--DNAISSTIIHW 369 (527)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 369 (527)
.+......+...++...+...+........ ..+..+ ....+......
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLG-------------------------------NGKYHSDWISNANKVRVIY 222 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-------------------------------TSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------------------------HhcccCchHHHHHHHHHHH
Confidence 223333334444444444444433322100 000000 01122233344
Q ss_pred HHHcCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHH
Q 043284 370 LCKEGKIWEAKKLFDEFERGSI----PSLLTYNTLIAGMCESAELTEAGRLWDDMVE----KGVEPN-VFTYNMLIQGFC 440 (527)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~ 440 (527)
+...|+++.|...++......+ .....+..++.++...|++++|...++++.. .+..|+ ..++..+...|.
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 4455555555555555422111 1123344455556666666666666655542 122222 234555556666
Q ss_pred ccCCHHHHHHHHHHHH
Q 043284 441 KIGNAKEGIRILEEML 456 (527)
Q Consensus 441 ~~g~~~~A~~~~~~~~ 456 (527)
..|++++|.+.+++++
T Consensus 303 ~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2e-11 Score=105.87 Aligned_cols=96 Identities=16% Similarity=0.034 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHH
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIR 122 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (527)
.+..++.+|.+.|++++|+..|+++++.+|+ ++.+|..++.++...|++++|++.|+++.+..|. +..++..+..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~ 113 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh--hhhhHHHHHH
Confidence 3444555555555555555555555555542 4445555555555555555555555555554332 3344555555
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 043284 123 NYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~ 143 (527)
++...|++++|++.|++..+.
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhh
Confidence 555555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=8.9e-10 Score=97.68 Aligned_cols=223 Identities=12% Similarity=0.053 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043284 271 LTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKK--------------SGEARNLLDDMLQRKYVPSSALCCKVIDLLC 336 (527)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (527)
.+.+..+|+++...- +.+...|...+..+...++ .++|..+|++..+...+.+...+...+....
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455677787777642 3355666666555543322 3556666666665433334555556666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHH
Q 043284 337 EEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGM-CESAELTEAGR 415 (527)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~ 415 (527)
..|+++.|..+++.+.+..+.....++...+..+.+.|+.+.|..+|+++....+.+...|...+... ...|+.+.|..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 77777777777777766543333445666666666777777777777776555555555555444432 23466777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 416 LWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKG-CFPN--KTSFSLLIEGLYESGNEGEVGKVVSMATA 492 (527)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (527)
+|+.+.+. .+.+...|...+..+...|+.+.|..+|++++... ..|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 191 i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776664 23345666666666677777777777777766542 2222 23566666655666777777777776665
Q ss_pred CCC
Q 043284 493 SGS 495 (527)
Q Consensus 493 ~~~ 495 (527)
..+
T Consensus 270 ~~~ 272 (308)
T d2onda1 270 AFR 272 (308)
T ss_dssp HTT
T ss_pred HCc
Confidence 544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=9.8e-10 Score=97.43 Aligned_cols=187 Identities=9% Similarity=0.052 Sum_probs=143.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 043284 270 RLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQRKYVPSSALCCKVIDLLCEEGKVEDACELWK 349 (527)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (527)
..++|..+|++..+...+.+...|...+..+...|+++.|..+|+.+++.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888876544456677788888888889999999999998876544445567788888888899999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 043284 350 RLLRKNCMPDNAISSTIIHW-LCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKG-VEP 427 (527)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p 427 (527)
++.+.++. +...+...+.. +...|+.+.|..+|+.+....+.+...|...+..+...|+++.|..+|++..... ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 98877543 33444443333 3345889999999999966677788899999999999999999999999988753 333
Q ss_pred C--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043284 428 N--VFTYNMLIQGFCKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 428 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (527)
+ ...|...+..-...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 34677778777788999999999998875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=3.2e-11 Score=108.81 Aligned_cols=251 Identities=8% Similarity=-0.068 Sum_probs=139.0
Q ss_pred cCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh----------cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 54 QQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLAR----------ARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
.+..++|+.+++++++.+|+ +..+|+.....+.. .|++++|+..++.+.+..|. +...|..+..+
T Consensus 42 ~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk--~~~~~~~~~~~ 116 (334)
T d1dcea1 42 GELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWL 116 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC--cHHHHHHhhHH
Confidence 34457888888888777774 45555444333322 23356677777776664333 44555555555
Q ss_pred HHhcC--ChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCC
Q 043284 124 YGLAG--RPELAVKTFLRIEKFNVQRSVRSLN-TLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDD 200 (527)
Q Consensus 124 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (527)
+...+ ++++|+..++++.+.. +.+...+. .....+...+.+++|+..++.+... .+-+...|+.+..++.+.|+
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcC
Confidence 55444 3667777777776654 34444443 3335555566777777777666654 22345566666666666666
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 043284 201 VEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDE 280 (527)
Q Consensus 201 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 280 (527)
+++|...+....+.. |+ .......+...+..+++...+....... +++...+..+...+...|++++|...+.+
T Consensus 194 ~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 194 QPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666655444433320 11 1112223344455555666666555543 22344444555555566666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043284 281 MEDNGVEPNEVTYGVMIEAFCKGKKSGEARNLLDDMLQR 319 (527)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (527)
..+.. +.+..++..+..++...|+.++|.+.+++..+.
T Consensus 268 ~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 268 LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55442 113455555666666666666666666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=7.1e-11 Score=102.26 Aligned_cols=221 Identities=13% Similarity=-0.057 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHhcccCCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHH
Q 043284 55 QNLDLALQIFHYAGKFHPNFS-HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELA 133 (527)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 133 (527)
.+.+.|+..+++++...+... ....++..++.++.+.|++++|+..|+++.+..|. +..+|..+..++...|++++|
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHHHHHHHHh
Confidence 345667777777765433211 12457888889999999999999999999987554 677888999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 043284 134 VKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS 213 (527)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 213 (527)
++.|+++.+.. +.+..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+......
T Consensus 91 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 91 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999876 456778888899999999999999999988876 223344444444445555555555555544444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043284 214 MGMVPNLVTHTTILGGYVWRGDI----ENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDN 284 (527)
Q Consensus 214 ~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 284 (527)
.. ++...++ ++..+...... +.+...+....... +-...+|..+...+...|++++|.+.|++....
T Consensus 168 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 168 SD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp SC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 32 1211222 22222221111 11111111111110 112335566777777788888888888877765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=4e-11 Score=108.19 Aligned_cols=262 Identities=10% Similarity=-0.027 Sum_probs=171.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHH----------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-
Q 043284 236 IENAKRVFGDILDRGWVPDATTYTVLMDG----------YIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCKGK- 304 (527)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 304 (527)
.++|+++++.+++..+ -+...|+..-.. +...|++++|+..+++..+.. +.+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P-~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 4566666666665431 133334332222 223345677888888877653 235666666666665554
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 043284 305 -KSGEARNLLDDMLQRKYVPSSAL-CCKVIDLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKL 382 (527)
Q Consensus 305 -~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (527)
++++|...+..+.+.... +... +......+...+.++.|+..++.+...++ -+...+..+..++.+.|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 477888888888776444 3333 33445666677888888888888887764 3677777888888888887776555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 043284 383 FDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFP 462 (527)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 462 (527)
+.......+.+ ..+...+...+..+++...+....... +++...+..+...+...|+..+|...+.+..+.. |
T Consensus 201 ~~~~~~~~~~~----~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p 273 (334)
T d1dcea1 201 GRLPENVLLKE----LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--K 273 (334)
T ss_dssp CSSCHHHHHHH----HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--H
T ss_pred HHHhHHhHHHH----HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--c
Confidence 54432211111 122334455666777777777777652 3345556666677777888999999988887643 4
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 043284 463 -NKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRI 508 (527)
Q Consensus 463 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~ 508 (527)
+...+..++.++.+.|++++|.+.++++.+.+|.+...|..+...+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3456778888999999999999999999998877777777775543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.4e-08 Score=74.82 Aligned_cols=106 Identities=18% Similarity=0.055 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..+...|++++|+..|+++++.+| .++..|..++.++...|++++|+..++++.+..|. +...|..+..+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~ 80 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---cchhhhhcccccccccccccccchhhhhHHHhccc--hhhHHHHHHHH
Confidence 34567778888888888888888887776 46778888888888888888888888888876443 66777888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
+...|++++|+..|++..+.. |.+...+..+
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 111 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 111 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 888888888888888888764 3344444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=3.6e-08 Score=77.35 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..+.+.|++++|+..|+.+++.+|. +...|..++.++...|++++|...|+++.+..|. +..+|..++.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~--~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc--chHHHHHHHHH
Confidence 556777888999999999999999888774 7788888999999999999999999988886443 66788888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
+...|++++|+..+++..... +.+...+..+..
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~ 120 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQE 120 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 999999999999999888875 445555544433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=8.3e-08 Score=83.79 Aligned_cols=172 Identities=12% Similarity=-0.029 Sum_probs=92.2
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCC---CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCC---C-CCcChh
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNF---SHNYDTYHSIIHKLARARAFDAVESLLTELKQNP---E-IKCGEN 115 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~-~~~~~~ 115 (527)
.|...+.+|..+|++++|.+.|+++....... .....+|..++.+|.+.|++++|.+.++++.+.. + ......
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 46666777777777777777777765432111 1113456666777777777777777777655431 1 111123
Q ss_pred hHHHHHHHHH-hcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCh----
Q 043284 116 LFITVIRNYG-LAGRPELAVKTFLRIEKF----NVQR-SVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNV---- 185 (527)
Q Consensus 116 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 185 (527)
.+..+...|. ..|++++|++.+++..+. +.++ ...++..+...+...|++++|...|+++.......+..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 3444555553 346777777777665432 1111 12345556666666666666666666655432111110
Q ss_pred -hhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 186 -FTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 186 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
..+...+..+...|+++.|...+++..+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11233344455566666666666666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=7.1e-08 Score=84.23 Aligned_cols=59 Identities=7% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhC---CCCC-cChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 84 IIHKLARARAFDAVESLLTELKQN---PEIK-CGENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
.+..|...|++++|.+.|+++.+. .+.+ .....|..+..+|.+.|++++|++.+++..+
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 355566666677776666666543 1110 1123455566666666666666666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.6e-07 Score=75.96 Aligned_cols=123 Identities=9% Similarity=-0.006 Sum_probs=92.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHh
Q 043284 47 LVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGL 126 (527)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (527)
.+..+...|+++.|++.|+.+ .+ +++.+|..++.++...|++++|++.|+++.+..|. ....|..+..++.+
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i---~~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~--~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV---QD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS---SS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhc---CC---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh--hhhhHHHHHHHHHh
Confidence 466778889999999998876 22 46778888999999999999999999998887554 67788888888999
Q ss_pred cCChhHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043284 127 AGRPELAVKTFLRIEKFNVQR---------------SVRSLNTLLNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
.|++++|++.|++........ ...++..+..++.+.|++++|.+.|+....
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999888876532100 023455566677777777777777776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.5e-07 Score=74.81 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=91.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043284 84 IIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNK 163 (527)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (527)
.+..+...|++++|++.|+++.. ++..+|..+..++...|++++|++.|++.++.+ +.....|..+..++.+.|
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i~~-----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhc
Confidence 35667788999999999986532 366788889999999999999999999999887 567888999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCC--------------ChhhHHHHHHHHHcCCChHHHHHHHHhcccC
Q 043284 164 RYDLVHLMFKNSRHKFKVVP--------------NVFTCNILIKALCKKDDVEGAIRVLDEMPSM 214 (527)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 214 (527)
++++|...|++........+ ...++..+..++.+.|++++|.+.|......
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999998888764311000 0123344555566666666666666655544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.1e-07 Score=68.34 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+...+..+...|++++|+..|+++.+..|. +...|..+..++...|++++|+..+++..+.+ +.+...|..+..++.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHH
Confidence 344566677778888888888888776444 66677778888888888888888888887776 567777888888888
Q ss_pred hcCCHHHHHHHHHHhhhc
Q 043284 161 QNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~ 178 (527)
..|++++|+..|++....
T Consensus 83 ~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888888887754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.75 E-value=4.2e-05 Score=65.10 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 043284 376 IWEAKKLFDEFERGSIPSLLTYNTLIAGMCE----SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKE 447 (527)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 447 (527)
...+...+..... ..+...+..+...|.. ..+...+..+++...+.| +......+...+.. ..++++
T Consensus 126 ~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 126 FKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhh
Confidence 4444444444322 1344555555555554 355666667777666553 44555555555543 567888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043284 448 GIRILEEMLDKGCFPNKTSFSLLIEGLYE----SGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 495 (527)
|+.+|++..+.| +...+..|+..|.+ ..+.++|.++|+++...+.
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888888888876 55666677777765 3378888888888877764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=7.6e-06 Score=69.91 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHhhh
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLAR----ARAFDAVESLLTELKQ 106 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 106 (527)
+..|+..+.+++++++|++.|+++.+ . .+..++..+...+.. ..++..|...++....
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~--~---g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACD--L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 34455555555555555555555532 1 144455555555443 3445555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.3e-07 Score=74.13 Aligned_cols=95 Identities=4% Similarity=0.012 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+...+..+.+.|++++|+..|+++.+..|. +...|..+..+|...|++++|++.|++.++.+ +.+..+|..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 444566677888888888888888876544 67778888888888888888888888888775 566778888888888
Q ss_pred hcCCHHHHHHHHHHhhhc
Q 043284 161 QNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~ 178 (527)
..|++++|...+++....
T Consensus 90 ~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 888888888888888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=1.2e-08 Score=84.03 Aligned_cols=99 Identities=8% Similarity=-0.110 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHH
Q 043284 40 QRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFIT 119 (527)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (527)
+...+...+..+++.|++++|+..|+.+++.+| .++.+|..++.+|.+.|++++|+..|+++.+..|. +...|..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p---~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~--~~~a~~~ 77 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFF 77 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC--cHHHHHH
Confidence 334466778888888888888888888887776 36778888888888888888888888888876444 5667888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 043284 120 VIRNYGLAGRPELAVKTFLRIEKF 143 (527)
Q Consensus 120 l~~~~~~~g~~~~A~~~~~~~~~~ 143 (527)
+..+|...|++++|+..|++..+.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888888877654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=3.9e-08 Score=71.65 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
.....++..+.+.|++++|+..|+++++..|. ++.+|..++.++.+.|++++|+..|+++.+..|. +..++..+.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la 91 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALA 91 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc---cchhhhhhhhhhhhhhhHHHhhcccccccccccc--cccchHHHH
Confidence 44567788889999999999999999888774 6789999999999999999999999998886554 677888899
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 043284 122 RNYGLAGRPELAVKTFLRIE 141 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~ 141 (527)
.+|...|++++|++.+++.+
T Consensus 92 ~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=1e-07 Score=78.15 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 043284 76 HNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTL 155 (527)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 155 (527)
|+...+...+..+.+.|++++|+..|+++.+..|. +..+|..+..+|.+.|++++|+..|++.++.. |.+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~--~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 57777888888899999999999999888876544 77788888889999999999999999988765 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 043284 156 LNALVQNKRYDLVHLMFKNSRH 177 (527)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~ 177 (527)
..+|...|++++|+..|++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999988887764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.4e-07 Score=68.19 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC---CchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARAR---AFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..++..+...+++++|.+.|+.+++..| .++.++..++.++.+.+ ++++|+.+|+++....+.+....++..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p---~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 4678888889999999999999988877 47888999998887655 44569999999887543222234677888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
.+|.+.|++++|++.|+++++.. |.+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~-P~~~~A 108 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTE-PQNNQA 108 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhC-cCCHHH
Confidence 99999999999999999998875 334443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=5e-07 Score=67.44 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcC-----hhhHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCG-----ENLFI 118 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 118 (527)
++.++..+.+.|++++|+..|+.+++.+| .+..++..+..++.+.|++++|++.++++.+..+..+. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788899999999999999999998877 47889999999999999999999999998875222111 23556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
.+...+...+++++|++.|++.... .++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 6777778888888999888887764 344443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.3e-06 Score=68.81 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCC------------HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCC
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHN------------YDTYHSIIHKLARARAFDAVESLLTELKQNPEIK 111 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 111 (527)
+...+..+++.|++++|+..|+.+++..+..... ..+|..+..+|.+.|++++|+..++.+....|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 4567788999999999999999998665432211 123444555555555666666555555554332
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 112 CGENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 112 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+..++..+..++...|++++|+..|++..+.+
T Consensus 95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 44455555555555566666666665555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=0.00025 Score=61.47 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=73.6
Q ss_pred CCCCCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHH
Q 043284 39 PQRLYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFI 118 (527)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (527)
|+......++..+.+.|.++.|..+|..+ . -|..++..+.+.+++..|.+++.+.. +..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~--------~---d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k 73 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------S---NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWK 73 (336)
T ss_dssp C----------------CTTTHHHHHHHT--------T---CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC--------C---CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHH
Confidence 34555666777777777777777777766 1 35666667777777777777766542 345666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcC
Q 043284 119 TVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKK 198 (527)
Q Consensus 119 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (527)
.+...+........+ .+.......++.....++..|-..|.+++...+++..... ..++...++.++..|++.
T Consensus 74 ~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 74 EVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHh
Confidence 667777666555433 1222223345555566777777777777777777765432 234555666777777665
Q ss_pred C
Q 043284 199 D 199 (527)
Q Consensus 199 ~ 199 (527)
+
T Consensus 147 ~ 147 (336)
T d1b89a_ 147 K 147 (336)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.51 E-value=4.7e-07 Score=65.71 Aligned_cols=92 Identities=5% Similarity=-0.013 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+...+..+.+.|++++|+..|+++....|. +..+|..+..++.+.|++++|+..|++..+.. |.+..++..+..+|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 344556666677777777777776665443 55666667777777777777777777776664 455666666777777
Q ss_pred hcCCHHHHHHHHHHh
Q 043284 161 QNKRYDLVHLMFKNS 175 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~ 175 (527)
..|++++|.+.|++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.9e-07 Score=65.27 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 043284 400 LIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPNK-TSFSLLIEGLY 475 (527)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 475 (527)
++..+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+|++++..+..|+. .++..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3444445555555555555555432 2234444445555544332 23455555555443211111 23444555555
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 043284 476 ESGNEGEVGKVVSMATASGS 495 (527)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~ 495 (527)
+.|++++|++.|+++.+..|
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhHHHHHHHHHHHHhCc
Confidence 55555555555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.4e-06 Score=64.72 Aligned_cols=74 Identities=11% Similarity=-0.084 Sum_probs=57.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHH
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLL 505 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll 505 (527)
+|+.+..+|.+.|++++|+..++++++.+ +.+...+..++.+|...|++++|...|+++.+..|.+..+...+-
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~ 137 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 137 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46667778888899999999888888753 226677888888888999999999999998888776666554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.41 E-value=2.5e-06 Score=65.80 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
++.-+..+++.|++.+|+..|+.++...+......... .. ..... ....+|..+..+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~----------------~~--~~~~~-----~~~~~~~Nla~~ 76 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI----------------LL--DKKKN-----IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH----------------HH--HHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHH----------------HH--Hhhhh-----HHHHHHhhHHHH
Confidence 45677888999999999999999876544322110000 00 00000 011244455556
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
|.+.|++++|++.+++.++.+ |.+..+|..+..++...|++++|...|++....
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665554 445556666666666666666666666665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.38 E-value=4.5e-06 Score=65.56 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=57.4
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCC-C-----------HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSH-N-----------YDTYHSIIHKLARARAFDAVESLLTELKQNPEI 110 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 110 (527)
.++..+..+++.|++.+|+..|+.++...+.... + ...|..+..++.+.|++++|+..++.+.+..|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~ 96 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence 3567788899999999999999988754332211 1 112333444555555555555555555554332
Q ss_pred CcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043284 111 KCGENLFITVIRNYGLAGRPELAVKTFLRIEKFN 144 (527)
Q Consensus 111 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 144 (527)
+...|..+..++...|++++|+..|+++++.+
T Consensus 97 --~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 97 --NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44455555555555555555555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=0.00051 Score=59.47 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHH
Q 043284 42 LYPKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVI 121 (527)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 121 (527)
..+..++..+.+.++++.|...+.+. .+..+|..+...+.+..+...|.- .. .+..........++
T Consensus 41 ~d~~rl~~~~v~l~~~~~avd~~~k~--------~~~~~~k~~~~~l~~~~e~~la~i-----~~-~~~~~~~d~l~~~v 106 (336)
T d1b89a_ 41 SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQM-----CG-LHIVVHADELEELI 106 (336)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHH-----TT-TTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhhccHHHHHHHHHHc--------CCHHHHHHHHHHHHhCcHHHHHHH-----HH-HHhhcCHHHHHHHH
Confidence 35567777788888888888877766 367799999999988776654322 11 12223555567789
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043284 122 RNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKN 174 (527)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (527)
..|-..|.+++...+++...... +.+...++.++..|++.+ .++..+.++.
T Consensus 107 ~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 107 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 99999999999999999887543 567778889999898865 3444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.29 E-value=1e-05 Score=63.86 Aligned_cols=125 Identities=12% Similarity=0.019 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHH
Q 043284 45 KRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNY 124 (527)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (527)
...+..+...|++++|.+.|..++...+|..... ....+.+...-..+... ....+..++..+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~ 77 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LRDFQFVEPFATALVED-----KVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GTTSTTHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc------------CcchHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4566778899999999999999988776532210 01111111111222211 234566777777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----cCCCCCChhh
Q 043284 125 GLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRH----KFKVVPNVFT 187 (527)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 187 (527)
...|++++|+..++++.... +.+...|..++.++...|+.++|++.|+++.. ..|+.|...+
T Consensus 78 ~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888888887766 56777788888888888888888888777643 3477777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2.9e-07 Score=86.81 Aligned_cols=228 Identities=9% Similarity=-0.064 Sum_probs=124.2
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHH
Q 043284 59 LALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFL 138 (527)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 138 (527)
+|.+.|+++++.+|+. ..++..+..++...|++++| |+++...++. ....+. +....-...+..+.+.++
T Consensus 4 eA~q~~~qA~~l~p~~---a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~--~a~~~~--~e~~Lw~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDL---YQKMLVTDLE--YALDKK--VEQDLWNHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHHGGG---TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH--HHHHHT--HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---HHHHhhHHHHHHHHchHHHH---HHHHHHcChh--hHHHHh--HHHHHHHHHHHHHHHHHH
Confidence 6788888888777653 33566667777777777765 6666543221 001111 111111122456777777
Q ss_pred HHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCC
Q 043284 139 RIEKFNVQRSVRSLNTLL--NALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGM 216 (527)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 216 (527)
...+....++..-..... ......+.++.++..+...... ..++...+..+...+.+.|+.+.|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH-
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 766544333322222111 1222344555555544443322 12345667778888888899988888777655421
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043284 217 VPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVM 296 (527)
Q Consensus 217 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (527)
...++..+...+...|++++|...|.+..+.. +.+...|+.+...+...|+..+|+..|.+..... +|-..++..|
T Consensus 151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 23567778888999999999999999998875 3467889999999999999999999999988764 4567778888
Q ss_pred HHHHHcc
Q 043284 297 IEAFCKG 303 (527)
Q Consensus 297 ~~~~~~~ 303 (527)
...+.+.
T Consensus 227 ~~~~~~~ 233 (497)
T d1ya0a1 227 QKALSKA 233 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=6.2e-06 Score=64.86 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 44 PKRLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
+...+..+...|++++|+..|+++++..+ .......... ..... +.....+..+..+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~--------------~~~~~~~~~~-------~~~~~--~~~~~~~~nla~~ 86 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVE--------------GSRAAAEDAD-------GAKLQ--PVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------HHHHHSCHHH-------HGGGH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------hhhhhhhhHH-------HHHhC--hhhHHHHHHHHHH
Confidence 45667778889999999999988853211 0000000000 00000 1133345555555
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+.+.|++++|+..++++++.. +.+..+|..+..++...|++++|+..|++..+.
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666665554 345555666666666666666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=7.6e-06 Score=60.75 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-----HHHHHHHHHHH
Q 043284 366 IIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKGV-EPN-----VFTYNMLIQGF 439 (527)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-----~~~~~~l~~~~ 439 (527)
+...+...|++++|...|++.....|.+...+..+..+|...|++++|+..++++++... .+. ..+|..+...+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444444555555555555555555555555555543200 000 12334444444
Q ss_pred HccCCHHHHHHHHHHHHH
Q 043284 440 CKIGNAKEGIRILEEMLD 457 (527)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~ 457 (527)
...+++++|++.|++.+.
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 455555555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=2.6e-05 Score=59.85 Aligned_cols=74 Identities=15% Similarity=-0.047 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHH
Q 043284 430 FTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFL 504 (527)
Q Consensus 430 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 504 (527)
.+|..+..+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|...|+++.+..|.+..++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356778888999999999999999999864 33678899999999999999999999999999887777665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=2.6e-05 Score=60.99 Aligned_cols=75 Identities=7% Similarity=-0.019 Sum_probs=59.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHH
Q 043284 431 TYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLT 506 (527)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~ 506 (527)
.|..+..+|.+.|++++|+..++++++.. +.+...+..++.++...|++++|...|+++....|.+..++..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667778888999999999999998753 3466778888899999999999999999998888777666555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=3e-06 Score=79.69 Aligned_cols=228 Identities=11% Similarity=-0.036 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHH
Q 043284 238 NAKRVFGDILDRGWVPD-ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNE-VTYGVMIEAFCKGKKSGEARNLLDD 315 (527)
Q Consensus 238 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (527)
+|.+.|+++.+. .|+ ...+..+..++...|++++| |+++... .|+. ...+.. ...-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence 678888888775 333 45666677788888888776 6676654 2221 111111 11111224556677776
Q ss_pred HHHcCCCCCHHhHHHHH--HHHHhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 043284 316 MLQRKYVPSSALCCKVI--DLLCEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPS 393 (527)
Q Consensus 316 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (527)
..+....++..-..... ......+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence 66544333332222211 12223455566655555444432 2345566677777888888888887776653211 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043284 394 LLTYNTLIAGMCESAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNKTSFSLLIEG 473 (527)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 473 (527)
..++..++..+...|++++|...|++..+.. +.+...|+.+...+...|+..+|+..|.+.+... +|...++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3567778888888999999999999988762 3346788999999999999999999999998753 4667778888777
Q ss_pred HHhcCC
Q 043284 474 LYESGN 479 (527)
Q Consensus 474 ~~~~g~ 479 (527)
+.+..+
T Consensus 230 ~~~~~~ 235 (497)
T d1ya0a1 230 LSKALE 235 (497)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.04 E-value=3.7e-06 Score=71.04 Aligned_cols=125 Identities=12% Similarity=-0.001 Sum_probs=86.9
Q ss_pred HHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcC
Q 043284 49 SMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAG 128 (527)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 128 (527)
.-..++|++++|+..++..++.+| .+...+..++..++..|++++|.+.++.+.+..|. ....+..+...+...+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P---~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~--~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASP---KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--YLPGASQLRHLVKAAQ 78 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcc
Confidence 345678999999999999999888 48889999999999999999999999999886443 4445544544444444
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 129 RPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
..+++..........+.+++...+......+...|+.++|.+.++++.+.
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 44333322222222222223344445566777889999999999887765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=5.9e-05 Score=59.33 Aligned_cols=128 Identities=12% Similarity=0.016 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043284 80 TYHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNAL 159 (527)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (527)
.....+......|++++|.+.|.++....+..+-.. .....-+...-..+.. .....+..+...+
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-----------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~ 77 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-----------LRDFQFVEPFATALVE----DKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-----------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-----------CcchHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 445566778899999999999999998633221110 0111111111222221 2245677889999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhccc-----CCCCCCHHHHH
Q 043284 160 VQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPS-----MGMVPNLVTHT 224 (527)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 224 (527)
...|++++|+..++++... .+-+...|..++.++...|+..+|++.|+++.. .|+.|+..+-.
T Consensus 78 ~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999999999886 345788999999999999999999999998743 58999976643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=3e-05 Score=60.76 Aligned_cols=131 Identities=6% Similarity=-0.036 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 81 YHSIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
+......+...|++++|+..|+++.+.. ..........+. .... +.....+..+..++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------~~~~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-------------EGSRAAAEDADG-------AKLQ-PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHHHHSCHHHH-------GGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------hhhhhhhhhHHH-------HHhC-hhhHHHHHHHHHHHH
Confidence 3445666778899999999988876520 000000111111 1111 234567788899999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGD 235 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 235 (527)
+.|++++|+..+++..+. .+.+...|..+..++...|++++|++.|++..+... .+......+..+..+...
T Consensus 89 ~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 999999999999999875 344678899999999999999999999999988652 255666666655544333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.88 E-value=1.6e-05 Score=60.40 Aligned_cols=88 Identities=13% Similarity=-0.042 Sum_probs=63.9
Q ss_pred HHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhc----------CCchHHHHHHHHhhhCCCCCcChhhHHHH
Q 043284 51 IFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLARA----------RAFDAVESLLTELKQNPEIKCGENLFITV 120 (527)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 120 (527)
+-+.+.+++|+..|+.+++.+| .++.++..++.++... +.+++|+..|+++.+..|. +...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P---~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~--~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNP---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCC---cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch--hhHHHhhH
Confidence 4556779999999999999888 4888888888888754 4456788888888776444 56677777
Q ss_pred HHHHHhcCC-----------hhHHHHHHHHHHhc
Q 043284 121 IRNYGLAGR-----------PELAVKTFLRIEKF 143 (527)
Q Consensus 121 ~~~~~~~g~-----------~~~A~~~~~~~~~~ 143 (527)
..+|...|+ +++|.+.|++..+.
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 777765543 46666666666664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.84 E-value=3e-05 Score=65.32 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=69.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHcCCChH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPN-VFTCNILIKALCKKDDVE 202 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 202 (527)
..+.|++++|+..+++.++.. |.+...+..+...++..|++++|...|+...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345677777777777777765 566677777777777777777777777777654 333 333433434333333333
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043284 203 GAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDR 249 (527)
Q Consensus 203 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (527)
++..........+.+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32222222111121222333444455666777777777777776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=4.5e-05 Score=57.76 Aligned_cols=73 Identities=8% Similarity=-0.021 Sum_probs=50.5
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 88 LARARAFDAVESLLTELKQNPEIKCGENLFITVIRNYGLA----------GRPELAVKTFLRIEKFNVQRSVRSLNTLLN 157 (527)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 157 (527)
+.+.+.|++|+..|+.+.+..|. +..++..+..++... +.+++|+..|++.++.+ |.+..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHH
Confidence 34556688899999888887554 666777777776643 34567777777777765 556677777777
Q ss_pred HHHhcC
Q 043284 158 ALVQNK 163 (527)
Q Consensus 158 ~~~~~g 163 (527)
+|...|
T Consensus 84 ~y~~~g 89 (145)
T d1zu2a1 84 AYTSFA 89 (145)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.79 E-value=3.6e-05 Score=59.32 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=63.6
Q ss_pred HHHHHhcCChhHHHHHHHHhcccCCCCCC---------CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCC----CCCc--
Q 043284 48 VSMIFRQQNLDLALQIFHYAGKFHPNFSH---------NYDTYHSIIHKLARARAFDAVESLLTELKQNP----EIKC-- 112 (527)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-- 112 (527)
+..+++.|++++|++.|++++...+..+. ....|..+..++...|++++|...+++..+.. ...+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 66777889999999999999876665432 13467777888888888888888877766431 1111
Q ss_pred ---ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043284 113 ---GENLFITVIRNYGLAGRPELAVKTFLRIEK 142 (527)
Q Consensus 113 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 142 (527)
...++..+..+|...|++++|++.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345566666777777777777666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=3.1e-05 Score=53.64 Aligned_cols=67 Identities=7% Similarity=-0.055 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHhcccCCCC---CCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhCCC
Q 043284 43 YPKRLVSMIFRQQNLDLALQIFHYAGKFHPNF---SHN-YDTYHSIIHKLARARAFDAVESLLTELKQNPE 109 (527)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (527)
.+..++..+.++|++++|+..|+++++..+.. .++ ..++..++.++.+.|++++|+..++++.+..|
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 34456666666666666666666665443221 111 34555566666666666666666666555433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00027 Score=48.68 Aligned_cols=78 Identities=6% Similarity=-0.021 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhCCCC----C-cChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 043284 77 NYDTYHSIIHKLARARAFDAVESLLTELKQNPEI----K-CGENLFITVIRNYGLAGRPELAVKTFLRIEKFNVQRSVRS 151 (527)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 151 (527)
+...+..++..+.+.|++++|+..|+++.+..+. . ....++..+..++.+.|++++|+..++++++.. |.+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 5667888999999999999999999988765111 1 124578889999999999999999999998876 455666
Q ss_pred HHHH
Q 043284 152 LNTL 155 (527)
Q Consensus 152 ~~~l 155 (527)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.52 E-value=0.0011 Score=50.56 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=70.0
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----
Q 043284 396 TYNTL--IAGMCESAELTEAGRLWDDMVEKGV-EPN----------VFTYNMLIQGFCKIGNAKEGIRILEEMLDK---- 458 (527)
Q Consensus 396 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 458 (527)
+|..+ +..+...|++++|+..|++.++... .|+ ..+|+.+..+|...|++++|+..+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455667888888888888775311 111 356778888899999999999988888742
Q ss_pred -CCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043284 459 -GCFPNK-----TSFSLLIEGLYESGNEGEVGKVVSMATASG 494 (527)
Q Consensus 459 -~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (527)
...++. ..+..++.+|...|++++|...|+++.+..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122221 246778899999999999999999987653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.15 E-value=0.018 Score=40.10 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=94.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHH
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEG 203 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (527)
+...|..++..+++.+... +.+..-|+.++.-....-+-+...+.++..-..+++.| .++...
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 4557888888888888876 35666677777777777777777888877766654433 233333
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043284 204 AIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIENAKRVFGDILDRGWVPDATTYTVLMDGYIKLGRLTDAVKVMDEMED 283 (527)
Q Consensus 204 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 283 (527)
....+-.+-. +...+...+.....+|.-+.-.++++.+.+.+ ++++.....+..+|.+.|...++-+++.++-+
T Consensus 75 vv~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344333322 34455566667777777777777777766643 56777777777777788888888777777777
Q ss_pred CCCC
Q 043284 284 NGVE 287 (527)
Q Consensus 284 ~~~~ 287 (527)
.|+.
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 7653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.83 E-value=0.022 Score=41.47 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 043284 407 SAELTEAGRLWDDMVEKGVEPNVFTYNMLIQGFCK----IGNAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYE----SG 478 (527)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 478 (527)
..+.++|++++++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 355667777777766654 33444444444432 346777778887777765 44555556666655 34
Q ss_pred ChhHHHHHHHHHHhCCCC
Q 043284 479 NEGEVGKVVSMATASGSV 496 (527)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~ 496 (527)
+.++|.++++++.+.+.+
T Consensus 110 d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHCCCH
Confidence 677778888877776643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.69 E-value=0.027 Score=41.05 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHHH
Q 043284 271 LTDAVKVMDEMED 283 (527)
Q Consensus 271 ~~~a~~~~~~~~~ 283 (527)
.++|.++|++..+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhc
Confidence 3333333333333
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.55 Score=42.13 Aligned_cols=119 Identities=8% Similarity=-0.041 Sum_probs=63.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh--cCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH
Q 043284 46 RLVSMIFRQQNLDLALQIFHYAGKFHPNFSHNYDTYHSIIHKLAR--ARAFDAVESLLTELKQNPEIKCGENLFITVIRN 123 (527)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (527)
..+....++|+..++.++...+ +..| ...|...-..-.. ....++....+++.. ..+.....-...+..
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L-~dyp-----L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p---~~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGL-KDYP-----LYPYLEYRQITDDLMNQPAVTVTNFVRANP---TLPPARTLQSRFVNE 81 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGG-TTST-----THHHHHHHHHHHTGGGCCHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhh-cCCC-----CHHHHHHHHHHhccccCCHHHHHHHHHHCC---CChhHHHHHHHHHHH
Confidence 4455667788888888887776 2222 1223322222222 234444444433322 222233333445566
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 043284 124 YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALVQNKRYDLVHLMFKNSRHK 178 (527)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (527)
+.+.++++..+..+. ..+.+...-.....+....|+.++|...+..+-..
T Consensus 82 L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 82 LARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 677777766444331 12455665566777777888888877776655433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.77 E-value=0.17 Score=35.13 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=24.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043284 367 IHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVEKG 424 (527)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (527)
+..+..+|.-+...+++..+.+...+++.....+..+|-+.|...++-+++.+.-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3334444444444444444333333444444444444444444444444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.68 Score=41.51 Aligned_cols=315 Identities=9% Similarity=0.047 Sum_probs=158.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhCCCCCcChhhHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043284 83 SIIHKLARARAFDAVESLLTELKQNPEIKCGENLFITVIRN--YGLAGRPELAVKTFLRIEKFNVQRSVRSLNTLLNALV 160 (527)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (527)
..+....+.|+...+.++...+.. .|.. .|...-.. -.......+...++++-.. .+.........+..+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d-ypL~----pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD-YPLY----PYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT-STTH----HHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC-CCCH----HHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHH
Confidence 444556688999998888888753 3432 23322222 2233445554444433221 1112223344566778
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHcCCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH--
Q 043284 161 QNKRYDLVHLMFKNSRHKFKVVPNVFTCNILIKALCKKDDVEGAIRVLDEMPSMGMVPNLVTHTTILGGYVWRGDIEN-- 238 (527)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-- 238 (527)
+.++++.....+. ..+.+...-.....+....|+.+.|...+..+-..|.. .......+...+...|....
T Consensus 84 ~~~~w~~~~~~~~------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt~~~ 156 (450)
T d1qsaa1 84 RREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLA 156 (450)
T ss_dssp HTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHH
T ss_pred hccCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCCHHH
Confidence 8888877554331 12345555567778888899999998888776555422 23333444444444433221
Q ss_pred HHHHHHHHHHCC-----------CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC
Q 043284 239 AKRVFGDILDRG-----------WVPD-ATTYTVLMDGYIKLGRLTDAVKVMDEMEDNGVEPNEVTYGVMIEAFCK--GK 304 (527)
Q Consensus 239 a~~~~~~~~~~~-----------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~ 304 (527)
..+-+..+...| ++++ .......+.... +...+.... ... ..+......+..++.+ ..
T Consensus 157 ~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~~~l~rla~~ 228 (450)
T d1qsaa1 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAAVAFASVARQ 228 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHHHHHHHHhcc
Confidence 112222222221 0111 111122222211 111111111 111 1222222222333322 35
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----HhcCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 043284 305 KSGEARNLLDDMLQRKYVPSSALCCKVIDLL----CEEGKVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAK 380 (527)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (527)
+.+.+..++......... +......+.... ...+..+.+...+......+ .+.......+......+++..+.
T Consensus 229 d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence 677777777777664332 222222222222 23455677777777666553 23444444555556678888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043284 381 KLFDEFERGSIPSLLTYNTLIAGMCESAELTEAGRLWDDMVE 422 (527)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (527)
..+..+.........-.-=++.++...|+.+.|..+|.....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 888877433222333334456777788888888888887753
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.57 E-value=0.13 Score=33.73 Aligned_cols=66 Identities=5% Similarity=0.129 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 043284 444 NAKEGIRILEEMLDKGCFPNKTSFSLLIEGLYESGNEGEVGKVVSMATASGSVESDSWNFLLTRIV 509 (527)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ll~~~~ 509 (527)
|.-++.+-++.+...++.|++.+..+.+++|.|.+++.-|.++++....+..++...|..++..+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqelk 86 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 86 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 566777888888888888999999999999999999999999999887777666778888877544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.11 Score=36.41 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCh
Q 043284 427 PNVFTYNMLIQGFCKIGN---AKEGIRILEEMLDKGCFPNK-TSFSLLIEGLYESGNEGEVGKVVSMATASGSVES 498 (527)
Q Consensus 427 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (527)
+...+--...+++.++.+ .++++.++++..+.+ +.+. ..+..|+.+|.+.|++++|.+.++++.+..|.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 445555556666665543 457777887777643 1232 4566777778888888888888888877765544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.25 Score=34.59 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 043284 392 PSLLTYNTLIAGMCESA---ELTEAGRLWDDMVEKGVEP-N-VFTYNMLIQGFCKIGNAKEGIRILEEMLDKGCFPNK 464 (527)
Q Consensus 392 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 464 (527)
++..+--..+.++++.. +.++++.+|+.+... .| + ...+..|.-+|.+.|++++|.+.++.+++ +.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 44555555556665543 345667777766654 23 2 24555566667777777777777777776 34554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.77 E-value=0.94 Score=29.66 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=40.4
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043284 340 KVEDACELWKRLLRKNCMPDNAISSTIIHWLCKEGKIWEAKKLFDEFERGSIPSLLTYNTLIA 402 (527)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (527)
|.-++.+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++....++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344566666666666777777777777777777777777777777774433334445554443
|