Citrus Sinensis ID: 043353

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MARPRTARNRSPVSKQESYKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQEVEVVAKKFEEEEIMSRHLNIISCIGEGLARNS
ccccccccccccccccccccccccccccccccccccEEcccHHHHccHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHcccEEEEccccccccccccccccccEEEEccccHHHHHHHHHHHccccccccccccccHHHHHccccccccHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccEEEEccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccc
cccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccEEcccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEEEcccccccccccHHHccccccccccccccccHHHHEcccccccEccEEEEEHHHHHHHHEcccccEEEEEHHccccccEEcccccHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHcccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccHHHHHccEEEEEEEEccccccEEEEEccccccccccccccEEEEEEcHHHHHHHHHHccHHHHHHHHHHHHHcccccccccc
marprtarnrspvskqesykfkfsdvdwthkisdcpayyptlqefddpfiylqkiapeasqfgickiispvkasVSAADVLKKEikgfefgtyrqplrlpkwnandtgvffsgerkhtydtFESEAIKMLKrqsprlgdlppsyveKKFWLEMthgrkgtveYGVNiegsafssdpndqlgkckwHLKTLRGLPQSIFRFLEhiipgitdpmLYIGMLFSMFAWHVEDhylhsinyhhsgapktwygvpghhalQFEKVARNQVYSRDILSAAGEDGAFEVIAekttifppkilldngVSVYKAVqkpgefvitfprvyhagfsngfncgeavnfairdwfpfgeeAGKRYARLHKMVILPYQELLFKEVsehegtdipssvKATVLHQIRSLNNALFClnnlkmpfdylqnsqgsfvcdlckrdcylafteckscqrytCLFHefksrhcscgynrvvlLRKDIQEVEVVAKKFEEEEIMSRHLNIISCIgeglarns
marprtarnrspvskqesykfkfsdvdwthkISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEikgfefgtyrqplrlpkwnanDTGVFFSGERKHTYDTFESEAIKMLkrqsprlgdlppSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQEVEVVAkkfeeeeimsrhLNIISCIGEGLARNS
MARPRTARNRSPVSKQESYKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQevevvakkfeeeeIMSRHLNIISCIGEGLARNS
******************YKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAI**************PSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFS***NDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQEVEVVAKKFEEEEIMSRHLNIISCIGE******
******************************KISDCPAYYPTLQEFDDPFIYLQKIAPEASQ*GICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATV*****************************SFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQEVEVVAKKFEEEE********************
*****************SYKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQEVEVVAKKFEEEEIMSRHLNIISCIGEGLARNS
*************************VDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRVVLLRKDIQEVEVVAKKFEEEEIMSRHLNIISCI********
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MARPRTARNRSPVSKQESYKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCGYNRxxxxxxxxxxxxxxxxxxxxxEIMSRHLNIISCIGEGLARNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query499 2.2.26 [Sep-21-2011]
Q9STM3 1360 Lysine-specific demethyla no no 0.687 0.252 0.339 6e-55
Q6BDA0 1340 Probable lysine-specific no no 0.370 0.138 0.492 3e-52
Q3UXZ9 1690 Lysine-specific demethyla yes no 0.605 0.178 0.341 8e-50
P29375 1690 Lysine-specific demethyla yes no 0.619 0.182 0.337 1e-49
Q8GUI6 954 Probable lysine-specific no no 0.655 0.342 0.324 3e-49
Q9UGL1 1544 Lysine-specific demethyla no no 0.605 0.195 0.353 6e-47
Q80Y84 1544 Lysine-specific demethyla no no 0.605 0.195 0.353 6e-47
Q62240 1548 Lysine-specific demethyla no no 0.653 0.210 0.330 9e-47
Q30DN6 1545 Lysine-specific demethyla no no 0.621 0.200 0.335 7e-46
Q6IQX0 1503 Lysine-specific demethyla no no 0.623 0.206 0.336 7e-46
>sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1 Back     alignment and function desciption
 Score =  215 bits (548), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 201/398 (50%), Gaps = 55/398 (13%)

Query: 28  WTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKI------------ISPVKASV 75
           W   +   P + PTL EF DP  Y+ KI  EAS++GICKI            IS +  S+
Sbjct: 13  WLKSLPVAPEFRPTLAEFQDPIAYILKIEEEASRYGICKILPPLPPPSKKTSISNLNRSL 72

Query: 76  SAADVLKKEIKGF---------EFGTYRQ----------PLRLPKWNANDTGVFFSGERK 116
           +A    +    GF          F T +Q          P++ P W + +   F  GE +
Sbjct: 73  AARAAARVRDGGFGACDYDGGPTFATRQQQIGFCPRKQRPVQRPVWQSGEEYSF--GEFE 130

Query: 117 HTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAF---- 172
                FE   +K   ++S     L    +E  +W   T  +  +VEY  ++ GSAF    
Sbjct: 131 FKAKNFEKNYLKKCGKKS----QLSALEIETLYW-RATVDKPFSVEYANDMPGSAFIPLS 185

Query: 173 --------SSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAW 224
                   S      +G+  W+++ +     S+ +F++  IPG+T PM+Y+ M+FS FAW
Sbjct: 186 LAAARRRESGGEGGTVGETAWNMRAMSRAEGSLLKFMKEEIPGVTSPMVYVAMMFSWFAW 245

Query: 225 HVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAE 284
           HVEDH LHS+NY H GA KTWYGVP   AL FE+V R   Y  ++         F  + E
Sbjct: 246 HVEDHDLHSLNYLHMGAGKTWYGVPKDAALAFEEVVRVHGYGEELNPLV----TFSTLGE 301

Query: 285 KTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFG 344
           KTT+  P++ +  G+   + VQ PGEFV+TFP  YH+GFS+GFN GEA N A  +W    
Sbjct: 302 KTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPGAYHSGFSHGFNFGEASNIATPEWLRMA 361

Query: 345 EEAGKRYARLHKMVILPYQELLFKEVSEHEGTDIPSSV 382
           ++A  R A ++   ++ + +LL+  V    G+ +P+S+
Sbjct: 362 KDAAIRRAAINYPPMVSHLQLLYDFVLAL-GSRVPTSI 398
Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me. Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay. Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli. Involved in the regulation of flowering time by repressing FLOWERING LOCUS C (FLC) expression.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6BDA0|ELF6_ARATH Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function description
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 Back     alignment and function description
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
225427118 884 PREDICTED: uncharacterized protein LOC10 0.923 0.521 0.558 1e-151
297742048 732 unnamed protein product [Vitis vinifera] 0.923 0.629 0.558 1e-151
255558033 627 transcription factor, putative [Ricinus 0.961 0.765 0.529 1e-150
297737305 1009 unnamed protein product [Vitis vinifera] 0.949 0.469 0.540 1e-150
224138208 873 jumonji domain protein [Populus trichoca 0.965 0.552 0.535 1e-150
225454765 638 PREDICTED: lysine-specific demethylase 5 0.949 0.742 0.540 1e-149
449462073 902 PREDICTED: uncharacterized protein LOC10 0.939 0.519 0.537 1e-149
449528957 868 PREDICTED: uncharacterized protein LOC10 0.939 0.540 0.537 1e-149
224071385 650 jumonji domain protein [Populus trichoca 0.963 0.74 0.534 1e-148
356531447 857 PREDICTED: lysine-specific demethylase 5 0.943 0.549 0.537 1e-148
>gi|225427118|ref|XP_002276932.1| PREDICTED: uncharacterized protein LOC100266131 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/476 (55%), Positives = 335/476 (70%), Gaps = 15/476 (3%)

Query: 14  SKQESYKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKA 73
           SK++  KF  +D++W  KI +CP Y PT ++F+DP +YLQKIAPEAS++GICKIISP+ A
Sbjct: 89  SKRKVDKFDTTDLEWIDKIPECPVYRPTKEDFEDPLVYLQKIAPEASKYGICKIISPLSA 148

Query: 74  SVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQ 133
           SV A  VL KE  GF+F T  QPLRL +W+++D   FF   R +T+  FE  A K+  R+
Sbjct: 149 SVPAGVVLMKEKMGFKFTTRVQPLRLAEWDSDDKVTFFMSGRNYTFRDFEKMANKVFARR 208

Query: 134 SPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGL 193
               G LP SY+EK+FW E+  G+  TVEY  +++GSAFSS PNDQLGK KW+LK L  L
Sbjct: 209 YCSAGCLPSSYLEKEFWHEIACGKTETVEYACDVDGSAFSSSPNDQLGKSKWNLKKLSRL 268

Query: 194 PQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHA 253
           P+SI R LE  IPG+TDPMLYIGMLFSMFAWHVEDHYL+SINYHH GA KTWYG+PGH A
Sbjct: 269 PKSILRLLESEIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAA 328

Query: 254 LQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVI 313
           L+FEKV R  VY+RDILSA GEDGAF+V+  KTT+FPP ILL++ V VYKAVQKPGEFVI
Sbjct: 329 LEFEKVVREHVYTRDILSADGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVI 388

Query: 314 TFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEV--- 370
           TFPR YHAGFS+GFNCGEAVNFAI DWFP G  A +RYA L++M +LP++ELL KE    
Sbjct: 389 TFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRMPLLPHEELLCKEAMLL 448

Query: 371 --------SEHEGTDIPS--SVKATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCD 420
                    ++  TD+ S  S+K + ++ +R  +NA + L   +       NS G+ +C 
Sbjct: 449 YTSLELEDPDYSSTDLASQHSMKLSFVNLMRFQHNARWALMKSRACTAIFPNSGGTVLCS 508

Query: 421 LCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCG--YNRVVLLRKDIQEVEVVAKK 474
           LCKRDCY+A+  C       CL H+  S    CG  +N  + LR+DI E+E  AK+
Sbjct: 509 LCKRDCYVAYLNCNCYLHPVCLRHDVNSLKLPCGSNHNHTLSLREDISEMEAAAKR 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742048|emb|CBI33835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558033|ref|XP_002520045.1| transcription factor, putative [Ricinus communis] gi|223540809|gb|EEF42369.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737305|emb|CBI26506.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224138208|ref|XP_002326545.1| jumonji domain protein [Populus trichocarpa] gi|222833867|gb|EEE72344.1| jumonji domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225454765|ref|XP_002272599.1| PREDICTED: lysine-specific demethylase 5D-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462073|ref|XP_004148766.1| PREDICTED: uncharacterized protein LOC101211852, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449528957|ref|XP_004171468.1| PREDICTED: uncharacterized protein LOC101230902, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224071385|ref|XP_002303434.1| jumonji domain protein [Populus trichocarpa] gi|222840866|gb|EEE78413.1| jumonji domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531447|ref|XP_003534289.1| PREDICTED: lysine-specific demethylase 5C-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
TAIR|locus:2146653 1340 ELF6 "EARLY FLOWERING 6" [Arab 0.370 0.138 0.492 9.1e-62
UNIPROTKB|G4N2P7 1755 MGG_04878 "Lid2 complex compon 0.432 0.123 0.424 5.4e-58
TAIR|locus:2196979 819 JMJ18 "Jumonji domain-containi 0.442 0.269 0.402 8.8e-55
TAIR|locus:504955644 1360 REF6 "relative of early flower 0.555 0.203 0.355 1.4e-54
TAIR|locus:2044697 806 MEE27 "maternal effect embryo 0.721 0.446 0.332 3.6e-54
UNIPROTKB|Q9UGL1 1544 KDM5B "Lysine-specific demethy 0.663 0.214 0.349 4.1e-53
MGI|MGI:1922855 1544 Kdm5b "lysine (K)-specific dem 0.663 0.214 0.349 4.1e-53
RGD|1565602 1546 Kdm5b "lysine (K)-specific dem 0.663 0.214 0.349 4.1e-53
RGD|1305429 1099 Kdm5a "lysine (K)-specific dem 0.605 0.274 0.338 6.9e-53
UNIPROTKB|E9PSW7 1099 Jarid1a "Protein Jarid1a" [Rat 0.605 0.274 0.338 6.9e-53
TAIR|locus:2146653 ELF6 "EARLY FLOWERING 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 503 (182.1 bits), Expect = 9.1e-62, Sum P(3) = 9.1e-62
 Identities = 93/189 (49%), Positives = 126/189 (66%)

Query:   179 QLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHH 238
             +L    W+L+ +   P S+ RF+   IPG+T PM+YIGMLFS FAWHVEDH LHS+NY H
Sbjct:   259 KLSNSSWNLQMIARSPGSVTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNYLH 318

Query:   239 SGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNG 298
             +G+PKTWY VP  +AL FE+V R   Y R+I   A    A   + EKTT+  P++++ +G
Sbjct:   319 TGSPKTWYAVPCDYALDFEEVIRKNSYGRNIDQLA----ALTQLGEKTTLVSPEMIVASG 374

Query:   299 VSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMV 358
             +   + VQ PGEFV+TFPR YH GFS+GFNCGEA NF    W    +EA  R A ++ + 
Sbjct:   375 IPCCRLVQNPGEFVVTFPRSYHVGFSHGFNCGEAANFGTPQWLNVAKEAAVRRAAMNYLP 434

Query:   359 ILPYQELLF 367
             +L +Q+LL+
Sbjct:   435 MLSHQQLLY 443
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP
GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009741 "response to brassinosteroid stimulus" evidence=IMP
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0033169 "histone H3-K9 demethylation" evidence=IMP
GO:0009630 "gravitropism" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|G4N2P7 MGG_04878 "Lid2 complex component lid2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955644 REF6 "relative of early flowering 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1922855 Kdm5b "lysine (K)-specific demethylase 5B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1565602 Kdm5b "lysine (K)-specific demethylase 5B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1305429 Kdm5a "lysine (K)-specific demethylase 5A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PSW7 Jarid1a "Protein Jarid1a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 3e-42
smart0054542 smart00545, JmjN, Small domain found in the jumonj 2e-10
pfam0237534 pfam02375, JmjN, jmjN domain 4e-10
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 3e-09
smart0055858 smart00558, JmjC, A domain family that is part of 1e-08
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score =  145 bits (369), Expect = 3e-42
 Identities = 58/124 (46%), Positives = 71/124 (57%), Gaps = 10/124 (8%)

Query: 212 MLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILS 271
            LY+GM  S   WH+ED  L+SINY H G PK WY +P  +A +FEKV            
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLSKHNG------ 54

Query: 272 AAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGE 331
                   +++    TI  PK LL+NG+ VY+ VQKPGEFV TFP  YH  F+ GFN  E
Sbjct: 55  ----GEQPDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAE 110

Query: 332 AVNF 335
           AVNF
Sbjct: 111 AVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>gnl|CDD|190295 pfam02375, JmjN, jmjN domain Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 499
KOG0958 690 consensus DNA damage-responsive repressor GIS1/RPH 100.0
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 100.0
smart0054542 JmjN Small domain found in the jumonji family of t 99.79
PF0237534 JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro 99.64
smart0055857 JmjC A domain family that is part of the cupin met 99.38
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.36
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 98.97
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 96.94
KOG2131427 consensus Uncharacterized conserved protein, conta 96.74
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 93.77
KOG1356889 consensus Putative transcription factor 5qNCA, con 92.73
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 82.54
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-78  Score=646.51  Aligned_cols=307  Identities=32%  Similarity=0.564  Sum_probs=263.1

Q ss_pred             cCCCCCCCeeeCChhhhcCHHHHHHhhcc-ccccCCeeEEcCCCCccccchhhhcccccCceeeeeccCCCCCCccCCCC
Q 043353           29 THKISDCPAYYPTLQEFDDPFIYLQKIAP-EASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDT  107 (499)
Q Consensus        29 ~~~~~~~Pvf~PT~eEF~dp~~YI~~i~~-~a~~~GI~KIVPP~~w~~p~~~~l~~~~~~~~f~tr~Q~i~~~~~~~~~~  107 (499)
                      +...+++||||||||||+||.+||++|++ +|+++||+|||||++|++....   .+.+++++...+|++-     .+..
T Consensus         9 i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~---~di~di~I~~PiqQ~v-----~g~~   80 (690)
T KOG0958|consen    9 INPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMY---DDIDDIKIPAPIQQVV-----TGQG   80 (690)
T ss_pred             cCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCccccc---CchhheecChhHHHHh-----hccC
Confidence            35577999999999999999999999987 5667999999999999987532   2456788887776542     2233


Q ss_pred             cee---eec-CcccCHHHHHHHHHHHHHhhCCCCC-CCChhHHHHHhhhhccCCCccceeecccCCCCCCCCCCCCCcCC
Q 043353          108 GVF---FSG-ERKHTYDTFESEAIKMLKRQSPRLG-DLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGK  182 (499)
Q Consensus       108 ~~~---~~~-~~~~tl~~f~~~A~~~~~~~~~~~~-~~~~~~vE~efW~~v~~~~~~~v~YgaD~~gS~f~~~~~~~~~~  182 (499)
                      |.|   +++ .+.|++.+|++||+.   .+|++++ ...-+|+|++|||.+++.   .+.||||+.||+|+.+      .
T Consensus        81 G~F~~~Ni~~~kam~v~q~r~lAns---~~y~tpr~~~d~~dle~kYWKnltf~---~PiYGaD~~gSi~~~~------~  148 (690)
T KOG0958|consen   81 GLFTQYNIQDKKAMTVRQFRDLANS---DKYCTPRGSQDFEDLEQKYWKNLTFD---SPIYGADINGSIYDED------L  148 (690)
T ss_pred             ceEEEeehhhccccChhhhhhhhhh---cccCCCcccccHHHHHHHHHhcccCC---CCcccccCCCccCccc------c
Confidence            555   334 789999999999986   7788877 788899999999999985   6799999999999854      6


Q ss_pred             CCcccCCCCCCCCcccccccCCCCCCccceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHh
Q 043353          183 CKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARN  262 (499)
Q Consensus       183 ~~WNL~nlp~~~~slL~~~~~~i~Gv~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~  262 (499)
                      ..||+++|+...+-  ...+..|.|||||+||+|||.++|+||+||++||||||+|||+||+||+||+++.++||+++.+
T Consensus       149 ~~WNi~~L~tild~--~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~  226 (690)
T KOG0958|consen  149 DEWNIARLDTILDL--EECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASE  226 (690)
T ss_pred             cccccccccchhch--hhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHh
Confidence            79999999863321  4778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhhhcCCCChhhhhcccccccChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeeccccccccc
Q 043353          263 QVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFP  342 (499)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~  342 (499)
                      .++..       -.+|++||+|++++++|.+|+++|||+++++|++||||||||++||+|||+||||+|++|||++.|++
T Consensus       227 ~fp~~-------~~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~  299 (690)
T KOG0958|consen  227 LFPDS-------SQGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWID  299 (690)
T ss_pred             hCCcc-------ccCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhh
Confidence            87531       24699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhcCCCCCcCHHHH
Q 043353          343 FGEEAGKRYARLHKMVILPYQEL  365 (499)
Q Consensus       343 ~g~~a~~~y~~~~~~~~~s~~~L  365 (499)
                      +|+.|...-. .+..--|+|+.+
T Consensus       300 YgK~a~~C~C-~~d~vkism~~f  321 (690)
T KOG0958|consen  300 YGKQALLCSC-RSDSVKISMDPF  321 (690)
T ss_pred             hccccccccc-ccceeeeechhh
Confidence            9999985422 122223555554

>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00545 JmjN Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 1e-33
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 1e-33
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 1e-33
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 2e-33
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 3e-33
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 5e-32
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 5e-32
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 6e-32
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 6e-32
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 6e-32
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 2e-30
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 2e-30
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 45/323 (13%)
Query: 38  YYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVK----------ASVSAADVLKKEIK 86
           ++PT +EF+D   Y+  +  + A + G+ KII P +          + +  A  L++   
Sbjct: 21  FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQQVAS 80
Query: 87  GFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVE 146
           G   G + Q  +  K           GE +H  ++         K Q+P   +     +E
Sbjct: 81  G-RAGVFTQYHKKKK-------AMTVGEYRHLANS--------KKYQTPPHQNFED--LE 122
Query: 147 KKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIP 206
           +K+W    +    +  YG +I GS F  D N +    +W+L  L  +   + +    +I 
Sbjct: 123 RKYWKNRIYN---SPIYGADISGSLF--DENTK----QWNLGHLGTIQDLLEKECGVVIE 173
Query: 207 GITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYS 266
           G+  P LY GM  + FAWH ED  L+SINY H G PKTWY VP  H  + E++AR     
Sbjct: 174 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARE---- 229
Query: 267 RDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNG 326
              L      G    +  K  +  P +L +NG+   +  Q+ GEF++TFP  YHAGF++G
Sbjct: 230 ---LFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHG 286
Query: 327 FNCGEAVNFAIRDWFPFGEEAGK 349
           FNC EA+NFA   W  +G+ A +
Sbjct: 287 FNCAEAINFATPRWIDYGKMASQ 309
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
2ox0_A381 JMJC domain-containing histone demethylation PROT; 6e-71
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 5e-66
3opt_A373 DNA damage-responsive transcriptional repressor R; 8e-64
3dxt_A354 JMJC domain-containing histone demethylation PROT; 3e-63
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-61
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 7e-53
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
 Score =  229 bits (585), Expect = 6e-71
 Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 26/360 (7%)

Query: 14  SKQESYKFKFSDVDWTHKISDCPAYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVK 72
           ++   ++   S+ +  +  +    +YPT++EF +   Y+  I  + A + G+ K++ P +
Sbjct: 15  TENLYFQSMASESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKE 74

Query: 73  ASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKR 132
                    K      +      P  + +     +G+F     +    T           
Sbjct: 75  W--------KPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSD 126

Query: 133 QSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRG 192
           +           +E+K+W  +T        YG ++ G+ +    ++      W++  LR 
Sbjct: 127 KYCTPRYSEFEELERKYWKNLTFN---PPIYGADVNGTLYEKHVDE------WNIGRLRT 177

Query: 193 LPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHH 252
           +   + +     I G+  P LY GM  + FAWH ED  L+SINY H G PK+WY VP  H
Sbjct: 178 ILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEH 237

Query: 253 ALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFV 312
             + E++A+                    +  K T+  P +L   G+   K  Q+ GEF+
Sbjct: 238 GKRLERLAKGFFPGS-------AQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFM 290

Query: 313 ITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQELLFKEVSE 372
           ITFP  YHAGF++GFNC E+ NFA R W  +G++A         MV +     + K   E
Sbjct: 291 ITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCS-CRKDMVKISMDVFVRKFQPE 349
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
3dxt_A354 JMJC domain-containing histone demethylation PROT; 100.0
2ox0_A381 JMJC domain-containing histone demethylation PROT; 100.0
3opt_A373 DNA damage-responsive transcriptional repressor R; 100.0
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 100.0
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 100.0
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 100.0
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 97.96
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 97.96
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 97.94
3kv9_A397 JMJC domain-containing histone demethylation prote 97.87
3kv5_D488 JMJC domain-containing histone demethylation prote 97.86
2ypd_A392 Probable JMJC domain-containing histone demethyla 97.77
2yu1_A451 JMJC domain-containing histone demethylation PROT; 97.71
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 97.52
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 97.39
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 97.28
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 96.46
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 95.91
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 85.85
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
Probab=100.00  E-value=7.6e-90  Score=700.99  Aligned_cols=312  Identities=30%  Similarity=0.523  Sum_probs=274.0

Q ss_pred             CCCCCCCeeeCChhhhcCHHHHHHhhcc-ccccCCeeEEcCCCCccccchhhhcccccCceeeeeccCCCCCCccCCCCc
Q 043353           30 HKISDCPAYYPTLQEFDDPFIYLQKIAP-EASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDTG  108 (499)
Q Consensus        30 ~~~~~~Pvf~PT~eEF~dp~~YI~~i~~-~a~~~GI~KIVPP~~w~~p~~~~l~~~~~~~~f~tr~Q~i~~~~~~~~~~~  108 (499)
                      ....++||||||+|||+||.+||++|++ +|+++||||||||++|+++...   .+.+++.+.+++|++.     .+..|
T Consensus        13 ~~~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~~---~~~~~~~i~~pi~q~~-----~g~~G   84 (354)
T 3dxt_A           13 NPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETY---DNISEILIATPLQQVA-----SGRAG   84 (354)
T ss_dssp             CTTCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSCS---TTCTTCEESSCEEEEE-----EEETT
T ss_pred             CCCCCcceecCCHHHHhCHHHHHHHHHhccccccCcccccCcccccCcccc---cchhcccccCCceeee-----cCCCc
Confidence            3456789999999999999999999986 5789999999999999998642   3456788888887653     23334


Q ss_pred             e---eeecCcccCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHhhhhccCCCccceeecccCCCCCCCCCCCCCcCCCCc
Q 043353          109 V---FFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKW  185 (499)
Q Consensus       109 ~---~~~~~~~~tl~~f~~~A~~~~~~~~~~~~~~~~~~vE~efW~~v~~~~~~~v~YgaD~~gS~f~~~~~~~~~~~~W  185 (499)
                      +   ++++++.||+.+|+++|+.   .+|+.+...+.++||++|||.+..+   +|+||||++||+|+.+      .++|
T Consensus        85 ~~~~~~~~~k~~t~~~f~~~a~~---~~~~~p~~~~~~~lE~~fW~~~~~~---~p~YgaD~~gS~F~~~------~~~W  152 (354)
T 3dxt_A           85 VFTQYHKKKKAMTVGEYRHLANS---KKYQTPPHQNFEDLERKYWKNRIYN---SPIYGADISGSLFDEN------TKQW  152 (354)
T ss_dssp             EEEEEEEECCCEEHHHHHHHHTS---TTTSCCCCSSHHHHHHHHHHHGGGC---CCEEEEEEECCCSCTT------CCSS
T ss_pred             eEEEeeeccCccCHHHHHHHHhh---hhccCCCCCCHHHHHHHHhhhcccC---CceeeecCCCcccCCC------cchh
Confidence            4   4678899999999999984   5677777888999999999999874   6899999999999863      5799


Q ss_pred             ccCCCCCCCCcccccccCCCCCCccceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhcc
Q 043353          186 HLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVY  265 (499)
Q Consensus       186 NL~nlp~~~~slL~~~~~~i~Gv~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~  265 (499)
                      ||+|||.+.++||++++.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.++
T Consensus       153 NL~~L~~~~~~Ll~~~~~~I~GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p  232 (354)
T 3dxt_A          153 NLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFP  232 (354)
T ss_dssp             CTTSSCCHHHHHHHHHCCCCCCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSH
T ss_pred             hhhhccchhHHHHhhcCCCCCCccceeeeeccccCCCcceecCCcceEEEEEecCCceEEEEeCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             chhhhhhcCCCChhhhhcccccccChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecccccccccchH
Q 043353          266 SRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGE  345 (499)
Q Consensus       266 ~~~l~~~~~~~~~~~~l~~~~~~~~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~~g~  345 (499)
                        +.+     ..|++||+|++++++|+.|+++||||++++|+|||||||||||||+|||+||||+||||||+++|+++|+
T Consensus       233 --~~~-----~~c~~fL~h~~~lisP~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~  305 (354)
T 3dxt_A          233 --GSS-----RGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGK  305 (354)
T ss_dssp             --HHH-----HHCTTGGGGCCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHH
T ss_pred             --hhh-----hhcHHHHhcCcccCCHHHHHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHhhh
Confidence              333     2368999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCHHHHHHHH
Q 043353          346 EAGKRYARLHKMVILPYQELLFKE  369 (499)
Q Consensus       346 ~a~~~y~~~~~~~~~s~~~Ll~~~  369 (499)
                      .|.+..+... ...|+||.++..+
T Consensus       306 ~A~~C~C~~~-~v~i~~d~~~~~~  328 (354)
T 3dxt_A          306 MASQCSCGEA-RVTFSMDAFVRIL  328 (354)
T ss_dssp             HCCCCCSSSC-CCCHHHHHHHHHH
T ss_pred             hcccccccCc-cceecHHHHHHhh
Confidence            9976544433 3458888776543
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 97.33
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 97.06
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.33  E-value=0.00023  Score=68.04  Aligned_cols=123  Identities=12%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             cceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhccccccc
Q 043353          210 DPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIF  289 (499)
Q Consensus       210 ~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  289 (499)
                      ...+++|..++.+.+|...++  .++.+-.| .|.|+..|+.+...+       .+..+.  ... ...+.-+.....- 
T Consensus       123 ~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~-------~~~~~~--~~~-~~~~~~~~~~~~~-  188 (319)
T d1vrba1         123 KAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP-------MQHYDL--SEA-PYYPDDLQSYWKG-  188 (319)
T ss_dssp             EEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC-------SSCEEC--C-----CCHHHHHHCCS-
T ss_pred             eeEEEecCCCCCCccccCCCc--eeEEeecc-eEEEEEeCCcccccc-------ccCccc--ccC-ccccccccccchh-
Confidence            356888999999999998764  34555566 799999999764321       000000  000 0000000000000 


Q ss_pred             ChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecccccccccchHHHH
Q 043353          290 PPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAG  348 (499)
Q Consensus       290 ~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~~g~~a~  348 (499)
                        ......+.+.+.++++|||.+++-+|-+|.+.|.|-+++-++||..++|.++-..++
T Consensus       189 --~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~~  245 (319)
T d1vrba1         189 --DPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAAL  245 (319)
T ss_dssp             --CCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHHH
T ss_pred             --hchhhhcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHHHHH
Confidence              011234568899999999999999999999999999999999999999998754443
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure