Citrus Sinensis ID: 043362
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CAY1 | 623 | Putative pentatricopeptid | yes | no | 0.996 | 0.825 | 0.658 | 0.0 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.961 | 0.626 | 0.465 | 1e-135 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.996 | 0.779 | 0.440 | 1e-127 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.972 | 0.620 | 0.434 | 1e-119 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.970 | 0.700 | 0.418 | 1e-119 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.972 | 0.609 | 0.406 | 1e-117 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.970 | 0.721 | 0.403 | 1e-116 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.968 | 0.561 | 0.418 | 1e-115 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.972 | 0.590 | 0.423 | 1e-115 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.968 | 0.640 | 0.399 | 1e-115 |
| >sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/516 (65%), Positives = 419/516 (81%), Gaps = 2/516 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ +S+ L+VCYNALISGY NS V++A +F +M+E GV ++SVTML L+P+C P
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVP 169
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
YLWLG H CVK GLD + +V N +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 170 EYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGY+QNGLA VLELY +MKS GVCPD T V VLSSCAHLGA +G EV + +++NGF
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
N F++NA I+MYARCGNL KARA+FD MP K++VSWTA+IG YG+HG GE+ + LFD+M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+K GIRPDG FV VLSACSH+GLTDKGLE F MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L+EA+E IESM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EP N GYYVL+SNI
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS+++N +GI R+R+MMRER +K PGYSYVE KGRVHLF+ GDR+H QT E++RMLD+L
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
E V E G D+ EE + T HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 530 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 587
Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+F+K VSKIVDRQF+VRDA+RFH+FK G CSCKDYW
Sbjct: 588 VFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/513 (46%), Positives = 322/513 (62%), Gaps = 17/513 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YNA+I GY N ++SLF ++ G + S T++ L+P+ G+L L H
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGY 344
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
C+K SV L T+Y K ++ RKLFD+ PEK L +WNAMISGY QNGL
Sbjct: 345 CLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
+ L+REM+ P+ VT +LS+CA LGA S+G V +++ F S+ +++ ALI M
Sbjct: 405 ISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG++ +AR +FD M +K V+W +I GYG+HG G+ A+ +F EML SGI P F
Sbjct: 465 YAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTF 524
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ VL ACSHAGL +G E F M ++YG +P +HY CMVD+LGRAG L AL+ IE+M
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMS 584
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
+EP +VW LLGAC+IHK+ LA K+ +L+P N GY+VLLSNI+S RN
Sbjct: 585 IEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAAT 644
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR ++R+L K PGY+ +E+ H+F GD++H Q EIY L+KLE ++E
Sbjct: 645 VRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMRE-----A 699
Query: 433 SDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
Q +E L+D E VHSE+LAIAFG+I T PGTEI ++KNLR+C DCH
Sbjct: 700 GYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVT 759
Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KL+SKI +R +VRDA RFHHFK G CSC DYW
Sbjct: 760 KLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/529 (44%), Positives = 334/529 (63%), Gaps = 15/529 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCLL 54
VFDE K V + ++I GY LN +AVSLF + + + ++S+ ++ ++
Sbjct: 133 VFDEIPKRN--IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190
Query: 55 PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKG 112
C L H +K G D SVGN L+ Y K G V RK+FDQ+ +K
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250
Query: 113 LITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
+++N+++S YAQ+G++ E++R + K+ V +A+T VL + +H GA +G +
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310
Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
Q+ G + + ++I+MY +CG ++ AR FD M K V SWTA+I GYG+HGH
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370
Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
A++LF M+ SG+RP+ FVSVL+ACSHAGL +G +F MK ++G++PG EHY CM
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430
Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
VDLLGRAG L +A +LI+ M ++PD +W +LL AC+IHKNVELAE++ ++ +L+ N
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490
Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
GYY+LLS+IY++A + RVRM+M+ R L K PG+S +EL G VH+F++GD H Q
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550
Query: 412 EIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
+IY L +L + E + + + EE VHSEKLAIAFGI+NT PG+ +
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTV 610
Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
V+KNLR+C DCH IKL+SKIVDR+F+VRDA RFHHFK G CSC DYW
Sbjct: 611 NVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/509 (43%), Positives = 315/509 (61%), Gaps = 7/509 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N++I YV N EA+ +F KM ++GV+ V+++ L C D G L G H +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
V+ GLD + SV N L++MY KC VD +F ++ + L++WNAMI G+AQNG
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L + +M+S V PD T+V V+++ A L + + + N F+ AL++M
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG + AR IFD M + V +W A+I GYG HG G+ A++LF+EM K I+P+G F
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+SV+SACSH+GL + GL+ FY MK Y ++ +HY MVDLLGRAG+LNEA + I M
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
V+P V+GA+LGAC+IHKNV AE A ++ +L P + GY+VLL+NIY A + + +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQ 662
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR+ M + L+K PG S VE+K VH F G H + +IY L+KL ++E
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD 722
Query: 433 SD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
++ + + +E L T HSEKLAI+FG++NT+ GT I V KNLR+C DCH K +S
Sbjct: 723 TNLVLGVENDVKEQLLST--HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYIS 780
Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+ R+ +VRD RFHHFK+G CSC DYW
Sbjct: 781 LVTGREIVVRDMQRFHHFKNGACSCGDYW 809
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/511 (41%), Positives = 312/511 (61%), Gaps = 10/511 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YN +I+GY + + +A+ + +M ++ +S T+ +LPI + + G H
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
++ G+D D +G+ L+ MY K ++ ++F ++ + I+WN++++GY QNG
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L L+R+M + V P AV F V+ +CAHL +G ++ + GFGSN F+ +AL++M
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y++CGN+K AR IFD M VSWTAII G+ +HGHG AV LF+EM + G++P+ AF
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 447
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
V+VL+ACSH GL D+ YF M YGL EHY + DLLGRAG+L EA I M
Sbjct: 448 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMC 507
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
VEP G+VW LL +C +HKN+ELAE K+ ++ N G YVL+ N+Y+ + +
Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAK 567
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------ENLVQE 426
+R+ MR++ L+K P S++E+K + H F+ GDR+H +I L + E V +
Sbjct: 568 LRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVAD 627
Query: 427 HDGTKRS-DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
G D+++ E L HSE+LA+AFGIINT PGT I V KN+RIC DCH+ IK
Sbjct: 628 TSGVLHDVDEEHKRELLFG---HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKF 684
Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+SKI +R+ IVRD +RFHHF G CSC DYW
Sbjct: 685 ISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/512 (40%), Positives = 316/512 (61%), Gaps = 10/512 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ +N++I Y LN A+SLF +MR ++ + +T++ L I G +
Sbjct: 314 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373
Query: 73 CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
++ G L D ++GN ++ MY K G VD R +F+ +P +I+WN +ISGYAQNG A+
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433
Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
+E+Y M+ G + + T+V VL +C+ GA G+++ ++ NG + F+ +L
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
+MY +CG L+ A ++F +PR V W +I +G HGHGE AV LF EML G++PD
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
FV++LSACSH+GL D+G F M+ YG+ P +HY CMVD+ GRAGQL AL+ I+S
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
M ++PD ++WGALL AC++H NV+L ++A + ++EP + GY+VLLSN+Y+ A +G+
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE------NLV 424
+R + + L+K PG+S +E+ +V +F G++ H E+YR L L+ V
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733
Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
+H + + + +EH+ HSE+LAIAF +I T T I + KNLR+CGDCH K
Sbjct: 734 PDHRFVLQDVEDDEKEHI--LMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTK 791
Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+SKI +R+ IVRD+ RFHHFK+G CSC DYW
Sbjct: 792 FISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/510 (40%), Positives = 321/510 (62%), Gaps = 9/510 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V + A++S Y N EA+ +F +MR+ V+ + V ++ +L L G H
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
VK GL+++ + L TMY KCG V + LFD++ LI WNAMISGYA+NG A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
++++ EM + V PD ++ +S+CA +G+ + + + + + + F+++ALI+M
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
+A+CG+++ AR +FD + VV W+A+I GYG+HG A+ L+ M + G+ P+ F
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ +L AC+H+G+ +G +F M + + + P +HY C++DLLGRAG L++A E+I+ M
Sbjct: 428 LGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP 486
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
V+P VWGALL ACK H++VEL E A ++ ++P NTG+YV LSN+Y+ AR D +
Sbjct: 487 VQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAE 546
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR+ M+E+ L KD G S+VE++GR+ F VGD++H + EI R ++ +E+ ++E G
Sbjct: 547 VRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKE--GGFV 604
Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
+++ S LND E HSE++AIA+G+I+T GT + + KNLR C +CH KL+
Sbjct: 605 ANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLI 664
Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
SK+VDR+ +VRD RFHHFK G CSC DYW
Sbjct: 665 SKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/521 (41%), Positives = 319/521 (61%), Gaps = 21/521 (4%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
+NA+I+GY N EA+ LF M E G+ NS TM ++P CV G H
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431
Query: 74 VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
VK GLD D V N LM MY + G +D ++F ++ ++ L+TWN MI+GY + L
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 491
Query: 134 ELYREMKSL-----------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
L +M++L + P+++T + +L SCA L A + G E+ N ++
Sbjct: 492 LLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 551
Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
+ +AL++MYA+CG L+ +R +FD +P+K V++W II YG+HG+G+ A+ L M+
Sbjct: 552 VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMV 611
Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
G++P+ F+SV +ACSH+G+ D+GL FY MK YG++P +HY C+VDLLGRAG++
Sbjct: 612 QGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK 671
Query: 303 EALELIESMLVEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
EA +L+ M + + A W +LLGA +IH N+E+ E+A +I+LEP +YVLL+NIY
Sbjct: 672 EAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 731
Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
S A D VR M+E+ ++K+PG S++E VH F+ GD +H Q+ ++ L+ L
Sbjct: 732 SSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLW 791
Query: 422 NLVQEHDGTKRSD--QKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
+++ + N EE ++ E+ HSEKLAIAFGI+NTSPGT I V KNLR+
Sbjct: 792 ERMRKEGYVPDTSCVLHNVEE--DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRV 849
Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
C DCHL K +SKIVDR+ I+RD RFH FK+G CSC DYW
Sbjct: 850 CNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/522 (42%), Positives = 312/522 (59%), Gaps = 20/522 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V ++A ISGY L EA+ + +M G++ N VT++ +L C G L G HC
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390
Query: 73 CVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGY 123
+K+ +DL + V N L+ MY KC VD R +FD + E+ ++TW MI GY
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 124 AQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
+Q+G A LEL EM + P+A T L +CA L A +G ++ N +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
P F++N LI+MYA+CG++ AR +FD M K V+WT+++ GYG+HG+GE A+ +FDEM
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+ G + DG + VL ACSH+G+ D+G+EYF MK +G+ PGPEHY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGR 630
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
LN AL LIE M +EP VW A L C+IH VEL E A K+ +L + G Y LLSN+
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNL 690
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
Y+ A + R+R +MR + +KK PG S+VE F VGD+ H EIY++L L
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL--L 748
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLR 474
+++ + D + + ++D E HSEKLA+A+GI+ T G I + KNLR
Sbjct: 749 DHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLR 808
Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+CGDCH +S+I+D I+RD++RFHHFK+G CSCK YW
Sbjct: 809 VCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/526 (39%), Positives = 316/526 (60%), Gaps = 26/526 (4%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDES T + A++SGY+ N +V EA LF KM E+ N V+ +L V
Sbjct: 272 LFDESPVQDVFT--WTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQG 325
Query: 61 GYLWLG------MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
+ + M C + S N ++T Y +CG + + LFD++P++ +
Sbjct: 326 ERMEMAKELFDVMPCRNV----------STWNTMITGYAQCGKISEAKNLFDKMPKRDPV 375
Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
+W AMI+GY+Q+G + L L+ +M+ G + +F LS+CA + A +G ++ ++
Sbjct: 376 SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 435
Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
G+ + F+ NAL+ MY +CG++++A +F M K +VSW +I GY HG GEVA+
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495
Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
+ F+ M + G++PD V+VLSACSH GL DKG +YFY M YG+ P +HY CMVDL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555
Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
LGRAG L +A L+++M EPD A+WG LLGA ++H N ELAE A K+ +EP N+G Y
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615
Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
VLLSN+Y+ + + ++R+ MR++ +KK PGYS++E++ + H F VGD H + EI+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675
Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
L++L+ +++ ++ EE HSE+LA+A+GI+ S G I V+
Sbjct: 676 AFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVI 735
Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KNLR+C DCH IK +++I R I+RD RFHHFK G CSC DYW
Sbjct: 736 KNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| 224091973 | 582 | predicted protein [Populus trichocarpa] | 0.976 | 0.865 | 0.740 | 0.0 | |
| 359482011 | 629 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.820 | 0.709 | 0.0 | |
| 449451271 | 623 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.828 | 0.694 | 0.0 | |
| 449482345 | 614 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.840 | 0.691 | 0.0 | |
| 15229764 | 623 | pentatricopeptide repeat-containing prot | 0.996 | 0.825 | 0.658 | 0.0 | |
| 297829702 | 620 | pentatricopeptide repeat-containing prot | 0.996 | 0.829 | 0.658 | 0.0 | |
| 356537109 | 630 | PREDICTED: putative pentatricopeptide re | 0.994 | 0.814 | 0.655 | 0.0 | |
| 242054799 | 640 | hypothetical protein SORBIDRAFT_03g03814 | 0.986 | 0.795 | 0.530 | 1e-158 | |
| 414879943 | 1056 | TPA: hypothetical protein ZEAMMB73_80434 | 0.986 | 0.482 | 0.524 | 1e-152 | |
| 357131197 | 648 | PREDICTED: putative pentatricopeptide re | 0.980 | 0.780 | 0.536 | 1e-149 |
| >gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa] gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/516 (74%), Positives = 445/516 (86%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE+ +S LTVCYN+L+SGY LNS V + V LF +MRE GVEIN VTML L+ C P
Sbjct: 67 LFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIP 126
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G L LGMC H CVKFGLD+D SVGNCL+TMYVK G +D GRKLFD++P KGLITWNAMI
Sbjct: 127 GNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMI 186
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
+GYAQNGLA +VLELY+EM+S G CPD +T VGVLSSCAHLGA SVG EVE++++ GF
Sbjct: 187 NGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFS 246
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
SNPFLNNAL+NMYARCGNLKKAR IFDGMP K+VVSWTAIIGGYG+HG GEVAV LFDEM
Sbjct: 247 SNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEM 306
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
++ GI+PDGTAFVSVLSACSHAGLT+KGL+YF M+ KYGL+PG EHY+CMVDLLGRAG+
Sbjct: 307 IRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGR 366
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
LNEA ELIESM V DGA+WGALLGACKIH+NVELAELAF +VI+LEP NTGYYVLLSN+
Sbjct: 367 LNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNV 426
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
Y+EA NL+GI+RVRM+MR+R+LKKDPG SYVE KGRVHLF GDRNH QT EIY+ L++L
Sbjct: 427 YTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNEL 486
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
ENLV++ DG K++D + EE+LN VHSEKLA+AF ++NT TEI+++KNLRICGDCH
Sbjct: 487 ENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCH 546
Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
LFIKLVSKIVDRQF+VRDATRFHHFK+GFCSCK+YW
Sbjct: 547 LFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/517 (70%), Positives = 431/517 (83%), Gaps = 1/517 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE+ S +L VCYNALI+GY LNS S+AV LF +MR++GV +N+VTML L+P+C P
Sbjct: 113 VFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGP 172
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
+L G H V+FGLD D SVGNCL+TMYV+CGSVD+ RKLFD +PEKGLITWNAMI
Sbjct: 173 IHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMI 232
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGYAQNGLA HVL+LYR+M+ G+ PD VT VGVLSSCAHLGAH+ G EVEQ+I+ +GFG
Sbjct: 233 SGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG 292
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
NPFL NALINMYARCGNL KARAIFDGM K V+SWTAII GYG+HG GE+AVQLFDEM
Sbjct: 293 FNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM 352
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+ S PDG AFVSVLSACSHAGLT+KGL YF M+ YGLQPGPEHY+C+VDLLGRAG+
Sbjct: 353 ISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L EA +LI SM VEPDGAVWGALLGACKIH+NVELAELAF KVI+ EP N GYYVLLSNI
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNI 472
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
+SEA N++GI+RVR+MMRER+LKK+PG SYVE +GR+HLF+ GDR H Q EIY MLD L
Sbjct: 473 FSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGL 532
Query: 421 ENLVQEHDGTKRSDQKN-SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
E++++ G+ +DQ++ +EE + VHSEKLAIAFG+INT PGTEI V+KNLR+CGDC
Sbjct: 533 EDIIKRRGGSNDNDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDC 592
Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
HLF+KLVS+IVDRQ +VRDATRFHHFK+G CSCKDYW
Sbjct: 593 HLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/518 (69%), Positives = 429/518 (82%), Gaps = 2/518 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ S LTVCYNAL+SGYV NS SEAV LF +M E+GV +NSVT+L L+P CV P
Sbjct: 106 VFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSP 165
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
L LG HC +K+G D D SV NC +TMY+KCGSV+Y +KLFD++P KGLI+WNAM+
Sbjct: 166 INLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 225
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGYAQNGLAT+VLELYR M GV PD VT VGVLSSCA+LGA SVG EVE +IQA+GF
Sbjct: 226 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFT 285
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
SNPFLNNALINMYARCGNL KA+A+FDGMP +T+VSWTAIIGGYG+HGHGE+AVQLF EM
Sbjct: 286 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 345
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
++SGI PDGTAFV VLSACSHAGLTD+GLEYF MK Y L+PGPEHY+CMVDLLGRAG+
Sbjct: 346 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 405
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L EA LIESM ++PDGAVWGALLGACKIHKNVELAELAF +VI+LEP N GYYVLLSNI
Sbjct: 406 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNI 465
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS A N G++R+R+MM+E++LKKDPG SYVELKGRVH F+VGDRNH Q+ EIYR+L++L
Sbjct: 466 YSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 525
Query: 421 ENLVQEHDGTKRSD--QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
E ++ + G D ++++++ VHSEKLA+AFG++NT+ G E+V++KNLRIC D
Sbjct: 526 EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICED 585
Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
CHLF K+VSKIV RQ VRDATRFHHF++G CSCKDYW
Sbjct: 586 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/518 (69%), Positives = 429/518 (82%), Gaps = 2/518 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ S LTVCYNAL+SGYV NS S+AV LF +M E+GV +NSVT+L L+P CV P
Sbjct: 97 VFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSP 156
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
L LG HC +K+G D D SV NC +TMY+KCGSV+Y +KLFD++P KGLI+WNAM+
Sbjct: 157 INLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 216
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGYAQNGLAT+VLELYR M GV PD VT VGVLSSCA+LGA SVG EVE ++QA+GF
Sbjct: 217 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFT 276
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
SNPFLNNALINMYARCGNL KA+A+FDGMP +T+VSWTAIIGGYG+HGHGE+AVQLF EM
Sbjct: 277 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 336
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
++SGI PDGTAFV VLSACSHAGLTD+GLEYF MK Y L+PGPEHY+CMVDLLGRAG+
Sbjct: 337 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 396
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L EA LIESM ++PDGAVWGALLGACKIHKNVELAELAF +VI+LEP N GYYVLLSNI
Sbjct: 397 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNI 456
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS A N G++R+R+MM+E++LKKDPG SYVELKGRVH F+VGDRNH Q+ EIYR+L++L
Sbjct: 457 YSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 516
Query: 421 ENLVQEHDGTKRSD--QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
E ++ + G D ++++++ VHSEKLA+AFG++NT+ G E+V++KNLRIC D
Sbjct: 517 EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICED 576
Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
CHLF K+VSKIV RQ VRDATRFHHF++G CSCKDYW
Sbjct: 577 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g11460 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana] gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/516 (65%), Positives = 419/516 (81%), Gaps = 2/516 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ +S+ L+VCYNALISGY NS V++A +F +M+E GV ++SVTML L+P+C P
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVP 169
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
YLWLG H CVK GLD + +V N +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 170 EYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGY+QNGLA VLELY +MKS GVCPD T V VLSSCAHLGA +G EV + +++NGF
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
N F++NA I+MYARCGNL KARA+FD MP K++VSWTA+IG YG+HG GE+ + LFD+M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+K GIRPDG FV VLSACSH+GLTDKGLE F MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L+EA+E IESM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EP N GYYVL+SNI
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS+++N +GI R+R+MMRER +K PGYSYVE KGRVHLF+ GDR+H QT E++RMLD+L
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
E V E G D+ EE + T HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 530 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 587
Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+F+K VSKIVDRQF+VRDA+RFH+FK G CSCKDYW
Sbjct: 588 VFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/516 (65%), Positives = 417/516 (80%), Gaps = 2/516 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ S+ L VCYNALISGY NS VS+A +F +M+E GV ++SVT+L L+P+C P
Sbjct: 107 VFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVP 166
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
YLWLG H CVK G + +V N +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 167 EYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVI 226
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGY+QNGLA VLEL+ +MKS GVCPD T V VLSSCAHLGA +G EV + ++ANGF
Sbjct: 227 SGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFA 286
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
N FL+NALI+MYARCGNL KARA+FD MP K++VSWTA+IG YG+HG GE + LFD+M
Sbjct: 287 PNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDM 346
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+K GIRPDG FV VLSACSH+GLTDKGLE F MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 347 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 406
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L+EA+E I+SM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EPMN GYYVL+SNI
Sbjct: 407 LDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNI 466
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS+++N +GI R+R+MMRER +K PGYSYVE KG+VHLF+ GDR+H QT E++RMLD+L
Sbjct: 467 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDEL 526
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
E V E G D+ EE + T HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 527 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 584
Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+FIKLVSKIVDR+F+VRDA+RFH+FK G CSCKDYW
Sbjct: 585 VFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/523 (65%), Positives = 411/523 (78%), Gaps = 10/523 (1%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-------GVEINSVTMLCL 53
VFDE + T+CYNA+ISGY NS AV LF KMR + V +N+VT+L L
Sbjct: 111 VFDEM---PNPTICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSL 167
Query: 54 LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
+ C +L +G+C H CV+FG D +V N L+TMYVKCG V+ RK+FD++ + L
Sbjct: 168 VSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDL 227
Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
ITWNAMISGYAQNG A VLE+Y EMK GV DAVT +GV+S+CA+LGA +G EVE++
Sbjct: 228 ITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVERE 287
Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
I+ GFG NPFL NAL+NMYARCGNL +AR +FD K+VVSWTAIIGGYGIHGHGEVA
Sbjct: 288 IERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVA 347
Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
++LFDEM++S +RPD T FVSVLSACSHAGLTD+GLEYF M+ KYGLQPGPEHY+C+VD
Sbjct: 348 LELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVD 407
Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
LLGRAG+L EA+ LI+SM V+PDGAVWGALLGACKIHKN E+AELAF V++LEP N GY
Sbjct: 408 LLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGY 467
Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI 413
YVLLSNIY++A NL+G+ RVR+MMRER+L+KDPGYSYVE KG+++LF GD +H QT +I
Sbjct: 468 YVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQI 527
Query: 414 YRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
YRMLD+LE+LV+E Q SEE L T VHSEKLAIAF ++NT GTEI VMKNL
Sbjct: 528 YRMLDELESLVKEVHPPNEKCQGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNL 587
Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
R+C DCHLFIKLVSKIV+RQFIVRDATRFHHF+ G CSCKDYW
Sbjct: 588 RVCVDCHLFIKLVSKIVNRQFIVRDATRFHHFRDGICSCKDYW 630
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor] gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/528 (53%), Positives = 368/528 (69%), Gaps = 19/528 (3%)
Query: 4 ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
ES T L +N++ISG L++L + +LF +MR V ++VT+L L+P L
Sbjct: 117 ESTPHTTLRTAFNSVISGCALHALPVASFALFRRMRAAAVGFDAVTLLALVPATP----L 172
Query: 64 WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVP--EKGLITWNAM 119
+ H + + GL + SV NCLM+ Y + G+ R++FD++P + L++WNA+
Sbjct: 173 SVVPQVHALAARVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAV 232
Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
+S +AQNGLA LELYR M+S GV PDAVT VGVLSS AHLGA VG +VE ++
Sbjct: 233 LSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQ 292
Query: 177 N--GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
GF +N L NALIN +ARCG+L +A+ +FD MPRK++VSWTA+I G+G+HG+G+VAV
Sbjct: 293 RIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAV 352
Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
LF+ M+ GIRPD A V++ SACSHAGL D+G YF M++ Y L+P EHYTCMVDL
Sbjct: 353 SLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDL 412
Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
LGRAG+L EA ELI SM + DGAVWGALLGACKIHKNV++ E AF +VI+LEP N GYY
Sbjct: 413 LGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDVGEEAFTRVIELEPKNVGYY 472
Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
VL+SNIY++ LD + RVR MMRER LKK+PG SYVE KGRVHLFM D +H Q IY
Sbjct: 473 VLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQARRIY 532
Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIV 468
++ +LE +V+E G + S+ ++ + +HSEKLA+AFG++NT G+EIV
Sbjct: 533 ELVIRLELMVKEKSGMRESEVAAAKGRMEKAAAQPLVGIHSEKLAVAFGLLNTEAGSEIV 592
Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
V+KNLR+CGDCH F+K+VS +R F+VRDA+RFH F G CSCKDYW
Sbjct: 593 VIKNLRVCGDCHSFLKVVSATTNRAFLVRDASRFHRFDGGVCSCKDYW 640
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/528 (52%), Positives = 359/528 (67%), Gaps = 19/528 (3%)
Query: 4 ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
ES T L +N+LISG +SL +LF +MR V ++VT+L L+P L
Sbjct: 533 ESTSHTTLRTAFNSLISGCARHSLPVACFALFRRMRAIAVRFDAVTLLALVPA----APL 588
Query: 64 WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVP--EKGLITWNAM 119
+ H + + GL + SV NCLM+ Y + G+ R++FD++P + L++WNA+
Sbjct: 589 SVVPQVHALAAQVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAV 648
Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-- 174
+S +AQNGLA L+LYR M+S GV PDAVT VGVLSS AHLGA VG + E +
Sbjct: 649 LSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQ 708
Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
+ GF +N L NALIN +ARCG+L +A+ +FD MP K++VSWTA+I G+G+HG+G VAV
Sbjct: 709 RLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAV 768
Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
LF+ M+ GI PD A V VLSACSHAGL D+G YF M++ Y L+P EHYTC+VDL
Sbjct: 769 SLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDL 828
Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
LGRAG+L EA ELI SM + DGAVWGALLGACKIHKNVE+ E AF +V++LEP N GYY
Sbjct: 829 LGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYY 888
Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
VL+SNIY++ LD + RVR +MR+R LKK+PG SYVE GRVHLFM D +H Q IY
Sbjct: 889 VLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIY 948
Query: 415 RMLDKLENLVQEHDGTKRS----DQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIV 468
++ +LE +V+E G + S + E+ V HSEKLA+AFG++NT G+EIV
Sbjct: 949 ELVTRLELMVKEKSGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIV 1008
Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
V+KNLR+CGDCH F+K VS +R F+VRDA+RFH F G CSCKDYW
Sbjct: 1009 VIKNLRVCGDCHSFLKAVSATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/526 (53%), Positives = 366/526 (69%), Gaps = 20/526 (3%)
Query: 5 SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
S L +N+LISG L++L + +LF +MR GV ++VT+L L+P P +
Sbjct: 129 STPPATLCTAFNSLISGCALHALPAACFALFRRMRVAGVRFDAVTLLTLVP-AAPPSVVP 187
Query: 65 LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISG 122
+ + GL + SV NCL+++Y + G+ R++FD++P + L++WNA++S
Sbjct: 188 QLHA---LAARAGLAAETSVANCLISVYARRGAA-LARQVFDEMPAASRDLVSWNAVLSA 243
Query: 123 YAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-- 177
++QNGLA L+LY M+ GV PDAVT V VLSSCAHLGA SVGL VE+ ++
Sbjct: 244 HSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLP 303
Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
GF +N L NALIN YARCG L +A+ +F+ MPRK++VSWTA+I GYG+HGHGEVA+ LF
Sbjct: 304 GFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLF 363
Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
M+ GIRPD A V +LSACSHAG+ D+G +YF M++ Y L+P EHYTCMVDLLGR
Sbjct: 364 QTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGR 423
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
AG+L EA ELI SM + DGAVWGALLGACKIHKNVE+ E AF VI++EP N GYYVL+
Sbjct: 424 AGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYYVLM 483
Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
+NIY++ LD ++RVR MMRER LKK+PG SYVE KGRVHLFM D +H Q IY ++
Sbjct: 484 ANIYTDTGQLDCVVRVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQAKRIYELV 543
Query: 418 DKLENLVQEH-DGT-KRSDQKNSEEHLNDTEV-----HSEKLAIAFGIINTSPGTEIVVM 470
KLE +V+E DGT + E H T V HSEKLA+AFG++NT G+EI V+
Sbjct: 544 LKLEQMVKEKTDGTVGIQGGRMIEGHSEKTAVPLIGFHSEKLAVAFGMLNTV-GSEIAVI 602
Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KNLR+CG+CH F+K VS I +R F+VRDA+RFH F+ G CSCKDYW
Sbjct: 603 KNLRVCGNCHSFLKTVSAIANRVFLVRDASRFHRFEDGACSCKDYW 648
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.996 | 0.825 | 0.631 | 3.5e-178 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.968 | 0.631 | 0.447 | 7.3e-114 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.996 | 0.779 | 0.415 | 2.5e-106 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.992 | 0.632 | 0.408 | 1.3e-102 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.976 | 0.645 | 0.386 | 3.2e-102 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.994 | 0.692 | 0.397 | 1.1e-101 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.972 | 0.609 | 0.392 | 6.2e-101 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.996 | 0.863 | 0.395 | 4.4e-100 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.988 | 0.6 | 0.409 | 7.1e-100 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.996 | 0.590 | 0.391 | 2.2e-98 |
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
Identities = 326/516 (63%), Positives = 401/516 (77%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ +S+ L+VCYNALISGY NS V++A +F +M+E GV ++SVTML L+P+C P
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVP 169
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
YLWLG H CVK GLD + +V N +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 170 EYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGY+QNGLA VLELY +MKS GVCPD T V VLSSCAHLGA +G EV + +++NGF
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFDEM 240
N F++NA I+MYARCGNL KARA+FD MP K++VSWTA E+ + LFD+M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+K GIRPDG FV VLSACSH+GLTDKGLE F MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L+EA+E IESM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EP N GYYVL+SNI
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469
Query: 361 YSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS+++N +GI +K PGYSYVE KGRVHLF+ GDR+H QT E++RMLD+L
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
E V E G D+ EE + T HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 530 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 587
Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+F+K VSKIVDRQF+VRDA+RFH+FK G CSCKDYW
Sbjct: 588 VFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 228/509 (44%), Positives = 308/509 (60%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YNA+I GY N ++SLF ++ G + S T++ L+P+ G+L L H
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGY 344
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
C+K SV L T+Y K ++ RKLFD+ PEK L +WNAMISGY QNGL
Sbjct: 345 CLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
+ L+REM+ P+ VT +LS+CA LGA S+G V +++ F S+ +++ ALI M
Sbjct: 405 ISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG++ +AR +FD M +K V+W + A+ +F EML SGI P F
Sbjct: 465 YAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTF 524
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ VL ACSHAGL +G E F M ++YG +P +HY CMVD+LGRAG L AL+ IE+M
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMS 584
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIXX 372
+EP +VW LLGAC+IHK+ LA K+ +L+P N GY+VLLSNI+S RN
Sbjct: 585 IEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAAT 644
Query: 373 XXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---HDG 429
L K PGY+ +E+ H+F GD++H Q EIY L+KLE ++E
Sbjct: 645 VRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPE 704
Query: 430 TKRS--DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
T+ + D + E L +VHSE+LAIAFG+I T PGTEI ++KNLR+C DCH KL+S
Sbjct: 705 TELALHDVEEEERELM-VKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLIS 763
Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KI +R +VRDA RFHHFK G CSC DYW
Sbjct: 764 KITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 220/529 (41%), Positives = 316/529 (59%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR------EQGVEINSVTMLCLL 54
VFDE K V + ++I GY LN +AVSLF + + + ++S+ ++ ++
Sbjct: 133 VFDEIPKRN--IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190
Query: 55 PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKG 112
C L H +K G D SVGN L+ Y K G V RK+FDQ+ +K
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250
Query: 113 LITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
+++N+++S YAQ+G++ E++R + K+ V +A+T VL + +H GA +G +
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310
Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXE 231
Q+ G + + ++I+MY +CG ++ AR FD M K V SWTA
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370
Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
A++LF M+ SG+RP+ FVSVL+ACSHAGL +G +F MK ++G++PG EHY CM
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430
Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
VDLLGRAG L +A +LI+ M ++PD +W +LL AC+IHKNVELAE++ ++ +L+ N
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490
Query: 352 GYYVLLSNIYSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
GYY+LLS+IY++A + L K PG+S +EL G VH+F++GD H Q
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550
Query: 412 EIYRMLDKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
+IY L +L + E + + EE VHSEKLAIAFGI+NT PG+ +
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTV 610
Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
V+KNLR+C DCH IKL+SKIVDR+F+VRDA RFHHFK G CSC DYW
Sbjct: 611 NVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 213/521 (40%), Positives = 306/521 (58%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FD ++ V +N++I YV N EA+ +F KM ++GV+ V+++ L C D
Sbjct: 293 LFDGMLERN--VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G L G H + V+ GLD + SV N L++MY KC VD +F ++ + L++WNAMI
Sbjct: 351 GDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMI 410
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
G+AQNG L + +M+S V PD T+V V+++ A L + + +
Sbjct: 411 LGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLD 470
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFDEM 240
N F+ AL++MYA+CG + AR IFD M + V +W A + A++LF+EM
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM 530
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
K I+P+G F+SV+SACSH+GL + GL+ FY MK Y ++ +HY MVDLLGRAG+
Sbjct: 531 QKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGR 590
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
LNEA + I M V+P V+GA+LGAC+IHKNV AE A ++ +L P + GY+VLL+NI
Sbjct: 591 LNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANI 650
Query: 361 YSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
Y A + + L+K PG S VE+K VH F G H + +IY L+KL
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKL 710
Query: 421 ENLVQEHDGTKRSD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
++E ++ + + +E L T HSEKLAI+FG++NT+ GT I V KNLR+
Sbjct: 711 ICHIKEAGYVPDTNLVLGVENDVKEQLLST--HSEKLAISFGLLNTTAGTTIHVRKNLRV 768
Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
C DCH K +S + R+ +VRD RFHHFK+G CSC DYW
Sbjct: 769 CADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 202/522 (38%), Positives = 302/522 (57%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDES T + A++SGY+ N +V EA LF KM E+ E++ ML
Sbjct: 272 LFDESPVQDVFT--WTAMVSGYIQNRMVEEARELFDKMPERN-EVSWNAMLA-------- 320
Query: 61 GYLWLGMCCHCICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
GY+ G F + + S N ++T Y +CG + + LFD++P++ ++W A
Sbjct: 321 GYVQ-GERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379
Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
MI+GY+Q+G + L L+ +M+ G + +F LS+CA + A +G ++ ++ G
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439
Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFD 238
+ + F+ NAL+ MY +CG++++A +F M K +VSW EVA++ F+
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFE 499
Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
M + G++PD V+VLSACSH GL DKG +YFY M YG+ P +HY CMVDLLGRA
Sbjct: 500 SMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRA 559
Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
G L +A L+++M EPD A+WG LLGA ++H N ELAE A K+ +EP N+G YVLLS
Sbjct: 560 GLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLS 619
Query: 359 NIYSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
N+Y+ + + +KK PGYS++E++ + H F VGD H + EI+ L+
Sbjct: 620 NLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLE 679
Query: 419 KLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
+L+ +++ ++ EE HSE+LA+A+GI+ S G I V+KNLR
Sbjct: 680 ELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLR 739
Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+C DCH IK +++I R I+RD RFHHFK G CSC DYW
Sbjct: 740 VCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 208/523 (39%), Positives = 300/523 (57%)
Query: 1 VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
+FDE +K V +NA+ISGY EA+ LF M + V + TM+ ++ C
Sbjct: 222 LFDEIPVKDV---VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
G + LG H G + + N L+ +Y KCG ++ LF+++P K +I+WN +
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QAN 177
I GY L L L++EM G P+ VT + +L +CAHLGA +G + I +
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLF 237
G + L +LI+MYA+CG+++ A +F+ + K++ SW A + + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
M K GI+PD FV +LSACSH+G+ D G F M Y + P EHY CM+DLLG
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
+G EA E+I M +EPDG +W +LL ACK+H NVEL E +IK+EP N G YVLL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578
Query: 358 SNIYSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
SNIY+ A + + +KK PG S +E+ VH F++GD+ H + EIY ML
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Query: 418 DKLENLVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNL 473
+++E L+++ + + + EE + + HSEKLAIAFG+I+T PGT++ ++KNL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698
Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
R+C +CH KL+SKI R+ I RD TRFHHF+ G CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 201/512 (39%), Positives = 305/512 (59%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ +N++I Y LN A+SLF +MR ++ + +T++ L I G +
Sbjct: 314 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373
Query: 73 CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
++ G L D ++GN ++ MY K G VD R +F+ +P +I+WN +ISGYAQNG A+
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433
Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
+E+Y M+ G + + T+V VL +C+ GA G+++ ++ NG + F+ +L
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFDEMLKSGIRPDGT 250
+MY +CG L+ A ++F +PR V W E AV LF EML G++PD
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
FV++LSACSH+GL D+G F M+ YG+ P +HY CMVD+ GRAGQL AL+ I+S
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
M ++PD ++WGALL AC++H NV+L ++A + ++EP + GY+VLLSN+Y+ A +G+
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 371 XXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE------NLV 424
L+K PG+S +E+ +V +F G++ H E+YR L L+ V
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733
Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
+H + + + +EH+ + HSE+LAIAF +I T T I + KNLR+CGDCH K
Sbjct: 734 PDHRFVLQDVEDDEKEHILMS--HSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTK 791
Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+SKI +R+ IVRD+ RFHHFK+G CSC DYW
Sbjct: 792 FISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 207/523 (39%), Positives = 311/523 (59%)
Query: 1 VFDESIKSTHLTVCYNALISGYV-LNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICV 58
VF + K ++ + +N LI GY + + +S A SL+ +MR G VE ++ T L+
Sbjct: 75 VFSKIEKPINVFI-WNTLIRGYAEIGNSIS-AFSLYREMRVSGLVEPDTHTYPFLIKAVT 132
Query: 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
+ LG H + ++ G V N L+ +Y CG V K+FD++PEK L+ WN+
Sbjct: 133 TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNS 192
Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
+I+G+A+NG L LY EM S G+ PD T V +LS+CA +GA ++G V + G
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 252
Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFD 238
N +N L+++YARCG +++A+ +FD M K VSWT+ + A++LF
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 312
Query: 239 EMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
M + G+ P FV +L ACSH G+ +G EYF M+ +Y ++P EH+ CMVDLL R
Sbjct: 313 YMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 372
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
AGQ+ +A E I+SM ++P+ +W LLGAC +H + +LAE A ++++LEP ++G YVLL
Sbjct: 373 AGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLL 432
Query: 358 SNIYSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
SN+Y+ + + +KK PG+S VE+ RVH F++GD++H Q+ IY L
Sbjct: 433 SNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKL 492
Query: 418 DKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
++ ++ + EE N HSEK+AIAF +I+T + I V+KNL
Sbjct: 493 KEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNL 552
Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
R+C DCHL IKLVSK+ +R+ +VRD +RFHHFK+G CSC+DYW
Sbjct: 553 RVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 218/532 (40%), Positives = 302/532 (56%)
Query: 3 DESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY 62
+E IK +T ++A ISGY L EA+ + +M G++ N VT++ +L C G
Sbjct: 323 EEKIKMDVVT--WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380
Query: 63 LWLGMCCHCICVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQV-P-EKGL 113
L G HC +K+ +DL + V N L+ MY KC VD R +FD + P E+ +
Sbjct: 381 LMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDV 440
Query: 114 ITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
+TW MI GY+Q+G A LEL EM + P+A T L +CA L A +G ++
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500
Query: 172 QQIQANGFGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXX 230
N + P F++N LI+MYA+CG++ AR +FD M K V+WT+
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560
Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
E A+ +FDEM + G + DG + VL ACSH+G+ D+G+EYF MK +G+ PGPEHY C
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620
Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
+VDLLGRAG+LN AL LIE M +EP VW A L C+IH VEL E A K+ +L +
Sbjct: 621 LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680
Query: 351 TGYYVLLSNIYSEARNLDGIXXXXXXXXXXXLKKDPGYSYVE-LKGRVHLFMVGDRNHHQ 409
G Y LLSN+Y+ A + +KK PG S+VE +KG F VGD+ H
Sbjct: 681 DGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPH 739
Query: 410 TVEIYR-MLDKLENLVQ----EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPG 464
EIY+ +LD ++ + G D + E+ E HSEKLA+A+GI+ T G
Sbjct: 740 AKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFE-HSEKLALAYGILTTPQG 798
Query: 465 TEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
I + KNLR+CGDCH +S+I+D I+RD++RFHHFK+G CSCK YW
Sbjct: 799 AAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
Identities = 204/521 (39%), Positives = 302/521 (57%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF E S V Y ++I+GY L EAV LF +M E+G+ + T+ +L C
Sbjct: 353 VFREM--SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
L G H + L D V N LM MY KCGS+ +F ++ K +I+WN +I
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 470
Query: 121 SGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
GY++N A L L+ + + PD T VL +CA L A G E+ I NG+
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFDE 239
S+ + N+L++MYA+CG L A +FD + K +VSWT + A+ LF++
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQ 590
Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
M ++GI D +FVS+L ACSH+GL D+G +F M+++ ++P EHY C+VD+L R G
Sbjct: 591 MRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 650
Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
L +A IE+M + PD +WGALL C+IH +V+LAE KV +LEP NTGYYVL++N
Sbjct: 651 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMAN 710
Query: 360 IYSEARNLDGIXXXXXXXXXXXLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
IY+EA + + L+K+PG S++E+KGRV++F+ GD ++ +T I L K
Sbjct: 711 IYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRK 770
Query: 420 LE-NLVQE-HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
+ +++E + + ++EE + + HSEKLA+A GII++ G I V KNLR+
Sbjct: 771 VRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRV 830
Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
CGDCH K +SK+ R+ ++RD+ RFH FK G CSC+ +W
Sbjct: 831 CGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9CAY1 | PP223_ARATH | No assigned EC number | 0.6589 | 0.9961 | 0.8250 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 516 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-153 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-135 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 457 bits (1178), Expect = e-153
Identities = 212/505 (41%), Positives = 305/505 (60%), Gaps = 5/505 (0%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V + A+ISGY N L +A+ + M + V + +T+ +L C G L +G+ H +
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+ GL V N L+ MY KC +D ++F +PEK +I+W ++I+G N
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L +R+M L + P++VT + LS+CA +GA G E+ + G G + FL NAL+++
Sbjct: 475 LIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y RCG + A F+ K VVSW ++ GY HG G +AV+LF+ M++SG+ PD F
Sbjct: 534 YVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+S+L ACS +G+ +GLEYF+ M+ KY + P +HY C+VDLLGRAG+L EA I M
Sbjct: 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
+ PD AVWGALL AC+IH++VEL ELA + +L+P + GYY+LL N+Y++A D + R
Sbjct: 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR MRE L DPG S+VE+KG+VH F+ D +H Q EI +L+ ++
Sbjct: 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772
Query: 433 SDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
E ++ ++ HSE+LAIAFG+INT PG I V KNL +C +CH +K +SKI
Sbjct: 773 ESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKI 832
Query: 490 VDRQFIVRDATRFHHFKSGFCSCKD 514
V R+ VRD +FHHFK G CSC D
Sbjct: 833 VRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-135
Identities = 198/525 (37%), Positives = 297/525 (56%), Gaps = 16/525 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE + + + +I G V EA +LF +M E G + T + +L
Sbjct: 180 LFDEMPERNLAS--WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G G HC +K G+ D V L+ MY KCG ++ R +FD +PEK + WN+M+
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA---- 176
+GYA +G + L LY EM+ GV D TF ++ + L LE +Q A
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL----LEHAKQAHAGLIR 353
Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
GF + N AL+++Y++ G ++ AR +FD MPRK ++SW A+I GYG HG G AV++
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
F+ M+ G+ P+ F++VLSAC ++GL+++G E F M + ++P HY CM++LLG
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
R G L+EA +I +P +W ALL AC+IHKN+EL LA K+ + P YV+
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533
Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
L N+Y+ + +V ++ + L P +++E+K + H F GDR H Q+ EIY+
Sbjct: 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593
Query: 417 LDKLENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
LD+L + E+ G + + + +E HSEKLAIAFG+INTS T + + +
Sbjct: 594 LDELMKEISEY-GYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQ 652
Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+ RIC DCH IK ++ + R+ +VRDA+RFHHFK G CSC DYW
Sbjct: 653 SHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 2e-52
Identities = 108/321 (33%), Positives = 168/321 (52%), Gaps = 3/321 (0%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N L+ GY EA+ L+ +M GV + T C+L C L G H V
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
+FG +LD V N L+TMYVKCG V R +FD++P + I+WNAMISGY +NG LE
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
L+ M+ L V PD +T V+S+C LG +G E+ + GF + + N+LI MY
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
G+ +A +F M K VSWTA+I GY +G + A++ + M + + PD S
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
VLSAC+ G D G++ + + + GL ++++ + +++ALE+ ++ E
Sbjct: 395 VLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-PE 452
Query: 315 PDGAVWGALL-GACKIHKNVE 334
D W +++ G ++ E
Sbjct: 453 KDVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 4e-51
Identities = 111/338 (32%), Positives = 172/338 (50%), Gaps = 10/338 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ +NA+ISGY N E + LF MRE V+ + +T+ ++ C G LG H
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
VK G +D SV N L+ MY+ GS K+F ++ K ++W AMISGY +NGL
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
LE Y M+ V PD +T VLS+CA LG VG+++ + + G S + NALI M
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y++C + KA +F +P K V+SWT+II G ++ A+ F +ML + ++P+
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492
Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHY--TCMVDLLGRAGQLNEALELIE 309
++ LSAC+ G G E + + ++ G + + ++DL R G++N A
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGF----DGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
S E D W LL H +A F ++++
Sbjct: 549 SH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-40
Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 39/288 (13%)
Query: 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
G + D + N ++ M+VKCG + R+LFD++PE+ L +W +I G G L+
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
REM G + TFV +L + A LG+ G ++ + G + F++ ALI+MY++C
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
G+++ AR +FDGMP KT V+W +++ GY +HG+ E A+ L+ EM SG+ D F ++
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 257 SACS-----------HAGLTDKGLEY----------FYGMKNKYGLQPGPEH-------- 287
S HAGL G Y +K+G +
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY---SKWGRMEDARNVFDRMPRK 389
Query: 288 ----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACK 328
+ ++ G G+ +A+E+ E M+ E P+ + A+L AC+
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-38
Identities = 114/431 (26%), Positives = 188/431 (43%), Gaps = 79/431 (18%)
Query: 5 SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VD 59
S STH + N+ + + + +A+ L M+E V ++ + L +C V+
Sbjct: 47 SSSSTHDS---NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVE 103
Query: 60 PGYLWLGMCCHCIC--VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
G +C + G+ L GN +++M+V+ G + + +F ++PE+ L +WN
Sbjct: 104 EG---SRVCSRALSSHPSLGVRL----GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156
Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
++ GYA+ G L LY M GV PD TF VL +C + + G EV +
Sbjct: 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216
Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
GF + + NALI MY +CG++ AR +FD MPR+ +SW A+I GY +G ++LF
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 238 DEMLKSGIRPDGTAFVSVLSAC-----------------------------------SHA 262
M + + PD SV+SAC
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE---LIESMLVEPDGAV 319
G + + F M+ K + +T M+ + G ++ALE L+E V PD
Sbjct: 337 GSWGEAEKVFSRMETKDAVS-----WTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 320 WGALLGAC----KIHKNVELAELAFGKVIKLEPMNTGY--YVLLSN----IYSEARNLDG 369
++L AC + V+L ELA G YV+++N +YS+ + +D
Sbjct: 392 IASVLSACACLGDLDVGVKLHELA---------ERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 370 IMRVRMMMRER 380
+ V + E+
Sbjct: 443 ALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 1e-17
Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 10/232 (4%)
Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
+ +NA+IS Q+G ++ EMK+ + PD +T ++ +CA+ G EV
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV----VSWTAIIGGYGIH 227
Q I P + +N ++ G+ A +I+D M +K V V ++A++ G
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
G + A ++ + K GI+ ++ S++ ACS+A K LE + +K+ L+P
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVST 721
Query: 288 YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELA 336
++ L QL +ALE++ M + P+ + LL A + + ++
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 386 PGYSYVELKGRVHLFMVGDRNH-HQTVEIYR------MLDKLENLVQEHDGTKRSDQKNS 438
PG + E + GD +H E+++ ++ + + + + D + D
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTSKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIK 56
Query: 439 EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
+ L H+EK A+A+G++ T I V+K R+CGDCH F + ++K R+ IVRD
Sbjct: 57 GKLLAS---HAEKQALAYGLLTTRI---IKVLK--RMCGDCHEFFRYIAKYTGREIIVRD 108
Query: 499 ATRFHHFK 506
+RFHHFK
Sbjct: 109 PSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
A T+ ++ +C L + V ++++GF + ++ N ++ M+ +CG L AR +F
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
D MP + + SW IIGG G+ A LF EM + G + FV +L A + G
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241
Query: 267 KGLEYFYGMKNKYGLQPGPEHYTC-MVDLLGRAGQLNEALELIESMLVEPDGAV--WGAL 323
G + + K G+ G +C ++D+ + G + +A + + M P+ W ++
Sbjct: 242 AG-QQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSM 296
Query: 324 LGACKIHKNVELA 336
L +H E A
Sbjct: 297 LAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 9e-12
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 10/238 (4%)
Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
+ L T+N ++S A + L + R ++ G+ D + ++S+CA G
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV----VSWTAIIGG 223
EV ++ G +N ALI+ AR G + KA + M K V V + A+I
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 224 YGIHGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
G G + A + EM I PD +++ AC++AG D+ E Y M ++Y +
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE-VYQMIHEYNI 610
Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELA 336
+ PE YT V+ + G + AL + + M V+PD + AL+ +++ A
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 8e-10
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
+T+N +I GY + G L+L+ EMK G+ P+ T+ ++
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
VV++ +I GY G E A++LF+EM K GI+P+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT 49
V YN LI GY V EA+ LF +M+++G++ N T
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGV 144
+T+N++ISGY + G LEL++EMK GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
+T+N +I G + G LEL++EMK G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGV 43
V YN+LISGY + EA+ LF +M+E+GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
V++ +I G G E A++LF EM + GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINS 47
V YN LI G V EA+ LF +M+E+G+E +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 23/296 (7%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLWL---G 66
+ ALI G V++A +G MR + V+ + V L+ C VD + L
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 67 MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KG-LITWNAMISG 122
H I D D LM G VD ++++ + E KG + ++
Sbjct: 570 AETHPI------DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
+Q G L +Y +MK GV PD V F ++ H G E+ Q + G
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 183 PFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
++L+ + N KKA +++ + R TV + A+I A+++
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
EM + G+ P+ + +L A D GL+ K + G++P C+ L
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
V++ ++I GY G E A++LF EM + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGRAGQLNEALELIESM- 311
L S E G+ PE+ LL R G++ + ++L+E M
Sbjct: 339 LPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLL-RDGRIKDCIDLLEDME 397
Query: 312 ---LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
L++ D ACK + V+ A F K+I+ ++T + +L+S + + ++++D
Sbjct: 398 KRGLLDMDKIYHAKFFKACKKQRAVKEA-FRFAKLIRNPTLST-FNMLMS-VCASSQDID 454
Query: 369 GIMRVRMMMRERRLKKD 385
G +RV +++E LK D
Sbjct: 455 GALRVLRLVQEAGLKAD 471
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 187 NALINMYARCGNLKKARAIFDGMPRK----TVVSWTAIIGGY 224
N LI+ Y + G +++A +F+ M ++ V +++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMR 39
V YN LI G V EAV L +M
Sbjct: 7 VVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.46 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.87 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.79 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.61 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.54 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.46 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.46 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.44 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.36 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.3 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.13 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.09 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.75 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.48 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.43 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.28 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.21 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.1 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.08 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.93 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.85 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.61 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.54 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.43 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.38 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.84 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.38 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.08 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.07 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.69 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.27 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.19 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.73 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.68 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.19 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.07 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.96 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.39 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.34 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.14 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.98 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.84 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.43 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.3 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.2 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.91 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.82 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.26 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.58 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.58 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.32 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.12 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.79 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.7 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.53 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.02 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.91 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.32 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.81 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 83.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.55 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.4 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.0 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.76 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.36 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.9 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.58 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.07 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.64 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.49 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 80.43 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.21 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-112 Score=895.08 Aligned_cols=513 Identities=38% Similarity=0.690 Sum_probs=507.1
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|++ |+ +||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+.++|..+.+.|+.+
T Consensus 180 lf~~-m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 180 LFDE-MP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHhc-CC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 5899 99 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 320 (516)
.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+..|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 400 (516)
++|+.+|..+|+++.|..+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.|++|||++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC-----CCCchhhhhhhhhhhccHHHHHHHhhhcCCCCCeEEEEeeeee
Q 043362 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR-----SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~-----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~ 475 (516)
.+||.+||+..++|..+.++..+|++.||.|| +++++++++. .+++||||||++|||+++|+|.||||+||||+
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~-~~~~hsekla~a~~l~~~~~~~~i~i~knlr~ 656 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKV-SGRYHSEKLAIAFGLINTSEWTPLQITQSHRI 656 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHH-HHHhccHHHHHHhhCccCCCCCeEEEecCCEE
Confidence 99999999999999999999999999999999 7899888888 89999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 043362 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516 (516)
Q Consensus 476 ~~~~~~a~~~~s~~~~~~~~~~~~~~~h~~~~g~~~~~~~w 516 (516)
|+|||+|+||||++.+|+|||||.+|||||++|+|||+|||
T Consensus 657 c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 657 CKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-106 Score=871.87 Aligned_cols=509 Identities=42% Similarity=0.760 Sum_probs=499.6
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|++ |+ .||+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|
T Consensus 345 vf~~-m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 345 VFSR-ME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHhh-CC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 5888 99 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||++++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 320 (516)
.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+.+||..+|
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~ 660 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVW 660 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 400 (516)
++|+.+|..+|+.+.|+.+.+++.+++|+++..|..|+++|+..|+|++|.++++.|+++|++++|++|||++++.+|.|
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC----CCCchhhhhhhhhhhccHHHHHHHhhhcCCCCCeEEEEeeeeec
Q 043362 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR----SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~ 476 (516)
.+||.+||+..+||..++++..+|++.||.|| .++++++++. .+++||||||++|||+++|+|.||||+||||+|
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~-~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c 819 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDD-IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819 (857)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHH-HHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeC
Confidence 99999999999999999999999999999999 3456777887 899999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhcCceEEEecCCccccccccccCCCC
Q 043362 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514 (516)
Q Consensus 477 ~~~~~a~~~~s~~~~~~~~~~~~~~~h~~~~g~~~~~~ 514 (516)
+|||+++||||++.+|+|||||.+|||||++|+|||+|
T Consensus 820 ~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 820 ENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-67 Score=564.10 Aligned_cols=489 Identities=26% Similarity=0.375 Sum_probs=431.5
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|++ |+ +||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.++|..+++.|+.|
T Consensus 143 ~f~~-m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 143 VFGK-MP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred HHhc-CC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 5899 99 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
|..++|+|+.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||++++.+|++
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 320 (516)
.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~ 458 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISW 458 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeH
Confidence 99999999999999999999999999999999999976 999999999999999999999999999999997 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEE--------
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE-------- 392 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~-------- 392 (516)
++++.+|.+.|+.++|..+|++|.+..++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.......
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 999999999999999999999998655556678888888888888888888888887777765543221100
Q ss_pred ------------------ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC--------------CCCchhhh
Q 043362 393 ------------------LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR--------------SDQKNSEE 440 (516)
Q Consensus 393 ------------------~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~--------------~~~~~~~~ 440 (516)
.+.. +.+...|+...++ .+++++|++.|+.|| +.++++
T Consensus 539 ~~~~A~~~f~~~~~d~~s~n~l----I~~~~~~G~~~~A----~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea-- 608 (857)
T PLN03077 539 RMNYAWNQFNSHEKDVVSWNIL----LTGYVAHGKGSMA----VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG-- 608 (857)
T ss_pred CHHHHHHHHHhcCCChhhHHHH----HHHHHHcCCHHHH----HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH--
Confidence 0111 1222345566655 578999999999999 122222
Q ss_pred hhhhhhhccHHHHHHHhhhcCCCCCeEEEEeeeeecccchhHHHHHhhhcCc------eEEEecCCccccccccc
Q 043362 441 HLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDR------QFIVRDATRFHHFKSGF 509 (516)
Q Consensus 441 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~~~~------~~~~~~~~~~h~~~~g~ 509 (516)
....+.|...+|+.|...++. ++++.+.++|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+
T Consensus 609 -----~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 609 -----LEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred -----HHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 223445555677766655554 7889999999999999999999744 23445565555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-62 Score=513.42 Aligned_cols=476 Identities=23% Similarity=0.341 Sum_probs=417.6
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 87 (516)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
|+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 327 (516)
|..||++++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++|. +||..+|++||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 9999999999999999999999999999986 999999999999999999999999999999996 68999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcC-CCCccchHHHhhHHHHcCChhHHHHHHHHHHh-CCCCCCCceeEEEECCEEEEEEeCCC
Q 043362 328 KIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-RRLKKDPGYSYVELKGRVHLFMVGDR 405 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~i~~~~~~~~f~~~~~ 405 (516)
+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|..++|.++|+.|.+ .|+.|+..... ..+..+ .
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~----~li~~l----~ 473 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA----CMIELL----G 473 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH----hHHHHH----H
Confidence 99999999999999998765 34567999999999999999999999999986 58876543211 111111 2
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCCCCC--------------CCCchhhhhhhhhhhccHHHHHHHhhhcCCCCCeEEEEe
Q 043362 406 NHHQTVEIYRMLDKLENLVQEHDGTKR--------------SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471 (516)
Q Consensus 406 ~~~~~~~~~~~l~~l~~~m~~~g~~p~--------------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 471 (516)
..+..+++ .+.+++.++.|+ ++++.+. ...++ .+++.+...+..+.+++
T Consensus 474 r~G~~~eA-------~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~-------~~~~~---l~~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 474 REGLLDEA-------YAMIRRAPFKPTVNMWAALLTACRIHKNLELGR-------LAAEK---LYGMGPEKLNNYVVLLN 536 (697)
T ss_pred hcCCHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH-------HHHHH---HhCCCCCCCcchHHHHH
Confidence 23344444 334556788888 1222111 11111 13443433344556667
Q ss_pred eeeecccchhHHHHHhhhcCceE-------EEecCCccccccccccC
Q 043362 472 NLRICGDCHLFIKLVSKIVDRQF-------IVRDATRFHHFKSGFCS 511 (516)
Q Consensus 472 ~l~~~~~~~~a~~~~s~~~~~~~-------~~~~~~~~h~~~~g~~~ 511 (516)
-+..+|+..+|.+++..|..+.+ .+.-.+..|.|..|-.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 78999999999999999998865 23445667888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=492.89 Aligned_cols=481 Identities=19% Similarity=0.247 Sum_probs=402.4
Q ss_pred CccccCCCCCCcccH-----HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHH
Q 043362 1 VFDESIKSTHLTVCY-----NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~-----n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 75 (516)
+|++ |+ .++++.| +.++.+|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 392 Lfd~-M~-~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 392 LLED-ME-KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHH-HH-hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4677 77 6665554 4556678888999999999988873 9999999999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC----CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 043362 76 FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP----EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151 (516)
Q Consensus 76 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 151 (516)
.|+.||..+|++||.+|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 466 ~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTY 545 (1060)
T PLN03218 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999998 478899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC----CCHhHHHHHHHHHH
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQA--NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR----KTVVSWTAIIGGYG 225 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~ 225 (516)
+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|+.|.+ ++..+||++|.+|+
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999987 68999999999999999999999999999999974 56799999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|+.||.+|+++|++++|.
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976 99999999999999999999999999
Q ss_pred HHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 306 ELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 306 ~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
++|++|. ..||..+|++||.+|.+.|++++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++++.|.+.|
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999996 67999999999999999999999999999998765 3456799999999999999999999999999999
Q ss_pred CCCCCceeEEEE-------------CCEEEEEEeCCCCCcchHH-HHHHHHHHHHHHHhCCCCCCC----CCchh-hhhh
Q 043362 382 LKKDPGYSYVEL-------------KGRVHLFMVGDRNHHQTVE-IYRMLDKLENLVQEHDGTKRS----DQKNS-EEHL 442 (516)
Q Consensus 382 ~~~~~~~s~i~~-------------~~~~~~f~~~~~~~~~~~~-~~~~l~~l~~~m~~~g~~p~~----~~~~~-~~~~ 442 (516)
+.|+.......+ ...+..|-.+ ++.... -......++++|.+.|+.||. .+-.. .+.
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~- 860 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP- 860 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-
Confidence 988764221111 1111122111 111111 112345899999999999991 00000 000
Q ss_pred hhhhhccHHHHHHHhhhcCCCCCeE--EEEeeeeecccchhHHHHHhhhcCceEE
Q 043362 443 NDTEVHSEKLAIAFGIINTSPGTEI--VVMKNLRICGDCHLFIKLVSKIVDRQFI 495 (516)
Q Consensus 443 ~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~l~~~~~~~~a~~~~s~~~~~~~~ 495 (516)
.-......|-..++..+.+++... .+++.+ |..-+.|..++..|..+.|+
T Consensus 861 -~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 861 -HDATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred -ccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCCC
Confidence 001123344455666666665432 244433 11125799999998888553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=481.00 Aligned_cols=384 Identities=19% Similarity=0.258 Sum_probs=361.7
Q ss_pred CccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 1 ~f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
+|+. |+ .||+.+||.||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 428 lf~~-M~-~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 428 FAKL-IR-NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHH-cC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 3667 99 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCC----CCchHHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE----KGLITWNAMISGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGV 154 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~l 154 (516)
|..+|++||.+|++.|++++|.++|+.|.+ ||.++||+||.+|++.|++++|.++|.+|.. .|+.||..||+++
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 999999999999999999999999999964 6789999999999999999999999999986 6799999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCH
Q 043362 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 155 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~ 230 (516)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999997 46999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
++|.++|++|.+.|++||..+|++++.+|++.|++++|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|++
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 9999999999999999999999999999999
Q ss_pred cC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCccchHHHhhHHH----HcC-----------------
Q 043362 311 ML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYS----EAR----------------- 365 (516)
Q Consensus 311 m~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g----------------- 365 (516)
|. ..||..+|++++.+|.+.|+++.|.+++++|.+.+ .++..+|..++.+|. +++
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~ 824 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIE 824 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Confidence 97 67999999999999999999999999999999865 345668888877643 222
Q ss_pred --ChhHHHHHHHHHHhCCCCCCCc
Q 043362 366 --NLDGIMRVRMMMRERRLKKDPG 387 (516)
Q Consensus 366 --~~~~a~~~~~~m~~~~~~~~~~ 387 (516)
..++|..+|++|.+.|+.|+..
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHH
Confidence 2367999999999999988753
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=197.26 Aligned_cols=101 Identities=54% Similarity=0.891 Sum_probs=85.7
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC-----CCCchh--------hhhhhhhhhccHHHH
Q 043362 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR-----SDQKNS--------EEHLNDTEVHSEKLA 453 (516)
Q Consensus 387 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~-----~~~~~~--------~~~~~~~~~~~~~la 453 (516)
++||+++ |.|.+||.+||+. ++..++...||.|+ ++++++ +++. .+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~-~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEE-SLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchh-hhhccHHHHH
Confidence 5789876 9999999999998 34556666777776 344333 3344 7789999999
Q ss_pred HHHhhhcCCCCCeEEEEeee-eecccchhHHHHHhhhcCceEEEecCCcccccc
Q 043362 454 IAFGIINTSPGTEIVVMKNL-RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506 (516)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~~a~~~~s~~~~~~~~~~~~~~~h~~~ 506 (516)
++||++++ +|+||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-23 Score=229.56 Aligned_cols=364 Identities=12% Similarity=0.090 Sum_probs=287.2
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
.+...+..+...+...|++++|...|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 356677788888888899999999998888764 4566778888888888888889988888887775 56667788888
Q ss_pred HHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 166 (516)
..|.+.|++++|..+++.+.+. +..+|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 8888889998888888887542 35678888888888888888888888887653 3456677778888888888888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
|..+++.+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++...
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 888888888764 44577888888888888888888888888763 35667777888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWG 321 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~ 321 (516)
.|+..++..+..++.+.|++++|.+.+..+.+. .+.+...+..+...|...|++++|.+.|+++. .. ++..+++
T Consensus 733 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 733 --APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred --CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 355566777788888888888888888888763 34467778888888888888888888888775 23 3577788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
.+...+...|+ ++|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888888 7788888888888888877777888888888888888888888877554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-23 Score=226.60 Aligned_cols=362 Identities=14% Similarity=0.059 Sum_probs=321.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
++..+|+.+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+++.. +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 467889999999999999999999999998764 4456677788888999999999999999999876 66788999999
Q ss_pred HHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 166 (516)
..|.+.|+.++|...|+++.+. +...+..++..|.+.|++++|+.+++++... .+.+..+|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988543 3467888999999999999999999999875 35677899999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
|...++.+.+.. +.+...+..+..+|.+.|++++|.++|+++.+ .+..+|..++..+...|++++|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998864 45677889999999999999999999998753 36789999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWG 321 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~ 321 (516)
+ +++...+..+...+...|++++|...|..+... .|+..++..++..+.+.|++++|.+.++++. .. .+..++.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 556778888899999999999999999999854 5666888889999999999999999998876 33 4688888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+...|...|+.++|...|+++.+..|+++.++..++.++...|+ .+|..+++++.+.
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 8899999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-21 Score=182.21 Aligned_cols=358 Identities=14% Similarity=0.182 Sum_probs=303.4
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh-HHHHHHH
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMT 90 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~ 90 (516)
..+|..+...+-..|++++|+.+++.|.+.. +-....|..+..++...|+.+.|.+.+...++.. |+.. +.+.+-.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 4578889999999999999999999999873 3346789999999999999999999999988874 5443 4455566
Q ss_pred HHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 166 (516)
..-..|++++|...+.+..+.+ .++|+.|...+..+|+...|+..|++.... .|+ ...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 6667899999999988766544 378999999999999999999999998874 565 4688899999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
|...+.+..... +....++..|...|-..|.++-|...|++..+. -...|+.|..++-..|+..+|.+.|.+....
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998887753 334667778888899999999999999987643 3578999999999999999999999998874
Q ss_pred CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHH
Q 043362 244 GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAV 319 (516)
Q Consensus 244 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~ 319 (516)
.|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|...+++.. ++|+ ...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 444 46788899999999999999999998874 4554 4567889999999999999999998876 7787 788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.+...|...|+.+.|.+.+.+++.++|.-..++..|+.+|..+|+..+|..-++...+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999988889999999999999999999998887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-20 Score=182.63 Aligned_cols=298 Identities=13% Similarity=0.084 Sum_probs=151.5
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-------chHHHHHHHHHHHcCChh
Q 043362 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGLAT 130 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~ 130 (516)
...|++++|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455666666666665553 3344455556666666666666666655544321 124555555666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 131 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+|+.+|+++.+. -+++..++..++..+...|++++|.+.++.+.+.+..+....
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 666666665543 123444555555555566666666666555555432111100
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHH
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 290 (516)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..
T Consensus 179 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~ 254 (389)
T PRK11788 179 --IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPK 254 (389)
T ss_pred --HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHH
Confidence 00122334444445555555555555554431 112334444455555555555555555555432 11111234455
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH---cCC
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE---ARN 366 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~ 366 (516)
++.+|.+.|++++|...++++. ..|+...+..+...+...|++++|..+++++.+..|++. .+..++..+.. .|+
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCcc
Confidence 5555555666666665555544 335444445555556666666666666666666555543 33333333332 345
Q ss_pred hhHHHHHHHHHHhCCCCCCCc
Q 043362 367 LDGIMRVRMMMRERRLKKDPG 387 (516)
Q Consensus 367 ~~~a~~~~~~m~~~~~~~~~~ 387 (516)
.+++..+++.|.+++++++|.
T Consensus 334 ~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chhHHHHHHHHHHHHHhCCCC
Confidence 666666666666666555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-19 Score=184.11 Aligned_cols=359 Identities=12% Similarity=0.016 Sum_probs=286.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
+......|.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 446677888999999999999998875 6888889999999999999999999999999875 5567788999999999
Q ss_pred cCCHHHHHHHHcccCC---------------------------------CCchHHHHHHHH-------------------
Q 043362 95 CGSVDYGRKLFDQVPE---------------------------------KGLITWNAMISG------------------- 122 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~---------------------------------~~~~~~~~li~~------------------- 122 (516)
.|++++|...|..... .+..++..+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999865533210 001111111000
Q ss_pred -------H----------HHcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 043362 123 -------Y----------AQNGLATHVLELYREMKSLG-VCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183 (516)
Q Consensus 123 -------~----------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 183 (516)
+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...+++.++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0 11257889999999998764 234 34567777888889999999999999999864 3346
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
..|..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 688889999999999999999998765 3367889999999999999999999999998853 334667778888999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HH-------HHHHHHHHHHhcC
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GA-------VWGALLGACKIHK 331 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~-------~~~~ll~~~~~~g 331 (516)
+.|++++|...|+...+. .+.++..++.+...|...|++++|.+.|++.. ..|+ .. .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999999863 23357889999999999999999999999865 3342 11 1222223344569
Q ss_pred CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++++|..+++++++++|++...+..++.+|...|++++|.+.++...+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999988653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=183.05 Aligned_cols=258 Identities=12% Similarity=0.089 Sum_probs=208.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHh
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN---PFLNNALINMYAR 195 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~ 195 (516)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888887753 23445677777788888888888888888777532221 2567888999999
Q ss_pred CCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHH
Q 043362 196 CGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG----TAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 268 (516)
.|++++|.++|+++.+ .+..+++.++..+.+.|++++|.+.++++.+.+..++. ..+..+...+...|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999998865 46778999999999999999999999999886543322 2355677788999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD--GAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
..+|+++.+. .+.+...+..+...|.+.|++++|.++++++. ..|+ ..+++.++.+|...|+.++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999864 12346678888999999999999999999987 3454 45688899999999999999999999999
Q ss_pred cCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 346 LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 346 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..|+.. .+..++.++.+.|++++|.++++.+.+.
T Consensus 278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999764 5688999999999999999999988765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=171.95 Aligned_cols=355 Identities=14% Similarity=0.138 Sum_probs=304.2
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHH-HHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+-+ ......|++.+|...+.+.++.. +-=..+|+.|
T Consensus 148 ~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnL 224 (966)
T KOG4626|consen 148 KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNL 224 (966)
T ss_pred hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-Cceeeeehhc
Confidence 46889999999999999999999999999875 67665544333 33445799999999999998874 3334579999
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~ 164 (516)
...+-..|++..|...|++....|+ .+|-.|...|...+.+++|+..|.+.... .|+ .+.+..+...|...|.+
T Consensus 225 g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 225 GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccH
Confidence 9999999999999999999887664 68989999999999999999999988764 565 56788888889999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
+.|+..+++.++.. +.-...|+.|..++-..|+..+|.+.|.+... .-..+.+.|...|...|.+++|..+|....
T Consensus 303 dlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 303 DLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999864 33478999999999999999999999998763 245688889999999999999999999988
Q ss_pred HcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-H
Q 043362 242 KSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPD-G 317 (516)
Q Consensus 242 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~ 317 (516)
+ +.|. ...++.|...|-+.|++++|...++... .+.|+ ...|+.+...|-..|+.+.|.+.+.+.. ..|. .
T Consensus 382 ~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 382 E--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred h--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 7 5565 4678899999999999999999999998 56886 5689999999999999999999999876 6676 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHH
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
...+.|.+.|...|++.+|+..++..++++|+.+.+|-.++.+.--..+|.+-.+.++
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 8899999999999999999999999999999999999999888877777766433333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-18 Score=176.53 Aligned_cols=328 Identities=9% Similarity=-0.047 Sum_probs=260.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
-.++..+.+.|++.+|+.+++..+... +-+...+..++.+....|+++.|.+.++.+++.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 346678888999999999999998774 3334455566667778999999999999999886 66677888899999999
Q ss_pred CCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043362 96 GSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
|++++|...|++..+. +...|..+...+...|++++|...++++..... .+...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999987653 356888899999999999999999998876532 223333333 34778899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCC
Q 043362 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEV----AVQLFDEMLKSGI 245 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~ 245 (516)
.+.+....++......+...+.+.|++++|.+.|++... .+...+..+...|.+.|++++ |+..|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 988765334455556667888999999999999988753 367788889999999999885 899999988752
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHH-HHH
Q 043362 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAV-WGA 322 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~~~ 322 (516)
+.+...+..+...+...|++++|...+++.... .| +...+..+...|.+.|++++|.+.++++. ..|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 334667888899999999999999999998864 44 45667788899999999999999998876 5576444 334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+..++...|+.++|...++++.+..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56678899999999999999999988754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-17 Score=169.32 Aligned_cols=350 Identities=11% Similarity=0.005 Sum_probs=277.9
Q ss_pred HhCCCchHHHHHHHHhHHCC--CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 100 (516)
.+..+++.---.|....+.- -.-+......++..+.+.|+++.|..+++..+... +.+......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 35556655544554443321 11233446667788889999999999999998886 4445556666677778999999
Q ss_pred HHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 101 GRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 101 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
|...|+++.+.+ ...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999987543 4688889999999999999999999998752 334667788889999999999999999988776
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
... +...+..+. .+...|++++|...++.+.+. +...+..+..++.+.|++++|+..|++..... +.+...+.
T Consensus 174 ~P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCC-CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 433 333443343 478899999999999987543 33344556778899999999999999999863 34566777
Q ss_pred HHHHHHhccCChHH----HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDK----GLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGA 326 (516)
Q Consensus 254 ~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~ 326 (516)
.+..++...|++++ |...|+++.+. .| +...+..+...+.+.|++++|...+++.. ..|+ ...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88899999999986 89999999853 44 57788999999999999999999999876 4564 6778888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+...|++++|...++++.+..|++...+..++.++...|++++|...++...+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988766777788999999999999999988654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-16 Score=176.21 Aligned_cols=348 Identities=10% Similarity=0.024 Sum_probs=280.9
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 99 (516)
..+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 45678999999999999999874 4456677788889999999999999999999875 555667777888875 56789
Q ss_pred HHHHHHcccCCCC------------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 100 YGRKLFDQVPEKG------------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 100 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
+|..+++.++... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876432 1245567788899999999999999998853 22456777888899999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CH---------hHHHHHHHHHHhcCCHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----TV---------VSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~---------~~~~~li~~~~~~g~~~~A~ 234 (516)
...++++.+.. +.+...+..+...+.+.|+.++|...++.++.. +. ..+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999998754 335555556666778899999999999998642 11 11234566788999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 313 (516)
.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|.+.++... .
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99882 3455667778888999999999999999999864 23367888999999999999999999999876 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------cchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 314 EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT------GYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 314 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.| +...+..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|...++....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45 466777788889999999999999999998776544 2556678999999999999999988753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-16 Score=178.33 Aligned_cols=354 Identities=9% Similarity=0.015 Sum_probs=232.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-ChhHH------------
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-DFSVG------------ 85 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------ 85 (516)
...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++.+++..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677888889999988888763 3466777788888888889999998888888764221 11112
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC---- 158 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---- 158 (516)
..+...+.+.|++++|...|++..+.+ ...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 122445678888888888888876533 4567778888888889999988888887642 22333443333333
Q ss_pred --------------------------------------HhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHH
Q 043362 159 --------------------------------------AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200 (516)
Q Consensus 159 --------------------------------------~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 200 (516)
...|++++|.+.++++++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33455555555555555442 223444445555555555555
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCChHHH
Q 043362 201 KARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT---------AFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 201 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a 268 (516)
+|...|+++.+ .+...+..+...+...++.++|+..++++......++.. .+..+...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555554421 133333333333444555555555555432211111111 112334455666777777
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
..+++. .++++..+..+...|.+.|++++|.+.|++.. ..| +...+..+...+...|+.++|+..++++.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 766651 13355667778888999999999999998876 445 5788888889999999999999999999888
Q ss_pred CCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 347 EPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 347 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|+++..+..++.++...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-16 Score=165.53 Aligned_cols=189 Identities=11% Similarity=0.002 Sum_probs=152.1
Q ss_pred HHHhCCCHHHHHHHHhcCCCCC---H-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCC
Q 043362 192 MYARCGNLKKARAIFDGMPRKT---V-VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP---DGTAFVSVLSACSHAGL 264 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~ 264 (516)
++...|++++|.+.|+.+.+.+ + ..-..+..+|...|++++|+..|+++....... .......+..++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4457799999999999987542 1 112225778999999999999999987643111 12445667778899999
Q ss_pred hHHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043362 265 TDKGLEYFYGMKNKYG----------LQPG---PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI 329 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 329 (516)
+++|.++++.+.+... -.|+ ...+..+...+...|++++|+++++++. ..| +...+..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999986411 1123 2345677888999999999999999976 345 58889999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.|++++|+..++++++++|++...+..++..+...|++++|..+++.+.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-15 Score=157.95 Aligned_cols=334 Identities=12% Similarity=-0.002 Sum_probs=259.7
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCC----------
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL---------- 78 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------- 78 (516)
.|+...|..+..+|.+.|++++|++.+...++.. +.+...+..+..++...|++++|..-+..+...+-
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5677889999999999999999999999998863 34456788889999999999999765543322110
Q ss_pred -------------------CCChhHHHHH------------------------------HHHH------HHcCCHHHHHH
Q 043362 79 -------------------DLDFSVGNCL------------------------------MTMY------VKCGSVDYGRK 103 (516)
Q Consensus 79 -------------------~~~~~~~~~l------------------------------l~~~------~~~g~~~~A~~ 103 (516)
+++...+..+ +..+ ...+++++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 1110000000 1111 11257889999
Q ss_pred HHcccCCC------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 104 LFDQVPEK------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 104 ~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
.|+...+. ....|+.+...+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...++.+++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99887643 2357888889999999999999999999875 454 56788888899999999999999999988
Q ss_pred cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .+.+...+.
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~ 471 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYN 471 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHH
Confidence 74 45678899999999999999999999998753 35677888899999999999999999998875 233567888
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP--------EHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGAL 323 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l 323 (516)
.+...+...|++++|...|++.... .|+. ..++.....+...|++++|.+++++.. ..|+ ...+..+
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8999999999999999999998753 3321 112222333445799999999999864 4564 6678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
...+...|++++|...|+++.++.+..
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-14 Score=155.68 Aligned_cols=337 Identities=12% Similarity=0.028 Sum_probs=244.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
+...+..+...+...|++++|..+|++.++.. +.+...+..+...+...|+.++|...++.+++.. +.+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 34457778888888888888888888877652 3345556666677778888888888888887774 55555 777788
Q ss_pred HHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHH-----------------------------------
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHV----------------------------------- 132 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A----------------------------------- 132 (516)
++...|+.++|...++++.+.+ ...+..+...+...|..++|
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 8888888888888888775433 23444555555555555544
Q ss_pred -----------HHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CchHHHHHHHHHHH
Q 043362 133 -----------LELYREMKSL-GVCPDAV-TFV----GVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALINMYA 194 (516)
Q Consensus 133 -----------~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~ 194 (516)
++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 4444444432 1122221 111 1133456778999999999999987632 22 22233677899
Q ss_pred hCCCHHHHHHHHhcCCCCC-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHH
Q 043362 195 RCGNLKKARAIFDGMPRKT-------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-----------RPDG---TAFV 253 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~t~~ 253 (516)
..|++++|...|+++.+.+ ...+..+..++.+.|++++|..+++++..... .|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 9999999999999875432 23456677788999999999999999987521 1332 2445
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHK 331 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g 331 (516)
.+...+...|++++|++.++++... .+.+...+..+...+...|++++|++.+++.. ..|+ ...+..+...+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 6777888999999999999999864 34467888999999999999999999999887 5675 667777778889999
Q ss_pred CHHHHHHHHHHHhhcCCCCccc
Q 043362 332 NVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
++++|+.+++++++..|+++.+
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999998743
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-14 Score=150.07 Aligned_cols=360 Identities=12% Similarity=0.072 Sum_probs=252.3
Q ss_pred CCCcccHHHH-HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc-CCCchHHHHHHHHHHHhCCCCChhHHH
Q 043362 9 THLTVCYNAL-ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHCICVKFGLDLDFSVGN 86 (516)
Q Consensus 9 ~~~~~~~n~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~ 86 (516)
.|+....... ...|.+.|++++|+.++.++.+.+ +.+..-...+..++.. .++ +.+..++.. .+..++.++.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3334433444 889999999999999999999986 3344446666667776 366 767666442 3346888999
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC-----chH-------------------------------------------HHH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG-----LIT-------------------------------------------WNA 118 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~-----~~~-------------------------------------------~~~ 118 (516)
.+++.|.+.|+.++|.+++++++..+ ..+ |..
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999998874210 000 000
Q ss_pred --------------------------------------------------HHHHHHHcCChhHHHHHHHHHHHC-C-CCC
Q 043362 119 --------------------------------------------------MISGYAQNGLATHVLELYREMKSL-G-VCP 146 (516)
Q Consensus 119 --------------------------------------------------li~~~~~~g~~~~A~~~~~~m~~~-g-~~p 146 (516)
+.....++|+.++|.++|+..... + -.+
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 000113456666666666655331 0 011
Q ss_pred ----------------------------------------------------------------CHHHHHHHHHHHHhcC
Q 043362 147 ----------------------------------------------------------------DAVTFVGVLSSCAHLG 162 (516)
Q Consensus 147 ----------------------------------------------------------------~~~t~~~ll~~~~~~g 162 (516)
+...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 11122222222222 4
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...|++.
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555666555555432 3433333444455678888888888886653 34455667777888889999999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GA 318 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~ 318 (516)
.... +++...+..+.......|++++|...+.+..+ +.|+...+..+..++.+.|+.++|...+++.. ..|+ ..
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8753 22333333444455567999999999999984 46788889999999999999999999999887 5564 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.++.+..++...|+.++|+..++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888899999999999999999999999999999999999999999999999999987643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-14 Score=147.12 Aligned_cols=359 Identities=12% Similarity=0.029 Sum_probs=249.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChh-hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSV-TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 93 (516)
|...| ...++|++++|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -+.......++...|.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 44444 355778888888888888765 45532 2226677777778888888888877711 1222333334456777
Q ss_pred HcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
..|++++|.++|+++.+.+ ...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 7888888888888876543 355667777788888888888888887764 45655554444444445556558888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---------------------------------------
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--------------------------------------- 211 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------------------------------------- 211 (516)
++++.+.. +.+...+..++....+.|-...|.++...-+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 88888764 44566666677777777766655555443220
Q ss_pred --------------CCH-hHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 212 --------------KTV-VSW----TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 212 --------------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
|.. ..| --.+-++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 000 011 1234466778889999999999998876645567788899999999999999999
Q ss_pred HHhHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C---------------CC-HHHHHHHHHHHHhcC
Q 043362 273 YGMKNKYG----LQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-E---------------PD-GAVWGALLGACKIHK 331 (516)
Q Consensus 273 ~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~---------------p~-~~~~~~ll~~~~~~g 331 (516)
..+....+ ..++......|.-+|...+++++|..+++++.. . || ......++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 98865422 123444467788888899999999999887751 1 22 223344556678889
Q ss_pred CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.+|++.++++....|.|......++.++...|...+|.+.++.....
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-13 Score=144.48 Aligned_cols=361 Identities=12% Similarity=0.021 Sum_probs=270.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 043362 17 ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG 96 (516)
Q Consensus 17 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 96 (516)
.++..+...|+.++|+..+++.... .+.....+..+...+...|++++|.++++.+++.. +.+..++..++..|...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 8888999999999999999998821 12222233333557788899999999999999986 556788888999999999
Q ss_pred CHHHHHHHHcccCCCCchHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--
Q 043362 97 SVDYGRKLFDQVPEKGLITWNAMISGYAQ--NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-- 172 (516)
Q Consensus 97 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~-- 172 (516)
+.++|++.++++...+......+..+|.. .++..+|++.++++.+.. +-+...+.....+..+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999999987765433334445554 556666999999998863 3345555666666666654444433322
Q ss_pred ----------------------------------------------HHHH-cC-CCCchHH-HHH---HHHHHHhCCCHH
Q 043362 173 ----------------------------------------------QIQA-NG-FGSNPFL-NNA---LINMYARCGNLK 200 (516)
Q Consensus 173 ----------------------------------------------~~~~-~g-~~~~~~~-~~~---li~~y~~~g~~~ 200 (516)
.+.. .+ .++.... ..+ -+-++.+.|++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2222 11 1211111 222 234566789999
Q ss_pred HHHHHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 201 KARAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-----IRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 201 ~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
++.+.|+.++.. ...+--++..+|...+++++|+.+|+++.... ..++......|.-++...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999843 23455678899999999999999999987643 122333457888999999999999999
Q ss_pred HHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 272 FYGMKNKYG----------LQPG---PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 272 ~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
++.+.+... -.|+ ...+..++..+...|++.+|++.++++. ..| |...+..+...+...|.+.+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999986311 0122 2334556788899999999999999987 445 789999999999999999999
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.++.+..++|++..+....+.++...|+|++|.++.+.+...
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-13 Score=144.42 Aligned_cols=346 Identities=14% Similarity=0.038 Sum_probs=262.6
Q ss_pred CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHHcCC---HHH
Q 043362 26 SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF-G-LDLDFSVGNCLMTMYVKCGS---VDY 100 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~ll~~~~~~g~---~~~ 100 (516)
+...++...++.|.+.. +-+....-.+--...+.|+.++|.++++..... + -..+....+-|++.|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 55566666666666551 224444444444456778899999998887663 1 12345566688888988877 333
Q ss_pred HHHHHccc-------------------------CC---C--CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 101 GRKLFDQV-------------------------PE---K--GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 101 A~~~f~~~-------------------------~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
+..+-..+ .. . +...|..+..++.. ++.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 43331111 11 1 34567777777776 8899999988887764 477665
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH---HHHHHhc
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI---IGGYGIH 227 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~ 227 (516)
...+..++...|++++|...++++... +|+...+..+...+.+.|++++|.+.|+...+.++..++.. .......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 555556667899999999999998665 34445566778889999999999999988765443333333 3334455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
|++++|+..|++..+. .|+...+..+..++.+.|++++|...+.+.... .| +...+..+...+...|++++|.+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999884 577888999999999999999999999999853 45 56788888899999999999999
Q ss_pred HHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 307 LIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 307 ~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
.+++.. ..| +...+..+..++...|++++|+..+++++++.|++..+.....+...+..+++.|.+-++.....++
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999876 456 5888999999999999999999999999999999998999999999999999999988877765544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-12 Score=117.97 Aligned_cols=331 Identities=13% Similarity=0.177 Sum_probs=244.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
++..||..||.++++-...+.|.+++++......+.+..+||.++.+-+- ..++++..+|+...+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 46689999999999999999999999999988789999999999987543 34588999999999999999999999
Q ss_pred HHHHHcCCHHHHHHH----HcccC----CCCchHHHHHHHHHHHcCChhH-HHHHHHHHHHC----CCC---C-CHHHHH
Q 043362 90 TMYVKCGSVDYGRKL----FDQVP----EKGLITWNAMISGYAQNGLATH-VLELYREMKSL----GVC---P-DAVTFV 152 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~----f~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~---p-~~~t~~ 152 (516)
+..++.|+++.|.+. +.+|+ +|...+|..+|..+.+.++..+ |..++.++... .++ | |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 999999998876654 45554 4556899999999999988855 44555555432 222 3 566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCc---hHHHHHHHHHHHhCCCHHHHHHHHhcCCC----CCHhHHHHHH
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANG----FGSN---PFLNNALINMYARCGNLKKARAIFDGMPR----KTVVSWTAII 221 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li 221 (516)
+.+..|....+.+.|.+++..+.... +.++ ..-|..+..+.+....++.-...|+.|.. |+..+-..++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 99999999999999999998775421 2233 34567788888899999999999998874 4666667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-Ch-------------HHHHHHH-------HHhHHhcC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG-LT-------------DKGLEYF-------YGMKNKYG 280 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~-------------~~a~~~~-------~~~~~~~~ 280 (516)
.+..-.|.++-.-+++.++...|...+......++.-+++.. .. +-|..++ .++. .
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~ 517 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---A 517 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---h
Confidence 888888888888888888888775544444444444444333 10 0011111 1122 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESML-------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
........++..-.+.|.|+.++|.+++.... ..|......-++......++...|..+++-+...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34456677888888999999999999887652 23444444456667777888888888888876644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=142.68 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=111.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTF-VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 197 (516)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|.+.++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455667778888888877554433223444433 33444556677888888888888776532 55667777776 6888
Q ss_pred CHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 198 NLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 198 ~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
++++|.++++..- .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899888887663 3466777888888999999999999999977532 345667788888889999999999999999
Q ss_pred hHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 275 MKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 275 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
..+. .| |......++..+...|+.+++.++++... ...|...|..+..++...|+.++|...+++..+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9865 56 47788889999999999999888777664 234567788999999999999999999999999999999
Q ss_pred cchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 352 GYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.....++.++...|+.++|.+++....
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-12 Score=127.06 Aligned_cols=328 Identities=13% Similarity=0.077 Sum_probs=225.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccc---CCCCchHHHHHHHHHHHcCChhHHHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV---PEKGLITWNAMISGYAQNGLATHVLEL 135 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 135 (516)
..|+++.|..++.++++.. +.....|-+|...|-..|+.+++...+-.. ...|...|..+..-..+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3377777777777777765 556667777777777777777777665433 333456677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHH----HHHHHHHHhCCCHHHHHHHHhcCCC
Q 043362 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGMPR 211 (516)
Q Consensus 136 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~m~~ 211 (516)
|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-. -..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777652 344444445556677777777777777777765432222222 2334556666666777777766543
Q ss_pred --C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHHHH
Q 043362 212 --K---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---------------------------IRPDGTAFVSVLSAC 259 (516)
Q Consensus 212 --~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~ 259 (516)
. +...++.++..|....+++.|......+.... +.++... .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 1 34456777777777777888777776665521 1222222 1122233
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHH
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVE 334 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~~g~~~ 334 (516)
.+....+....+....... .+.| ++..|.-+.++|...|++.+|..+|..+... .+...|--+...|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4444444444444444443 5333 5778999999999999999999999998732 25779999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeE
Q 043362 335 LAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390 (516)
Q Consensus 335 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 390 (516)
+|.+.+++++...|++..+-..|+.+|.+.|+.++|.+++..|..-+-...++..|
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999887433333344555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-12 Score=125.60 Aligned_cols=279 Identities=12% Similarity=-0.006 Sum_probs=210.9
Q ss_pred CCCchHHHHHHHHHHHhCCCCChhHHHHH-HHHHHHcCCHHHHHHHHcccCCCCch--HH--HHHHHHHHHcCChhHHHH
Q 043362 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCL-MTMYVKCGSVDYGRKLFDQVPEKGLI--TW--NAMISGYAQNGLATHVLE 134 (516)
Q Consensus 60 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~~A~~~f~~~~~~~~~--~~--~~li~~~~~~g~~~~A~~ 134 (516)
.|+++.|++......+.. +++.++-.+ .....+.|+++.|...|.++.+.+.. .. -.....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887776654432 223333333 34447889999999999887654322 11 133567888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP-------FLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 135 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
.++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. .+|..++....+..+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999988764 335667778888889999999999999999887644322 234455555556667788888888
Q ss_pred cCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 043362 208 GMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284 (516)
Q Consensus 208 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 284 (516)
.+++ .++.....+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...++ .+-|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence 8863 47788889999999999999999999998874 455422 2334445569999999999999865 2346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
+..+.++...+.+.|++++|.+.|+... ..|+...+..+...+...|+.++|...+++.+.+-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6778899999999999999999999887 67999999999999999999999999999987653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-12 Score=119.60 Aligned_cols=345 Identities=14% Similarity=0.122 Sum_probs=225.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC------------Chh
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL------------DFS 83 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~ 83 (516)
|.+--.|.+.|.++.|+..|+...+. .|+..+-..|+-.+...|+.++.++.|..++.....+ +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 33444567889999999999888776 6777665555555556688888888888888754322 222
Q ss_pred HHHHHH-----HHHHHcCC--HHH----HHHHHcccCCCCc---hHHH----------H--------HHHHHHHcCChhH
Q 043362 84 VGNCLM-----TMYVKCGS--VDY----GRKLFDQVPEKGL---ITWN----------A--------MISGYAQNGLATH 131 (516)
Q Consensus 84 ~~~~ll-----~~~~~~g~--~~~----A~~~f~~~~~~~~---~~~~----------~--------li~~~~~~g~~~~ 131 (516)
..|.-+ .-.-+... -++ |.++..-+..++. .-|. - -..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222211 11111111 111 2222222233331 0111 0 1234788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH--HH----------------------------------HHHhcCChHHHHHHHHHHH
Q 043362 132 VLELYREMKSLGVCPDAVTFVGV--LS----------------------------------SCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 132 A~~~~~~m~~~g~~p~~~t~~~l--l~----------------------------------~~~~~g~~~~a~~~~~~~~ 175 (516)
|+++++-+.+..-+.-+..-+.+ +. .....|+++.|.+.+++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 99998877654322111111111 11 1112367777777777777
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 252 (516)
...-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++.+.... ++.|+..+
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 654333333333 2334667788888888876653 345556666777787888888888888776553 55567777
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH-Hhc
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGAC-KIH 330 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~ 330 (516)
.-|...|-+.|+-.+|.+.+..--+ -++-+.++..-|..-|....-.++|..+|++.. .+|+..-|..++..| ++.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 8888888888888888887654432 344577888888888888888899999998876 789999999988665 678
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
|+++.|..+++.+.+..|.+......|+.++...|.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999899998888888888888775
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-11 Score=119.19 Aligned_cols=282 Identities=9% Similarity=-0.033 Sum_probs=175.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHcccCC----CCchHHHHHHHHHHHcCChhHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKLFDQVPE----KGLITWNAMISGYAQNGLATHVL 133 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 133 (516)
..|+++.|.+.+....+.. |+.. .+-.....+.+.|+.+.|.+.|.+..+ .++...-.....+.+.|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4588888888887766553 3332 333445667777888888888877532 22223333466777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHH-------HHHHHHHHhCCCHHHHHHHH
Q 043362 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-------NALINMYARCGNLKKARAIF 206 (516)
Q Consensus 134 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-------~~li~~y~~~g~~~~A~~~~ 206 (516)
+.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+..... ..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887763 335556777778888888888888888888887644333221 11121112223334555555
Q ss_pred hcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 207 DGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF---VSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 207 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
+..++ .+...+..+...+...|+.++|.+++++..+. .||.... ....-.....++.+.+.+.++...+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 55553 36777777888888888888888888887774 3333311 1111122334666777777776665422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNEALELIES--ML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
-.|+.....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222214555677777777777777777773 32 457776677777777777777777777777644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=132.00 Aligned_cols=256 Identities=16% Similarity=0.105 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHH-HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 17 ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLC-LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 17 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
.+...+.+.|++++|+++++.......+|+...|-. +...+...++.+.|++.++.++..+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 446777788899999998866544432344444443 4445556788888888888888776 3356667777777 678
Q ss_pred CCHHHHHHHHcccCC--CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043362 96 GSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 96 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776533 345667778888888888888888888876532 34566677777788888888888888888
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
+.++.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 888864 3357777888888888888887666665543 3466777788888888888888888888877642 4466
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 250 TAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 250 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
.....+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 677777788888888888887776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-11 Score=109.15 Aligned_cols=353 Identities=19% Similarity=0.243 Sum_probs=194.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHH--hhcCCCchHH-HHHHHHHHHhCCCCChhHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI--CVDPGYLWLG-MCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 87 (516)
.+++=|.|+.. ...|...++.-+|+.|...|++.....-..++.. |-...+..-+ .+.|-.|.+.| ..+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 35666777754 4568899999999999999987776655555443 2233333222 22333343333 2222222
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
|.|++.+ -+|+..++ ...++.+||.+.++--..+.|.+++++-.+...+.+..+|+.++.+-+- ..+
T Consensus 191 ------K~G~vAd--L~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 2344333 33443333 3356666777777766667777777666666566666677766655432 223
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHh----cCC----CCCHhHHHHHHHHHHhcCCHHH-HHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD----GMP----RKTVVSWTAIIGGYGIHGHGEV-AVQLFD 238 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 238 (516)
.++..+|....+.||..++|+++++.++.|+++.|.+.+- +|. +|...+|..+|..+.+.++..+ |..+..
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 5666666666667777777777777777776665544332 332 4566666666666666666533 333333
Q ss_pred HHHH----cCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC---CCCC---HHHHHHHHHHHHhcCCHHHH
Q 043362 239 EMLK----SGIRP----DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG---LQPG---PEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 239 ~m~~----~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A 304 (516)
++.. ...+| |..-|...+..|.+..+.+.|.++..-+....+ +.|+ ..-|..+..+.+....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 11222 234455666666666666666666655542111 1122 12345555666666666666
Q ss_pred HHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------------------cCCC-----------
Q 043362 305 LELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIK---------------------LEPM----------- 349 (516)
Q Consensus 305 ~~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------------------~~p~----------- 349 (516)
.+.++.|. .-|+..+..-++.+....+.++---+++..+.. ..|.
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 66666654 224444444444444444433332222222211 0111
Q ss_pred -----------------------CccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 350 -----------------------NTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 350 -----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+......+-.+.+.|+.++|.+++....+.
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 1233455666788999999999999988644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-11 Score=121.07 Aligned_cols=368 Identities=16% Similarity=0.091 Sum_probs=264.1
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCC--CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVE--INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGN 86 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 86 (516)
..|++.-|.|..-|...|+++.++.+...+...... .-..+|-.+.+++-..|++++|...|....+..-..-+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 357788888999999999999999999988765311 123457788899999999999999998887764222234456
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNG----LATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
-|..+|.+.|+++.+...|+.+.+.. ..+...|...|+..+ ..+.|..++.+..+. .+.|...|..+...+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH
Confidence 78899999999999999999986533 467777777777775 456677777766654 2446777877777665
Q ss_pred hcCChHHHHHHHHHHH----HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------CH------hHHHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQ----ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK-------TV------VSWTAIIG 222 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~------~~~~~li~ 222 (516)
... ...+..++..+. ..+-++.+.+.|.+...+...|++++|...|...... |. .+--.+..
T Consensus 426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 543 333366665544 4555678889999999999999999999999876422 22 12223455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
.+-..++.+.|.+.|+..... .|.-+ .|.-++......+...+|..+++.... ....++..++.+...+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhh
Confidence 566678899999999998874 45533 344444333445778888888888875 4445666666677777777777
Q ss_pred HHHHHHHHhcC----CCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 302 NEALELIESML----VEPDGAVWGALLGACK------------IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 302 ~~A~~~~~~m~----~~p~~~~~~~ll~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
..|.+-|+.+. ..+|..+.-+|.+.|. ..+..+.|+++|.++++.+|.|..+-+.++-+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 77777444433 3456666666666553 2245678888888888888888888888888888899
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043362 366 NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 366 ~~~~a~~~~~~m~~~~~ 382 (516)
++.+|..+|..+++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999988887543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-11 Score=120.63 Aligned_cols=292 Identities=12% Similarity=0.005 Sum_probs=211.7
Q ss_pred HHHHHHHHH--hCCCchHHHHHHHHhHHCCCCCChh-hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 15 YNALISGYV--LNSLVSEAVSLFGKMREQGVEINSV-TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 15 ~n~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
+..+..+.. ..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+..+.+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 444555554 479999999999888765 45543 3344456677889999999999998876423333455556888
Q ss_pred HHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChH
Q 043362 92 YVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC---AHLGAHS 165 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~ 165 (516)
+...|+++.|...++.+.+. +..++..+...|.+.|++++|.+++..+.+.++.+..........+. ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998754 34678899999999999999999999999987543332212112222 2222333
Q ss_pred HHHHHHHHHHHcC---CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhH---HHHHHHHHHhcCCHHHHHHHH
Q 043362 166 VGLEVEQQIQANG---FGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVS---WTAIIGGYGIHGHGEVAVQLF 237 (516)
Q Consensus 166 ~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~~ 237 (516)
.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3334555554432 124788999999999999999999999998864 33321 122222334457888999999
Q ss_pred HHHHHcCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043362 238 DEMLKSGIRPDG---TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311 (516)
Q Consensus 238 ~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 311 (516)
++..+. .|+. ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888774 4444 45568889999999999999999953322 55899999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-11 Score=116.33 Aligned_cols=275 Identities=12% Similarity=0.092 Sum_probs=213.5
Q ss_pred cCCHHHHHHHHcccCCCC--c-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKG--L-ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV--GVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 169 (516)
.|+++.|++.+...++.. . ..|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998876542 2 34444445558999999999999999874 56654333 33567889999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-----------hHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-----------VSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999876 55788899999999999999999999988874321 133344444444555666777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-
Q 043362 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD- 316 (516)
Q Consensus 239 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~- 316 (516)
.+.+. .+.+......+..++...|+.++|..++.+..+. .|+.... ++.+....++.+++.+.+++.. ..|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76443 3457778889999999999999999999998853 5555322 2233335599999999998876 4564
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.....++...|...+++++|...|+++.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66788889999999999999999999999999764 678999999999999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-12 Score=123.88 Aligned_cols=276 Identities=13% Similarity=0.067 Sum_probs=216.3
Q ss_pred CHHHHHHHHcccCCC--Cc-hHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043362 97 SVDYGRKLFDQVPEK--GL-ITWNAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 97 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 171 (516)
+..+|...|..+++. |. .....+..+|...+++++|.++|+.+.+.. ..-+...|++++-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457889999887643 33 445567889999999999999999998742 112567888877654321 222222
Q ss_pred H-HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 172 Q-QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 172 ~-~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
. .+++. -+..+.+|-++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22332 2456889999999999999999999999998754 456788888888889999999999998765 333
Q ss_pred C-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHH
Q 043362 248 D-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGAL 323 (516)
Q Consensus 248 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 323 (516)
. -..|..+...|.+.++++.|+-.|+++. .+.| +.....++...+.+.|+.|+|+++++++. .+| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 3456678889999999999999999998 4566 55667778889999999999999999986 344 45444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+..+...+++++|.+.++++.++.|++...|..++.+|.+.|+.+.|..-|..+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 56677789999999999999999999999999999999999999999999988866443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-10 Score=109.28 Aligned_cols=369 Identities=12% Similarity=0.026 Sum_probs=289.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMY 92 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 92 (516)
.+|+.-.+.|.+.+.++-|..+|...++. .+-+...|......=-..|..+.-..+++.++..- +.....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 56777777888888888888888887765 23344556555555555677788888888877763 44556677777777
Q ss_pred HHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043362 93 VKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 93 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 169 (516)
-..|++..|+.++++.-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..---+++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 7889999998888776543 3467888888888899999999999888764 5676666655555566788899999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
+++..++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-.|..+|++....+ +
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 99888886 455567888888999999999999998877654 2 45577777777778889999999999887764 4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043362 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326 (516)
Q Consensus 247 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 326 (516)
-|...|...+..-.+.|+.+.|..+..+..+ .++.+...|..-|.+..+.++-....+.+++.. .|..+.-++...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~l 826 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKL 826 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHH
Confidence 4678888999999999999999999988886 456677888888888888888777777777764 566667777788
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEE
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 393 (516)
+....+++.|...|.+.++.+|++..+|..+...+...|.-++-.+++.+-... .|.-|..|..+
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 888899999999999999999999999999999999999999999999877643 34456677544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-12 Score=123.23 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=186.4
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC------CchHHHHHHHHHHHcCChhHHHHHH
Q 043362 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK------GLITWNAMISGYAQNGLATHVLELY 136 (516)
Q Consensus 63 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 136 (516)
..+|...|+.+.. ...-..++...+..+|...+++++|+++|+.+.+. +...|.+.+--..+ +-++..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 3456666666322 22334466666667777777777777777766543 23455555433221 1122222
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh
Q 043362 137 -REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215 (516)
Q Consensus 137 -~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 215 (516)
+.+... -+-.+.||..+.+.|+-.++.+.|.+.|++.++.. +....+|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 222222 13345677777777777777777777777776643 225667777777777777788888888877766665
Q ss_pred HHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 043362 216 SWTA---IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCM 291 (516)
Q Consensus 216 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 291 (516)
.||+ +...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|+++++++.. +.| |+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 5554 5667888888888888888887743 22455666777778888899999999988873 344 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 292 VDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+..+...+++++|+..++++. .-|+ ..++..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 667778899999999999887 4465 67777788889999999999999999999998643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-10 Score=118.80 Aligned_cols=369 Identities=14% Similarity=0.086 Sum_probs=242.7
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCh-hhHHHHHH---HhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINS-VTMLCLLP---ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
.++.+.|+.+.|+..|.+.++. .|+. .++..|.- .+-....+..|.+.+...-... ..++.+.+.|.+.|.-.
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFK 283 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhc
Confidence 3455666666666666666654 2322 22222211 1112234455666665555554 56777788888888888
Q ss_pred CCHHHHHHHHcccCCCC------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHH
Q 043362 96 GSVDYGRKLFDQVPEKG------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV--TFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 167 (516)
|++..+..+...+.... ..+|.-+.++|-..|++++|...|.+..+. .||.+ .+..+...+...|+++.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHH
Confidence 88888887776665433 145777888888888888888888776654 34443 344566778888888888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCC----CHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCG----NLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+..++ |...|-.+...+-+. +...++..|...
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 88888887763 456677777777777765 456666666666543 555666665555544 344446666543
Q ss_pred ----HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHH
Q 043362 241 ----LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--LQPGP------EHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 241 ----~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
...+-.+.....|.+.......|++++|...|........ ..++. .+--.+...+...++.+.|.+.+
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445556777888888888888999999888888775311 12222 22334556666777888888888
Q ss_pred HhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCC
Q 043362 309 ESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386 (516)
Q Consensus 309 ~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 386 (516)
..+. ..|. +..|.-++......++..+|...++.++..+..++.++..+++.|.+...|..|.+-|..+.+.-...+.
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 8876 4465 4455555544455678888999999999888888888999998999988999998888777665444434
Q ss_pred ceeEEEECC
Q 043362 387 GYSYVELKG 395 (516)
Q Consensus 387 ~~s~i~~~~ 395 (516)
.+|.|.+++
T Consensus 600 ~YsliaLGN 608 (1018)
T KOG2002|consen 600 AYSLIALGN 608 (1018)
T ss_pred hhHHHHhhH
Confidence 455544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-11 Score=105.69 Aligned_cols=223 Identities=11% Similarity=0.125 Sum_probs=125.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN----PFLNNALINMYA 194 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~ 194 (516)
|..-|...|-++.|..+|..+.+.+ .--......++..|-...++++|+.+-.++.+.+-.+. ...|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 3344444444444444444444322 11122333444444444444444444444444332221 123444555555
Q ss_pred hCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 195 RCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
...+.+.|..++.+..+. .+..--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556666666666655432 22233334556777788888888888777765444455667777888888888888888
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh
Q 043362 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE-SMLVEPDGAVWGALLGACKI---HKNVELAELAFGKVIK 345 (516)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~ 345 (516)
+.++.+. .++...-..+.+.-....-.+.|...+. .+..+|+...+..|+..-.. .|...+...+++.|..
T Consensus 272 L~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 8887754 3444444555555555555566665544 44467888888888876543 3345556666666654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-11 Score=109.14 Aligned_cols=220 Identities=12% Similarity=0.119 Sum_probs=164.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH------------------------------------HhCCCHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY------------------------------------ARCGNLKK 201 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y------------------------------------~~~g~~~~ 201 (516)
+.+.|+++.|.+++.-..+..-..-...-+.|-..+ ...|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 567799999999988776643222122222111111 13478888
Q ss_pred HHHHHhcCCCCCHhHHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 202 ARAIFDGMPRKTVVSWTAIIG---GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 202 A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|.+.|++....|...-.++.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 888888887777665444433 466789999999999887653 344667788888899999999999999988763
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-L-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 279 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
-++.|+.+...|.+.|-+.|+-.+|.+..-.- . +.-+..+..-|..-|....-+++|+..|+++.-+.|+....-..
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 45558899999999999999999999875443 3 33467776667788888888999999999999899977655556
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.++.+.|+++.|..+++.+..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh
Confidence 667778899999999999988653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-10 Score=104.82 Aligned_cols=326 Identities=14% Similarity=0.098 Sum_probs=227.8
Q ss_pred CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHH
Q 043362 45 INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGY 123 (516)
Q Consensus 45 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~ 123 (516)
-|.+.+-.-...+.+.|....|...+...+..- +..|.+-+...--.-+.+.+..+-...+..+. ..=-.+..+|
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 343333333333445555666666655554321 22333333333334455555554444443321 1111244556
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhCCCHH-
Q 043362 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--GSNPFLNNALINMYARCGNLK- 200 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~- 200 (516)
....+.++++.-.......|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.-..+..+.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 66667788888888888888766655555555666678899999999999988631 134667777663332222222
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 201 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
-|..+++ +.+=.+.|...+.+-|+-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-++++.+
T Consensus 318 LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--- 392 (559)
T KOG1155|consen 318 LAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--- 392 (559)
T ss_pred HHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---
Confidence 2233322 222234566667777888899999999999998853 22356777888899999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 281 LQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 281 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+.| |-..|-.|.++|.-.+...-|+-+|++.. .+| |...|.+|...|.+.++.++|++.|.++...+-.+...+..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 344 77889999999999999999999999887 566 799999999999999999999999999999887677899999
Q ss_pred hhHHHHcCChhHHHHHHHHHHh
Q 043362 358 SNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 358 ~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+.+|.+.++.++|.+.+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999987765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-10 Score=108.40 Aligned_cols=355 Identities=14% Similarity=0.076 Sum_probs=244.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEIN-SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD-FSVGNCLMTMY 92 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~ 92 (516)
+-+.-.-|-++|.+++|++.|.+..+. .|| +.-|...-.+|...|++++..+--...++.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 344556788899999999999999986 788 6667777778888999998887776666553 33 23444455566
Q ss_pred HHcCCHHHHHH----------------------HHcc---------cCC-CC-chHHHHHHHHHHH--------------
Q 043362 93 VKCGSVDYGRK----------------------LFDQ---------VPE-KG-LITWNAMISGYAQ-------------- 125 (516)
Q Consensus 93 ~~~g~~~~A~~----------------------~f~~---------~~~-~~-~~~~~~li~~~~~-------------- 125 (516)
-..|++++|+. ++.. +.+ +. +..-.+.|..|..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 66666665542 1111 010 00 1111112222211
Q ss_pred ---------------cC---ChhHHHHHHHHHHH---CCCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 126 ---------------NG---LATHVLELYREMKS---LGVCPD---------AVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 126 ---------------~g---~~~~A~~~~~~m~~---~g~~p~---------~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
.+ .+.+|.+.+.+-.. .....+ ..+......-+.-.|+.-.+.+-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 11 12222222222110 000111 1111111122334578888889999998
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTA 251 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 251 (516)
+.... +...|--+..+|....+.++..+.|++..+ .|..+|-.-.+.+.-.+++++|..=|++.... .| +...
T Consensus 354 ~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYA 430 (606)
T ss_pred hcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHH
Confidence 87533 333477777889999999999999988763 36677877777778888999999999998884 44 4567
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---------HHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD---------GAVWG 321 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---------~~~~~ 321 (516)
|..+..+.-+.+.++++...|+...++ ++..+++|+.....+...+++++|.+.|+... .+|+ +.+--
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 777777778899999999999999974 56678899999999999999999999999875 3443 22223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+++..- -.+++..|+.+++++.+++|....+|..|+..-.+.|+.++|.++|++-..
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333322 348999999999999999999999999999999999999999999997643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-10 Score=114.21 Aligned_cols=355 Identities=13% Similarity=0.115 Sum_probs=263.0
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 043362 22 YVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG 101 (516)
Q Consensus 22 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 101 (516)
|++ |+.++|..++.+..+.. +.+...|.+|...+-+.|+.+++...+-.+.-.. +.|...|-.+.....+.|.+++|
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 444 99999999999999875 6677889999999999999999987765554444 66778999999999999999999
Q ss_pred HHHHcccCCCCchHH---HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 102 RKLFDQVPEKGLITW---NAMISGYAQNGLATHVLELYREMKSLGVCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 102 ~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
.-.|.+..+.++.-| ---+..|.+.|+...|++.|.++.....+.|.. +.-.++..+...++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999887665333 334678899999999999999998863222222 2333455666677778888888777
Q ss_pred HHc-CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC----CCH----------------------hHHH----HHHHH
Q 043362 175 QAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMPR----KTV----------------------VSWT----AIIGG 223 (516)
Q Consensus 175 ~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----------------------~~~~----~li~~ 223 (516)
... +-..+...++.++.+|.+...++.|......+.. +|. .+|+ .+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 662 2234556788899999999999988777654432 111 1111 12233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRP--DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
+......+....+.....+..+.| +...|.-+..++.+.|.+.+|..+|..+... ...-+..+|-.+...|-..|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhH
Confidence 444444444444555555555444 4567889999999999999999999999865 3333577999999999999999
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---------CCCccchHHHhhHHHHcCChhHH
Q 043362 302 NEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLE---------PMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
++|.+.++... ..|+ ...--+|-..+.+.|+.++|.+.++.+..-+ +++..........|...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999886 5564 5566667788899999999999999876433 12233455677888999999988
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
..+-..|.+.
T Consensus 546 i~t~~~Lv~~ 555 (895)
T KOG2076|consen 546 INTASTLVDD 555 (895)
T ss_pred HHHHHHHHHH
Confidence 7777777653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-09 Score=103.74 Aligned_cols=353 Identities=12% Similarity=0.006 Sum_probs=248.7
Q ss_pred CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 043362 25 NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL 104 (516)
Q Consensus 25 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 104 (516)
....+.|.-++.+..+- -|.. .-|.-++++...++.|+.++....+. ++.+..+|.+-...=-..|+.+...++
T Consensus 389 lE~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666665543 1221 12334455556666666666665543 455666666555555566666665555
Q ss_pred Hccc---------------------------------------CCCC------chHHHHHHHHHHHcCChhHHHHHHHHH
Q 043362 105 FDQV---------------------------------------PEKG------LITWNAMISGYAQNGLATHVLELYREM 139 (516)
Q Consensus 105 f~~~---------------------------------------~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 139 (516)
.++- ..-+ -.+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 5432 1111 135666666667777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhH
Q 043362 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVS 216 (516)
Q Consensus 140 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~ 216 (516)
.+. ++-+...|.-....--.-|..+.-..++++++..- +.....|-....-+...|+...|+.++...-+ .+...
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 654 23344555555555555677777777777777763 44556666667777778898888888776542 35678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 296 (516)
|-+-+.....+.+++.|..+|.+... ..|+...|.--+..---.++.++|.++++...+. ++.-...|..+.+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 88888888899999999999998877 4677777776666666788999999999998864 3334567888899999
Q ss_pred hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 297 RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
+.++++.|.+.|..-. .-| .+..|-.|...--+.|++-.|..++++..-.+|++...|...+.+-.+.|+.++|..+.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888765 346 47888888888888899999999999999999999999999999999999999999988
Q ss_pred HHHHhCCCCCCCceeEE
Q 043362 375 MMMRERRLKKDPGYSYV 391 (516)
Q Consensus 375 ~~m~~~~~~~~~~~s~i 391 (516)
.+..+.- |..+.-|.
T Consensus 777 akALQec--p~sg~LWa 791 (913)
T KOG0495|consen 777 AKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHHHhC--CccchhHH
Confidence 8776542 33444553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=90.42 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 59 (516)
||+++||+||++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-10 Score=100.49 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=90.5
Q ss_pred CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHHcCCHHHHH
Q 043362 26 SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL---DFSVGNCLMTMYVKCGSVDYGR 102 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~ 102 (516)
.++++|+++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|+.+|+.++++.--+ .....-.|..-|.+.|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34445555555554421 1122223334444444455555555555444431000 0112233444444455555555
Q ss_pred HHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 103 KLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 103 ~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
.+|..+.+.+. .+.-.|+..|.+..++++|+++-+++.+.+-++..+ .|.-+...+....+.+.|+.++.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55554444221 233344445555555555555544444433222221 12223333333344444555554444
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV----VSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|. .+...+..+|.+.|+.++....+.++.+
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 432 12233333344444455555555555554443332 1233444445555555555555544444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-09 Score=98.91 Aligned_cols=277 Identities=13% Similarity=0.040 Sum_probs=175.0
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC--C--chHHHHHHHHHHHcCChhHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--G--LITWNAMISGYAQNGLATHVLELY 136 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~ 136 (516)
|++.+|++....-.+.+ +.....|..-..+--..|+.+.|-.++.+..+. | ....-+........|++..|..-.
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55666665555544443 111222333334444556666666665555443 2 234445555555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP-------FLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 137 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
.++.+.+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6555543 223444555556666666666666666666665544332 34566666555555555555666666
Q ss_pred CC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH
Q 043362 210 PR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286 (516)
Q Consensus 210 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 286 (516)
+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+.. .+-.+.+.++.+.-.+..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 63 356666677778888888888888888888877666622 23345667777777777777666544444 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
.+.+|...|.+.+.+.+|...|+... ..|+..+|+-+..++.+.|+.++|.+..++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77788888888888888888888665 668888888888888888888888888887764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-10 Score=106.85 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=157.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 258 (516)
....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677778888888888888888876542 356677788888888999999999998888753 3355667777888
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
+...|++++|.+.+...............+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999887642222345567778888999999999999998875 334 467788888889999999999
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...+++..+..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888878888889999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=102.05 Aligned_cols=285 Identities=11% Similarity=0.023 Sum_probs=163.9
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcC
Q 043362 54 LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNG 127 (516)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g 127 (516)
..++......+++.+-.+.....|++.+...-+....++-...++++|+.+|+.+.+.|+ .+|...+ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 345555556667777777777777766666666666666667777777777777765543 3444433 33333
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 128 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
+..-+.-.-....-...+ +.|..++.+-|+-.++.+.|...|++.++.+ +....+|+.+.+-|....+...|.+-|+
T Consensus 312 ~skLs~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222211110111111122 2455666666666666777777777776654 3345566666666777777777766666
Q ss_pred cCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 043362 208 GMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284 (516)
Q Consensus 208 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 284 (516)
... .+|-..|-.+.++|.-.+.+.-|+-.|++.... -+-|...|.+|...|.+.++.++|+..|.+...- -..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccc
Confidence 554 335566666777777777777777777766663 1334566667777777777777777777666642 2224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML--------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
...+..|.++|.+.++.++|...|++-. ..|. ....--|..-+.+.+++++|.....+....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4566666777777777777666665432 1121 111111334455666666666555544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-10 Score=111.21 Aligned_cols=232 Identities=16% Similarity=0.148 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCch-HHHHHHHHHHHhCCCHHHHHHHHhcCCC--------C
Q 043362 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-----GF-GSNP-FLNNALINMYARCGNLKKARAIFDGMPR--------K 212 (516)
Q Consensus 148 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~ 212 (516)
..|+..+...|...|+++.|..++++.++. |. .|.+ ...+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 457777889999999999999999988774 21 2222 2345577889999999999999987742 1
Q ss_pred ---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcC--
Q 043362 213 ---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-----SGIR-PDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYG-- 280 (516)
Q Consensus 213 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 280 (516)
-..+++.|..+|.+.|++++|...+++..+ .|.. |.. ..++.+...|...+.+++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677788899999999998888877653 1222 222 3466777889999999999999998776544
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-
Q 043362 281 LQPG----PEHYTCMVDLLGRAGQLNEALELIESML-------V--EP-DGAVWGALLGACKIHKNVELAELAFGKVIK- 345 (516)
Q Consensus 281 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~--~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~- 345 (516)
+.++ ..+++.|...|...|++++|.++++++. . .+ .....+.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4679999999999999999999999875 1 22 256677888999999999999999998765
Q ss_pred ---cCCCC---ccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 346 ---LEPMN---TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 346 ---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+|++ ..+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444 45688999999999999999999988763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-08 Score=94.97 Aligned_cols=375 Identities=8% Similarity=0.063 Sum_probs=267.7
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
.+++..|-.-+..=.++..+..|..++++....-...|..-|. -+-.=-..|++..|+++|+.-..- .|+...|++.
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sf 180 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSF 180 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 4677778778888888888888888888887652222332222 222223468899999999887654 7999999999
Q ss_pred HHHHHHcCCHHHHHHHHccc--CCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCh
Q 043362 89 MTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GV-CPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~g~~ 164 (516)
|+.=.+-..++.|..++++. ..|++.+|--...-=.++|+...|..+|....+. |- .-+...|++...--.+...+
T Consensus 181 I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885 4678888888888888889999999998887653 10 11222334444434456678
Q ss_pred HHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHHHHHHHH--------hcCCCC---CHhHHHHHHHHHHhcCCHH
Q 043362 165 SVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLKKARAIF--------DGMPRK---TVVSWTAIIGGYGIHGHGE 231 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~--------~~m~~~---~~~~~~~li~~~~~~g~~~ 231 (516)
+.|.-+|+..+.. ++.+ ...|..+...=-+-|+.....+.. +.+... |-.+|--.+..-...|+.+
T Consensus 261 ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 261 ERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 8888888888875 2333 455666665555556654443332 222222 5567777777778889999
Q ss_pred HHHHHHHHHHHcCCCCCHH-------HHHHH---HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH----Hh
Q 043362 232 VAVQLFDEMLKSGIRPDGT-------AFVSV---LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL----GR 297 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~-------t~~~l---l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~ 297 (516)
...++|++.... ++|-.. .|.-+ +-.-....+++.+.++++..++ -++....|+.-+--+| .+
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHH
Confidence 999999998875 566321 12111 1122357889999999998885 3444555655554444 47
Q ss_pred cCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 298 AGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
+-++..|.+++.... .-|-..++...|..-.+.++++....++++.++..|.+-.+|.-.+..-...|+++.|..+|..
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 889999999998876 5688889988888888999999999999999999999988999999988999999999999998
Q ss_pred HHhCCCCCCCceeE
Q 043362 377 MRERRLKKDPGYSY 390 (516)
Q Consensus 377 m~~~~~~~~~~~s~ 390 (516)
..+....--|..-|
T Consensus 497 Ai~qp~ldmpellw 510 (677)
T KOG1915|consen 497 AISQPALDMPELLW 510 (677)
T ss_pred HhcCcccccHHHHH
Confidence 88765443444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-12 Score=83.37 Aligned_cols=50 Identities=34% Similarity=0.602 Sum_probs=46.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043362 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261 (516)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 261 (516)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-09 Score=98.00 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=210.5
Q ss_pred cCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 171 (516)
.|++.+|+++..+-.+.. +..|..-+.+.-+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 699999999998765433 35666667778889999999999999877532444555666667788999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-----------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-----------VSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 172 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
..+.+.+ +.++.+......+|.+.|++.....+...+.+... .+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998876 45678889999999999999999999998875422 46777777666666666655566665
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGA 318 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~ 318 (516)
... .+-++..-.+++.-+.+.|+.++|.++.....++ +..|+.. .++ ...+-++.+.-.+..+.-. ..| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 443 4556667778888899999999999999998876 5555511 111 1234455444444433322 123 468
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.+|...|.+++.+.+|...|+..++..|.. ..|..++.++.+.|+..+|.+++++..-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88999999999999999999999999988854 6899999999999999999999987763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-09 Score=110.58 Aligned_cols=257 Identities=14% Similarity=0.029 Sum_probs=185.6
Q ss_pred CchHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 043362 112 GLITWNAMISGYAQ-----NGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAH---------LGAHSVGLEVEQQIQA 176 (516)
Q Consensus 112 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 176 (516)
+..+|...+.+-.. .+..++|+++|++..+. .|+ ...+..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34556666665322 13467899999998875 454 4455555444432 2447899999999998
Q ss_pred cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH
Q 043362 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG-TAF 252 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 252 (516)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45678888899999999999999999998753 3 5668888999999999999999999999885 4443 233
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKI 329 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~ 329 (516)
..++..+...|++++|...+.++.+. ..| ++..+..+...|...|++++|...+.++. ..|+ ...++.+...|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34455566789999999999998754 234 45567778888999999999999998875 3454 4445555566677
Q ss_pred cCCHHHHHHHHHHHhhcC---CCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 330 HKNVELAELAFGKVIKLE---PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.| +.|...++++.+.. |.++ ..+...|+-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 76 47777777776633 4433 3366777778888887777 7776653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=110.20 Aligned_cols=82 Identities=23% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 043362 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291 (516)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 291 (516)
++..++.+.+..-.-.|+.+.|..++.+|.+.|++.+..-|-.|+-+ .++...+..++..|.+. |+.|+.+|+.-.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 45555555555555556666666666666665555555555555433 44555555555555543 555555555544
Q ss_pred HHHHHh
Q 043362 292 VDLLGR 297 (516)
Q Consensus 292 i~~~~~ 297 (516)
+-.+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 433333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-09 Score=103.03 Aligned_cols=257 Identities=13% Similarity=0.048 Sum_probs=207.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043362 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195 (516)
Q Consensus 116 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 195 (516)
.-.-..-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.++++. .|....+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 333445567789999999999998876 3556566666667888888877777776677765 46678889999999999
Q ss_pred CCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 196 CGNLKKARAIFDGMPRKT---VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-....+.-+..-|.+.++.+.|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999876443 468999999999999999999999887663 2222333444556788899999999999
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 273 YGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--------VEP-DGAVWGALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 273 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
.... ++.| |+.+.+-+.-.....+.+.+|...|+... ..+ -..+++.|..+|++.+.+++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9987 5555 67777777777777889999999988764 112 245688889999999999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+.+.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999998775
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=98.90 Aligned_cols=194 Identities=14% Similarity=0.044 Sum_probs=121.3
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHH
Q 043362 47 SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGY 123 (516)
Q Consensus 47 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 123 (516)
...+..+...+...|++++|.+.++.+++.. +.+...+..+...|...|++++|.+.|++..+. +...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555666666666666666666666553 344556666666666777777777666655432 234566666666
Q ss_pred HHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 202 (516)
...|++++|.+.|++.......| ....+..+..++...|++++|...+.+..+.. +.+...+..+...+.+.|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766532112 23345555666677777777777777776653 23455666677777777777777
Q ss_pred HHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 203 RAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 203 ~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.+.+++.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77776543 23455555666677777777777777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-09 Score=109.23 Aligned_cols=258 Identities=9% Similarity=-0.044 Sum_probs=167.9
Q ss_pred CChhhHHHHHHHhh-----cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH---------cCCHHHHHHHHcccCC
Q 043362 45 INSVTMLCLLPICV-----DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK---------CGSVDYGRKLFDQVPE 110 (516)
Q Consensus 45 p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~---------~g~~~~A~~~f~~~~~ 110 (516)
.+...|...+.+-. ..+++++|.+.++..++.. +.+...+..+..+|.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44444545554431 1234578888888888764 3345566666555442 2447888888888765
Q ss_pred CC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHH
Q 043362 111 KG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187 (516)
Q Consensus 111 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 187 (516)
.+ ..+|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++++.+.... +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 43 4677788888888899999999998888753 334556777778888889999999999888886422 223333
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC---C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcc
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR---K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA-FVSVLSACSHA 262 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~ 262 (516)
.++..+...|++++|.+.+++... | +...+..+..+|...|+.++|...++++... .|+..+ .+.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 344456667888889888877632 2 4556777778888899999999988887653 444433 33444455666
Q ss_pred CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
| +.+...++.+.+...-.|....+ +-..|.-.|+-+.+... +++.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 6 47777777766543333333333 33344555666666655 6664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-10 Score=112.24 Aligned_cols=258 Identities=14% Similarity=0.181 Sum_probs=190.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC
Q 043362 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213 (516)
Q Consensus 134 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 213 (516)
.++..+...|+.|+.+||..++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999998888899999999999999999887765 678
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
..+|+.+..+|.++|+... ++..++ -+..+...++..|....-..++..+.-..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999766 333333 2233455666677766666666655433345556543 455
Q ss_pred HHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 294 LLGRAGQLNEALELIESMLVE-PDGAVWGALLGACKIHK-NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.+.-.|.++.+.+++..+|.. .+. .....+.-+.... .+++-....+...+ .| ++.+|..+...-..+|+.+.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHH
Confidence 566778899999999888821 111 1111244444333 33443344444444 44 5578999999999999999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCCCCC
Q 043362 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432 (516)
Q Consensus 372 ~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~ 432 (516)
.++..|+++|++-.+.+.|-.+-+. . ....++.+.+-|++.|+.|+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g~--------~-------~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLGI--------N-------AAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhcC--------c-------cchHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999665431 1 12234667889999999998
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-09 Score=99.41 Aligned_cols=282 Identities=11% Similarity=0.062 Sum_probs=167.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
-.-.+-+-..+++.+...+++...+.. ++....+..-|..+...|+..+-..+-..+++.- |....+|-++.--|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 334445555677777777777776653 5555555555556666666666555555555553 55566777777777777
Q ss_pred CCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043362 96 GSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 96 g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
|...+|++.|.+...-|. ..|-.+...|+-.|.-++|+..+...-+. ++-....+--+.--|.+.+++..|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 777777777777655443 57777777777777777777777665442 11111222233444666777777777777
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043362 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 252 (516)
+..... |.|+.+.+-+.-+....+.+.+|..+|+.... ..+..... ...-..++
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNE-KIFWEPTL 458 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhcccc-ccchhHHH
Confidence 776653 45666666666666666666666666654321 00110010 00123455
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACK 328 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~ 328 (516)
+.|..+|.+.+.+++|+..+++... -.+.+..++.++.-.|...|+++.|.+.|.+.. .+|+..+...++..+.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 6666666666666666666666653 223356666666666666666666666666655 5566655555555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-08 Score=90.27 Aligned_cols=285 Identities=10% Similarity=-0.016 Sum_probs=204.8
Q ss_pred CchHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHH---HHHHHHHcCChhHHHHHHH
Q 043362 62 YLWLGMCCHCICVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA---MISGYAQNGLATHVLELYR 137 (516)
Q Consensus 62 ~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~ 137 (516)
+-..+.+.+..+... -++.|+....++.+.|...|+.++|...|++....|+.+..+ ..-.+.+.|+++....+..
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 333344444433332 357788889999999999999999999999887666533322 2333567888888888777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC--C-CCH
Q 043362 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--R-KTV 214 (516)
Q Consensus 138 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~ 214 (516)
.+.... +-+...|..-+......++++.|..+-++.++.. +.++..+-.-...+...|+.++|.-.|+... . -+.
T Consensus 291 ~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 291 YLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred HHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 776531 2233334444444556778888888888888764 3345555555666778899999999998654 3 378
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cCChHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL-SACSH-AGLTDKGLEYFYGMKNKYGLQPG-PEHYTCM 291 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 291 (516)
.+|.-++.+|...|++.+|..+-+...+. .+.+..++..+. ..|.. ...-++|..++++-. .+.|+ ....+.+
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLI 444 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHH
Confidence 89999999999999999998877765543 344555554442 23322 233478888888776 44665 3455677
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 292 VDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
...+...|..+++..++++.. ..||....+.|...+...+.+++|...|..++.++|++..
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 788889999999999999876 5689999999999999999999999999999999998763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=96.39 Aligned_cols=225 Identities=16% Similarity=0.091 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcC
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-TVVSWTAIIGGYGIHG 228 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g 228 (516)
+.+..+|.+.|.+.+|...++..++.. |-+.+|-.|-..|.+..+.+.|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 567788999999999999999988864 4566777888999999999999999988764 3 4444555777888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
+.++|.++|+...+.. +.+......+...|.-.++++.|..+++++.+. |+. +++.|+.+.-.+.-.+++|-++--|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999988852 445666777777888899999999999999975 654 7888888888888899999999988
Q ss_pred HhcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 309 ESML---VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 309 ~~m~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
++.. ..|+ ..+|-.|.......||+..|.+.|+-.+..+|++..+++.|+-.-.+.|+.++|..++....+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8775 3354 67898898888899999999999999999999999999999999999999999999999887653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-08 Score=99.10 Aligned_cols=227 Identities=16% Similarity=0.131 Sum_probs=151.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHH-----cC--CCCchH
Q 043362 119 MISGYAQNGLATHVLELYREMKSL-----G-VCPDAVT-FVGVLSSCAHLGAHSVGLEVEQQIQA-----NG--FGSNPF 184 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g--~~~~~~ 184 (516)
+...|...|+++.|..+++...+. | ..|...+ ...+...|...+.+++|..+|+.+.. .| .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555666666666666666554432 1 1222222 22345556666777777777666654 12 112234
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCC----------CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMP----------RKTVV-SWTAIIGGYGIHGHGEVAVQLFDEMLKS---GIRPD-- 248 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-- 248 (516)
+++.|..+|.+.|++++|...+++.. .+.+. ..+.++..+...+++++|..+++...+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 55666677777787777766665442 11222 3555677788888899998888875541 12223
Q ss_pred --HHHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------
Q 043362 249 --GTAFVSVLSACSHAGLTDKGLEYFYGMKNKY----G-LQP-GPEHYTCMVDLLGRAGQLNEALELIESML-------- 312 (516)
Q Consensus 249 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------- 312 (516)
..+++.+...|.+.|++++|.++|+.+.... + ..+ ....++.|...|.+.+++++|.++|.+..
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 3578899999999999999999999887652 1 122 24567888899999999999998888754
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 313 VEPD-GAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 313 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3354 67899999999999999999999998874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=95.15 Aligned_cols=229 Identities=15% Similarity=0.133 Sum_probs=195.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
+.|..+|.+.|.+.+|...|+.-.+. .|-..||..+-.+|.+..+...|..++.+-++. ++-|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999988775 577788999999999999999999999998876 456666667778888889
Q ss_pred CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043362 197 GNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273 (516)
Q Consensus 197 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 273 (516)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++...|+. +...|+.+.-.|.-.+.+|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999988764 36667777788899999999999999999999865 67889999999999999999999999
Q ss_pred HhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 274 GMKNKYGLQPG--PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 274 ~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+.... --.|+ ..+|-.|.......|++.-|.+.|+-.. ..| ....++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98864 33344 4678888888888999999999998776 344 4788999998889999999999999999988886
Q ss_pred C
Q 043362 350 N 350 (516)
Q Consensus 350 ~ 350 (516)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 4
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-06 Score=83.18 Aligned_cols=363 Identities=11% Similarity=0.045 Sum_probs=269.5
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
-+-.=-..|++..|.++|++-... .|+...|.+.++.=.+-..++.|+.+++..+-. .|++..|--....=.++|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 333334568999999999988765 899999999999999999999999999988765 6999999999999999999
Q ss_pred HHHHHHHHcccCCC---C---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHH
Q 043362 98 VDYGRKLFDQVPEK---G---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 98 ~~~A~~~f~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~ 169 (516)
+..|..+|+...+. + ...+++...-=.++..++.|.-+|+-.+.. ++-+ ...|......--+-|+......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999876532 1 235555555556678889999898887765 3333 3445544444444555443332
Q ss_pred H--------HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHH--------HHhcC
Q 043362 170 V--------EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGG--------YGIHG 228 (516)
Q Consensus 170 ~--------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~--------~~~~g 228 (516)
. ++..++.+ +.|-.+|--.+..-...|+.+...++|++.... .-..|...|-. =....
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 34444433 567777777888888889999999999987521 11223332221 12467
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC----SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
+.+.+.++|+...+. ++...+||.-+--.| .++.++..|.+++.... |.-|-..++...|..=.+.+.+|..
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 889999999998884 566677877654444 45789999999999998 8899999999999999999999999
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 305 LELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN--TGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 305 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..++++.. ..| +-.+|.-....-...|+.+.|..+|+-++....-+ ...+-..+..-...|.++.|..+++.+.+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999876 556 67889888888889999999999999887643211 123445556667789999999999999876
Q ss_pred CCCCCCceeEEEE
Q 043362 381 RLKKDPGYSYVEL 393 (516)
Q Consensus 381 ~~~~~~~~s~i~~ 393 (516)
.-.. -+||..
T Consensus 537 t~h~---kvWisF 546 (677)
T KOG1915|consen 537 TQHV---KVWISF 546 (677)
T ss_pred cccc---hHHHhH
Confidence 4321 257654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=95.86 Aligned_cols=210 Identities=15% Similarity=0.109 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHHcC-CCCc--hHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANG-FGSN--PFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 236 (516)
..+.+..-+.+++... ..|+ ...|..+...|.+.|++++|...|++..+ .+...|+.+...|...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555565665422 1222 34566677778888888888887776542 3567788888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 043362 237 FDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--V 313 (516)
Q Consensus 237 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 313 (516)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+.. .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8887763 443 556667777777788888888888887753 4432211222223345667888888885543 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 314 EPDGAVWGALLGACKIHKNVELAELAFGKVI-------KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 314 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|+...| .+. ....|+...+ ..++.+. ++.|+...+|..++.+|.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 122 2223444333 2333333 3445556678888888888888888888888877544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-08 Score=90.53 Aligned_cols=216 Identities=13% Similarity=0.011 Sum_probs=139.2
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 127 GLATHVLELYREMKSLG-VCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666431 2222 2345666667777788888888887777764 345677888888888888888888
Q ss_pred HHHhcCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 204 AIFDGMPR--K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 204 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
+.|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88877643 2 4567777888888888888888888888774 44433222222233456778888888866553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH--HHHHHHhcC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 281 LQPGPEHYTCMVDLLGRAGQLNE--ALELIESML-----VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 281 ~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m~-----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..|+...+ .++.. ..|+..+ +.+.+.+.. ..| ....|..+...+...|++++|+..|+++++.+|.+
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 23332222 23332 3444433 332232211 112 24678889999999999999999999999999754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-07 Score=87.00 Aligned_cols=311 Identities=13% Similarity=0.018 Sum_probs=203.5
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHc
Q 043362 51 LCLLPICVDPGYLWLGMCCHCICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQN 126 (516)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~ 126 (516)
-+..+-|-+.+.+++|++.+.+.+.. .|| +..|.....+|...|++++..+--....+-++ -+++--.+++-+.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 33445667888999999999998887 566 77788888999999999888877666655553 3555566677777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHH-cC--CCCchHHHHHHHHHH--
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ--------QIQA-NG--FGSNPFLNNALINMY-- 193 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~-~g--~~~~~~~~~~li~~y-- 193 (516)
|++++|+.=..- .+++..+....-.-.+.+++. .-.+ .+ .-|+....++....+
T Consensus 197 g~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 197 GKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred ccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 777776532221 222222221111111111111 1111 11 112221111111111
Q ss_pred -------------------------HhC-CCHHHHHHHHhcC-------CCCC---------HhHHHHHHHHHHhcCCHH
Q 043362 194 -------------------------ARC-GNLKKARAIFDGM-------PRKT---------VVSWTAIIGGYGIHGHGE 231 (516)
Q Consensus 194 -------------------------~~~-g~~~~A~~~~~~m-------~~~~---------~~~~~~li~~~~~~g~~~ 231 (516)
... ..+..|...+.+- ...+ ..+.+.-..-+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 100 0122222222111 0111 111211222234568888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
.|..-|+........++. .|.-+..+|....+.++..+.|+...+ +.| ++.+|..-.+++.-.+++++|..=|++
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886444333 277778889999999999999999984 444 677888888888888999999999998
Q ss_pred cC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 311 ML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 311 m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.. ..| ++..|-.+..+.-+.+.+++++..|++..+..|..+..|...+.++...+++++|.+.++...+.
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 87 556 46777777777677789999999999999999999999999999999999999999999988753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-06 Score=87.73 Aligned_cols=255 Identities=15% Similarity=0.043 Sum_probs=153.8
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCChhh-HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC--
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINSVT-MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG-- 96 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-- 96 (516)
..+...|++++|++.+..-... -+|..+ +......+.+.|+.++|..++..+++.+ +.|..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 4457889999999999775543 455544 4556677888999999999999999987 556666666666663222
Q ss_pred ---CHHHHHHHHcccCC----------------------------------CCc-hHHHHHHHHHHHcCChhHHHHHHHH
Q 043362 97 ---SVDYGRKLFDQVPE----------------------------------KGL-ITWNAMISGYAQNGLATHVLELYRE 138 (516)
Q Consensus 97 ---~~~~A~~~f~~~~~----------------------------------~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 138 (516)
+.+....+++++.+ +++ .+++.+-..|.......-..+++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 45666666666532 122 2334444444433333333344444
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHH
Q 043362 139 MKSL----G----------VCPDAV--TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202 (516)
Q Consensus 139 m~~~----g----------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 202 (516)
.... + -+|+.. ++..+...|...|++++|.++.+..++.. |..+..|..-...|-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3321 1 123332 33444555667777777777777777753 22356666777777777777777
Q ss_pred HHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHhccCChHHHHHH
Q 043362 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA--------FVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 203 ~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~g~~~~a~~~ 271 (516)
.+..+....- |-..=+..+..+.+.|+.++|.+++......+..|-... ......+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777665543 334445556666777777777777777665554332211 13345566777777777777
Q ss_pred HHHhHHh
Q 043362 272 FYGMKNK 278 (516)
Q Consensus 272 ~~~~~~~ 278 (516)
|..+.+.
T Consensus 328 ~~~v~k~ 334 (517)
T PF12569_consen 328 FHAVLKH 334 (517)
T ss_pred HHHHHHH
Confidence 7666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-06 Score=78.38 Aligned_cols=262 Identities=10% Similarity=-0.061 Sum_probs=178.0
Q ss_pred CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043362 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT-FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189 (516)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 189 (516)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ .-.-.-.+.+.|+++....+...+.... +.....|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 35667788888888888888888888887653 344332 1111122346677777766666655432 1122222222
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 043362 190 INMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 266 (516)
........+++.|..+-++..+. ++..+-.-...+.+.|+.++|.-.|+..+.. -+-+...|..|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHH
Confidence 33344456778888777766543 4444444456778889999999999988774 1345678999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 267 KGLEYFYGMKNKYGLQPGPEHYTCMV-DLLG-RAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 267 ~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 342 (516)
+|...-+...+. +..+..+.+.+. ..+. ....-++|.+++++.. .+|+ ....+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 988777766642 333444444432 2222 2233578888888765 6677 56667777888899999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+...|++ ..++.|+..+...+.+++|...|.....
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99888866 5888999999999999999999887754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-08 Score=84.39 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDL 294 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 294 (516)
+...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|...|..+.|.+-|++..+ +.| +..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34456677888888888888888888752 23456777888888888888888888888874 345 56677888888
Q ss_pred HHhcCCHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 295 LGRAGQLNEALELIESMLVEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
+|..|++++|...|++....|+ ..+|..+.-...+.|+.+.|...+++.++.+|+.+.+...+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8889999999999988764443 567888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 043362 371 MRVRMMMRERRL 382 (516)
Q Consensus 371 ~~~~~~m~~~~~ 382 (516)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988876544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-07 Score=89.33 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-------------CCCCCHH--HHHHHHHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY-------------GLQPGPE--HYTCMVDLLG 296 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~ 296 (516)
.+...+..+...|+++ +|+.|-..|......+-..+++....... .-.|+.. ++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3444556666677553 45555555555555555555555443221 0123332 3355577788
Q ss_pred hcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 297 RAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
..|++++|++++++.. ..|+ +..|..-...+...|++.+|....+.+.++++.|...-.-.+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888776 5575 6777777788888899999998888888888888766666777788888999888888
Q ss_pred HHHHhCCC
Q 043362 375 MMMRERRL 382 (516)
Q Consensus 375 ~~m~~~~~ 382 (516)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 87766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-06 Score=79.66 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=194.9
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH--HHHHH--HH
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC--LMTMY--VK 94 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--ll~~~--~~ 94 (516)
++-+.++|++++|+....+++..+ +-|...+..-+-++.+.+.++.|..+.+.- + -..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHH
Confidence 456777889999999999998765 555666777777788888888887543321 1 0011111 12333 25
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----------------------------CC
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV----------------------------CP 146 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------~p 146 (516)
.+..|+|.+.++.....+..+...-...+-+.|++++|+++|+.+.+.+. .|
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 56666666666644444433444445555666666666666666633321 01
Q ss_pred CHHHHHHHHH---HHHhcCChHHHHHHHHHHHHcCC-------------CCchH-HHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 147 DAVTFVGVLS---SCAHLGAHSVGLEVEQQIQANGF-------------GSNPF-LNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 147 ~~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~g~-------------~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
..||..+.+ .+...|++.+|+++++...+.+. ..... .---|.-.+-..|+.++|..+|...
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 112332222 23345666666666666522110 00000 1112333344556666666655544
Q ss_pred CCC---CH------------------------------------------------------------------------
Q 043362 210 PRK---TV------------------------------------------------------------------------ 214 (516)
Q Consensus 210 ~~~---~~------------------------------------------------------------------------ 214 (516)
... |.
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 211 00
Q ss_pred ---------hHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH--------Hh
Q 043362 215 ---------VSWTAIIGGY--GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY--------GM 275 (516)
Q Consensus 215 ---------~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~ 275 (516)
..+.+++... ++...+.+|.+++...-+....-........+......|+++.|.+++. .+
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 0111111111 1111233444444443332111112344455566677899999999988 44
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 043362 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 276 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 346 (516)
.+ +.-.+.+..+++..|.+.++-+-|..++.+.. ..+. ..+|.-+...-.++|+-++|..+++++.+.
T Consensus 411 ~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 411 LE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 32 23345566778888888888776776666553 1121 234444445556789999999999999999
Q ss_pred CCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 347 EPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 347 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
.|++..+...++.+|++. +.+.|..+-+.+
T Consensus 488 n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999876 456666554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-08 Score=93.98 Aligned_cols=216 Identities=15% Similarity=0.128 Sum_probs=172.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
+.+.|++.+|.-.|+..++.. +.+...|--|.-.....++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888888875 45678888888888888888888888877653 36677777888899999888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVL-----------SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 303 (516)
..++.-.... |.. ..+. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9998876532 110 0000 12222333455666777776665666889999999999999999999
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
|.+.|+... .+| |...||-|....+...+.++|+..|.+++++.|.-..+.+.|+-.|...|.+++|.+.|-....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999887 677 5899999999999999999999999999999999999999999999999999999998876654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-06 Score=81.81 Aligned_cols=193 Identities=8% Similarity=-0.058 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhc
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPDG--TAFVSVLSACSH 261 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~ 261 (516)
.+...+...|++++|.+.+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344455555555555555554432 2334445555555555555555555555544211 1121 123344455555
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhcCCC-C---CHHHHHHHHHHHHhcC
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPGPEHY-T--CMVDLLGRAGQLNEALEL---IESMLVE-P---DGAVWGALLGACKIHK 331 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~-p---~~~~~~~ll~~~~~~g 331 (516)
.|++++|..+++.........+..... + .++.-+...|..+.+.+. ....... | ..........++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 566666666665553211101111111 1 112222222321111111 1110000 1 1122223445566777
Q ss_pred CHHHHHHHHHHHhhcC-C--------CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 332 NVELAELAFGKVIKLE-P--------MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.+.|..+++.+.... . .........+.++...|++++|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777765422 1 12334456667778899999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-05 Score=79.79 Aligned_cols=347 Identities=12% Similarity=0.101 Sum_probs=193.9
Q ss_pred CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 043362 26 SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f 105 (516)
|+-++|.+..+.-.... .-+.+.|..+.-.+....++++|...+..+++.+ +.|..++.-|.-.-++.|+++.....-
T Consensus 55 g~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44455555544443322 2233344444444444455666666666655554 444555555555555555555444433
Q ss_pred cccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHH
Q 043362 106 DQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLS------SCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 106 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~a~~~~~~~~ 175 (516)
.+..+. .-..|..++.++.-.|++..|..+.++..+.. -.|+...+..... .....|.++.|.+.+....
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 333222 23678888888888888888888888887653 2455555543322 2345566666666554443
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHH-HHHHHHhcCCHHHHH-HHHH-------------
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTA-IIGGYGIHGHGEVAV-QLFD------------- 238 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~------------- 238 (516)
.. +......-..-.+.+.+.+++++|..++..+..+ |..-|.- +..++.+-.+.-+++ .+|.
T Consensus 213 ~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 213 KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 32 2222333455667778888888888888887654 3333332 223332222222222 3333
Q ss_pred ---------------------HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-----C------------
Q 043362 239 ---------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY-----G------------ 280 (516)
Q Consensus 239 ---------------------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~------------ 280 (516)
.+.+.|+++ +|..+.+.|-.-...+ +++++...+ |
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCccccccc
Confidence 333334332 2222222222211111 222211110 1
Q ss_pred CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 281 LQPGPEH--YTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 281 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
-+|.... +-.++..|-+.|+++.|...++... ..|+ +..|.+=.+.+...|++++|...++++.+++..|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 1344443 4456788889999999999999886 4465 4455555577888899999999999999988655433334
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
-+.-..++++.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 45556788899999998888776553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-07 Score=85.85 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=156.6
Q ss_pred cCCHHHHHHHHcccCCCC----chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKG----LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
.|++..+..-.+ ....+ .....-+.++|...|+++.++ .++.... .|.......+...+....+-+.+..-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 566666665443 11111 234555667777777766544 3333322 45555544444444333333344333
Q ss_pred HHHHHHcCCC-CchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 171 EQQIQANGFG-SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 171 ~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
+......... .+..+......+|...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD- 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED- 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-
Confidence 3333222222 23344444456677889999999988876 46667777889999999999999999999874 334
Q ss_pred HHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHH
Q 043362 250 TAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGAL 323 (516)
Q Consensus 250 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 323 (516)
.+...+..++.. ...+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++.. ..| +..+...+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 444555554433 3468999999999875 446788889999999999999999999998876 344 46677778
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhhcCCCCc
Q 043362 324 LGACKIHKNV-ELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 324 l~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 351 (516)
+......|+. +.+.+.+.++....|+.+
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8777777877 778889999998888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-06 Score=82.14 Aligned_cols=365 Identities=14% Similarity=0.068 Sum_probs=225.1
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-ChhHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-DFSVGNCLM 89 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll 89 (516)
|...|..|--+....|+++.+.+.|++....- .-....|..+-..+...|.-..|..+++........| |+.++-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 55667777777788888888888888766432 2334556666666777777777777777655433223 333333333
Q ss_pred HHHHH-cCCHHHHHHHHcccCC--------CCchHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCC-CCCCH
Q 043362 90 TMYVK-CGSVDYGRKLFDQVPE--------KGLITWNAMISGYAQN-----------GLATHVLELYREMKSLG-VCPDA 148 (516)
Q Consensus 90 ~~~~~-~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~p~~ 148 (516)
..|.+ .|.++++..+-.+... .....|-.+.-+|... ....++++.+++..+.+ -.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 33332 2444444333332221 1123444444444321 12345666677666543 23333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----------------
Q 043362 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---------------- 212 (516)
Q Consensus 149 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------- 212 (516)
..|. .--++-.++++.|.+..++..+.+-..+...|.-|.-.+.-.+++.+|+.+.+...+.
T Consensus 481 if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3332 3335556777788887777777655667777777777777777777777776543210
Q ss_pred -------CHhHHHHHHHHHH------h-----------------cCCHHHHHHHHHHHH--------HcC---------C
Q 043362 213 -------TVVSWTAIIGGYG------I-----------------HGHGEVAVQLFDEML--------KSG---------I 245 (516)
Q Consensus 213 -------~~~~~~~li~~~~------~-----------------~g~~~~A~~~~~~m~--------~~g---------~ 245 (516)
-+.+...++..+- + .++..+|.+..+++. ..| +
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0011111111111 0 011111211111110 001 1
Q ss_pred C--CCH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 043362 246 R--PDG------TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD 316 (516)
Q Consensus 246 ~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 316 (516)
. |+. ..+......+...+..++|...+.+.... ..-....|......+...|+.++|.+.|.... ..|+
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 1 121 12334455677788888888887777642 23356677777888899999999999998876 6775
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 317 -GAVWGALLGACKIHKNVELAEL--AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 317 -~~~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.+..++...+.+.|+...|.. ++..+.+++|.++.+|..++.++.+.|+.++|...|....+.
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7888899999999999888888 999999999999999999999999999999999999988754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-05 Score=73.80 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=77.9
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHH-HHHHhcCCHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-E-PDGAVWGALL-GACKIHKNVELAE 337 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~~~~~~ll-~~~~~~g~~~~A~ 337 (516)
-...+++.+.+++.+.. |=..-|...+ .+.++++..|.+.+|+++|-++.. + .|..+|.+++ ..|.+.+.++.|.
T Consensus 371 L~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 33456666666666653 2222333333 467888899999999999988761 1 3567776665 5577888888876
Q ss_pred HHHHHHhhcC-CCC-ccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 338 LAFGKVIKLE-PMN-TGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 338 ~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
.++ ++.+ |.+ .......++-|.+++.+--|.+.|+.+...+.
T Consensus 449 ~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 449 DMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 554 4444 322 22344667889999999999999998876443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-05 Score=78.24 Aligned_cols=197 Identities=13% Similarity=-0.036 Sum_probs=112.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHH-HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH--
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLC-LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC-- 87 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 87 (516)
+..|..+...+...|+.+.+...+....+.. ..++...... ....+...|+++.|...++.+++.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4566667777777788888776666655432 1122211111 1223456688888888888887764 444444442
Q ss_pred -HHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043362 88 -LMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163 (516)
Q Consensus 88 -ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 163 (516)
+.......|..+.+.+.++.....+. ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234555556665554322222 233344556677777777777777777653 3344555666666777777
Q ss_pred hHHHHHHHHHHHHcCC-CCch--HHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 164 HSVGLEVEQQIQANGF-GSNP--FLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+++|...++...+... .++. ..|..+...+...|++++|.++|++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777665421 1221 233455666666677766666666643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-06 Score=91.04 Aligned_cols=324 Identities=11% Similarity=-0.027 Sum_probs=205.4
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC----CCC------c--hHHHHHHHHHHH
Q 043362 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP----EKG------L--ITWNAMISGYAQ 125 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~------~--~~~~~li~~~~~ 125 (516)
...|++..+..++..+.......+..........+...|++++|...++... ..+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666655555443111112223333445556677899999888886542 111 1 122233455678
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHhC
Q 043362 126 NGLATHVLELYREMKSLGVCPDA----VTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GF-GSNPFLNNALINMYARC 196 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~ 196 (516)
.|++++|...+++....--..+. .+.+.+...+...|++++|...+.+.... |. .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999987763111121 23445556677899999999999888753 21 11123456677788899
Q ss_pred CCHHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhc
Q 043362 197 GNLKKARAIFDGMPR-------K----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIRPD--GTAFVSVLSACSH 261 (516)
Q Consensus 197 g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~ 261 (516)
|++++|.+.+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988776431 1 1223445556677789999999999887552 11122 2344455667788
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhcCCC--CCH----HHHHHHHHHHHhc
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPGPEHY-----TCMVDLLGRAGQLNEALELIESMLVE--PDG----AVWGALLGACKIH 330 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 330 (516)
.|+.++|...+........-......+ ...+..+...|+.+.|...+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224455689999999998776411 111 1134566778889
Q ss_pred CCHHHHHHHHHHHhhcC------CCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 331 KNVELAELAFGKVIKLE------PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
|+.++|...++++.+.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987642 1223456778889999999999999999887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-05 Score=74.60 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC---------CC
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD---GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL---------QP 283 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---------~p 283 (516)
.|-.+...|-.+|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|.++.+........ .|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 466666666666777777777766655321110 122333333333455566666665555421000 00
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CC
Q 043362 284 -------GPEHYTCMVDLLGRAGQLNEALELIESML----VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLE--PM 349 (516)
Q Consensus 284 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~ 349 (516)
+...|..+++.....|-++....+++++. ..|. +..|.. .+-.|.-++++.+++++-+.+. |.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm---fLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM---FLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 12345555555556666666666666664 2232 112222 2234455677777777766655 22
Q ss_pred CccchHHHhhHHHH---cCChhHHHHHHHHHHh
Q 043362 350 NTGYYVLLSNIYSE---ARNLDGIMRVRMMMRE 379 (516)
Q Consensus 350 ~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 379 (516)
-...|+..+.-+.+ ....+.|..+|+...+
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 22333333332222 2356777777777766
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-06 Score=82.09 Aligned_cols=216 Identities=12% Similarity=0.070 Sum_probs=145.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh----------HHHHHH
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV----------SWTAII 221 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~----------~~~~li 221 (516)
..+.++..+..+++.+.+-+...+... .++.-++....+|...|.+.++...-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345566666667777777777777754 46666677777788777777766655543322111 122234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHhcCC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE-HYTCMVDLLGRAGQ 300 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 300 (516)
.+|.+.++++.|+..|.+.......||.. .+....+++........ -+.|... --..=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 45666677778888887766544444322 12223344443333332 2233321 11122556778899
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 301 LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
+..|...+.++. ..| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 456 588899999999999999999999999999999999899988889999999999999998876
Q ss_pred hCC
Q 043362 379 ERR 381 (516)
Q Consensus 379 ~~~ 381 (516)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-07 Score=87.35 Aligned_cols=244 Identities=11% Similarity=0.014 Sum_probs=163.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 200 (516)
+-+.-.|++..++.-.+ .....-..+..+...+.+++...|..+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34555788888886555 222211223345566778888888876543 3443433 566666665555444445666
Q ss_pred HHHHHHhcCC-CC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 043362 201 KARAIFDGMP-RK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275 (516)
Q Consensus 201 ~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 275 (516)
.+..-++... ++ +....-.....+...|++++|++++.+- .+.......+..+...++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665433 22 2222222234566789999999988652 35667777889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 276 KNKYGLQPGPEHYTCMVDL----LGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 276 ~~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+ +..|. +...|..+ +.-.+.+.+|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 73 44443 33334433 333447999999999987 3467888999999999999999999999999999999
Q ss_pred CccchHHHhhHHHHcCCh-hHHHHHHHHHHh
Q 043362 350 NTGYYVLLSNIYSEARNL-DGIMRVRMMMRE 379 (516)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 379 (516)
++.+...++.+....|+. +.+.+++..+++
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999998 667788888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-06 Score=73.25 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 194 (516)
+...|.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|++.++.. +.+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566777888888888888888877752 2234577777777778888888888888877764 345667777777777
Q ss_pred hCCCHHHHHHHHhcCC-CC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 195 RCGNLKKARAIFDGMP-RK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
..|.+++|...|++.. .| -..+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777654 23 23466666666667777777777777766642 222345555666666666666666
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 307 (516)
.+++..... ..++..+.-..|..-.+.|+-+.|.+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 666666543 225555555555555555555554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00011 Score=72.53 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=138.7
Q ss_pred CChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-------hHHHHHHHHHHhcCC
Q 043362 162 GAHSVGLEVEQQIQANG-----FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-------VSWTAIIGGYGIHGH 229 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~ 229 (516)
|+..+-...+.++++.= ...-...|..+.+.|-..|+++.|+.+|++..+-+- ..|-.-...=.++.+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 34455555566655521 111234678899999999999999999999875432 345555555567888
Q ss_pred HHHHHHHHHHHHHcCCC-----------CC------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 043362 230 GEVAVQLFDEMLKSGIR-----------PD------GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~-----------p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 292 (516)
++.|+++.++.....-. +. ...|...+..--..|-++....+++++.+-.-..| ...-...
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyA 518 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYA 518 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 99999988876542111 11 12233344444556788888889998886522233 3323333
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CC-CC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCc-c-chHHHhhHHHH
Q 043362 293 DLLGRAGQLNEALELIESML--VE-PD-GAVWGALLGACKI---HKNVELAELAFGKVIKLEPMNT-G-YYVLLSNIYSE 363 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~--~~-p~-~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~-~-~~~~l~~~~~~ 363 (516)
..+....-++++.+++++-. ++ |+ -..|++.+.-+.+ ...++.|..+|+++++.-|+.. . .|...+..-.+
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34556677999999999876 33 55 5678887766543 2478999999999999766432 2 23333333445
Q ss_pred cCChhHHHHHHHHHH
Q 043362 364 ARNLDGIMRVRMMMR 378 (516)
Q Consensus 364 ~g~~~~a~~~~~~m~ 378 (516)
-|....|..++++..
T Consensus 599 ~GLar~amsiyerat 613 (835)
T KOG2047|consen 599 HGLARHAMSIYERAT 613 (835)
T ss_pred hhHHHHHHHHHHHHH
Confidence 678888888888754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00021 Score=72.16 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=110.4
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHH
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV-TFV 152 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 152 (516)
.+.-|..+|..|.-+..++|+++.+.+.|++...-. ...|+.+...|...|.-..|+.+.+.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 355678888888888888999999888888765432 3678888888888888888888887765432224333 333
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhC----C-------CHHHHHHHHhcCC-----C
Q 043362 153 GVLSSCA-HLGAHSVGLEVEQQIQAN--GF--GSNPFLNNALINMYARC----G-------NLKKARAIFDGMP-----R 211 (516)
Q Consensus 153 ~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~----g-------~~~~A~~~~~~m~-----~ 211 (516)
..-..|. +.+..+++..+-.+++.. +. ......|-.+.-+|... . ...++.+.+++.. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2333333 455666666665555541 10 11123333333333321 1 1223344444332 1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|++.-|- .--|+..++.+.|++..++..+.+-.-+...|..|.-.++..+++.+|+.+.+.....
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 2222222 2234455566666666666666544445555555555555555666665555555444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-05 Score=71.59 Aligned_cols=304 Identities=17% Similarity=0.143 Sum_probs=148.0
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHH---HHHhhcCCCchHHHHHHHHHHHhCCCCChhH-HHHHHHHHHH
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCL---LPICVDPGYLWLGMCCHCICVKFGLDLDFSV-GNCLMTMYVK 94 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~~~~~ 94 (516)
-..+..+|++..|+.-|....+- |+..|.++ ...|...|+-..|..=+..+++. +||-.. .-.-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34444555556666665555432 22222222 23445555555555555555544 344321 1112234455
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
.|.+++|..=|+.+.+.+.. +|...+|.+-+.... ........+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 66666666666555433220 000011100000000 0011222334445566777777777777
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDG---MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
++.. +.|...+..-..+|...|++..|+.=++. +...+....--+-..+-..|+.+.++...++-.+ +.||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 6653 45666666777777777777777554433 3344555555555666677777777777776665 4555432
Q ss_pred HHH----H---------HHHHhccCChHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 043362 252 FVS----V---------LSACSHAGLTDKGLEYFYGMKNKYGLQPG-----PEHYTCMVDLLGRAGQLNEALELIESML- 312 (516)
Q Consensus 252 ~~~----l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~- 312 (516)
... | +......+.+.++.+-.+...+. .|. ...+..+-..|...|++-+|++.-.+..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 111 0 01122334444444444444432 222 1122333344445566666665555443
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 313 VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 313 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
..|| +.++---..+|.....++.|+.-|+++.+.+|++.
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 3343 45555555556656666666666666666666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00012 Score=72.48 Aligned_cols=362 Identities=13% Similarity=0.085 Sum_probs=242.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
-..-|-.++..|- .+++...+.+.+..+.. .+-...|.....-.+...|+.++|....+..++.. ..+.+.|..+.-
T Consensus 7 E~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl 83 (700)
T KOG1156|consen 7 ENALFRRALKCYE-TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHH
Confidence 3344555666553 56788888888887763 23334455444444566789999988877776654 445567887777
Q ss_pred HHHHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 166 (516)
.+-...++++|.+.|..... .|...|-.+.-.-++.|+++.....-.+..+. .| ....|.....+..-.|+...
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999987643 34677877777778889999998888888774 34 44577888888888999999
Q ss_pred HHHHHHHHHHcC-CCCchHHHHHHH------HHHHhCCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHhcCCHHHHHHH
Q 043362 167 GLEVEQQIQANG-FGSNPFLNNALI------NMYARCGNLKKARAIFDGMPRK--T-VVSWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 167 a~~~~~~~~~~g-~~~~~~~~~~li------~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~ 236 (516)
|..+.+...+.. -.|+...+.-.. ....+.|..++|.+.+...... | ...-.+....+.+.++.++|..+
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 999999988864 345555553322 2346778899998888776543 2 22334456678899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHh-c-cCChHHHHHHHHHhHHhc---------------------------------CC
Q 043362 237 FDEMLKSGIRPDGTAFVSVLSACS-H-AGLTDKGLEYFYGMKNKY---------------------------------GL 281 (516)
Q Consensus 237 ~~~m~~~g~~p~~~t~~~ll~a~~-~-~g~~~~a~~~~~~~~~~~---------------------------------~~ 281 (516)
+..+... .||..-|...+..+. + .+..+....+|....+.+ |+
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9999985 577776665554443 2 222222224444443321 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHhcC-------------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHH
Q 043362 282 QPGPEHYTCMVDLLGRAGQLNE----ALELIESML-------------VEPDGAVWGA--LLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~-------------~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~ 342 (516)
++ ++..+...|-.-...+- +..+...+. ..|....|.. +...+-..|+++.|+...+.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 21 22222222221111111 111111111 1467666655 55668899999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+++.-|.-+..|..-+.++.++|..++|..++++..+.+.
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9998887777888888999999999999999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-06 Score=76.82 Aligned_cols=303 Identities=11% Similarity=0.047 Sum_probs=170.9
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc--hHHH-HHHHHHHHc
Q 043362 50 MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL--ITWN-AMISGYAQN 126 (516)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~--~~~~-~li~~~~~~ 126 (516)
+.+++.-+.+..++..+.+++..-.+.. +.+....+.|...|....++..|...++++...-+ .-|. --....-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444455556666666665555443 33444555666666666667777766666643221 1111 012344556
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSS--CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 204 (516)
+.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6777777777766542 222221111222 234556666666666554322 34444445555667777887777
Q ss_pred HHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 043362 205 IFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280 (516)
Q Consensus 205 ~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 280 (516)
-|+...+- ....||..+.. .+.|+++.|+++..++.+.|++..+.. + .|..-++..+ +.+ |
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv-rsv----g 230 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV-RSV----G 230 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-hcc----c
Confidence 77766532 34566654444 356778888888888887776532210 0 0111111000 000 0
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 281 LQPG-------PEHYTCMVDLLGRAGQLNEALELIESML----VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 281 ~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.|- ...+|.-...+.+.|+++.|.+.+..|| .+.|++|...+.-. -..+++.++.+-+.-++++.|-
T Consensus 231 -Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 231 -NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred -chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 011 1122333344567899999999999998 23466666554322 2345566666777777888887
Q ss_pred CccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 350 NTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.+.++..++-.|++..-++-|..++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 778999999999999988888887754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-06 Score=90.05 Aligned_cols=200 Identities=16% Similarity=0.166 Sum_probs=166.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRK--------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
|.....|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|+++.+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 445678888899999999999999999887532 23578888888888888888999999988742 22356
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD---GAVWGALLGAC 327 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~ 327 (516)
|..|+..|.+.+.+++|.++++.|.++++ ....+|..+++.+.+..+-+.|..++++.. .-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998766 577899999999999999999999998875 2232 44445555666
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
.++||.+.+..+|+..+.-.|.....|..++.+-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999887764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-05 Score=67.94 Aligned_cols=254 Identities=11% Similarity=0.061 Sum_probs=147.7
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHH-HHHHHH
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGN-CLMTMY 92 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~ll~~~ 92 (516)
-+++.+.-+.+..+++.|++++..-.+.. +.+...++.+...|-...++..|-..++++-.. .|...-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 35666667778888899999888877763 336666777777777777888888777776554 23222211 111223
Q ss_pred HHcCCHHHHHHHHcccCC-----------------------------------CCchHHHHHHHHHHHcCChhHHHHHHH
Q 043362 93 VKCGSVDYGRKLFDQVPE-----------------------------------KGLITWNAMISGYAQNGLATHVLELYR 137 (516)
Q Consensus 93 ~~~g~~~~A~~~f~~~~~-----------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 137 (516)
.+.+.+.+|+++...|.. .+..+.+.......+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 344455555555444432 222333333334456778888888887
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------Cch--------HHHHHHHH----
Q 043362 138 EMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-------------SNP--------FLNNALIN---- 191 (516)
Q Consensus 138 ~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-------------~~~--------~~~~~li~---- 191 (516)
...+- |..| ...|+..+. ..+.++.+.|.+...+++++|+. +|+ -.-++++.
T Consensus 169 aAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 77664 4433 455655543 34567778888887777776542 111 11123333
Q ss_pred ---HHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 043362 192 ---MYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263 (516)
Q Consensus 192 ---~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 263 (516)
.+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+.+ +....||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 345667777787777777744 555544432211 2344555555555555543 234567777777777777
Q ss_pred ChHHHHHHHHH
Q 043362 264 LTDKGLEYFYG 274 (516)
Q Consensus 264 ~~~~a~~~~~~ 274 (516)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 77777766643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-06 Score=76.52 Aligned_cols=181 Identities=11% Similarity=-0.010 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMPR--K-TV---VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG--TAFV 253 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 253 (516)
....+-.+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344555666666777777777777765542 1 11 34555666677777777777777776653211111 1333
Q ss_pred HHHHHHhcc--------CChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 043362 254 SVLSACSHA--------GLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324 (516)
Q Consensus 254 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 324 (516)
.+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 334444433 5566666666666643 2322 1221111110 000000 00112445
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMN---TGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..+...|++++|...++++++..|++ +..+..++.+|.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66888999999999999999987654 467889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-08 Score=58.09 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.7e-05 Score=82.80 Aligned_cols=326 Identities=9% Similarity=-0.041 Sum_probs=205.0
Q ss_pred HhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCC------CCC--hhHHHHHHHHHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL------DLD--FSVGNCLMTMYVK 94 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~ll~~~~~ 94 (516)
...|++..+..++..+.......+..........+...++++++...+......-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666655553211111222223333445567899999988887755311 111 1222334455678
Q ss_pred cCCHHHHHHHHcccCC----CCc----hHHHHHHHHHHHcCChhHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhc
Q 043362 95 CGSVDYGRKLFDQVPE----KGL----ITWNAMISGYAQNGLATHVLELYREMKSLG--V-CPD--AVTFVGVLSSCAHL 161 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~t~~~ll~~~~~~ 161 (516)
.|++++|...+++..+ .+. .+++.+...+...|++++|...+.+..... . .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 9999999998877532 221 345667777888999999999998876421 1 111 23445566678889
Q ss_pred CChHHHHHHHHHHHHc----CCCC---chHHHHHHHHHHHhCCCHHHHHHHHhcCCC------C--CHhHHHHHHHHHHh
Q 043362 162 GAHSVGLEVEQQIQAN----GFGS---NPFLNNALINMYARCGNLKKARAIFDGMPR------K--TVVSWTAIIGGYGI 226 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~~~~ 226 (516)
|+++.|...+++.... +... ....+..+...+...|++++|...+++... + ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998887652 2211 233455666777888999999988876532 1 12344456667888
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh
Q 043362 227 HGHGEVAVQLFDEMLKSGIR-PDGTAF-----VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGR 297 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~ 297 (516)
.|++++|.+.+.+....... .....+ ...+..+...|+.+.|..++...... ..... ...+..+..++..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHH
Confidence 99999999999887542111 111111 11223445588999999988765531 11111 1113456778889
Q ss_pred cCCHHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 298 AGQLNEALELIESML-------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.|+.++|...+++.. ..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999999888764 1111 345556667789999999999999999987643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-05 Score=78.45 Aligned_cols=189 Identities=15% Similarity=0.211 Sum_probs=95.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 236 (516)
+......+..|..+++.+..... -...|.-+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|+++.|.++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 33444555566666655554431 12234455566666666666666665432 234445556666666666655
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 043362 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316 (516)
Q Consensus 237 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 316 (516)
-.+.. |.......|.+-..-.-..|++.+|.+++-.+. .|+ .-|.+|-+.|..++..++.++-. |+
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h--~d 879 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH--GD 879 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC--hh
Confidence 54432 223333444444444555566666665554332 233 23555666666666666665532 33
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 317 --GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 317 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
..|...+..-+-..|++..|+.-|-++- -|..-.++|...+.|++|.++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2333444445555566666655544432 2334445555555555555543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.3e-05 Score=76.91 Aligned_cols=336 Identities=14% Similarity=0.121 Sum_probs=196.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-----------
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCICVKFG----------- 77 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----------- 77 (516)
.|...-+.-+.++...+-+.+-++++++..-.+-.. ....+..++-.-+-.-+.....+..+++-..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 344444556788889999999999999887543111 11112122111111112222222222211111
Q ss_pred ------------CCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 043362 78 ------------LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145 (516)
Q Consensus 78 ------------~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 145 (516)
+..+....+.|+. .-+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 1122222222222 12344444444444333 357999999999999999999877543
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------------
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-------------- 211 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------------- 211 (516)
-|+..|..++..+.+.|.+++-...+....+..-+|.+ -+.|+-+|++.+++.+-+++...-..
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 36678999999999999999999999888877655544 46789999999999887776543211
Q ss_pred ---------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-
Q 043362 212 ---------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL- 281 (516)
Q Consensus 212 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~- 281 (516)
.++.-|..+...+...|++..|.+.-++. .+..||-.+-.+|...+.+..|. |. |+
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iC---GL~ 1274 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----IC---GLN 1274 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hc---Cce
Confidence 03344556666666666666666655542 24567777777777766655442 21 32
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 282 -QPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 282 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
.....-..-|+..|...|.+++-..+++... .+.....|+-|.-.|.+.+ +++..+.++-.-.. ...--++
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKvi 1348 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVI 1348 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHH
Confidence 2244556677888888888888888887665 2234455666665565543 34333333322211 1112456
Q ss_pred hHHHHcCChhHHHHHHHHHH
Q 043362 359 NIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~ 378 (516)
.++..+.-|.+..=++..-.
T Consensus 1349 RA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 77777777777766655443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=8e-08 Score=57.53 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-05 Score=83.79 Aligned_cols=227 Identities=11% Similarity=0.085 Sum_probs=175.1
Q ss_pred CCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh-CC---CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC--chHHH
Q 043362 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKF-GL---DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWN 117 (516)
Q Consensus 44 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~---~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~--~~~~~ 117 (516)
+-....|..-+.-....+++++|+++.+++++. ++ ..-..+|.+++++-..-|.-+...++|++..+-. ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334556777788888999999999999988765 22 1234578899998888898899999999987653 36788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhC
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALINMYARC 196 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~ 196 (516)
.|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+...-+.|+.++.++++.=.. ..+....-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 3445667888888888888889999999998885211 2355666777888899
Q ss_pred CCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChHHHHHH
Q 043362 197 GNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG--TAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 197 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.|..-...|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999998763 35678999999999999999999999999998887753 3444555544445554443333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00031 Score=68.94 Aligned_cols=311 Identities=13% Similarity=0.086 Sum_probs=172.9
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHH--HHHHH--HHcC
Q 043362 52 CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA--MISGY--AQNG 127 (516)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g 127 (516)
+=++-+...+++++|.+.-..++..+ +.|...+..=+-+..+.+++++|+++.+.-.... +++. +=.+| .+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 33455677899999999999999887 6667777777778899999999997766544222 2222 23444 5789
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hH---------------------
Q 043362 128 LATHVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-PF--------------------- 184 (516)
Q Consensus 128 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~--------------------- 184 (516)
..++|+..++ |..++. .+...-...|.+.+++++|..+|+.+.+.+.+.- ..
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 9999999887 334433 3666667789999999999999999977653211 11
Q ss_pred -----HHHH---HHHHHHhCCCHHHHHHHHhcC--------CCCC-----H-----hHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 185 -----LNNA---LINMYARCGNLKKARAIFDGM--------PRKT-----V-----VSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 185 -----~~~~---li~~y~~~g~~~~A~~~~~~m--------~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
+|.. ....+...|++.+|+++++.. .+.| . ..---|.-.+...|+-++|..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 1111 122234455555555555544 1100 0 011122333445555556666555
Q ss_pred HHHHcCCCCCHHHH----HHHHHHHhccCChHH--HHHHHHHhHHhc------CC--CCCHHHH--HHHHHHHHhcCCHH
Q 043362 239 EMLKSGIRPDGTAF----VSVLSACSHAGLTDK--GLEYFYGMKNKY------GL--QPGPEHY--TCMVDLLGRAGQLN 302 (516)
Q Consensus 239 ~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~--a~~~~~~~~~~~------~~--~p~~~~~--~~li~~~~~~g~~~ 302 (516)
...... ++|.... |.|+ +...-.++-. ++..++...... .+ .--...+ ++++.+| .+..+
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 555542 2332111 1111 1111111111 111111110000 00 0000011 1222222 34556
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHhhcCCCC-ccchHHHhhHHHHcCChhHHHHHHH
Q 043362 303 EALELIESML-VEPDGAVWGALL-GACKIH-KNVELAELAFGKVIKLEPMN-TGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 303 ~A~~~~~~m~-~~p~~~~~~~ll-~~~~~~-g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
.+.++-...+ ..|.. .+.+++ .+.... .....+..++....+..|.+ ......++......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 325 QVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666666665 22443 334444 333222 24777888888888888876 3455567778899999999999998
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-06 Score=81.76 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=121.7
Q ss_pred CcccHHHHH--HHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh--------C-CC
Q 043362 11 LTVCYNALI--SGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF--------G-LD 79 (516)
Q Consensus 11 ~~~~~n~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g-~~ 79 (516)
|.+|--+|+ +.|+.-|+.+.|.+-.+..+.. ..|..+.+.|.+..+++-|+-.+..|... . -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 344444444 2455567777776666555432 45777777777777776666655544221 1 11
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043362 80 LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 80 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
++ ..-....-.-...|.+++|+.+|.+-+. |..|-..|...|.+++|+++-+.=-...+ ..||..-..-+.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLE 869 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHH
Confidence 21 2222233334456777777777776544 33444556667777777766543221111 234444444444
Q ss_pred hcCChHHHHHHHHHHHHcC-------------------CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQANG-------------------FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g-------------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 220 (516)
..++.+.|.+.|++..... -..|...|.--....-..|+++.|+.+|.... -|-++
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~ 944 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSM 944 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhh
Confidence 5556666666554321110 01222333333333444566666666665433 24444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+...|-.|+.++|-.+-++ .-|......|..-|...|++.+|..+|-+..
T Consensus 945 VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5555555555555554443 1233444445555666666666665555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=71.33 Aligned_cols=118 Identities=9% Similarity=0.070 Sum_probs=89.6
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 043362 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA-CKIHKN--VELA 336 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~g~--~~~A 336 (516)
.++.+++...+....+. -+.+...|..|...|...|++++|...+++.. ..| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55666666666666643 24467788888888888888888888888775 445 46777777765 356666 5888
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-06 Score=80.50 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=140.3
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHH
Q 043362 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLE 134 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 134 (516)
.+.|++.+|.-.|+..++.. +.+...|--|....+..++-..|...+.+..+.| ..+.-+|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777765 5566777777777777777777777777665543 3566666677777777777877
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 135 LYREMKSLGVC--------PDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 135 ~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.+...+....+ ++..+-.. ........+....++|-.+ ...+..+|+.++..|.-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776543210 00000000 0111111233333444443 3345456777788888888888888888888
Q ss_pred HhcCC--C-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 206 FDGMP--R-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 206 ~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
|+... + .|...||.|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88765 2 3677888888888888888888888888887 56663 2344566678888888888887766553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=70.40 Aligned_cols=92 Identities=11% Similarity=-0.032 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
+..+...+...|++++|...|+... ..| +...|..+..++...|++++|...|+++.+++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344455555556666555555544 233 35555555555556666666666666666666666556666666666666
Q ss_pred ChhHHHHHHHHHHh
Q 043362 366 NLDGIMRVRMMMRE 379 (516)
Q Consensus 366 ~~~~a~~~~~~m~~ 379 (516)
++++|...++...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.2e-06 Score=69.86 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 313 (516)
.+|++..+ +.|+. +..+..++...|++++|...|...... -+.+...|..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 34553 445677788899999999999988742 23367788889999999999999999999876 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 314 EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 314 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
.| +...|..+..++...|+.++|+..++++++..|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45 68888889999999999999999999999999999888776666544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.5e-06 Score=82.23 Aligned_cols=190 Identities=20% Similarity=0.206 Sum_probs=155.5
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
+++|-...-..+...+.+.|-...|..+|++. ..|.-.|-+|...|+..+|..+..+..+ -+||+..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566667778999999999999999999975 5788899999999999999999998877 4889999999999
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~ 335 (516)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-. ..| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999998876543 11122222334688888888887654 445 57888888888888999999
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
|.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999988877653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-05 Score=71.08 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV-TFVGVLSSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
++..+-..+...+..++|+.+..++++. .|+.. +|...-.++...| .++++...++.+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4555555566666777777777776653 34333 3444434444444 3556666666665543 2233444433333
Q ss_pred HHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
+.+.|.. ..++++.+++++.+.. +-|..+|.....++.+.|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 0133444444444322 123334444444444444455555555
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc----CCHHHHHHH
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRA---GQ----LNEALELIESML-VEP-DGAVWGALLGACKIH----KNVELAELA 339 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~----g~~~~A~~~ 339 (516)
.++++. . ..+...|+.....+.+. |. .+++.++..++. ..| |...|+.+...+... ++..+|...
T Consensus 166 ~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 444432 1 11233333332222222 11 234555554433 445 577788777777663 344668888
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHc
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
+.++.+.+|+++.+...|+..|...
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888888888888888888763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00051 Score=71.39 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=161.4
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 043362 21 GYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100 (516)
Q Consensus 21 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 100 (516)
....++-+++|..+|+..- .+......++.- -+.++.|.+.-+.. ..+.+|+.|..+-.+.|.+.+
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHH
Confidence 3444556667777766542 223333333332 23344443332221 234567777777777777777
Q ss_pred HHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043362 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180 (516)
Q Consensus 101 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 180 (516)
|.+-|-+. .|+..|.-.+....+.|.+++-.+.+.-.++..-.|... +.++-+|++.+++.+.+++. ..
T Consensus 1123 AieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cC
Confidence 77766443 345567777777777777777777666555554444433 34566666666665554433 11
Q ss_pred Cch--------------------------HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043362 181 SNP--------------------------FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 181 ~~~--------------------------~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
||. .-|..|...+...|+++.|...-++. .+..+|...-.+|...+.+.-|
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA- 1268 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA- 1268 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-
Confidence 222 23444555555555555555444333 2567888888888776655433
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH---HHHh
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALE---LIES 310 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~---~~~~ 310 (516)
+|-..++.....-+-.++..|...|-+++-+.+++... |++. ....|+-|.-.|++- +.++.++ +|-.
T Consensus 1269 ----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1269 ----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred ----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 33333344455567789999999999999999988765 5543 345677777777764 3333333 3321
Q ss_pred -cCC----C--CCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 311 -MLV----E--PDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 311 -m~~----~--p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
.-+ + -....|+-|.-.|.+...++.|..
T Consensus 1341 RvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1341 RVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 110 0 134567777777766666665543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-07 Score=55.82 Aligned_cols=35 Identities=43% Similarity=0.646 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCh
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINS 47 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 47 (516)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00028 Score=64.91 Aligned_cols=344 Identities=8% Similarity=0.019 Sum_probs=186.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHH-HHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
+.-+..+.++..|+.+++--...+-+ .......-+ ..+...|++++|...+..+.... .++..++-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 66777888999999998876644322 222333333 34567899999999999887754 6777777778877778899
Q ss_pred HHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 98 VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
+.+|..+-...++. ...--.|.....+.|+-++-+.+-..+... ..--.++.+.......+++|++++..++..
T Consensus 107 Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987776543 222334445556677777766665555432 122334455555566789999999999875
Q ss_pred CCCCchHHHHH-HHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcC-------
Q 043362 178 GFGSNPFLNNA-LINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGI--HGHGEVAVQLFDEMLKSG------- 244 (516)
Q Consensus 178 g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g------- 244 (516)
+ |+....|. +.-+|.|..-++-+.++++--. .....+-|.......+ +|+. |..-.+++...+
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQEYPFI 256 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhcccccchhH
Confidence 4 33333332 3445788888887777765432 2234555555544433 2322 221112211110
Q ss_pred -------------------CCCC-----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHH-----HHH
Q 043362 245 -------------------IRPD-----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV-----DLL 295 (516)
Q Consensus 245 -------------------~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~ 295 (516)
+-|. +..-..|+-.|.+.+++.+|..+.+.+. ...|-......++ +-.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhc
Confidence 1111 1122344556778889999888876654 2333332222222 222
Q ss_pred HhcCCHHHHHHHHHhcC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 296 GRAGQLNEALELIESML---VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~---~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
+....+.-|.++|+-.. ..- +..--.++.+.+.-..++++.+..+..+.....+|......++.++...|++.+|.
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 22223455555555432 010 11112223333333334444444444444443333344444555555555555555
Q ss_pred HHHHHH
Q 043362 372 RVRMMM 377 (516)
Q Consensus 372 ~~~~~m 377 (516)
++|-.+
T Consensus 414 elf~~i 419 (557)
T KOG3785|consen 414 ELFIRI 419 (557)
T ss_pred HHHhhh
Confidence 554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-05 Score=68.54 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=112.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
+-.|.+.|+++......+.+..+. ..|...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777776654443322211 01223566677887787777653 556778888888999999999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 270 EYFYGMKNKYGLQP-GPEHYTCMVDLL-GRAGQ--LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 270 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
..|++..+. .| +...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988853 44 677788888764 67777 589999999887 456 5788888888899999999999999999
Q ss_pred hhcCCCCccch
Q 043362 344 IKLEPMNTGYY 354 (516)
Q Consensus 344 ~~~~p~~~~~~ 354 (516)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-05 Score=71.69 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-chHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHh---HH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-S-NPFLNNALINMYARCGNLKKARAIFDGMPRK---TVV---SW 217 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~---~~ 217 (516)
.....+......+...|+++.|...++.+.+.... + ....+..+..+|.+.|++++|...|+++.+. +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567777888899999999999999999885421 1 1246678899999999999999999988532 222 45
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 218 TAIIGGYGIH--------GHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 218 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
..+..++.+. |+.++|.+.|+++... .|+.. ....+... ..+... -....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~-----~~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR-----LAGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH-----HHHHH
Confidence 5556666654 7789999999999875 44432 22111111 001000 00112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-V---EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~---~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
..+...|.+.|++++|...+++.. . .| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356677889999999999888875 2 23 257888899999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00016 Score=73.35 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=204.7
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHC-C--------CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-G--------VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
++-+.|..|.+.+++..+.+-|.-.+-.|... | -.|+ .+=.-+.-.....|.+++|+.++.+..+.+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D--- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD--- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 45678999999999999998888777766432 1 1232 221122222346799999999999887653
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHHHHcCChhHHHHHHHHH----------HHCCC-----
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNGLATHVLELYREM----------KSLGV----- 144 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g~----- 144 (516)
.|=..|-..|.+++|.++-+.=..-.. .||..-..-+-..++.+.|++.|++- .....
T Consensus 831 ------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 ------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 344567778999999988654222111 46666666666678888888887753 22110
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH
Q 043362 145 ----CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220 (516)
Q Consensus 145 ----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 220 (516)
..|...|.--..-....|.++.|..+|..... |-+++...+-.|+.++|-++-++- .|..+.-.+
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhl 973 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHL 973 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHH
Confidence 12333344444445566777777777766654 345666667789999998887754 366677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---------------ChHHHHHHHHHhHHhcCCCCCH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG---------------LTDKGLEYFYGMKNKYGLQPGP 285 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------------~~~~a~~~~~~~~~~~~~~p~~ 285 (516)
..-|-..|++.+|...|.+.+ +|...|..|-..+ +.-.|-.+|++.- .
T Consensus 974 aR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~---- 1036 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----G---- 1036 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----h----
Confidence 899999999999999998765 3444444443332 2223333443321 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-----------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-----------VE--PDGAVWGALLGACKIHKNVELAELAFGKVIK------- 345 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------- 345 (516)
-...-+..|-++|.+.+|+++--+-. .. .|+...+--..-+..+.++++|..++-...+
T Consensus 1037 -~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1037 -YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred -hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234566888888888887632211 12 3566666666667777888888766554433
Q ss_pred ---------------cCC------CC---ccchHHHhhHHHHcCChhHHHHHH
Q 043362 346 ---------------LEP------MN---TGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 346 ---------------~~p------~~---~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
+-| +. ......++..|.++|.+..|-+-|
T Consensus 1116 C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1116 CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 112 11 124567888899999887766544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.5e-05 Score=76.53 Aligned_cols=81 Identities=20% Similarity=0.125 Sum_probs=45.7
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
...|.+.-|...|-+.. ..| ...+|..+...+....|++-|...|.+...++|.+...|...+.+-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444443322 222 3555555555556666666666666666666666666666666666666666666666
Q ss_pred HHH
Q 043362 374 RMM 376 (516)
Q Consensus 374 ~~~ 376 (516)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-05 Score=80.68 Aligned_cols=182 Identities=12% Similarity=0.054 Sum_probs=132.9
Q ss_pred HHHHhcCChHHH-HHHHHHHHHcCCCCchHHHHHHHHHHHhC----CCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCH
Q 043362 156 SSCAHLGAHSVG-LEVEQQIQANGFGSNPFLNNALINMYARC----GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 156 ~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 230 (516)
.+.+..|..+++ .+++.++.+ ++...+.. ..+.++..+.+.-+ .++..+-.|.....+.|.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALEAAHRS 102 (694)
T ss_pred HHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCc
Confidence 445566665554 566665543 22222222 22333444444333 2577788888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
++|+.+++...+ ..||. .....+...+.+.+.+++|....++.... .| +......+..++.+.|++++|..+|
T Consensus 103 ~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 103 DEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred HHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999988 46664 56677888999999999999999999853 45 5667778888899999999999999
Q ss_pred HhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 309 ESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 309 ~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
++.. ..|+ ..+|..+..++...|+.++|...|+++.+...+....|.
T Consensus 178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9987 4454 788888999999999999999999999887654444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-05 Score=76.14 Aligned_cols=218 Identities=13% Similarity=0.151 Sum_probs=170.7
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 156 (516)
+++|--..-..+...+.+.|-...|..+|+++ ..|.-.|-.|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566778888999999999999999986 5688889999999999999998888777 3789999998888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVA 233 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 233 (516)
...+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 887777788888877765442 1122222233468899999999865433 456888888888899999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 234 VQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
.+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+- . .-+...|...+....+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999988776 4555 567999999999999999999999988864 4 4455667777777888999999999988775
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.7e-05 Score=77.59 Aligned_cols=362 Identities=11% Similarity=0.032 Sum_probs=162.5
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
|+.+|......|++...++.|..+.-..-+.. ...-...|....-.+...++...+..-|+..++.. +.|...|..|.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHH
Confidence 55556666666666666666665522111110 00111122223334445566666666666666554 55666777777
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCchHHHH---HHHHHHHcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEKGLITWNA---MISGYAQNGLATHVLELYREMKSL------GVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~ 160 (516)
.+|.++|.+..|.++|++...-++.+|.. ....-+..|.+.+|+..+...... +..--..++.-+...+.-
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777777777777776665544432221 122234456666666666555331 000011122222222222
Q ss_pred cCChHH-------HHHHHHHHHHcCCCCchHHHHHHHHHH-------------------Hh----CCCH---H---HHHH
Q 043362 161 LGAHSV-------GLEVEQQIQANGFGSNPFLNNALINMY-------------------AR----CGNL---K---KARA 204 (516)
Q Consensus 161 ~g~~~~-------a~~~~~~~~~~g~~~~~~~~~~li~~y-------------------~~----~g~~---~---~A~~ 204 (516)
.|-... +.+.+.-........+...|-.+.+++ .+ .+.. + -+.+
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~ 763 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE 763 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH
Confidence 222222 222222222211111222222111111 11 0100 0 0000
Q ss_pred HHhcCC--CCCHhHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 205 IFDGMP--RKTVVSWTAIIGGYGI----H----GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 205 ~~~~m~--~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
.+-.-. -.+..+|..++..|.+ . .+...|+..+++..+. ...+..+|+.|.-. +..|++.-+...|-+
T Consensus 764 c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIk 841 (1238)
T KOG1127|consen 764 CGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIK 841 (1238)
T ss_pred HhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhh
Confidence 000000 0123455555554433 1 1223556666665553 12344455544433 555566555555443
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE----- 347 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 347 (516)
-.. ..+....+|..+.-.+....+++-|...|.... ..| +...|--....-...|+.-++..+|..--++.
T Consensus 842 s~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 842 SRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK 919 (1238)
T ss_pred hhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc
Confidence 331 233355566666666667777777777777665 444 45566444444455666666666666533221
Q ss_pred CCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
-.....+..........|+.++-....+++
T Consensus 920 a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 920 AKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred cchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 112233444445555566655555444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0013 Score=63.97 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=223.1
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEIN-SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 87 (516)
.+|-+.|+.=..+|+..|++++|++=-.+-++. .|+ .-.|+....++.-.|++++|+..|..-++.. +.+...++.
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHh
Confidence 458889999999999999999998876666654 555 5678999999999999999999998877764 555566777
Q ss_pred HHHHHHHcC---------------------------------------------------CHHHHHHHHccc--------
Q 043362 88 LMTMYVKCG---------------------------------------------------SVDYGRKLFDQV-------- 108 (516)
Q Consensus 88 ll~~~~~~g---------------------------------------------------~~~~A~~~f~~~-------- 108 (516)
|.+++.... .+..|.-.+...
T Consensus 110 l~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~ 189 (539)
T KOG0548|consen 110 LAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYAS 189 (539)
T ss_pred HHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccc
Confidence 776662110 011111111100
Q ss_pred --------CCC-----C----c-------------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 109 --------PEK-----G----L-------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 109 --------~~~-----~----~-------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
..| + + .-.-.+.++.-+..++..|++-+....+.. -+..-++....++
T Consensus 190 ~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 190 GIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVY 267 (539)
T ss_pred ccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHH
Confidence 000 0 0 124446666677778888888888777653 3333445556678
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSN------PFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~ 230 (516)
...|.+.+....-...++.|...- ......+..+|.+.++++.|...|.+...+ +.. ...+....
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~ 340 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEA 340 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHH
Confidence 888877777776666665543211 112223455788888999999999875421 211 12233345
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
++++.......- +.|... -...-...+.+.|++..|...|.+++.+ -+-|...|....-.|.+.|.+..|+.=.+
T Consensus 341 Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 341 EKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555443 334331 1222356678899999999999999865 24478889999999999999999887666
Q ss_pred hcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 310 SML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 310 ~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
... ..|+ ...|.-=..++....+++.|...|.+.++.+|++......+..++..
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 554 4454 55565556667777899999999999999999887655555554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.3e-07 Score=53.52 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI 45 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 45 (516)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999987
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00029 Score=74.71 Aligned_cols=168 Identities=11% Similarity=0.002 Sum_probs=108.8
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHc
Q 043362 47 SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126 (516)
Q Consensus 47 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 126 (516)
...+..|+..+...+++++|.++.+..++.. +.....|-.+...|.+.++.+++..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456667777777777777777777555542 22233333333356666665544433 233444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 206 (516)
.++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4453344444455442 3345577778888888888888888888888876 56788888888888888 888888877
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 207 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
.+. +..|...+++.++.++|.++...
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 654 33366667778888888887774
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=65.45 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
....-.+...+...|++++|..+|+-.. ..| +..-|-.|...+...|++++|+..+.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3444556667788999999999999876 455 58889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 043362 363 EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~ 379 (516)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998864
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00075 Score=64.14 Aligned_cols=209 Identities=9% Similarity=-0.006 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 83 SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNG-LATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 83 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
.++..+-..+...+..++|+.+.+.+.+.+. .+|+..-..+...| ++++++..++++.+.. +-+..+|+...-.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3566666777788899999999999876554 56776666777777 6799999999998764 33445666655555
Q ss_pred HhcCCh--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc---CCH
Q 043362 159 AHLGAH--SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIH---GHG 230 (516)
Q Consensus 159 ~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~---g~~ 230 (516)
.+.|.. +.+..+.+.+++.. +.+..+|+....++.+.|+++++.+.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 566653 56677777777764 45677777777777777888888888877753 3566777666555443 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 043362 231 ----EVAVQLFDEMLKSGIRPDGTAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296 (516)
Q Consensus 231 ----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 296 (516)
+++++...++.... +-|...|+.+...+.. .+...+|...+...... -..+......|++.|+
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHH
Confidence 34455554554431 2344455555555544 12334455555444321 1123344445555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00053 Score=66.10 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVD 293 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 293 (516)
.+--....+...|++++|+..++.+... .|| ..........+...++.++|.+.++++... .|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 3333444455677888888888887764 344 444445556777788888888888888743 555 555666777
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
+|.+.|+..+|..+++... ..| |+..|..|..+|...|+..++... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 8888888888888877765 234 577888888888888877666544 334566678888888
Q ss_pred HHHHHHHhC
Q 043362 372 RVRMMMRER 380 (516)
Q Consensus 372 ~~~~~m~~~ 380 (516)
.......+.
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 887777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=52.38 Aligned_cols=34 Identities=38% Similarity=0.753 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 147 (516)
++||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=64.79 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=49.6
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
.+......|++..|...+.+... .-++|...|+.+.-+|.+.|++++|..-|.+.. ..| +....+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 33344444444444444444432 223344444444444444444444444443332 122 23344444444444444
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
.+.|..++.......+.+...-..|..+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 44444444444444443444444444444444444444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00059 Score=65.75 Aligned_cols=177 Identities=17% Similarity=0.096 Sum_probs=127.8
Q ss_pred CHHHHHHHHhcCCC------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 198 NLKKARAIFDGMPR------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 198 ~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
++.++++.-+.++. ++...+...+.+.........+-.++- +... ..-...-|...+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 34555555566653 244445555554333222222222222 2221 111222333333 45567899999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+..+... .+-|+..+....+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|++.+|+..++.....+|+
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998864 34467777788899999999999999999987 5676 778888899999999999999999999999999
Q ss_pred CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 350 NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
++..|..|+.+|...|+..++.....++..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999998887753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00033 Score=61.63 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=111.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 186 NNALINMYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 186 ~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
|.-++-+...+|+.+.|...++.+..+ -+.-..+| -+-..|++++|+++++.+.+.. +.|.+++.-=+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 334444445556666666655554322 11111111 2334678888888888888764 456666665555556
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh---cCCHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI---HKNVEL 335 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~---~g~~~~ 335 (516)
..|.--+|++-+....+ .+..|.+.|.-+...|...|++++|.-.++++. ..| +...+..+...+-. ..+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788888887776 467799999999999999999999999999987 567 45555555555332 347888
Q ss_pred HHHHHHHHhhcCCCCccchH
Q 043362 336 AELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~ 355 (516)
|.+.+.+.+++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 99999999999986554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00065 Score=60.28 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcC
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHG 228 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g 228 (516)
...-.++...|+-+....+....... .+.|..+.+.++....+.|++..|...|.+.. .+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455566666666665555553332 24455566667777778888888888887765 346778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
++++|..-|.+..+. ..-+...++.+.-.+.-.|+.+.|..++...... -.-|..+-..|.......|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888887774 1223456667777777778888888887777642 2236666677777777888888888776
Q ss_pred Hhc
Q 043362 309 ESM 311 (516)
Q Consensus 309 ~~m 311 (516)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.5e-05 Score=72.76 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
...+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.. ..| +..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3446677777888999999999999865 344 44567888888888899999988876 334 5666666667788
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..++++.|+.+++++.+..|++..+|..|+.+|...|+++.|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=75.64 Aligned_cols=214 Identities=9% Similarity=0.087 Sum_probs=143.6
Q ss_pred CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043362 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF-VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190 (516)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 190 (516)
+...|..|+..|...+++++|.++.+...+. .|+...+ ..+...+.+.++...+..+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI--------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------
Confidence 3578999999999999999999999977664 5665433 3333356666666555544 222
Q ss_pred HHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 268 (516)
+...+..++.-..-+...|.+ .+..++-.+..+|.+.|+.++|..+|+++.+.. +-|....+.+.-.++.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222223222222222221 133466678888888899999999999988865 44677788888888888 88888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---------------------CCCHHHHHHHHHH
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V---------------------EPDGAVWGALLGA 326 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---------------------~p~~~~~~~ll~~ 326 (516)
.+++.++... |....++.++.+++.++. . ..-+.++-.+-..
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 8888877654 333334444444444433 1 1223445555577
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 888899999999999999999999888888888876
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0013 Score=66.14 Aligned_cols=261 Identities=11% Similarity=0.110 Sum_probs=149.6
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCch--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEKGLI--TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 166 (516)
+.+-....++.+|..+++.+...++. -|..+...|+..|+++.|.++|.+.- .++-.+..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445566777777777777665543 35566667777777777777775431 23445666777777777
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
|.++-.+. .|.......|-+-..-.-+.|++.+|.++|-.+..|+. .|..|-++|..+..+++..+-....
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~-- 880 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH-- 880 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh--
Confidence 76655443 23344455566666666677777777777777766654 3566777777777777666532211
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCCHHHHHH
Q 043362 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV----EPDGAVWGA 322 (516)
Q Consensus 247 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ 322 (516)
-..|-..+..-+...|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-.- +.-...|.-
T Consensus 881 -l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 881 -LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 12344455566666777777777665443 245566777777777777766654320 001222221
Q ss_pred HH------HHHHhcCCHHH-------------HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 323 LL------GACKIHKNVEL-------------AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 323 ll------~~~~~~g~~~~-------------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
-+ ...-++|-++. |..+.+-..+- .-+.....++..+...|++++|.+-+-+..+.
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 11 12223333333 33333322221 12345666777777888888886666555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-05 Score=63.73 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
.....+...+...|++++|.+.++... ..| +...|..+...+...|+++.|...++++.+.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445555666667777777777776654 234 466666667777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 043362 364 ARNLDGIMRVRMMMRER 380 (516)
Q Consensus 364 ~g~~~~a~~~~~~m~~~ 380 (516)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=57.92 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+|-..+..-.+..-...|..+|.+..+.+..+ +....++++..++ .++.+.|.++|+.=.+++|- ++.--...++-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 45556666666677788888888888877777 5556666666555 46788888888877765442 44455677888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ccchHHHhhHHHHcC
Q 043362 295 LGRAGQLNEALELIESMLV---EP--DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN----TGYYVLLSNIYSEAR 365 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~~---~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 365 (516)
+...++-..|..+|++... .| ....|..+|.--..-|++..+.++-++....-|.+ ...-..+++.|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 8888888888888888751 23 25788888888888888888888887776655421 112344556666555
Q ss_pred ChhHHHHHHHHH
Q 043362 366 NLDGIMRVRMMM 377 (516)
Q Consensus 366 ~~~~a~~~~~~m 377 (516)
....-..-++.|
T Consensus 525 ~~~c~~~elk~l 536 (656)
T KOG1914|consen 525 LYPCSLDELKFL 536 (656)
T ss_pred cccccHHHHHhh
Confidence 554444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00061 Score=71.45 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
+..+-.|.....+.|.+++|..+++...+. .||. .....+..++.+.+.+++|....++..... +.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 445555666666666666666666666653 4543 344555566666666666666666666654 334555555666
Q ss_pred HHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 192 MYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
++.+.|++++|.++|++...+ +..+|..+..++-..|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665532 2445555556666666666666666665553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-06 Score=49.60 Aligned_cols=31 Identities=48% Similarity=0.827 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGV 43 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 43 (516)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.8e-06 Score=49.72 Aligned_cols=33 Identities=39% Similarity=0.615 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 146 (516)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=70.87 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
-.+|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++++.... .+-|...+..-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 3445555666677888888888887777766667777777777777888887777754 233555555555667777777
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77877777777753 3445577777777777777777777777766
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0045 Score=55.14 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=98.6
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
+.+.+.......+......-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|...+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3444444433334333334445577778888888877764322333322 34455667777788888887762 245
Q ss_pred HHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHH
Q 043362 250 TAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGAL 323 (516)
Q Consensus 250 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l 323 (516)
.|.+.|.+++.+ .+.+..|.-+|++|.+ ...|++.+.+.........|++++|..+++... .. .++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 566656555543 3456677777777764 245666666666666666777777777776665 11 234444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhcCCCC
Q 043362 324 LGACKIHK-NVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 324 l~~~~~~g-~~~~A~~~~~~~~~~~p~~ 350 (516)
+..-...| +.+...+...++....|..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 44433333 3344455556666655554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00017 Score=59.51 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=87.0
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 043362 236 LFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313 (516)
Q Consensus 236 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 313 (516)
.|++... ..|+ ......+...+...|++++|.+.+..+... -+.+...+..+...|.+.|++++|...+++.. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 3443 344566777788889999999999888753 23467788888889999999999999888775 3
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 314 EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 314 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.| +...+..+...+...|+.+.|...+++.++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5777778888899999999999999999999998764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0018 Score=57.63 Aligned_cols=243 Identities=11% Similarity=0.032 Sum_probs=149.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 199 (516)
++-|.-.|.+..++..-...... +-+...-.-+-++|...|...... ..+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566667777776655444332 234445555666777776654332 2222222 33334444333333334443
Q ss_pred HHH-HHHHhcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 200 KKA-RAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 200 ~~A-~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
++- .++.+.+..+ +......-...|...|++++|++...... ..+ ....=...+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233333322 22333333456888899999998887621 112 222223345567788889999998
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
|.+- -+..+.+.|..++.+ .+.+.+|.-+|++|. ..|+..+.+-...++...|++++|+.+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8742 244556656666553 467889999999987 457888888888889999999999999999999999
Q ss_pred CCccchHHHhhHHHHcCChhHHH-HHHHHHH
Q 043362 349 MNTGYYVLLSNIYSEARNLDGIM-RVRMMMR 378 (516)
Q Consensus 349 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 378 (516)
+++.+...++-.--..|...++. +.....+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 88888888877777777765544 3444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.037 Score=57.55 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCC
Q 043362 319 VWGALLGACKIHKNV---ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 384 (516)
+-+.|+..|.+.++. -+|+.+++......|.|..+-..|+.+|.-.|-+..|.+.++.+.-+.+..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 345677888887765 467778888888889998888899999999999999999999886655543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=55.14 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
+..+...+...|++++|...+++.. ..| +...+..+...+...++++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456666777888888888887764 334 34666677777788888888888888888888877777888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 043362 366 NLDGIMRVRMMMRE 379 (516)
Q Consensus 366 ~~~~a~~~~~~m~~ 379 (516)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.023 Score=52.57 Aligned_cols=291 Identities=13% Similarity=0.070 Sum_probs=208.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHH---HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM---ISGYAQNGLATHVLELYREMKSLGVCPDAVTFV-GVLSSCAH 160 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~ 160 (516)
.--|-+.+...|++.+|+.-|....+.|+..|.++ ...|...|+...|+.-+.+..+ ++||-..-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 34455666678888899988888888877666554 4578888888888888888876 467754322 22345678
Q ss_pred cCChHHHHHHHHHHHHcCCCCc--hHHH------------HHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSN--PFLN------------NALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGG 223 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~--~~~~------------~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 223 (516)
.|.+++|..=|+.+++.....+ ..++ ...+..+...|+...|++....+.+ .|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 8899999998888887642111 1111 2233445667888888888877653 377788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHH----HHHH---H----
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH----YTCM---V---- 292 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---i---- 292 (516)
|...|.+..|+.=++...+.. ..+..++.-+-..+-..|+.+.++...++-. .+.||-.. |..| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999998888776643 3455666677777888999998888777776 56776432 2221 1
Q ss_pred --HHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 293 --DLLGRAGQLNEALELIESML-VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 293 --~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
....+.+++.++.+-.+... ..|. ...+..+-..+...+++.+|++...++++++|++..++.--+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 12234566666666555443 3454 223444556678889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 043362 365 RNLDGIMRVRMMMRERR 381 (516)
Q Consensus 365 g~~~~a~~~~~~m~~~~ 381 (516)
..+++|..-++...+.+
T Consensus 355 E~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2e-05 Score=46.14 Aligned_cols=31 Identities=39% Similarity=0.789 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGV 144 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 144 (516)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=54.44 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--HHHHHHHH
Q 043362 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD---GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMV 292 (516)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 292 (516)
..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3334443 3566666666666666542 111 122223344556666666666666666653 21121 11233445
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 293 DLLGRAGQLNEALELIESMLVE-PDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
..+...|++++|+..++..... .....+......+...|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5566666666666666554311 12344444455566666666666665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.038 Score=54.26 Aligned_cols=128 Identities=11% Similarity=0.061 Sum_probs=83.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
|+.+|+.||+-+-.. .++++.+.++++... .+-....|..-+..-....+++....+|.+.+..- .+...|..-++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 899999999877655 899999999999854 23345567777888888999999999999988764 34666666665
Q ss_pred HHHH-cCCHHHH----HHHHcccCC---CC---chHHHHHHHH---------HHHcCChhHHHHHHHHHHHC
Q 043362 91 MYVK-CGSVDYG----RKLFDQVPE---KG---LITWNAMISG---------YAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 91 ~~~~-~g~~~~A----~~~f~~~~~---~~---~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 142 (516)
---+ .|+...+ .+.|+-..+ -| -..|+..+.- |..+.+.+...++|+++...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 3322 2332221 122222111 12 2346555432 44455677777788887653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.035 Score=52.75 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
+||..+...-.+.|+.+-|..+++. .|+..-= +..+...++.+.| +...+++| .||. +|..|+.+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L 65 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHL 65 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHH
Confidence 5788888888889999999887654 4443221 2233344554444 44555555 4443 33444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00053 Score=54.97 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLG 325 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~ 325 (516)
+..+...+...|++++|...|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555554311111 12334445555666666666666665543 1222 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+...|+.++|...++++.+..|++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 66666666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0021 Score=53.70 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=56.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHH
Q 043362 126 NGLATHVLELYREMKSLGVCPDA---VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLK 200 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~ 200 (516)
.++...+...++.+.... +.+. ...-.+...+...|++++|...|+.+......++ ....-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555666655566655542 1121 1222233445556666666666666665442222 122333455555666666
Q ss_pred HHHHHHhcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 201 KARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 201 ~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
+|...++....+ ....+......|...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666554322 223444455555666666666665554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00041 Score=55.59 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVLL 357 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 357 (516)
.++..++..+.+.|++++|.+.++.+. ..|+ ...+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888899999999999999886 2343 3466678888999999999999999999988875 4568889
Q ss_pred hhHHHHcCChhHHHHHHHHHHhCC
Q 043362 358 SNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 358 ~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=52.21 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC-ChhHHHHHHHHHHh
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR-NLDGIMRVRMMMRE 379 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 379 (516)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888888899999999999999999999999999999999999998 79999998887754
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=61.45 Aligned_cols=155 Identities=12% Similarity=0.022 Sum_probs=111.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHH-------------H
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH-------------Y 288 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 288 (516)
.++...|++++|...--...+.. ..+......=-.++--.++.+.|...|++.+ .+.|+-.. +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 35667888888887776666532 1122222111223345678888888888877 34554222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-V-----EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~-----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
..=.+...+.|++.+|.+.+.+.. + +|+...|.....+..+.|+.++|+.-.+++..++|.-..+|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 222345567899999999998876 3 3456667777777889999999999999999999988888889999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 043362 363 EARNLDGIMRVRMMMRER 380 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~~ 380 (516)
..++|++|.+-++...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999987653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.5e-05 Score=57.04 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHH
Q 043362 299 GQLNEALELIESML-VEP---DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 299 g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
|++++|..+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555555443 112 233344445555555555555555555 4444444444445556666666666666555
Q ss_pred HH
Q 043362 375 MM 376 (516)
Q Consensus 375 ~~ 376 (516)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0029 Score=64.36 Aligned_cols=139 Identities=19% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCHhHHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CChHHHHHHHHHhH
Q 043362 211 RKTVVSWTAIIGGYGIH--G---HGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHA--------GLTDKGLEYFYGMK 276 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 276 (516)
..|..+|...+.+.... + ...+|..+|++..+. .|+- ..+..+..++... .++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34667777777765432 2 256788888887773 5553 3333332222111 01122222222221
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 277 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.......++..|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|...++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 110112233444444444444555555555555554 445555555555555555555555555555555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0064 Score=60.55 Aligned_cols=268 Identities=16% Similarity=0.133 Sum_probs=144.5
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHH---------HHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHH--HHHHHHhCC
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLF---------GKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC--HCICVKFGL 78 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~---------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~ 78 (516)
+..+.+.+=+-.|...|.+.+|..+- +.+-.. ..+.--++..=++|.+.++..--+-+ ++.+.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34455666666778888888877541 111111 11223344444566655555443333 345566665
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 158 (516)
.|+... +...++-.|.+.+|.++|.+ +|....|+++|..|+--. ...-+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~ 680 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEF 680 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHH
Confidence 566543 44556667888888887755 455555666665554210 11223
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
...|..++-..+.++-.+.. .++.--.+-..++...|+.++|..+ ...+|-.+-+.++-+
T Consensus 681 ~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIAR 740 (1081)
T ss_pred hhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHh
Confidence 33444444333333221110 0111112344555667777776544 234555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH
Q 043362 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDG 317 (516)
Q Consensus 239 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 317 (516)
++.. .+..+...+...+.+...+..|.++|.+|-.. ..++++....+++++|..+-++.| ..||+
T Consensus 741 kld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 741 KLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 5433 23445555555566677777888888877532 467788888888999888888877 33443
Q ss_pred HH-HH----------HHHHHHHhcCCHHHHHHHHHHHh
Q 043362 318 AV-WG----------ALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 318 ~~-~~----------~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
.. |. -.-.+|.+.|+-.+|.++++++.
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 21 11 11244555566666666666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=59.84 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA-CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233444444333 33457778899999999975 4557788999999
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 294 LLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+.+.|+.+.|..+|++.. .-|. ...|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999987 2233 35999999999999999999999999999887753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00051 Score=62.17 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=71.8
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~ 335 (516)
..+.+++++|...|..+++ +.| |+..|..-..+|.+.|.++.|.+=.+... ..|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556778888888877773 454 45556666778888888888877766665 4554 6778888888888888888
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhH
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
|++.|++.++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887544444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00089 Score=65.09 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=58.0
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
...+...|++++|...|.++++. -+.+...|..+..+|.+.|++++|...++++. ..| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33445556666666666666642 12244555566666666666666666666654 334 355566666666666666
Q ss_pred HHHHHHHHHHhhcCCCCccchHH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
++|+..|+++++++|+++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 66666666666666666544333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0087 Score=52.99 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
|..++-+....|+.+-|...++++... + |... .-..-..-+-..|.+++|.++++.+.++ . +.|..++-.=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHH
Confidence 334555667789999999999998876 3 4432 2221222345578999999999999975 2 34566676666677
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC---ChhHH
Q 043362 296 GRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR---NLDGI 370 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 370 (516)
-..|+--+|++-+.... +-.|...|.-|...|...|+++.|.-.+++++-+.|.++..+..++..+...| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77788777777665544 44689999999999999999999999999999999999988889999887665 46667
Q ss_pred HHHHHHHHhCC
Q 043362 371 MRVRMMMRERR 381 (516)
Q Consensus 371 ~~~~~~m~~~~ 381 (516)
.+++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 77887776543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=49.88 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554431 1122333344444444444555544444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0029 Score=54.69 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=82.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYT 289 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 289 (516)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445666677777778888888888887776433322 345667777777788888888887777643 33 345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 290 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
.+...|...|+...+..-++... ..+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666666555443322211 12577888888888888876 4555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=50.07 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...+...|++++|+..|+++++..|+++..+..++.++...|++++|..+++.+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777777777777777776666677777777777777777777666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.088 Score=50.05 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 328 (516)
..+.+..+.-|...|....|.++-... . .|+..-|-..+.+|+..+++++-.++... +..+.-|...+.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345666677778888888877765444 4 37888999999999999999998887654 345688899999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999998887772 22456788999999999987754443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0019 Score=62.80 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhc
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRA 298 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 298 (516)
-...+...|++++|+++|++..+.. +-+...|..+..++...|++++|...++++.+. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999863 345677888888999999999999999999853 44 577888999999999
Q ss_pred CCHHHHHHHHHhcC-CCCCHHHHHHHH
Q 043362 299 GQLNEALELIESML-VEPDGAVWGALL 324 (516)
Q Consensus 299 g~~~~A~~~~~~m~-~~p~~~~~~~ll 324 (516)
|++++|...|++.. ..|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999876 556544444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00047 Score=48.52 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=49.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+...+.+.|++++|.+.|++.. ..| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999999886 446 478888888999999999999999999999999864
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=56.54 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
.+..+...|...|++++|...|++.. ..|+ ...+..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555555666666666666666553 1121 345666667777777777777777777777777777777777777
Q ss_pred HHcCC
Q 043362 362 SEARN 366 (516)
Q Consensus 362 ~~~g~ 366 (516)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 66665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0024 Score=49.06 Aligned_cols=82 Identities=23% Similarity=0.179 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCchH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGV-CPDAVTFVGVLSSCAHLG--------AHSVGLEVEQQIQANGFGSNPF 184 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~ 184 (516)
.+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3455677777888999999999999999999 999999999999877653 2445677899999999999999
Q ss_pred HHHHHHHHHHh
Q 043362 185 LNNALINMYAR 195 (516)
Q Consensus 185 ~~~~li~~y~~ 195 (516)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.089 Score=54.89 Aligned_cols=122 Identities=15% Similarity=0.213 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHcccCCCCc-hHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGL-ITWNAMISG--YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~-~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
..+++.+|.+..+++.++-+ ..|...+.+ ..+.|..++|..+++.....+.. |..|...+-..|...+..+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566666666666544322 223333333 34667777777666665544322 566676677777777777777777
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHH----HHHHHhcCCCCCHhHHH
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKK----ARAIFDGMPRKTVVSWT 218 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~m~~~~~~~~~ 218 (516)
|+++.... |+......+..+|.+.+++.+ |.+++...+++--..|+
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 77776642 345555556666666665543 45555555554444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0004 Score=62.85 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
+-+.+.+++++|+..|.+.. +.| |.+.|..-..+|.+.|.++.|.+-.+..+.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999999887 566 6788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9998877653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=56.18 Aligned_cols=93 Identities=12% Similarity=-0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
...|..+...+...|++++|...|++.. ..|+ ..+|..+...+...|+.++|+..++++.++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556666777777888888888888764 2222 3578888888999999999999999999988888888888888
Q ss_pred HHH-------HcCChhHHHHHHHHH
Q 043362 360 IYS-------EARNLDGIMRVRMMM 377 (516)
Q Consensus 360 ~~~-------~~g~~~~a~~~~~~m 377 (516)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 777887666666544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0027 Score=48.81 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCC-CCChhhHHHHHHHhhcCCC--------chHHHHHHHHHHHhCCCCChhHHH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGY--------LWLGMCCHCICVKFGLDLDFSVGN 86 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 86 (516)
...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+++.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677777999999999999999999 9999999999998876432 345678899999999999999999
Q ss_pred HHHHHHHH
Q 043362 87 CLMTMYVK 94 (516)
Q Consensus 87 ~ll~~~~~ 94 (516)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.031 Score=52.60 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHHhC-CCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-H
Q 043362 188 ALINMYARC-GNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-----PDGT-A 251 (516)
Q Consensus 188 ~li~~y~~~-g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t 251 (516)
.+...|.+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|.++|++....-.. ++.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 555555555544321 01 123344555566666666666666665543221 1111 2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHh-cCCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHhcC
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNK-YGLQPG--PEHYTCMVDLLGR--AGQLNEALELIESML 312 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 312 (516)
|...+-.+...|++..|...+++.... .++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 222233444456666666666665422 112222 2234444555532 234555666666553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.16 Score=48.09 Aligned_cols=296 Identities=14% Similarity=0.104 Sum_probs=192.9
Q ss_pred cHHHHHHHHHh--CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhh--cCCCchHHHHHHHHHHHhCCCCChhH--HHH
Q 043362 14 CYNALISGYVL--NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV--DPGYLWLGMCCHCICVKFGLDLDFSV--GNC 87 (516)
Q Consensus 14 ~~n~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 87 (516)
-|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..+|.+-. -.|+++.|++-|+.|+.. |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35566666654 57777777776655432 4667777888887654 459999999999999753 33222 222
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHh-
Q 043362 88 LMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAV--TFVGVLSSCAH- 160 (516)
Q Consensus 88 ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 160 (516)
|.----+.|+.+.|..+-+...+.- ...|.+.+...+..|+++.|+++.+.-++.. +.++.. .-..|+.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 3223346788888888877664432 3688899999999999999999998876542 445543 22334443221
Q ss_pred --cCChHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHH
Q 043362 161 --LGAHSVGLEVEQQIQANGFGSNPFL-NNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 161 --~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~ 235 (516)
..+...|+..-.+..+. .||..- --.-..+|.+.|++.++-.+++.+-+ |.+..|. +-.+++.|+ .++.
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHH
Confidence 23456666666666553 444322 22345668899999999999988754 3333333 223345554 4444
Q ss_pred HHHHHHH-cCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhcC
Q 043362 236 LFDEMLK-SGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQLNEALELIESML 312 (516)
Q Consensus 236 ~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 312 (516)
=+++... ..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+-+..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 4444332 124555 4667778888889999998888777665 458888899888887655 499999999988876
Q ss_pred CCCCHHHHHH
Q 043362 313 VEPDGAVWGA 322 (516)
Q Consensus 313 ~~p~~~~~~~ 322 (516)
..|....|..
T Consensus 391 ~APrdPaW~a 400 (531)
T COG3898 391 KAPRDPAWTA 400 (531)
T ss_pred cCCCCCcccc
Confidence 4555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0034 Score=57.25 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 282 QPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGALLGACKI---HKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
+-|...|-.|...|.+.|+++.|..-|.+.. .. ++...+..+..++.. .....++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 3478899999999999999999999998876 33 457777776666432 235678999999999999999999999
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
|+..+...|++.+|...++.|.+...+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=49.49 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 304 (516)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654221 1233344455666666666666666655 21 111 122223345556666666666
Q ss_pred HHHHHh
Q 043362 305 LELIES 310 (516)
Q Consensus 305 ~~~~~~ 310 (516)
.+++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.021 Score=53.71 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=62.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA-GLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLL 295 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 295 (516)
+..|...|++..|-.++.+ +...|... |++++|.+.|.+..+-+.-... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4445555555555444443 33345555 6777777777666544322222 23455667778
Q ss_pred HhcCCHHHHHHHHHhcC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 296 GRAGQLNEALELIESML---V-----EPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+.|++++|.++|++.. . +.+.. .+-..+-.+...||+..|...+++....+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888887654 1 11111 2222333455678888888888888887764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.023 Score=50.64 Aligned_cols=167 Identities=11% Similarity=0.014 Sum_probs=111.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCC--CCc--------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVPE--KGL--------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGV 154 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 154 (516)
+++|...|.-..-+.+-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+-++...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555444444444444443322 222 24456777777788888888888888887656677778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHh
Q 043362 155 LSSCAHLGAHSVGLEVEQQIQAN-----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGI 226 (516)
Q Consensus 155 l~~~~~~g~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~ 226 (516)
.+.--+.|+.+.|...++...+. ++..+..+..+....|.-.+++..|...|.+++.. |++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888899999999999877663 33333444444555677778888888888877643 55666665556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
.|+..+|++..+.|.+. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78888888888888874 44444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0036 Score=61.16 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 152 (516)
+.+......+++......+++.+..++.+..... ..|..++++.|.+.|..++++.+++.=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455556667777777777888888877665321 2466799999999999999999999888899999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
.+|..+.+.|++..|.++...|...+.-.+..++.--+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0047 Score=57.89 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHH-hhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI-CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
.+|-.++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578888988888888999999999998553 2233344333333 33346777799999998887 57788889999999
Q ss_pred HHHcCCHHHHHHHHcccCCC------CchHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 043362 92 YVKCGSVDYGRKLFDQVPEK------GLITWNAMISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887653 1247888888888888888888888887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=46.93 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHK-NVELAELAFGKVIKLEP 348 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 348 (516)
++..|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677888888888899999998888876 445 4778888888888888 79999999999988877
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0004 Score=49.41 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..|++++|+..++++.+..|++..++..++.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777777777777766543
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0027 Score=52.83 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=77.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhH
Q 043362 292 VDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 369 (516)
.--+...|++++|..+|.-+. ..| +..-|..|...+...++++.|+..|..+..++++|+.++...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 344557899999999998765 333 677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 043362 370 IMRVRMMMRE 379 (516)
Q Consensus 370 a~~~~~~m~~ 379 (516)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=48.03 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..|...++++.|..++++++.++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888887654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0091 Score=49.45 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
+......+...+...|++++|..+|+.+.... +-+..-|-.+..+|-..|++++|...|....... +.|+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444455555666777777777777666532 2233445556666666677777777777776665 345555556666
Q ss_pred HHHhCCCHHHHHHHHhc
Q 043362 192 MYARCGNLKKARAIFDG 208 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~ 208 (516)
+|.+.|+.+.|++.|+.
T Consensus 112 c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 112 CYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 67777777777666664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.047 Score=49.88 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
.+..-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 344455566666666666666665543333 23344555566666666666665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.017 Score=46.08 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchHHHHHHHHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG--SNPFLNNALINMYA 194 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~ 194 (516)
+..++-..|+.++|+.+|++....|...+ ...+..+.+++...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888877775544 235556667777788888888888777664211 12222223334556
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 043362 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 224 (516)
..|+.++|.+.+-...-++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776665544333333444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00086 Score=47.64 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=28.1
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVW 320 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~ 320 (516)
..|++++|.++|+.+... .+-+...+..++..|.+.|++++|.++++++. ..|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345555555555555543 11144444455555555555555555555554 33443333
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0036 Score=59.00 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=89.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhH---HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCCHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMK---NKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--------VEPDGA 318 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~ 318 (516)
.|..|.+.|.-.|+++.|+..++.-. +.+|-.. ....+..|.+.+.-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667788888887766432 2233221 23456777888888899999988887643 112356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLE------PMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
+.-+|..+|....+++.|+..+.+-+.+. .....++..|+++|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66778888888888999998887755421 2344678899999999999999988766554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.077 Score=50.99 Aligned_cols=161 Identities=20% Similarity=0.103 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 188 ALINMYARCGNLKKARAIFDGMPRK-------TVVSWTAIIGGYGI---HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
.|+-.|....+++...++++.+... ....--...-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777776543 11122223444555 6778888888887665556677777776665
Q ss_pred HHhc---------cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HhcC-------CC
Q 043362 258 ACSH---------AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN----EALELI---ESML-------VE 314 (516)
Q Consensus 258 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m~-------~~ 314 (516)
.|-. ....++|...|.+.- .+.|+..+--.++..+...|.-. +..++- .... ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 223667777776554 44555443333333344444321 222221 1110 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.|-..+.+++.++.-.|+.+.|.+..+++.++.|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4667778899999999999999999999999887643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=50.44 Aligned_cols=80 Identities=18% Similarity=0.100 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCP--DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 456666667777777777777777776542222 12356666666777777777777777766542 222344444554
Q ss_pred HHH
Q 043362 192 MYA 194 (516)
Q Consensus 192 ~y~ 194 (516)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.083 Score=44.66 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHH
Q 043362 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP---DGAVW 320 (516)
Q Consensus 245 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 320 (516)
..|+...-..|..+....|+..+|...|.+...- -+.-|....-.+.++....+++.+|...+++.. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4667667777888888999999999999888752 344577777888888888899988888887764 112 22333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
-.+...+...|.+..|+..|+.+...-|+ +..-......+.+.|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667788899999999999999887774 34555566778888888777665554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.029 Score=44.75 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLG 296 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 296 (516)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999988876654 34666788888899999999999998886521111 2222233445677
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043362 297 RAGQLNEALELIESMLVEPDGAVWGALLGA 326 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 326 (516)
..|+.++|...+-... .++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8899999888776543 2333344433333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=57.44 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=103.8
Q ss_pred HHHHhHH---CCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHcCCHHHHHHHHccc
Q 043362 34 LFGKMRE---QGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG--LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108 (516)
Q Consensus 34 l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~ 108 (516)
++..|.+ .+.+.+...+..++..+....+++.+..++-...... ...-..+..+++..|.+.|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444433 3456677788889999999999999999888776652 2233456679999999999999999999876
Q ss_pred CC----CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043362 109 PE----KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161 (516)
Q Consensus 109 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 161 (516)
.. +|..++|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 55 456899999999999999999999999998888788888888888887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.057 Score=55.13 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHH
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAV 319 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~ 319 (516)
+...+..+.......|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.. ..|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 334555554444455677777777777663 34566666677777777777777777766654 3444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.31 Score=44.54 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-VTF---VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 188 (516)
...+-.....+.+.|++++|.+.|+++... -|+. .+- -.+..++.+.+++++|...+++.++.-......-+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 333444555566677888888888877764 2332 221 2344566677777777777777766432211112222
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 043362 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 268 (516)
.+.+.+.. ......|......+.. ........+|+..|+++.+. -|+.. -.++|
T Consensus 110 Y~~g~~~~---~~~~~~~~~~~~~~~~--------~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A 163 (243)
T PRK10866 110 YMRGLTNM---ALDDSALQGFFGVDRS--------DRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDA 163 (243)
T ss_pred HHHHHhhh---hcchhhhhhccCCCcc--------ccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHH
Confidence 22221100 0000011111000000 00001123555666666653 34432 23444
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML----VEP-DGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
...+..+... =..+--.+...|.+.|.+..|..-++.+. ..| .......+..+|...|..++|......+
T Consensus 164 ~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 164 TKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4433333321 11222355677888888887777776665 112 3455666778888889988888876654
Q ss_pred h
Q 043362 344 I 344 (516)
Q Consensus 344 ~ 344 (516)
.
T Consensus 239 ~ 239 (243)
T PRK10866 239 A 239 (243)
T ss_pred h
Confidence 3
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0086 Score=52.04 Aligned_cols=89 Identities=17% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCCchHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 043362 110 EKGLITWNAMISGYAQN-----GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL----------------GAHSVGL 168 (516)
Q Consensus 110 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------g~~~~a~ 168 (516)
.++-.+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34445555555555432 45555555666666667777777777776654321 2445677
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 043362 169 EVEQQIQANGFGSNPFLNNALINMYARCGN 198 (516)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 198 (516)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=51.09 Aligned_cols=97 Identities=16% Similarity=0.337 Sum_probs=71.6
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 043362 203 RAIFDGM--PRKTVVSWTAIIGGYGI-----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA------------- 262 (516)
Q Consensus 203 ~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 262 (516)
.+.|+.. ..+|-.++..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 466777778888899999999999999999876542
Q ss_pred ---CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043362 263 ---GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300 (516)
Q Consensus 263 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 300 (516)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667888888875 4888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.098 Score=46.77 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC----CCCCHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG----LQPGPEHYTCM 291 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l 291 (516)
.-+.++..+.-.|.+.-.+.++.+..+...+-++.....|.+.-.+.|+.+.|..+|++..+..+ +.-+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667778888888888888876666777777888888888999999888887765422 11122222233
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 292 VDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
...|.-++++.+|...+.+++ ..| |+...|.-.-...-.|+...|.+..+.+.+..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334555667777777777776 222 444444433334445778888888888888777543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=54.34 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHHhh
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVLLSN 359 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 359 (516)
|..-+..+.+.|++++|...|+... ..|+ ...+--+...|...|++++|...|+++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555443 2232 1233345555555566666666666665555443 223334455
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 043362 360 IYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 360 ~~~~~g~~~~a~~~~~~m~~ 379 (516)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55556666666666655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00083 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=30.0
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.02 Score=47.78 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh-----CCCCCCC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-----RRLKKDP 386 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 386 (516)
.....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++.+.+ .|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34556777788899999999999999999999999999999999999999999999988853 4665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.32 Score=41.28 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRPDGTAFV 253 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~ 253 (516)
|++..--.|..+....|+..+|...|++.. ..|......+..+....+++..|...++++.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 444444445555555555555555555433 1244444445555555566666666666655532 2233 333
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
.+...+...|...+|+.-|+....- -|+...-......+.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666777677766666633 4555544445555666666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0032 Score=40.15 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
.+|..+..+|...|++++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999887776653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.51 Score=48.15 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=129.0
Q ss_pred CCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh-CC--------CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCch
Q 043362 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKF-GL--------DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114 (516)
Q Consensus 44 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~ 114 (516)
.|.+..|..+.......-.++.|...|-..... |+ -.+.....+=+.+| -|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 577777777766655555556565555332211 11 11112223333444 5999999999999988875
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 190 (516)
.|..+.+.|++-.+.++++.- |-..| ...|+.+...++....+++|.+.|.+-... ..++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 456677788888777766431 11111 356788888888888888888887654321 3466
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 270 (516)
++|.+...+++-+.+-+.+++ |....-.|...+.+.|.-++|.+.|-+-- .|. ..+.+|.+.+++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHH
Confidence 777777777777766666665 34455667788888888888887764421 121 34567777888888777
Q ss_pred HHHHh
Q 043362 271 YFYGM 275 (516)
Q Consensus 271 ~~~~~ 275 (516)
+-++.
T Consensus 900 laq~~ 904 (1189)
T KOG2041|consen 900 LAQRF 904 (1189)
T ss_pred HHHhc
Confidence 66544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0074 Score=43.43 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
..|.+.+++++|.++++.+. ..| +...|......+...|++++|...+++..+..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 56778889999999888876 445 57777778888899999999999999999999877644
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0086 Score=58.15 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEPDG----AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
+...++.+..+|.+.|++++|...|++.. ..|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 45667777777777777777777777754 55652 34777777777777777777777777775321 121111
Q ss_pred --hHHHHcCChhHHHHHHHHHHhCCC
Q 043362 359 --NIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 359 --~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
..+....+.++..++++.+...|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 112223344466666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.045 Score=50.51 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=63.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHH
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLG 325 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~ 325 (516)
|...+....+.|++++|...|+.+.+.+.-.+ .+..+-.+...|...|++++|...|+.+. ..|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333455777777777777776532211 12455567777777788888877777764 1232 444445556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 67778888888888888888888764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.035 Score=44.72 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
...|+..++.+++.+|+..|++..|.++.+...+.|+++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567778888888888888888888888888888787777777777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.78 Score=43.67 Aligned_cols=303 Identities=14% Similarity=0.059 Sum_probs=188.1
Q ss_pred chHHHHHHHHhHHCCCCCChhhHHHHHHHh--hcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHH--HHcCCHHHHHH
Q 043362 28 VSEAVSLFGKMREQGVEINSVTMLCLLPIC--VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMY--VKCGSVDYGRK 103 (516)
Q Consensus 28 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~ 103 (516)
+..+...|..-+.. ..|..|-.++ ...|+-..|++.-.+..+. +..|..-.-.|+.+- .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 45666777665543 2244444433 3457888888877655432 244444444444432 34699999999
Q ss_pred HHcccCCCC-c--hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 043362 104 LFDQVPEKG-L--ITWNAMISGYAQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG- 178 (516)
Q Consensus 104 ~f~~~~~~~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g- 178 (516)
-|+.|...- . .-.-.|.-.-.+.|+.+.|...-.+.-.. -| -.......+...+..|+++.|.++.+.-....
T Consensus 142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999997522 1 12223333446788888888887776543 33 35678889999999999999999998776632
Q ss_pred CCCchHH--HHHHHHHHHh---CCCHHHHHHHHhcCC--CCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043362 179 FGSNPFL--NNALINMYAR---CGNLKKARAIFDGMP--RKTVVSW-TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250 (516)
Q Consensus 179 ~~~~~~~--~~~li~~y~~---~g~~~~A~~~~~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 250 (516)
+.++..- -..|+.+-.. .-+...|...-.+.. .||.+.- -.-..++.+.|+..++-.+++.+-+....|+.
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i- 298 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI- 298 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH-
Confidence 3444322 1223322211 123444544433332 3444332 22346788999999999999999887666653
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH-
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGAC- 327 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~- 327 (516)
...|.+..--+.+..-+++..+-..++|| .+.-..+..+-...|++..|..--+... ..|....|..|...-
T Consensus 299 -----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIee 373 (531)
T COG3898 299 -----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEE 373 (531)
T ss_pred -----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHh
Confidence 22344433334444445555444355664 5566667777778899887776555443 458888887777664
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 043362 328 KIHKNVELAELAFGKVIK 345 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~ 345 (516)
...||-.++.....+.++
T Consensus 374 AetGDqg~vR~wlAqav~ 391 (531)
T COG3898 374 AETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hccCchHHHHHHHHHHhc
Confidence 445999999998888876
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.3 Score=45.89 Aligned_cols=118 Identities=12% Similarity=0.056 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHH
Q 043362 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323 (516)
Q Consensus 244 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 323 (516)
|......|.+--+.-+...|...+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334445566677777888899999988876664 5788888888899999999999888888764 36677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
..+|.+.|+.++|.+.+-+...+ .-...+|.+.|++.+|.+.--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 89999999999998887665322 15678889999999888775443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.016 Score=54.79 Aligned_cols=257 Identities=14% Similarity=0.020 Sum_probs=157.4
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCh----hhHHHHHHHhhcCCCchHHHHHHHHHH--Hh--CCC-CChhHHHHHHH
Q 043362 20 SGYVLNSLVSEAVSLFGKMREQGVEINS----VTMLCLLPICVDPGYLWLGMCCHCICV--KF--GLD-LDFSVGNCLMT 90 (516)
Q Consensus 20 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~ll~ 90 (516)
.-+++.|+....+.+|+..++.|. -|. ..|+.|..+|.-.+++++|.+.|..=+ .. |-. -.......|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 357889999999999999999883 343 346667778888899999999876322 11 100 01112223344
Q ss_pred HHHHcCCHHHHHHHHcc-c---CCCC-----chHHHHHHHHHHHcCC--------------------hhHHHHHHHHH--
Q 043362 91 MYVKCGSVDYGRKLFDQ-V---PEKG-----LITWNAMISGYAQNGL--------------------ATHVLELYREM-- 139 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~-~---~~~~-----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m-- 139 (516)
.+--.|.+++|.-.-.+ + .+.+ ..++..+...|...|+ ++.|.+.|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445666666544222 1 0111 1244446666655443 23344444321
Q ss_pred --HHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CchHHHHHHHHHHHhCCCHHHHHHHHhcCC-
Q 043362 140 --KSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFG-SNPFLNNALINMYARCGNLKKARAIFDGMP- 210 (516)
Q Consensus 140 --~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~- 210 (516)
...|-. .-...|..+.+.|.-.|+++.|+..|+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111100 1123455666666777899999988875433 2311 224567789999999999999999887542
Q ss_pred ------CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 211 ------RKT--VVSWTAIIGGYGIHGHGEVAVQLFDEMLK----SG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 211 ------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
.+. ..+.-++...|.-...+++|+.++.+-.. .+ ..-....+-+|..++...|..++|+.+.....+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 34555678888888889999888876432 11 122346788899999999999999887766553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.65 Score=41.18 Aligned_cols=60 Identities=7% Similarity=-0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGV--CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
.....+.+.|++.+|.+.|+++...-. +--....-.+..++.+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666777777777777665311 011223344555666666777776666666653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.03 Score=53.22 Aligned_cols=64 Identities=16% Similarity=-0.058 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..++..|...|.+.+++..|++...+.++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4556777788899999999999999999999999999999999999999999999999999753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.6 Score=45.19 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=71.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
+.-+...|+..+|.++-.+..-+|-..|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHh
Confidence 3344556778888888887777777777777788888887777665555432 1345666777788888888887
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
.++.+.. |. . -.+.+|.+.|++.+|.++--+
T Consensus 765 KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 7776553 11 1 456777788888777766544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.39 Score=45.94 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=46.4
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH-HHHHHH--HHHHhcC
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP-----GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA-VWGALL--GACKIHK 331 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll--~~~~~~g 331 (516)
.+.|.+..|.+.|...+ ++.| +...|........+.|++++|+.--++.. .-|.. ++..+. .++...+
T Consensus 260 fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655 3333 34445555555666677777766665553 22322 222222 3344556
Q ss_pred CHHHHHHHHHHHhhcCC
Q 043362 332 NVELAELAFGKVIKLEP 348 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p 348 (516)
++++|.+-++++.+...
T Consensus 336 ~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 67777777777766553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.6 Score=41.39 Aligned_cols=57 Identities=18% Similarity=0.076 Sum_probs=35.5
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCC----hhhHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEIN----SVTMLCLLPICVDPGYLWLGMCCHCICVKF 76 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 76 (516)
....+.+.|++.+|...|+.+...- |+ ....-.+..++-+.++++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445667788888888888877652 22 223444556667777777777777776665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.33 Score=48.96 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHhCCC--chHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 13 VCYNALISGYVLNSL--VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 13 ~~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
..++.-=.+|.+-.+ +-+-+.-+++|+++|-.|+.... ...|+-.|.+.+|-++|.+ .|.+ |-.+.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlE 666 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALE 666 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHH
Confidence 334555556665444 33455557888888877887654 3456677889988888754 3422 34456
Q ss_pred HHHHcCCHHHHHHHHcccCCC---------CchHH-----HHHHHHHHHcCChhHHHHHHHH------HHHCCC---CCC
Q 043362 91 MYVKCGSVDYGRKLFDQVPEK---------GLITW-----NAMISGYAQNGLATHVLELYRE------MKSLGV---CPD 147 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~---------~~~~~-----~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~ 147 (516)
+|.....+|.|.++...-... -..++ .+....+...|+.++|..+.-+ +.+.+- ..+
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 666666666666665433210 00111 1223334455666666554321 111111 123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 043362 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227 (516)
Q Consensus 148 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 227 (516)
..+...+..-+-+...+..|.++|..|-.. .+++++....++|.+|..+-++.++--...|-....-++..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344444444455566667777777666442 35677777888888888888877753222233333334444
Q ss_pred CCHHHHH
Q 043362 228 GHGEVAV 234 (516)
Q Consensus 228 g~~~~A~ 234 (516)
.++++|.
T Consensus 818 DrFeEAq 824 (1081)
T KOG1538|consen 818 DRFEEAQ 824 (1081)
T ss_pred hhHHHHH
Confidence 4444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.012 Score=42.99 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
++..+...+...|++++|++.+++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.015 Score=42.48 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKL----EPM---NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777888888888888888887753 222 245688999999999999999999987653
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.5 Score=43.47 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhcC-CCCC-HHHH
Q 043362 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG---QLNEALELIESML-VEPD-GAVW 320 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~p~-~~~~ 320 (516)
+-|...|..|..+|...|+++.|..-|....+- -.+++..+..+..++.... ...++.++|+++. .+|+ +.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 456778888888888888888888888888753 2335666666666655432 3457888888876 4564 5555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
..|...+...|++.+|...++.|++..|.+. .+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHH
Confidence 5566778999999999999999999887664 344443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.087 Score=41.73 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc----cchHHHhhHHHHcCC
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT----GYYVLLSNIYSEARN 366 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 366 (516)
-+++..|+++.|++.|.+.. .-| ....||.-..+++-.|+.++|..-+++++++.-+.. .+|+.-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35667888888888888765 334 578888888888888888888888888888653222 246677778888889
Q ss_pred hhHHHHHHHHHHhCCC
Q 043362 367 LDGIMRVRMMMRERRL 382 (516)
Q Consensus 367 ~~~a~~~~~~m~~~~~ 382 (516)
-+.|..=|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.099 Score=51.05 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP----EHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 246 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
+.+...++.+..+|...|++++|...|++..+ +.|+. ..|..+..+|...|++++|.+.+++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33467788888999999999999999998874 46663 348888899999999999999998875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.6 Score=38.57 Aligned_cols=194 Identities=21% Similarity=0.131 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMP-----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS- 257 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 257 (516)
.........+...+.+..+...+.... ......+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444445555555555555555554432 12333444444455555555566666655554322221 11111112
Q ss_pred HHhccCChHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCC
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGL--QPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD--GAVWGALLGACKIHKN 332 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~g~ 332 (516)
.+...|+++.+...+...... .. ......+......+...++.++|...+.... ..|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666665321 11 0122233333333555666666666666554 2222 4555556666666666
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.|...+.......|.....+..+...+...+.++++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66677776666666665334445555555555556666666655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.7 Score=40.93 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHH-HHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE-HYTCMV 292 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li 292 (516)
..|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+..++ .|+...|..+|+.-... -||.. --.-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 456677777777777888899999998888 5677778888887655 47778888888876654 23433 335566
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 293 DLLGRAGQLNEALELIESML--VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
.-+.+.++-+.|..+|+... ...+ ...|..+|.--..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77778888889999998654 2223 5678888888888888888888888888887764
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.95 Score=37.29 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
..++..+.+.+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555666667777777766665 35566667777777654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.29 Score=46.85 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
..+..|.-.|.+.+.+.+|++.-+... ..+|....---..++...|+++.|...|+++++++|+|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 355677778889999999998877765 334677776777889999999999999999999999998888888777766
Q ss_pred cCChhHH-HHHHHHHHhC
Q 043362 364 ARNLDGI-MRVRMMMRER 380 (516)
Q Consensus 364 ~g~~~~a-~~~~~~m~~~ 380 (516)
.....+. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6655544 7788888653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.99 Score=36.08 Aligned_cols=139 Identities=15% Similarity=0.186 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
-.|..++..++..+...+. +..-++-++.-....-+=+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3566677777777766532 33334444433333333344444444443322211 234444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
..+-.+. .+......-+......|.-+.-.+++..+.+.+..++....-++++|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4443332 334445556677778888888888888887655556788889999999999999999999999888874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=4.2 Score=41.89 Aligned_cols=119 Identities=9% Similarity=-0.030 Sum_probs=67.5
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCChhhHHHHH-------HHhhcCCCchHHHHHHHHHHHhCCCC
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLL-------PICVDPGYLWLGMCCHCICVKFGLDL 80 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~ 80 (516)
.|-...|..|...-.+.-.++.|...|-+...- |++.-.. +..+. ..-+--|++++|.+++-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 466677887776666666666666666554331 2211000 01110 11123478888888887665543
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-----chHHHHHHHHHHHcCChhHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-----LITWNAMISGYAQNGLATHVLELYR 137 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 137 (516)
..+.++.+.|++-...++++.-...+ ..+|+.+...++....+++|.+.|.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888776543221 1456666655555555555555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.29 Score=39.45 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchHHHHHHHHHHH
Q 043362 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFLNNALINMYA 194 (516)
Q Consensus 143 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~ 194 (516)
...|+..++.+++.+++..+++..|.++.+...+ .+++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567777777777777777777777777777765 456666666766665433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.28 Score=40.79 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCCHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN----KYGLQPGPEH 287 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 287 (516)
...++..+...|++++|+.+.+.+.... +.|...+..++.++...|+...|.++|..+.+ ..|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555556666666666666665542 33555666666666666666666666655432 2456665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.2 Score=44.44 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=99.2
Q ss_pred HHHhCCCchHHHHHHH--HhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 043362 21 GYVLNSLVSEAVSLFG--KMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV 98 (516)
Q Consensus 21 ~~~~~g~~~~A~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 98 (516)
...-+|+++++.+..+ ++. ..++ ..-.+.++.-+-+.|..+.|.++- .|+ ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFV---------TDP---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CCh---HHHhHHHHhcCCH
Confidence 3445678888776665 222 1122 334666777777888888887763 333 2345567789999
Q ss_pred HHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043362 99 DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178 (516)
Q Consensus 99 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 178 (516)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+... |..++-.|...|+.+.-.++-......|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999887776 456899999999999999999999887542 5566667777888888777777777665
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 179 FGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 179 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
-+|....++.-.|+.++..+++.+.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344445555567777776666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.7 Score=40.64 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC---c----hHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG---L----ITWNAMISGYAQ---NGLATHVLELYREMKSLGVCPDAVTFVGVLS 156 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~---~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 156 (516)
.|+-.|-...+++...++.+.++... + ..-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334666777777777777766541 1 111223344445 6777777777777555555666777766665
Q ss_pred HH
Q 043362 157 SC 158 (516)
Q Consensus 157 ~~ 158 (516)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.09 E-value=3.8 Score=44.83 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHH
Q 043362 117 NAMISGYAQNG--LATHVLELYREMKS 141 (516)
Q Consensus 117 ~~li~~~~~~g--~~~~A~~~~~~m~~ 141 (516)
-.+|.+|++.+ ..+.|+....+.+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35677888877 66777777666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.2 Score=37.65 Aligned_cols=198 Identities=17% Similarity=0.091 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHH-HH
Q 043362 150 TFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIG-GY 224 (516)
Q Consensus 150 t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~-~~ 224 (516)
.+......+...+.+..+...+...... ........+..+...+...+++..+.+.+...... +......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3334444444444444444444444331 12233334444444455555555555555544321 1122222222 56
Q ss_pred HhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGI--RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 301 (516)
...|+++.|...|.+...... ......+......+...++.+.+...+...... ... ....+..+...+...+.+
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccH
Confidence 777788888888877754211 112333444444466778888888888887753 222 356677777888888888
Q ss_pred HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 302 NEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
++|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888887765 3344 445555555555667788999888888888775
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.15 Score=46.17 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVL 356 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 356 (516)
.|+.-++.| +.|++.+|...|.... ..|+..-| |..++...|+++.|...|..+.+..|++ +..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 4566777766665543 23455555 6677777777777777777777655443 345666
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|+....+.|+.++|..+++.+.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.18 Score=45.65 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCCcccHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCC----------------chHHH
Q 043362 9 THLTVCYNALISGYVLN-----SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY----------------LWLGM 67 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------------~~~a~ 67 (516)
++|-.||-+++..|... +.++=.-..++.|.+.|+..|..+|+.||..+-+..- -+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67888888888877654 4555566677888888998999999888887654322 13455
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 68 CCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 68 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
.++++|...|+-||..+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666666666666666666666666655553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.28 Score=44.42 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=80.7
Q ss_pred HHHHHhcCC--CCCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----------
Q 043362 202 ARAIFDGMP--RKTVVSWTAIIGGYGIH-----GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG----------- 263 (516)
Q Consensus 202 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 263 (516)
.++.|...+ ++|-.+|.+++..|... +..+=....++.|.+.|+.-|..+|..||+.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 77889999999988754 556777778899999999999999999998875533
Q ss_pred -----ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 264 -----LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 264 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
.-+-++.++++|.. +|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23457899999975 59999999999999999988864
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.69 E-value=2 Score=43.58 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDG-----TAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPE 286 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 286 (516)
...+++...-.|+-+.+++++.+-.+.+ +.-.. ..|..++..+.. ....+.+.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3345555556677777777776655422 21111 123333333332 45778899999999865 46665
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH-HHh
Q 043362 287 HYTCM-VDLLGRAGQLNEALELIESMLV------EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV-LLS 358 (516)
Q Consensus 287 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~ 358 (516)
.|.-. .+.+...|++++|.+.|++... +-....+--+.-.+....++++|...|.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4667778999999999997641 112233334555577788999999999999987655444554 445
Q ss_pred hHHHHcCCh-------hHHHHHHHHHHh
Q 043362 359 NIYSEARNL-------DGIMRVRMMMRE 379 (516)
Q Consensus 359 ~~~~~~g~~-------~~a~~~~~~m~~ 379 (516)
.+|...|+. ++|.+++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 556778888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.81 Score=37.38 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=34.6
Q ss_pred HhcCCHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 296 GRAGQLNEALELIESML----VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.+.|++++|.+.|+.+. ..| ....--.|+.+|.+.+++++|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 35566666666666654 111 2344445666677777777777777777777766543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.63 E-value=3.1 Score=37.17 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 320 WGALLGACKIHKNVELAELAFGKVIKL----EPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
+-+.|-.+....|+..|+..++.-.++ +|.+..+...|+.+|- .|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 333444444455666666666664442 2445555555555553 4555554444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.088 Score=31.05 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+|..+...|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999999999998888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.87 Score=44.76 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 265 TDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLG---------RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
.+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++.. ..| |......+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 34555666666543344554 222332222211 1123445555555554 333 56666666676677777
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.|...|+++..++|+.+.+|...+..+.-+|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.7 Score=35.57 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRP---DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 297 (516)
.....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++.+.-.|+ ..|.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 33445567777777777766654 121 2234455666666777777777777776655333333 233333444333
Q ss_pred cCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 298 AGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
-...+. .|..+. .+.| .+....|...|+++++.-|++.
T Consensus 95 ~~~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 111111 1111 1224577778888888888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.87 Score=45.52 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=69.0
Q ss_pred HHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 224 YGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
..-.|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 344566666555554111 11111 23355666666667777777665433221 134455677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 303 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.|.++.++. ++...|..|.......|+++.|++.+.+.. -+..|+-.|.-.|+.+.-.++.+....+
T Consensus 336 ~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777766654 366677777777777777777777777653 2445666666677766655555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.27 E-value=7 Score=39.69 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=182.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhH-HHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTM-LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
+-..|+++|..--.....+.+..++..++.. .|-.+-| .....-=.+.|..+.+..+|+..+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3455777776554445555666666766644 4554432 22222234567778888888877653 466666666666
Q ss_pred HHHH-HcCCHHHHHHHHcccCCC------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 043362 90 TMYV-KCGSVDYGRKLFDQVPEK------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC---- 158 (516)
Q Consensus 90 ~~~~-~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---- 158 (516)
.... ..|+.+.....|+....- ....|...|.--..++++.....+|++.++. |.. .|+.....+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~-~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLH-QLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhh-HhHHHHHHHHHHH
Confidence 5443 346677777777665432 1245666666666666666666666666542 110 011000000
Q ss_pred Hh-----cCChHHHHHHHHHHHH--------------------------------------------------------c
Q 043362 159 AH-----LGAHSVGLEVEQQIQA--------------------------------------------------------N 177 (516)
Q Consensus 159 ~~-----~g~~~~a~~~~~~~~~--------------------------------------------------------~ 177 (516)
.+ ....+++.++-..... .
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 00 0111111111111000 0
Q ss_pred ----C-----------CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 178 ----G-----------FGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 178 ----g-----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
+ .+++..+|+..++.-.+.|+.+.+.-+|++..-+ =...|-..+.-.-..|+.+-|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 0 0122334444455555555555555555544322 111233333333333555555555554
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHhcC-CC
Q 043362 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEAL---ELIESML-VE 314 (516)
Q Consensus 240 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~-~~ 314 (516)
..+--++-.+.+-..-..-+-..|+++.|..+++.+.+.+ |+. ..-..-+....+.|..+.+. +++.... .+
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 4432222222222222223455789999999999998753 543 23333456667888888887 4444433 11
Q ss_pred CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 315 PDGAVWGALLG-----ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 315 p~~~~~~~ll~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
-+......+.. .+...++.+.|..++.++.+..|++...|..++......+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 22222222221 2445688999999999999999999988998888876665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.7 Score=34.56 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=18.3
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 043362 54 LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC 95 (516)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 95 (516)
+..+...+........++.+++.+ ..+....|.++..|++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 333333334444444444444443 23444555555555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=5.2 Score=39.53 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=102.2
Q ss_pred hHH--HHHHHHHHhcC-----CHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHhH
Q 043362 215 VSW--TAIIGGYGIHG-----HGEVAVQLFDEMLK-SGIRPDG-TAFVSVLSACS---------HAGLTDKGLEYFYGMK 276 (516)
Q Consensus 215 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 276 (516)
..| ..++.+..... ..+.|+.+|.+... +...|+- ..|..+...+. ......+|.++-.+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655422 35678889999882 2356653 33333322221 1234556667766666
Q ss_pred HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 277 NKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 277 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+ +.| |+.....+..++.-.|+++.|...|++.. ..|| ..+|......+...|+.++|.+.+++.+++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4 333 66777777777788888999999999987 6676 6677767777788899999999999999999976443
Q ss_pred hH--HHhhHHHHcCChhHHHHHH
Q 043362 354 YV--LLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 354 ~~--~l~~~~~~~g~~~~a~~~~ 374 (516)
-. ..+..|... ..++|.+++
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 22 223345444 355666554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.16 Score=29.85 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.66 Score=38.88 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=40.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHH
Q 043362 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201 (516)
Q Consensus 122 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 201 (516)
-+-+.|++++|..+|+-+...+. -|..-+..|..++-..+.+++|...|......+. .|+...--...+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 34455666666666655544321 1222333444444455555566555555544331 222222234445555555555
Q ss_pred HHHHHhcC
Q 043362 202 ARAIFDGM 209 (516)
Q Consensus 202 A~~~~~~m 209 (516)
|+..|...
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.00 E-value=5.1 Score=37.04 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=59.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
.....|++.+|..+|+...... +-+...-..+..++...|+.+.|..++..+..+. -.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 3445566666666666655532 1122334445555566666666666665544220 0000011111223333333332
Q ss_pred HHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCccchHHHhhHHHHcC
Q 043362 303 EALELIESMLVEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 303 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 365 (516)
+..++-.+.-..| |...--.+...+...|+.+.|...+-.+++.+ -.+...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222222234 34444444455555555555555444444322 223334444444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.87 E-value=4.5 Score=40.20 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=66.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCC--HHHHHHHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPD--GAVWGALLGACK 328 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~ 328 (516)
..+...+-+.|+.++|.+.+.++.+.+...-+..+...|+..|...+.+.++..++.+-. .-|. ...|+..+--++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345666678899999999999998754332345567788999999999999999988764 1233 456666553333
Q ss_pred hcCC---------------HHHHHHHHHHHhhcCCCCc
Q 043362 329 IHKN---------------VELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 329 ~~g~---------------~~~A~~~~~~~~~~~p~~~ 351 (516)
.-++ -..|.+...++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3332 1235577888888776544
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.79 E-value=2.1 Score=41.70 Aligned_cols=127 Identities=8% Similarity=-0.008 Sum_probs=74.2
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHHcCCHHHHHHHHcccC--CCCchH-HHHHHHHH
Q 043362 48 VTMLCLLPICVDPGYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLIT-WNAMISGY 123 (516)
Q Consensus 48 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~-~~~li~~~ 123 (516)
..|...+.+..+..-++.|+.+|..+.+.| +.+++.++++++..|+ .|+...|.++|+.-. -+|... -+-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445566666666666677777777776666 5666667777776654 566666666665432 233322 23344445
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
..-++-..|..+|+.-... +..+ ...|..++.--..-|++..+..+-+.+..
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5566666676677644332 2222 34566666666666777666666655555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.81 Score=43.08 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=114.4
Q ss_pred HHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc---hHHHHHHHHHHHh
Q 043362 123 YAQNGLATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSN---PFLNNALINMYAR 195 (516)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~ 195 (516)
+.++.+.++|+..+.+-... +..---.++..+..+.+..|.++++...--..+.. ..... ...|..|..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888887776543 11111235566666777777766654432111110 01111 1223333444444
Q ss_pred CCCHHHHHHHHhc---CC---C-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHhcc
Q 043362 196 CGNLKKARAIFDG---MP---R-K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-P----DGTAFVSVLSACSHA 262 (516)
Q Consensus 196 ~g~~~~A~~~~~~---m~---~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~~~ll~a~~~~ 262 (516)
.-++.+++.+-.. .+ . . .-....+|..++...+.++++++.|+...+--.. . ....+..|-+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3344444333221 11 1 0 1123344566666777788888888776542111 1 124577777777888
Q ss_pred CChHHHHHHHHHhHH---hcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHhcC----CCCCH----HHHHHHHHH
Q 043362 263 GLTDKGLEYFYGMKN---KYGLQPGPEHYTC-----MVDLLGRAGQLNEALELIESML----VEPDG----AVWGALLGA 326 (516)
Q Consensus 263 g~~~~a~~~~~~~~~---~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~----~~p~~----~~~~~ll~~ 326 (516)
.++++|.-+..+..+ .+++.--..-|.+ |.-+|...|.+-+|.+.-++.. ...|. .....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887766655432 2233222222332 2334555666666666555433 12232 333455566
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 043362 327 CKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~ 346 (516)
|+..|+.+.|..-++.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77788888777777766543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.68 E-value=7.7 Score=38.07 Aligned_cols=351 Identities=12% Similarity=0.056 Sum_probs=185.1
Q ss_pred cHHHHHHHH--HhCCCchHHHHHHHHhHHC--CCCC------------ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC
Q 043362 14 CYNALISGY--VLNSLVSEAVSLFGKMREQ--GVEI------------NSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77 (516)
Q Consensus 14 ~~n~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 77 (516)
.|-.|..++ -+.+.+.+|++.|..-..+ +..| |-.-=+.....+...|++.+|+.+++.+...=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444433 3467888888888776554 2222 11112234456678999999999998887664
Q ss_pred CC----CChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHHHHcCC------------------------
Q 043362 78 LD----LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNGL------------------------ 128 (516)
Q Consensus 78 ~~----~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~------------------------ 128 (516)
++ -+..+||.++-++++.=-++.-. .+ ..|+ .-|.-||..|.+.=.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e----~~-s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKE----SM-SSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHH----hc-ccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 44 78889999888887643222111 11 1121 234444444433211
Q ss_pred -------hhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHhC
Q 043362 129 -------ATHVLELYREMKSLGVCPDAVT-FVGVLSSCAHLGAHSVGLEVEQQIQANGFG----SNPFLNNALINMYARC 196 (516)
Q Consensus 129 -------~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~ 196 (516)
..--++++......-+.|+... ...+...+.+ +.+++..+-+.+....+. .=+.++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222234454322 2223333332 445554444444332211 1134566677777777
Q ss_pred CCHHHHHHHHhcCC--CCCHh-------HHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH---HH
Q 043362 197 GNLKKARAIFDGMP--RKTVV-------SWTAIIGGYG----IHGHGEVAVQLFDEMLKSGIRPDGTAF-VSVLS---AC 259 (516)
Q Consensus 197 g~~~~A~~~~~~m~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~---a~ 259 (516)
++...|.+.+.-+. +|+.. +-..+-+..+ ..-+...-+.+|+......+ |..-+ ..|+. -+
T Consensus 312 ~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 312 VQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHL 389 (549)
T ss_pred HhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHH
Confidence 88887777665443 23221 1111222222 11223344555555554432 22211 11222 23
Q ss_pred hccCC-hHHHHHHHHHhHHhcCCCC-CHHHHHHHH----HHHHhc---CCHH---HHHHHHHhcCCCC----CHHHHHHH
Q 043362 260 SHAGL-TDKGLEYFYGMKNKYGLQP-GPEHYTCMV----DLLGRA---GQLN---EALELIESMLVEP----DGAVWGAL 323 (516)
Q Consensus 260 ~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~m~~~p----~~~~~~~l 323 (516)
-+.|. -++|.++++.+.+ +.| |...-|.+. ..|..+ ..+. +-.+++++....| +...-|.|
T Consensus 390 W~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 33444 7788888888874 344 332222221 122211 1111 2223333333222 44566667
Q ss_pred HHH--HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 324 LGA--CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 324 l~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
..| ...+|++.++.-.-.-+.++.| ++.+|..++-......++++|..++..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 666 5678999999998888899999 8889999999999999999999999876
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=8.6 Score=38.32 Aligned_cols=156 Identities=10% Similarity=0.136 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 194 (516)
..-+++..+.++-...-+..+..+|..-| -+...|..++.+|... ..++-..+|+++.+..+. |++...-|.+.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 45567788888888888888888888864 5777888888888877 567778888888887654 5556666777777
Q ss_pred hCCCHHHHHHHHhcCCCC------CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCC
Q 043362 195 RCGNLKKARAIFDGMPRK------TV---VSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGL 264 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 264 (516)
+ ++.+.+..+|.++..+ +. ..|..++..- ..+.+..+.+..+... .|..--.+.+--+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6 8888888877765321 11 1344443311 2344455555555443 2222333444444455666667
Q ss_pred hHHHHHHHHHhHH
Q 043362 265 TDKGLEYFYGMKN 277 (516)
Q Consensus 265 ~~~a~~~~~~~~~ 277 (516)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.3 Score=39.79 Aligned_cols=153 Identities=10% Similarity=0.008 Sum_probs=89.5
Q ss_pred hCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHH--HHHHHHhccCChHH
Q 043362 195 RCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFV--SVLSACSHAGLTDK 267 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~--~ll~a~~~~g~~~~ 267 (516)
-.|+..+|-..++++.+ .|..+|+--=.++..+|+.+.-...+++.... ..||.. +|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666676666666653 37777777777888888888777777777653 234432 222 22334456788888
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 268 GLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESMLVEPD------GAVWGALLGACKIHKNVELAELAF 340 (516)
Q Consensus 268 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~ 340 (516)
|++.-++..+ +.| |.-.-.++...+.-.|+..++.++..+-...-+ ...|--..-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8887776663 333 444445666667777888888888776541100 001111112234457788888887
Q ss_pred HHH--hhcCCCCc
Q 043362 341 GKV--IKLEPMNT 351 (516)
Q Consensus 341 ~~~--~~~~p~~~ 351 (516)
+.- .++..+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 543 23444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.19 E-value=8.7 Score=37.21 Aligned_cols=150 Identities=9% Similarity=0.027 Sum_probs=81.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--H
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP---DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--P 285 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 285 (516)
.....+|..++..+.+.|+++.|...+.++...+..+ ++.....-+...-..|+..+|...++..... .+..+ .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3455678888889999999999999888887743211 2233344455556678888888888877752 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 286 EHYTCMVDLLGRAGQLNEALEL-IESMLVEPDGAVWGALLGACKIH------KNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
.....+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.+..|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111000 00000000 00000000112222233333333 7888899999999999988777777766
Q ss_pred hHHHH
Q 043362 359 NIYSE 363 (516)
Q Consensus 359 ~~~~~ 363 (516)
..+.+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 66543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.55 Score=40.39 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 293 DLLGRAGQLNEALELIESML-VEPD------GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
.-+.+.|++++|..-|.... .-|. .+.|..-..++.+.+.++.|+.-..+.++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556777887777766554 1121 3344444566788899999999999999999988778888889999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 043362 366 NLDGIMRVRMMMRERR 381 (516)
Q Consensus 366 ~~~~a~~~~~~m~~~~ 381 (516)
.+++|+.=++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887643
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=14 Score=39.19 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043362 83 SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162 (516)
Q Consensus 83 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 162 (516)
..-..-+..+++.+++.....++..- ..+...-.....+....|+.++|.+....+=..|. ........++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 34445555666778888777743332 23444455566677778887777766666654442 23344555555555444
Q ss_pred C
Q 043362 163 A 163 (516)
Q Consensus 163 ~ 163 (516)
.
T Consensus 178 ~ 178 (644)
T PRK11619 178 K 178 (644)
T ss_pred C
Confidence 3
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.02 E-value=5 Score=38.05 Aligned_cols=193 Identities=13% Similarity=0.072 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-------HcccCCCC--chHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCC---HHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKL-------FDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMKSL-GVCPD---AVT 150 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~-------f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~t 150 (516)
++..+..+.++.|.+++++.. +....+.+ ..+|-.+..++-+.-++.+++.+-..-... |..|. ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 445555566666666555432 11111111 245666666666666666666654443321 22221 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhCCCHHHHHHHHhcC-------CCCCHh---
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANG-----FGSNPFLNNALINMYARCGNLKKARAIFDGM-------PRKTVV--- 215 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-------~~~~~~--- 215 (516)
..++..+....+.++++.+.|+...+.. .-....++.+|...|.+..++++|.-+..+. .-.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345666777777888888887776621 1123467788888888888888775544332 222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 216 ---SWTAIIGGYGIHGHGEVAVQLFDEMLK----SGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 216 ---~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+.-.|.-++...|....|.+.-++..+ .|-+|. ......+...|...|+.|.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233355567777777777776666433 343332 2334456667778888888777776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.99 E-value=6.5 Score=35.24 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC--chHHHHHHHHHHHcC
Q 043362 50 MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNG 127 (516)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g 127 (516)
|.-...++....++++|+..+....+. .+.+...|.+ ...++.|..+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334445566667777777766555432 1222222221 223444555555554433 234555666677777
Q ss_pred ChhHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 128 LATHVLELYREMKS--LGVCPDAV--TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 128 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
.++-|-..+.+.-+ .++.|+.. .|.--+......++...|.++ +..+-..|.+...+++|-
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHH
Confidence 76666555544322 22444321 222222222222222222222 223333444555555554
Q ss_pred HHHhcCCCC--------CH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCChHHHHHH
Q 043362 204 AIFDGMPRK--------TV-VSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRPDGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 204 ~~~~~m~~~--------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
..|.+-... +. ..+-+.|-.|.-..++..|...+++--+.+ -.-+..+...||.+|- .|+.++...+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 444332210 11 123344445555566677777776633321 1223456666666654 4566666555
Q ss_pred HH
Q 043362 272 FY 273 (516)
Q Consensus 272 ~~ 273 (516)
+.
T Consensus 250 l~ 251 (308)
T KOG1585|consen 250 LS 251 (308)
T ss_pred Hc
Confidence 43
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.1 Score=42.42 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=101.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
+..+...-+++-++..+ +.||-.+...++ +--......++.+++++..+. ....+..-- .....|..-
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-----gE~~lg~s~-~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-----GEASLGKSQ-FLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-----HHHhhchhh-hhhcccchh---
Confidence 34445555555555555 456544332222 333455678888888877653 111111000 000111111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
+.+..-..+|-..+-..|...+.+.|+.++|++.++++++..|. +......|++++...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11110001122333455667777888888999888888876654 4456778888888888999888888887666666
Q ss_pred CCCceeEEE--EC--CEEEEEEeCCCC-CcchHHHHHHHHHHHHHHHhCCCCCC
Q 043362 384 KDPGYSYVE--LK--GRVHLFMVGDRN-HHQTVEIYRMLDKLENLVQEHDGTKR 432 (516)
Q Consensus 384 ~~~~~s~i~--~~--~~~~~f~~~~~~-~~~~~~~~~~l~~l~~~m~~~g~~p~ 432 (516)
+....+|.. ++ ..-..|.....+ .+........++-+.+.++..+.+|.
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 665555421 00 000011111001 11111222334567777777888887
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.1 Score=35.63 Aligned_cols=89 Identities=19% Similarity=0.125 Sum_probs=46.5
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-CH---HHHHHHHHHHHhcCC
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEP-DG---AVWGALLGACKIHKN 332 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~~---~~~~~ll~~~~~~g~ 332 (516)
.+..|+++.|++.|.+...- .+-....||.-..++.-+|+.++|++=+++.. ..| .. ..|..-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 44555555555555555421 22245555555555555666665555555443 111 11 112222234667777
Q ss_pred HHHHHHHHHHHhhcCCC
Q 043362 333 VELAELAFGKVIKLEPM 349 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~ 349 (516)
.+.|..-|+.+-+++..
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777777766643
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.44 E-value=9.5 Score=35.72 Aligned_cols=17 Identities=18% Similarity=-0.093 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHHHH
Q 043362 327 CKIHKNVELAELAFGKV 343 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~ 343 (516)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566777777776643
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=8.2 Score=34.97 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCc---cchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNT---GYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+..-|.+.|.+..|..-++++++.-|+.+ ..+..+..+|.+.|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34668899999999999999998765543 3466778889999999999998776643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.3 Score=41.35 Aligned_cols=159 Identities=14% Similarity=0.008 Sum_probs=117.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHhcCCH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM----VDLLGRAGQL 301 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 301 (516)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...||...|..+ .-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 566777888888899999999999999998875 345666544443 3345579999
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ccchHHHhhHHHHcCChhHHHHHHH
Q 043362 302 NEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN----TGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
++|++.-++.. +.| |...-.++.......|+..++.++..+-...-... ...|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999998876 333 66777778888888999999999877765433221 1234456666777899999999999
Q ss_pred HHHhCCCCCCCc
Q 043362 376 MMRERRLKKDPG 387 (516)
Q Consensus 376 ~m~~~~~~~~~~ 387 (516)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776555555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=9.7 Score=35.64 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=7.7
Q ss_pred CChhHHHHHHHHHHHcCC
Q 043362 80 LDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 80 ~~~~~~~~ll~~~~~~g~ 97 (516)
+|..+....+..+...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 344444444444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.14 E-value=5.5 Score=36.15 Aligned_cols=239 Identities=16% Similarity=0.182 Sum_probs=139.3
Q ss_pred cCCHHHHHHHHcccCCC----C---chHHHHHHHHHHHcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 043362 95 CGSVDYGRKLFDQVPEK----G---LITWNAMISGYAQNGLATHVLELYREMKSL---GV--CPDAVTFVGVLSSCAHLG 162 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~g 162 (516)
..++++|..-|++..+. + ..+...+|..+.+.|++++.++.|.+|..- .+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34567777777665432 2 235556788888888888888888887531 11 124456777777777666
Q ss_pred ChHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---------------CHhHHHHHHH
Q 043362 163 AHSVGLEVEQQIQAN-----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---------------TVVSWTAIIG 222 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------~~~~~~~li~ 222 (516)
+.+.-...++..++. +-..--.+-..|...|...|.+.+..+++.++... =...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666665544331 11112233456777788888888888877766311 1246777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh-----ccCChHHHHHHHHHhHHhcCCCCCH-----HHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACS-----HAGLTDKGLEYFYGMKNKYGLQPGP-----EHYTCM 291 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 291 (516)
.|....+-.+-..+|++...- ..-|.+. ...++.-|. +.|.+++|..-|-++-+.|.-.-++ .-|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888877777777788876542 2234433 334555553 4678888876555554444322222 224555
Q ss_pred HHHHHhcCC----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 292 VDLLGRAGQ----LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 292 i~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
..++.+.|- -++|. -....|.....+.|+.+|..+ +..+-+++
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 666666552 11111 001346677888899888654 34433333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.12 E-value=15 Score=37.33 Aligned_cols=158 Identities=9% Similarity=-0.060 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCCCh------hhHHHHHHHhhc----CCCchHHHHHHHHHHHhCCCCChhHH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINS------VTMLCLLPICVD----PGYLWLGMCCHCICVKFGLDLDFSVG 85 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 85 (516)
..+++...-.|+-+.+++++.+..+.+---.. -+|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555556667777777776665443211111 122223322222 34556667777766665 3444333
Q ss_pred H-HHHHHHHHcCCHHHHHHHHcccCCCC-------chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043362 86 N-CLMTMYVKCGSVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157 (516)
Q Consensus 86 ~-~ll~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 157 (516)
. --...+...|++++|.+.|++..... ...+--+.-.+.-.+++++|.+.|..+.+.. .-+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 2 22344556677777777777543211 1233344455666677777777777776642 2233344444333
Q ss_pred H-HhcCCh-------HHHHHHHHHHHH
Q 043362 158 C-AHLGAH-------SVGLEVEQQIQA 176 (516)
Q Consensus 158 ~-~~~g~~-------~~a~~~~~~~~~ 176 (516)
| ...++. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 344555 566666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.98 E-value=10 Score=35.11 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH-hHH---HHHHHHHHhcCCHHH
Q 043362 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV-VSW---TAIIGGYGIHGHGEV 232 (516)
Q Consensus 157 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~---~~li~~~~~~g~~~~ 232 (516)
.....|++.++..+++...... +-+...--.|..+|...|+.+.|..++..++.... ..| .+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788888888888888764 23455667788899999999999999999874311 111 112223333333333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 233 AVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 233 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333222 23 344444555556666666666665544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.97 E-value=3.6 Score=34.73 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=53.5
Q ss_pred HHcCCHHHHHHHHcccCCCCchHHHHH-----HHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHhcCCh
Q 043362 93 VKCGSVDYGRKLFDQVPEKGLITWNAM-----ISGYAQNGLATHVLELYREMKSLGVCPDAV-TFVGVLS--SCAHLGAH 164 (516)
Q Consensus 93 ~~~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~--~~~~~g~~ 164 (516)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|+..|.+.-...-.|-.. -..-|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344556666666666655443333322 233445566666666666654432222221 1111111 12344445
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+......+.+...+-+.....-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5444444444433333333444445555555555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.85 E-value=5.7 Score=31.92 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
.+..+..+...|+-++-.+++.++.+. -+|++..+..+..||.+.|+..++.+++.++-++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 445567778888888888888887653 4677788888888999999999988888888765 53
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.84 E-value=14 Score=36.37 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=136.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-chHHHHHHHH--HHHcCCh
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLD------FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-LITWNAMISG--YAQNGLA 129 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g~~ 129 (516)
+.+++.++..+|.++.+.. ..+ ....+-++++|.- .+++.....+....+.. -..|-.+..+ +-+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 4456666666666655442 111 1233455666653 33444444443333221 2234343333 3456777
Q ss_pred hHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCchHHHHHHHH
Q 043362 130 THVLELYREMKSL--GVCP------------DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG----FGSNPFLNNALIN 191 (516)
Q Consensus 130 ~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~ 191 (516)
.+|++.+..-.+. +-.| |-..=+..+.++...|.+.+|+.+++++...= ...+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 7777777665543 2221 11222345566778899999999888887643 4478889998888
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCChHHHH
Q 043362 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH--AGLTDKGL 269 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~ 269 (516)
+++++=-++- -+.+...=..-|--||..|.+.=+.-++.. | ..+-|-...+..++.-..- .....--.
T Consensus 176 mlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 176 MLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred HHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 8876433221 122222112234445555543221111100 0 0122332222223222111 11111122
Q ss_pred HHHHHhHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 270 EYFYGMKNKYGLQPGPE-HYTCMVDLLGRAGQLNEALELIESML-------VEPDGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
+++..-. ++-+.|+-. +...|++.+.. +.+++..+-+.+. .+.-..++..++....+.++...|.+.+.
T Consensus 246 q~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 246 QILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2222222 224455432 33344444433 3344443333322 11235677788888888888888888888
Q ss_pred HHhhcCCCCc
Q 043362 342 KVIKLEPMNT 351 (516)
Q Consensus 342 ~~~~~~p~~~ 351 (516)
-+..++|...
T Consensus 323 lL~~ldp~~s 332 (549)
T PF07079_consen 323 LLKILDPRIS 332 (549)
T ss_pred HHHhcCCcch
Confidence 8887777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=16 Score=38.79 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCchHHH----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN----AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 161 (516)
..-+++..+...++-|..+-+.-.. |..+-. .-..-+.+.|++++|...|-+-... +.|. .++.-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3455666666667777766554322 222222 2233345678888888877665432 3332 234445555
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV--SWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
....+-..+++.+.+.|+. +...-..|+.+|.|.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5566666677778888765 455567789999999998888888777662 221 134455666666666677666554
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 240 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
... +......+ +-..+++++|.+++..+.
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 332 22333333 345678888888876653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.42 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
++..+...|.+.|++++|.+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555666666666555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.50 E-value=4 Score=37.21 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIR--PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVD 293 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 293 (516)
|+.-+..| +.|++.+|...|....+.... -....+.-|..++...|+++.|..+|..+.+.++-.|. +..+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55544433 345566666666666553211 01123334555556666666666666665555443332 244444555
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 043362 294 LLGRAGQLNEALELIESML 312 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~ 312 (516)
...+.|+.++|...+++..
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 5555555555555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.43 E-value=5.9 Score=34.14 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
.+..+.+.|.+.|+.+.|.+.|.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34455555555555555555555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.42 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+|..+...|...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888887774
|
... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.20 E-value=10 Score=35.01 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhc-CCHHHHHHHHHhcC---C-------CCC-----HHHHHH----HHHHHHhcCCHHHHHHHHHH
Q 043362 283 PGPEHYTCMVDLLGRA-GQLNEALELIESML---V-------EPD-----GAVWGA----LLGACKIHKNVELAELAFGK 342 (516)
Q Consensus 283 p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~---~-------~p~-----~~~~~~----ll~~~~~~g~~~~A~~~~~~ 342 (516)
-|..-|...+....+. -.++++.+++.... + .-| ..+|.. ....|...|.+.+|.++.++
T Consensus 225 ~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 225 YDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred ccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3555555555544332 34666666665543 0 011 123333 33678999999999999999
Q ss_pred HhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+.++|-+...+..|...++..|+--.|.+-++.+.+
T Consensus 305 ~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 305 ALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999999999999999998888887777753
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.03 E-value=23 Score=37.39 Aligned_cols=68 Identities=15% Similarity=-0.080 Sum_probs=42.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCc-------hHHHHHHHHHHHhCCCCChh
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL-------WLGMCCHCICVKFGLDLDFS 83 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 83 (516)
.| ++|-.+.+.|++++|.++..+.... .......|...+..+....+- +....-++..++.....|++
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 44 6888999999999999999666543 456667788889988765332 23444455544443322554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.6 Score=40.31 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
..++..+..+|+.+.+.+.++++...+. ..|..++.+|.+.|+...|+..|+++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444455555555555555555444332 355555555555555555555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.88 E-value=9.2 Score=36.08 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCCH-HH-HHHHHHHHhccCC--hHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDG-TA-FVSVLSACSHAGL--TDKGLEYFYGMKNKYGLQPGPEHYTCMV 292 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~-~t-~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 292 (516)
+.+..+|+.+.+.|...+. .- ...++..+..... ...+.++++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4566677777776665432 22 3333332222222 34667777777765 7777777766554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.87 E-value=30 Score=38.39 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=51.8
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
++.--+.|-+.+|..++.-=.+.-...|.+...-+.+.+.+++|.-.|+..-+ .--.+.+|...|++.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334445555555444433222233444444444455555555555543221 112345556666666666
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 66555432 111111122445555556666666655555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.1 Score=41.29 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445556666667777777777777777777767777777777777777777777776654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.75 E-value=13 Score=33.82 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRK------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFV 253 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 253 (516)
|-...|+.-+. -.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....- -.|| .-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33445554443 45679999999999998743 22344455667788999999999999977642 3333 3333
Q ss_pred HHHHHHh---cc----CCh---HHHHHHHHHhHHhcCC---CCCHHHH------------HHHHHHHHhcCCHHHHHHHH
Q 043362 254 SVLSACS---HA----GLT---DKGLEYFYGMKNKYGL---QPGPEHY------------TCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 254 ~ll~a~~---~~----g~~---~~a~~~~~~~~~~~~~---~p~~~~~------------~~li~~~~~~g~~~~A~~~~ 308 (516)
.-|.+.+ .. .+. ..|..-|+.++.++.- .||...- ..+.+-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3343333 22 233 3455556666655422 2232211 23446678889998888888
Q ss_pred HhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 309 ESMLVE-PD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 309 ~~m~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++|... |+ ....-.+..+|...|-.++|...-+-+....|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 877621 22 34445566889999999999887766655556654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.66 E-value=12 Score=39.72 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 043362 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN--PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227 (516)
Q Consensus 150 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 227 (516)
+...-+....+...++.|..+-+ ..+.+++ ........+-+.+.|++++|...|-+...- .--.-+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHHHHHHhcCH
Confidence 34556666667666666665533 2333333 223344455556778888888777654321 1112356666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ-PGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
.+..+-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+... + |.. -| ....+..+.+.+-+++|.-
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHHHH
Confidence 67777777888888877653 3334568888888888888776665443 1 211 12 2345666677777888877
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 307 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
+-.+.. ........++ -..+++++|.+.++.+
T Consensus 485 LA~k~~--~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFK--KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhc--cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 776654 2333334333 3567788888876654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.13 E-value=5.8 Score=40.23 Aligned_cols=150 Identities=17% Similarity=0.083 Sum_probs=105.5
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
-.|+++.|..++..+++ ...+.++.-+.+.|..++|+++ .+|...-- ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHHh
Confidence 35788888887777763 2344555666677777777654 33332211 223567899999887765
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccch
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 354 (516)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+.....+.+.+|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 53 67789999999999999999999998764 256677777888888777777777766666553
Q ss_pred HHHhhHHHHcCChhHHHHHHHHH
Q 043362 355 VLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 355 ~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
.-.+|...|+++++.+++.+-
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHhc
Confidence 334677889999999887543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.65 Score=27.81 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 320 WGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 320 ~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
|..|...|...|++++|+.++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.79 Score=27.44 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREM 139 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m 139 (516)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666777777777666663
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.40 E-value=6.6 Score=37.03 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHH--cC----CHHHHHHHHcccCCCC-------chHHHHHHHHHHHcCC-
Q 043362 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK--CG----SVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGL- 128 (516)
Q Consensus 63 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~- 128 (516)
++....+++.+.+.|+..+.+++-+..-.... .. ....|..+|+.|++.- -.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677889999999999888776664444433 22 3567888999987532 2456666544 3333
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043362 129 ---ATHVLELYREMKSLGVCPDAV--TFVGVLSSCAHLGA--HSVGLEVEQQIQANGFGSNPFLNNALIN 191 (516)
Q Consensus 129 ---~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 191 (516)
.+.+...|+.+...|+..+.. ..+.++..+..... ...+..+++.+.+.|++.....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 355677788888877766433 34444444333222 4467788888888888877777765543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.72 Score=27.24 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 043362 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR 102 (516)
Q Consensus 71 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 102 (516)
++.++.. |.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4445554 667778888888888888888775
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=22 Score=33.23 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=137.0
Q ss_pred HHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCC
Q 043362 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH----SVGLEVEQQIQANGF 179 (516)
Q Consensus 104 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----~~a~~~~~~~~~~g~ 179 (516)
+++.+..+|....-..+.++...|. .++...+..+... +|...-...+.++++.|+. .++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 3444456666666666777777664 4455555555443 4555555667777777763 4556666655333
Q ss_pred CCchHHHHHHHHHHHhCCCH-----HHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043362 180 GSNPFLNNALINMYARCGNL-----KKARAIFDG-MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 253 (516)
.++..+-...+.+++..+.- ..+.+.+.. +..++...-...+.++.+.++ .+|+..+-.+.+ .+|...-.
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~ 177 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRN 177 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHH
Confidence 45666666666666665431 223333322 334566666667777777776 466777766665 34555555
Q ss_pred HHHHHHhccC-ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043362 254 SVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332 (516)
Q Consensus 254 ~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 332 (516)
..+.++.+.+ ..+.+...+..+.. .++..+-..-+.++++.|.. +|...+-+....++ .....+.+....|+
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 5566666543 23456666666653 45777777788888888884 45555444433344 33456777888888
Q ss_pred HHHHHHHHHHHhhcCCC
Q 043362 333 VELAELAFGKVIKLEPM 349 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~ 349 (516)
. +|...+.++.+..|+
T Consensus 251 ~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 251 K-TLLPVLDTLLYKFDD 266 (280)
T ss_pred H-hHHHHHHHHHhhCCC
Confidence 5 688888888776663
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.25 E-value=18 Score=32.27 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=16.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+..+++.+|+.+|+++....-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456777888888888766554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.24 E-value=2 Score=35.85 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHhcC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 297 RAGQLNEALELIESML-VEPDGAVWGAL-LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+.++.+++..++..+. .+|.......+ ...+...|++.+|.++++.+.+..|..+..-..++.++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4556666666666554 34443222222 12245566666666666666555554443333333333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.20 E-value=26 Score=33.87 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEP----MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+......|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999987652 13456666788889999999999998888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.75 E-value=8.3 Score=33.25 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcCChhHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNGLATHVLELYREM 139 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m 139 (516)
.+..+.+.|.+.|+.+.|.+.|.++.+..+ ..+-.+|....-.+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555544321 23444444444455555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.4 Score=34.80 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 555666666666666666665555555556666666666666666665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.58 E-value=5 Score=30.19 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456777777777788899999999999999999999999999998875433 24556766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.46 E-value=75 Score=38.38 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
..+|-......+..|.++.|....-.+.+..++ ..+...+......|+...|..+++...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 678888999999999999999988887777643 5788899999999999999999999886654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=1 Score=42.03 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=77.0
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-V-EPDGAVWGALLGACKIHKNV 333 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~~ 333 (516)
+-|.+.|.+++|+..|.... .+.| ++.++..-..+|.+..++..|+.=.+... . +.-...|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998877 4466 88888888889999998887776555443 1 11234555555555667889
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.+|.+-++.+++++|++. .|-..|++.....++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 999999999999999864 3444444444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.12 E-value=4.8 Score=30.64 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+. ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 356666777777788999999999999999999999999999999876443 33377766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.7 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.76 E-value=21 Score=30.32 Aligned_cols=133 Identities=11% Similarity=0.157 Sum_probs=77.8
Q ss_pred HHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHc-CCHHHHHHHHcccC
Q 043362 32 VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKC-GSVDYGRKLFDQVP 109 (516)
Q Consensus 32 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~-g~~~~A~~~f~~~~ 109 (516)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.++ +..++-+|.. +...|++.-.+. .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566677778888888888888888888876654443 4444444443 333333332111 01344555555553
Q ss_pred CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
..+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+++...+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887765321 222234456666666665555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.70 E-value=2 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.53 E-value=46 Score=34.08 Aligned_cols=179 Identities=11% Similarity=0.031 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 157 (516)
+..+|+.-++.-.+.|+.+.+.-+|++..-+- ...|--.+.-.-..|+.+-|-.++..-.+.-++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34577777887888888888888888765443 244555555555557777777766655544332222222222223
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH---HHHhcCCC--CCHhHHHHHHHHH-----Hhc
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR---AIFDGMPR--KTVVSWTAIIGGY-----GIH 227 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~m~~--~~~~~~~~li~~~-----~~~ 227 (516)
+-..|++..|..+++.+...- +.-+.+-..-+.+-.+.|+.+.+. +++....+ .+....+.+..-+ .-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445678888888888887754 223333344455566677777766 33333321 1222222222222 224
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 261 (516)
++.+.|..++.++.+. .+++...|..++.-+..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 5566666666666654 34455555555554433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.08 E-value=3.3 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 322 ALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.+.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 355678899999999999999999999986
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.02 E-value=56 Score=34.64 Aligned_cols=89 Identities=15% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRP-----DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
++.+++|.+.....+-| ........+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHH
Confidence 45666666654433222 223345566677777777777777766631 3334433344557777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC
Q 043362 306 ELIESMLVEPDGAVWGALLGACKIHK 331 (516)
Q Consensus 306 ~~~~~m~~~p~~~~~~~ll~~~~~~g 331 (516)
++.++ +-|...|..||.-+...-
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCc
Confidence 77765 358888888887766543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.91 E-value=2.7 Score=39.42 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 299 (516)
..-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|..=......- -...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4569999999999999998776 456 8999999999999999988777655554421 123456666654
Q ss_pred -------CHHHHHHHHHhcC-CCCC
Q 043362 300 -------QLNEALELIESML-VEPD 316 (516)
Q Consensus 300 -------~~~~A~~~~~~m~-~~p~ 316 (516)
+..+|.+=.+... .+|+
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 4555554444433 4565
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.66 E-value=23 Score=29.76 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=10.8
Q ss_pred HHHHcCCHHHHHHHHcccCCC
Q 043362 91 MYVKCGSVDYGRKLFDQVPEK 111 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~ 111 (516)
.+.+.|++++|..+|+.+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.43 E-value=30 Score=31.00 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHhHHhcCCCC-CHHHHHHHH---HHHHhcCCHHHHHHHHHhcC---CCCCHHHHHH---HHH--HHHh-
Q 043362 263 GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMV---DLLGRAGQLNEALELIESML---VEPDGAVWGA---LLG--ACKI- 329 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li---~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~---ll~--~~~~- 329 (516)
.++++|+..|+..-+-|.-.- +...--|++ +.-+..|++.+|.++|++.. ...+..-|.. ++. .|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 445555555555543222111 122222332 33346788899999988765 2222222322 221 1322
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccc
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
..|.-.+...+++-.+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 367777888889989999864433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.32 E-value=0.7 Score=38.23 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=53.5
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHH
Q 043362 53 LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132 (516)
Q Consensus 53 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 132 (516)
++..+.+.+........++.+.+.+...+....+.|+..|++.++.++..++++....-| ...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd---~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD---LDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS----CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC---HHHHHHHHHhcchHHHH
Confidence 455666667777777777777776655667788888888888877777777777443322 23455555555666666
Q ss_pred HHHHHHH
Q 043362 133 LELYREM 139 (516)
Q Consensus 133 ~~~~~~m 139 (516)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.96 E-value=30 Score=30.63 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..+|-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|+++.|.+=+...-+.-.-.|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 4555555555666666666666666665422111 22111111233346666665544444332112222222322221
Q ss_pred HHhcCCHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------ccchHHHhhHHHHcCC
Q 043362 295 LGRAGQLNEALE-LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-------TGYYVLLSNIYSEARN 366 (516)
Q Consensus 295 ~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 366 (516)
+.-+..+|.. +.++.. ..|..-|...|..+-- |++. .+.+++++.+...++ ..+|.-|+.-|...|.
T Consensus 178 --~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2223444443 233332 3344555554444321 1111 122333333322222 3578888888999999
Q ss_pred hhHHHHHHHHHHhCC
Q 043362 367 LDGIMRVRMMMRERR 381 (516)
Q Consensus 367 ~~~a~~~~~~m~~~~ 381 (516)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.81 E-value=11 Score=32.86 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL--QPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A 304 (516)
+|.+.|-++...+.--++.....|...|. ..+.+++.+++.+..+-+.- .+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44455544444443333333333333333 34555555555544432211 23455555555555555555544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=79 Score=35.32 Aligned_cols=254 Identities=7% Similarity=-0.046 Sum_probs=114.4
Q ss_pred HHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 043362 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182 (516)
Q Consensus 103 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 182 (516)
.+...+..++...--..+..+.+.+. .++...+.+.... +|...-...+.++...+........+..+++. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444455555555555555555554 3344444444432 33333333334443332111111222223322 35
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
..+-.+.++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543211 12234444556666555556666665544322 11121 234444545555555555
Q ss_pred CChHH-HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 263 GLTDK-GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 263 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
+..+. +...+..+.. .++...-...+.++...|..+.+...+..+...++..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333334332 345666666777777777655443334333334555555555666665554 33444444
Q ss_pred HHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 342 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+++ +| +...-...+.++.+...-..+...+....
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4442 22 22344444555554322334444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.69 E-value=12 Score=32.77 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN---GFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
-+.|.+.|-++...+.--++.....+. .|....+.+++.+++-+..+. +-.+|+.++.+|++.|-+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356777777776665444444433333 344466777787777777662 23566777777888888777777663
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.55 E-value=39 Score=31.60 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 216 SWTAIIGGYGIHGHG---EVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 216 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
+...++.+|...+.. ++|..+++.+... -|+ ...+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444555555555543 3455555555443 222 334444555555567777777777777753
|
It is also involved in sporulation []. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.40 E-value=18 Score=27.56 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
.++|..+-+.+...+-. ...+--.=+..+...|++++|..+.+...-||...|-++-.. +.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555544321 222222334446678999999999999988999999877553 567777777777777776
Q ss_pred CCCCCHHHHH
Q 043362 244 GIRPDGTAFV 253 (516)
Q Consensus 244 g~~p~~~t~~ 253 (516)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.00 E-value=18 Score=27.47 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 043362 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 63 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
-++|..+-+.+...+ .....+--.-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|...++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 345555555544433 1122233333445667899999999999988888888877754 4667777777777777766
Q ss_pred CCCCCHHHHHH
Q 043362 143 GVCPDAVTFVG 153 (516)
Q Consensus 143 g~~p~~~t~~~ 153 (516)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.76 E-value=2.9 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=14.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
..++...|+.++|...|+++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34445555666666666666555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.36 E-value=3.4 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.19 E-value=8.4 Score=29.03 Aligned_cols=60 Identities=7% Similarity=-0.071 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 30 EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 30 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++.+-++.+......|++....+.|+||.+.+|+..|.++++-+.... ..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455555666666778888888888888888888888888887665221 223345555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.90 E-value=13 Score=34.70 Aligned_cols=98 Identities=11% Similarity=0.211 Sum_probs=69.9
Q ss_pred cCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
.|.+....+...++..-.....++++...+-++... ...+|-.++ ..-++++++.++..=...|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 345555666666776666677788888777666521 223333332 2345778888888888889999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|..++..++..+.+.+++.+|.++.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888887776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.58 E-value=29 Score=28.72 Aligned_cols=66 Identities=3% Similarity=-0.103 Sum_probs=35.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCc-hHHHHHHHHHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQ 125 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~ 125 (516)
...+.+.+..++..+.-.- +.....-..-...+.+.|++++|.++|+++.+... ..|..-+.+++-
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3566666666666554432 11222222333446677888888888888776553 244444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.27 E-value=29 Score=35.58 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
...+.|+++.|.++-.+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 344678888887775443 3456788888888888888888888876543 45666677777776665555
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555522 22334466678888887777654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.23 E-value=0.63 Score=38.50 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=50.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 233 (516)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.+..++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666677777777777666556677788888888888776777776663322 3333455555556666666
Q ss_pred HHHHHH
Q 043362 234 VQLFDE 239 (516)
Q Consensus 234 ~~~~~~ 239 (516)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.07 E-value=4.2 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3555666666666666666666666543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.64 E-value=21 Score=35.41 Aligned_cols=136 Identities=8% Similarity=-0.012 Sum_probs=78.6
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
..|++..|.+-+....+.+.-.|+.. ......+...|.++.+...+.... ......+-..++......|+.++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34666655554444444333334333 333344556777777777766543 23445666777777777788888888
Q ss_pred HHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 043362 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400 (516)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 400 (516)
..+.|+..+-.++......+..-...|-++++...++.+...+.+ ...-|+..-+....|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceec
Confidence 887777655444444444444455667777888777777554332 233355444443344
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.49 E-value=22 Score=33.04 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 230 GEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSH--AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 230 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
..+|+.+|+.... ..+--|..+...+++.... ......-.++.+.+...++-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233344444444444332 112222233333444444445555566666666666666666666
Q ss_pred HHHhcC----CCCCHHHHHHHHHHHHhcCCHH
Q 043362 307 LIESML----VEPDGAVWGALLGACKIHKNVE 334 (516)
Q Consensus 307 ~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 334 (516)
+++... ..-|...|..+|..-...||..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 655443 1124445555555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=80.43 E-value=35 Score=28.98 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=64.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhcCC
Q 043362 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMP 210 (516)
Q Consensus 133 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 210 (516)
++.++.+.+.+++|+...+..++..+.+.|.+..-.++ +..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34455555667777777777777777777765544333 33333333322222221111110 1223333444332
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
..+..++..+...|++-+|+++.++.... +...-..++.+..+.++...-..+++-..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23455566677777777777777664221 11122334555555555544444444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.30 E-value=12 Score=32.00 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
+++|...|+++.+.+|++. .|..-+.+.. .|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 5667777788888899875 5655555543 56677777766654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.21 E-value=11 Score=35.03 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=65.6
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC-Cc-----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GL-----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 77 g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
|.+....+...++..-....+++.+...+-++... +. .+-.+.++.+. .-++++++.++..=++-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33444445555665555566777777776665432 10 11122232222 2356788888887788888889999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANG 178 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g 178 (516)
+..+|+.+.+.+++..|.++.-.++...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9888888888888888888777776643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 2e-11
Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 7/189 (3%)
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
L + P +L + V Q A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 195 RCGNLKKARAIFDGMPRK-------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
L A + + T+ + A++ G+ G + V + + +G+ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
D ++ + L +E ++ GL+ ++ RA L ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 308 IESMLVEPD 316
+ + P
Sbjct: 259 KPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 5e-08
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 8/132 (6%)
Query: 86 NCLMTMYVKCGSVDYGRKLFDQVPEKG-------LITWNAMISGYAQNGLATHVLELYRE 138
+ + L + L +NA++ G+A+ G ++ +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALINMYARCG 197
+K G+ PD +++ L + +E +Q+ G L++ R
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 198 NLKKARAIFDGM 209
LK +
Sbjct: 251 VLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 5e-08
Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 10/170 (5%)
Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLG----AHSVGLEVEQQIQANGFGSNPFLNNALINM 192
+ + + C AH + L V + + NA++
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL-LVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 193 YARCGNLKKARAIFDGMPRK----TVVSWTAIIGGYGIHGHGEVAVQ-LFDEMLKSGIRP 247
+AR G K+ + + ++S+ A + G ++ ++M + G++
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
+LS A + + L P + D+ +
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 4e-06
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 10/165 (6%)
Query: 36 GKMREQGVEINSVTMLCLLPICVDPGYLWLG----MCCHCICVKFGLDLDFSVGNCLMTM 91
G+ + + +L C+ L L + H + L + N +M
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ-RQKRKLLTLDMYNAVMLG 174
Query: 92 YVKCGSVDYGRKLFDQVPEKGL----ITWNAMISGYAQNGLATHVLELY-REMKSLGVCP 146
+ + G+ + V + GL +++ A + + +E +M G+
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
A+ +LS +V+ P + L+
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 83/578 (14%), Positives = 176/578 (30%), Gaps = 174/578 (30%)
Query: 28 VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
VS + LF + + E+ + +L Y +L + +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVL----RINYKFLMSPIKTEQRQPSMM-------- 108
Query: 88 LMTMYVKCGSVDYG--------------------RKLFDQVPEKGLITWNAMISGYAQNG 127
MY++ Y + L + P K ++ I G +G
Sbjct: 109 -TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-----IDGVLGSG 162
Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ------QIQANGFGS 181
L++ K + ++ + +C +S +E QI N + S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL-KNC-----NSPETVLEMLQKLLYQIDPN-WTS 215
Query: 182 NPFLNNALINMYARCGNLKKA-RAIFDGMPRKTV------VSWTAIIGGYGIHGHGEVAV 234
+ N+ R +++ R + P + V A
Sbjct: 216 RS---DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKA------------W 259
Query: 235 QLFD---EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
F+ ++L + T F V S A T L+ + L P E +
Sbjct: 260 NAFNLSCKILLT------TRFKQVTDFLSAATTTHISLD-----HHSMTLTP-DE----V 303
Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWG-----ALLGA-CKIH-------KNVELAEL 338
LL + L+ L P + +++ + K+V +L
Sbjct: 304 KSLLLKY------LDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 339 AFGKVIK-----LEPMNT-GYYVLLSNIYSEARNL----------DGIMR-VRMMMRE-- 379
+I+ LEP + LS ++ + ++ D I V +++ +
Sbjct: 356 T--TIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 380 RR--LKKDPGYSYVELKG---RVHLFMVGDRNHHQT-VEIYRMLDKLENLVQEHDGTKRS 433
+ ++K P S + + + + + + H++ V+ Y + ++ D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS----DDLIPPY 468
Query: 434 DQKNSEE----HLNDTEVHSEKLA----------------IAFGIINTSPGTEIVVMKNL 473
+ HL + E H E++ + G+ + ++ L
Sbjct: 469 LDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 474 R-----ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506
+ IC + + +LV+ I+D F+ + K
Sbjct: 528 KFYKPYICDNDPKYERLVNAILD--FLPKIEENLICSK 563
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 280 GLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLG-ACKIHKNVELA 336
G P + + ++ G + EA+ L L V P+ A + L + ++ A
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
+ + + I++ P Y + N E +++
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQ 94
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 2/115 (1%)
Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE 314
++ + +++ + A+ ++ +L V
Sbjct: 91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150
Query: 315 PDGAVWGALLGACKIH-KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
A L C I A KL+ NT + +S +Y + + +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACK 328
E +Y + + T + + ++A + +L P+ +
Sbjct: 39 EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98
Query: 329 IHK-NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
+ + + A + K+++LE N + L N Y + + ++ ++L
Sbjct: 99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE---KKKLETDYKKLSSPTK 155
Query: 388 YSY 390
Y
Sbjct: 156 MQY 158
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 295 LGRAGQLNEALELIESML-VEPDGAVWGALLGACKIH-KNVELAELAFGKVIKLEPMNTG 352
+G A+ ++ +L V A L C I A KL+ NT
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 353 YYVLLSNIYSEARNLD 368
+ +S +Y + + +
Sbjct: 213 AFYKISTLYYQLGDHE 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.37 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.33 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.28 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.12 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.08 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.32 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.1 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.07 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.23 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.23 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.09 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.95 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.77 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.97 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.63 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.04 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.06 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.3 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.89 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.4 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.37 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.42 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.25 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.0 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.92 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.62 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.25 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.1 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.66 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.1 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.96 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.0 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=306.11 Aligned_cols=370 Identities=11% Similarity=0.004 Sum_probs=321.4
Q ss_pred ccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC
Q 043362 2 FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 2 f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
|+. +| .+++.+|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|...|++++|.++++.+... +++
T Consensus 76 ~~~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 76 QNT-DS-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp --------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred ccc-ch-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 556 77 789999999999999999999999999999854 688899999999999999999999999987654 788
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccC-CC------------------CchHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVP-EK------------------GLITWNAMISGYAQNGLATHVLELYREMKSL 142 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~-~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 142 (516)
..+++.++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999543 33 3689999999999999999999999998654
Q ss_pred CC----------------------------------------------------------------------CCCHHHHH
Q 043362 143 GV----------------------------------------------------------------------CPDAVTFV 152 (516)
Q Consensus 143 g~----------------------------------------------------------------------~p~~~t~~ 152 (516)
+. +++..++.
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 31 26777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC---------------------------------CCchHHHHHHHHHHHhCCCH
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANGF---------------------------------GSNPFLNNALINMYARCGNL 199 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g~---------------------------------~~~~~~~~~li~~y~~~g~~ 199 (516)
.++.++.+.|++++|.++++++.+.+. +.+..+++.++.+|.++|++
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 889999999999999999999876432 33567888899999999999
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998774 3468899999999999999999999999998863 4578899999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-------VEPD--GAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 277 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
+. .+.++.+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|++++|...++++.+.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 64 23478899999999999999999999999884 3676 7899999999999999999999999999999
Q ss_pred CCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=278.16 Aligned_cols=346 Identities=10% Similarity=-0.040 Sum_probs=306.3
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-hhhHHH-------------------------------------
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEIN-SVTMLC------------------------------------- 52 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~------------------------------------- 52 (516)
++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 68999999999999999999999999999864 43 333222
Q ss_pred -HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHHcCC
Q 043362 53 -LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQNGL 128 (516)
Q Consensus 53 -ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 128 (516)
++..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 244556778899999999988776 68999999999999999999999999999853 357899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
+++|.++|+++.+. .+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999865 35578899999999999999999999999999864 45688999999999999999999999998
Q ss_pred CC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCC
Q 043362 209 MP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQ 282 (516)
Q Consensus 209 m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~ 282 (516)
+. ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +..
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 75 3478899999999999999999999999999863 4578899999999999999999999999998643 557
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 283 PG--PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 283 p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
|+ ..+|..++.+|.+.|++++|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++.++..++
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 77 7899999999999999999999999886 335 7999999999999999999999999999999999999999998
Q ss_pred hHHHH
Q 043362 359 NIYSE 363 (516)
Q Consensus 359 ~~~~~ 363 (516)
.+|..
T Consensus 592 ~~~~~ 596 (597)
T 2xpi_A 592 RALEE 596 (597)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-26 Score=227.61 Aligned_cols=354 Identities=13% Similarity=0.060 Sum_probs=310.8
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
+...+.+.|++++|+..+..+.+.. +.+...+..+...+...+++++|...++..++.. +.+..++..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999998763 3344556666777888999999999999998876 6788899999999999999
Q ss_pred HHHHHHHHcccCC--C-CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 043362 98 VDYGRKLFDQVPE--K-GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLGAHSVGLEVEQQ 173 (516)
Q Consensus 98 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 173 (516)
+++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 3468999999999999999999999999875 354 45667778889999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043362 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250 (516)
Q Consensus 174 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 250 (516)
+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|++..... +.+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 99874 4567899999999999999999999999875 3467789999999999999999999999998853 33578
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGAC 327 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 327 (516)
++..+..++...|++++|...|+++.+. .| ++..|..+...|.+.|++++|.+.++++. .+++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8899999999999999999999999864 34 57789999999999999999999999886 334789999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-29 Score=251.34 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=162.7
Q ss_pred HHHHHcccCCCCc-----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 043362 101 GRKLFDQVPEKGL-----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA---------HSV 166 (516)
Q Consensus 101 A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~ 166 (516)
+..+++++.++.. ..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444455544332 45788888899999999999999999988999999999999998886554 678
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999998886 46889999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 043362 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298 (516)
Q Consensus 243 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 298 (516)
.|+.||..||++||.+|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999876 9999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=252.79 Aligned_cols=212 Identities=12% Similarity=0.097 Sum_probs=176.8
Q ss_pred hHHHHHHHHhHHCCCCCCh-hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 043362 29 SEAVSLFGKMREQGVEINS-VTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107 (516)
Q Consensus 29 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~ 107 (516)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 4556677788877766554 358888999999999999999999999999999999999999999887754321
Q ss_pred cCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHH
Q 043362 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187 (516)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 187 (516)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1234578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 188 ALINMYARCGNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999986 5799999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-25 Score=222.32 Aligned_cols=349 Identities=12% Similarity=0.045 Sum_probs=308.2
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++..+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 45667778888999999999999999988764 6678899999999999999999999999999885 556778999999
Q ss_pred HHHHcCCHHHHHHHHcccCC--CC-chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 91 MYVKCGSVDYGRKLFDQVPE--KG-LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
.|.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764 33 4678889999999999999999999998753 34578899999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043362 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244 (516)
Q Consensus 168 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 244 (516)
...++++++.+ +.+...+..+...+...|++++|...|++.. ..+..+|..+..+|.+.|++++|++.|+++.+..
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999975 4567889999999999999999999998764 3467899999999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHH
Q 043362 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGA 322 (516)
Q Consensus 245 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ 322 (516)
+.+..++..+..++...|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++. ..| +..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 335678999999999999999999999999874 35578899999999999999999999999987 445 5889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
+...+...|++++|...++++++..|+++.+|..++.++...|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999988877653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-23 Score=209.03 Aligned_cols=317 Identities=12% Similarity=0.050 Sum_probs=213.9
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++.+|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445555555555555555555555555432 2334445555555555555555555555555443 333444444455
Q ss_pred HHHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
+|.+.|++++|.+.|+++.+.+. .+|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 55555555555555444433221 2333332221100 111223346667788
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887777754 4467777888888888888888888887764 3467788888888888888889988888888
Q ss_pred HcCCCCC-HHHHHHH------------HHHHhccCChHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 043362 242 KSGIRPD-GTAFVSV------------LSACSHAGLTDKGLEYFYGMKNKYGLQPG-----PEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 242 ~~g~~p~-~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 303 (516)
.. .|+ ...+..+ ...|.+.|++++|..+|..+.+. .|+ ..++..+...+.+.|++++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 64 344 3333333 78899999999999999999865 444 4578899999999999999
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
|...++++. ..| +..+|..+..+|...|++++|...+++++++.|+++.++..+.
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999875 345 6899999999999999999999999999999999998888888
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=213.71 Aligned_cols=362 Identities=11% Similarity=-0.057 Sum_probs=308.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
.+..|-.....+.+.|++++|+..|+++.... |+..++..+..++...|++++|.+.++.+++.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45567788899999999999999999999874 799999999999999999999999999999986 667789999999
Q ss_pred HHHHcCCHHHHHHHHcccCCCC----------------------------------------------------------
Q 043362 91 MYVKCGSVDYGRKLFDQVPEKG---------------------------------------------------------- 112 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~~~---------------------------------------------------------- 112 (516)
+|.+.|++++|...|+++.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999998763221
Q ss_pred ------------------------chHHHHHHHHHHH---cCChhHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 043362 113 ------------------------LITWNAMISGYAQ---NGLATHVLELYREMKS-----LGV--------CPDAVTFV 152 (516)
Q Consensus 113 ------------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~ 152 (516)
...|......+.. .|++++|+..|+++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1222333333343 8999999999999987 311 12345777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGH 229 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 229 (516)
.+...+...|++++|...++.+.+.... ..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987633 88899999999999999999999987653 367789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+++|+..|++..+.. +.+..++..+...+...|++++|...+..+.+. .+.+...+..+...|.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998863 335678889999999999999999999999865 23356788999999999999999999998
Q ss_pred hcC----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 310 SML----VEPD----GAVWGALLGACKI---HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 310 ~m~----~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
++. ..|+ ..+|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875 1222 4488899999999 9999999999999999999999999999999999999999999999987
Q ss_pred hC
Q 043362 379 ER 380 (516)
Q Consensus 379 ~~ 380 (516)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-21 Score=193.74 Aligned_cols=294 Identities=13% Similarity=0.043 Sum_probs=213.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 157 (516)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 334444555555555555555555544432 123445555555555555555555555554432 2234444455555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCch---HHHHH------------HHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNP---FLNNA------------LINMYARCGNLKKARAIFDGMP---RKTVVSWTA 219 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~------------li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~ 219 (516)
+...|++++|...++.+.+.. +.+. ..+.. +...|.+.|++++|.+.|+++. ..+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 555555555555555554432 1122 33333 3555888999999999999875 347889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHH-------
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCM------- 291 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l------- 291 (516)
+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+... .| +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 456789999999999999999999999999864 44 34444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 292 -----VDLLGRAGQLNEALELIESML-VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 292 -----i~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
...+.+.|++++|.+.|+++. ..|+ ...|..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 788999999999999999886 4455 45788889999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 043362 361 YSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 361 ~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...|++++|.+.++.+.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-21 Score=196.93 Aligned_cols=361 Identities=12% Similarity=-0.004 Sum_probs=295.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34678888999999999999999999999874 5577889999999999999999999999999987 667889999999
Q ss_pred HHHHcCCHHHHHHHHcccCC-CCch-------------------------------------------------------
Q 043362 91 MYVKCGSVDYGRKLFDQVPE-KGLI------------------------------------------------------- 114 (516)
Q Consensus 91 ~~~~~g~~~~A~~~f~~~~~-~~~~------------------------------------------------------- 114 (516)
.|.+.|++++|...|+.+.. ++..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999864421 1100
Q ss_pred --------------HHHHHHHHHH--------HcCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhcCCh
Q 043362 115 --------------TWNAMISGYA--------QNGLATHVLELYREMKSLGVCPD--------AVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 115 --------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~ 164 (516)
.+..+...+. ..|++++|+.+|+++.+. .|+ ..++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1111111111 124788999999999875 344 23466667788899999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...++.+.+.. |+..++..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|...|++..
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999974 457889999999999999999999999875 3467889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---C---
Q 043362 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V---E--- 314 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~--- 314 (516)
+.. +.+...+..+...+...|++++|..++..+.+. .+.+...+..+...|...|++++|.+.++++. . .
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 863 335678889999999999999999999999875 23357788999999999999999999999875 1 1
Q ss_pred -CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 315 -PDGAVWGALLGACKIH----------KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 315 -p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.....+..+...+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++...+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344555667777 99999999999999999999999999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=196.67 Aligned_cols=344 Identities=13% Similarity=-0.029 Sum_probs=288.7
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC--------
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-------- 80 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------- 80 (516)
.||+.+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|...++.+++.+...
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 4789999999999999999999999999999874 4556789999999999999999999999988775211
Q ss_pred ----------------------------------------------------------------------ChhHHHHHHH
Q 043362 81 ----------------------------------------------------------------------DFSVGNCLMT 90 (516)
Q Consensus 81 ----------------------------------------------------------------------~~~~~~~ll~ 90 (516)
+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 1222233333
Q ss_pred HHHH---cCCHHHHHHHHcccCC-----C------------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 91 MYVK---CGSVDYGRKLFDQVPE-----K------------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 91 ~~~~---~g~~~~A~~~f~~~~~-----~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
.+.. .|++++|...|+++.+ . +..+|..+...+...|++++|+..|+++.+.. |+..+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 3333 8999999999988755 2 24678899999999999999999999998864 44778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhc
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIH 227 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 227 (516)
+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++.. ..+..+|..+...|...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 8889999999999999999999999864 4567889999999999999999999998764 34677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHh---cCC
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGR---AGQ 300 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~ 300 (516)
|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+...-.++ ...+..+...|.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998853 345678889999999999999999999998865322233 4488999999999 999
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 301 LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+++|...++++. ..| +..+|..+...+...|++++|...++++.++.|+++..+..+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999876 334 588899999999999999999999999999999887666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-19 Score=172.48 Aligned_cols=322 Identities=11% Similarity=0.035 Sum_probs=211.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556666777777777777777777776653 3345556666666666666666666666666654 3345556666666
Q ss_pred HHHcCCHHHHHHHHcccCCCCc------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 92 YVKCGSVDYGRKLFDQVPEKGL------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
|.+.|++++|...|++..+.+. ..|..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666665543222 12222210000 001112245566667777
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 166 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
+|...++.+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777766653 3456666777777777777777777776654 23566777777778888888888888887776
Q ss_pred cCCCCCHHHHH------------HHHHHHhccCChHHHHHHHHHhHHhcCCCCC-H----HHHHHHHHHHHhcCCHHHHH
Q 043362 243 SGIRPDGTAFV------------SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-P----EHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 243 ~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~ 305 (516)
.. +.+...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...|...|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 42 22222222 2355678889999999999888865 233 2 23556778888899999999
Q ss_pred HHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 306 ELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 306 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
+.+++.. ..| +..+|..+...+...|++++|...++++++++|++...+..+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9988876 345 688888888999999999999999999999999888777777666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-18 Score=168.20 Aligned_cols=304 Identities=12% Similarity=-0.000 Sum_probs=217.9
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHH
Q 043362 48 VTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYA 124 (516)
Q Consensus 48 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~ 124 (516)
..+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+. +..+|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555555666666666666666666554 344555666666666666666666666554321 2345555666666
Q ss_pred HcCChhHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHH
Q 043362 125 QNGLATHVLELYREMKSLGVCP---D-AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 200 (516)
..|++++|+..|++..+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 666666666666665543 23 1 111111111100 111233467889999999
Q ss_pred HHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 201 KARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 201 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+|.+.|+++. ..+...|..+...|...|++++|+..+++..+.. +.+..++..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999875 3477889999999999999999999999998863 45678889999999999999999999999986
Q ss_pred hcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhcC-CCCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 043362 278 KYGLQPGPEHYT------------CMVDLLGRAGQLNEALELIESML-VEPD-G----AVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 278 ~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~-~~p~-~----~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
.. +.+...+. .+...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 52 22333332 33667899999999999999876 3454 3 2345577889999999999999
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++++.+..|+++.++..++.+|...|++++|.+.++...+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=167.26 Aligned_cols=286 Identities=15% Similarity=0.066 Sum_probs=180.2
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043362 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155 (516)
Q Consensus 79 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 155 (516)
+.+..++..+...+...|++++|.++|+++.+. +...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 334444455555555556666666655554322 22344455555566666666666666655532 22344555555
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHH
Q 043362 156 SSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGE 231 (516)
Q Consensus 156 ~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 231 (516)
..+...| ++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++. ..+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5556666 5666666666665543 2344556666666666666666666665543 223455555666677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG-------LQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 232 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
+|...|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766642 33456666777777777777777777777665321 123456777888888888888888
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH-HHcCCh
Q 043362 305 LELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY-SEARNL 367 (516)
Q Consensus 305 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 367 (516)
.+.+++.. ..| +...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888765 233 5777888888888888888888888888888888888888888777 344443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=178.47 Aligned_cols=338 Identities=13% Similarity=0.046 Sum_probs=269.9
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCC----------
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLD---------- 79 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---------- 79 (516)
.++.+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|...++.+ .....
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPML 134 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHH
Confidence 478899999999999999999999999999875 456778888999999999999999988633 21100
Q ss_pred ---------------------------CChh------------------------------HHHHHHHHHHH--------
Q 043362 80 ---------------------------LDFS------------------------------VGNCLMTMYVK-------- 94 (516)
Q Consensus 80 ---------------------------~~~~------------------------------~~~~ll~~~~~-------- 94 (516)
|+.. ....+...+..
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0000 22222222221
Q ss_pred cCCHHHHHHHHcccCCCCc----------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 95 CGSVDYGRKLFDQVPEKGL----------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
.|++++|..+|+++.+.+. .+|..+...+...|++++|+..|++..+. .|+..++..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 2478899999988865432 35777888899999999999999999885 56778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...+..+.+.. +.+..++..+...|...|++++|.+.|++.. ..+...|..+...|...|++++|...|+++.
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999875 4568889999999999999999999999875 3467789999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhc----------CCHHHHHHH
Q 043362 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----GPEHYTCMVDLLGRA----------GQLNEALEL 307 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~ 307 (516)
+.. +.+...+..+...+...|++++|...++.+.+...-.+ ....+..+...|.+. |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 863 44567888999999999999999999999876421111 222344556777788 999999999
Q ss_pred HHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 308 IESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 308 ~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+++.. ..| +..+|..+...+...|++++|...++++.++.|++...
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99876 345 58889999999999999999999999999999987644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=168.62 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=139.9
Q ss_pred ccccCCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC
Q 043362 2 FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 2 f~~~m~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
|++ ++ .| .+|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++..++. .++
T Consensus 26 ae~-~~-~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~ 93 (449)
T 1b89_A 26 AER-CN-EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHh-CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Ccc
Confidence 455 55 55 4999999999999999999999965 367789999999999999999999988887774 556
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 161 (516)
+.+.+.|+.+|.++|+++++.++|+. ++..+|+.+...|...|.+++|...|..+ ..|..+..++.+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp ---------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 78899999999999999999988864 66779999999999999999999999977 3789999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|..+++...
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999988 378999999999999999999988887765 444445568999999999999999999987
Q ss_pred HcCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 242 KSGIRPDGTAFVSVLSACSH--AGLTDKGLEYFYGMKNKYGLQP------GPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
... +-....|+.+.-++++ .+++.+..+.|.. +-+++| +...|..++-.|..-++++.|...+-+-+
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 643 3345566666555554 4445555554442 224444 46789999999999999999988766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-17 Score=156.89 Aligned_cols=286 Identities=12% Similarity=0.020 Sum_probs=193.6
Q ss_pred CCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHH
Q 043362 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMI 120 (516)
Q Consensus 44 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li 120 (516)
+.+...+..+...+...|++++|.++++.+++.. +.+...+..++..+.+.|++++|..+|+++.+ .+..+|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3444455555555556666666666666666554 34444555566666666666666666665543 2345666666
Q ss_pred HHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCH
Q 043362 121 SGYAQNG-LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199 (516)
Q Consensus 121 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 199 (516)
..+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 6777777777766542 2245566666677777777777777777776654 23445566677777777777
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhccCChHHH
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--------IRPDGTAFVSVLSACSHAGLTDKG 268 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a 268 (516)
++|.+.|++.. ..+...|..+...|...|++++|...|++..+.. .+.+..++..+...+...|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777654 2356777888888888888888888888876631 133456788888888999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH-HhcCCHH
Q 043362 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGAC-KIHKNVE 334 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~-~~~g~~~ 334 (516)
...+++..+.. +.+...+..+...|.+.|++++|.+.+++.. ..| +...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999888641 3356788888999999999999999999886 455 577777777766 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-18 Score=164.52 Aligned_cols=280 Identities=13% Similarity=-0.023 Sum_probs=219.1
Q ss_pred HHcCCHHHHHH-HHcccCCC-------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 043362 93 VKCGSVDYGRK-LFDQVPEK-------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164 (516)
Q Consensus 93 ~~~g~~~~A~~-~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 164 (516)
.-.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 77654321 24567888888889999999999999888763 44667888888888889999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHH---------------HHHHHHh
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK---TVVSWTA---------------IIGGYGI 226 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~---------------li~~~~~ 226 (516)
++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999998888865 456778888888899999999998888876421 2222221 1333448
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 305 (516)
.|++++|+..|+++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999998853221 4788999999999999999999999999864 2335788999999999999999999
Q ss_pred HHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----------ccchHHHhhHHHHcCChhHHHH
Q 043362 306 ELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-----------TGYYVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 306 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 372 (516)
..++++. ..| +..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999876 344 58899999999999999999999999999988877 7789999999999999999998
Q ss_pred HHHH
Q 043362 373 VRMM 376 (516)
Q Consensus 373 ~~~~ 376 (516)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-16 Score=156.47 Aligned_cols=352 Identities=13% Similarity=0.067 Sum_probs=298.0
Q ss_pred CCcccHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc----CCCchHHHHHHHHHHHhCCCCC
Q 043362 10 HLTVCYNALISGYVL----NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD----PGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 10 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
.|+.++..|-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777778888888 899999999999998875 45677777777877 899999999999998875 6
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHcccCCCC-chHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043362 82 FSVGNCLMTMYVK----CGSVDYGRKLFDQVPEKG-LITWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVTFV 152 (516)
Q Consensus 82 ~~~~~~ll~~~~~----~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 152 (516)
...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777889999998 889999999999876654 5688888888888 789999999999998865 677788
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 043362 153 GVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAIIGG 223 (516)
Q Consensus 153 ~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~ 223 (516)
.+...+.. .++.++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888887 899999999999999876 56778889999987 8999999999998654 467778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 224 YGI----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA-----GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 224 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|.+..+. + +...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999998764 455667777777776 8999999999999864 2 56778888888
Q ss_pred HHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH----
Q 043362 295 LGRAG---QLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE---- 363 (516)
Q Consensus 295 ~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 363 (516)
|...| ++++|.+.|++.....+...+..|...|.. .+++++|...++++.+.+ ++.++..|+.+|.+
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88867 789999999988644678899999999988 899999999999998865 46789999999998
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 043362 364 ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 364 ~g~~~~a~~~~~~m~~~~~ 382 (516)
.++.++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-16 Score=147.97 Aligned_cols=268 Identities=10% Similarity=-0.007 Sum_probs=216.6
Q ss_pred HHHcCCHHHHHHHHcccCCCCc----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043362 92 YVKCGSVDYGRKLFDQVPEKGL----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 167 (516)
....|+++.|...++.....+. .....+..+|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4457999999999888766543 3556678899999999999986654 2356777888888899999999999
Q ss_pred HHHHHHHHHcCC-CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043362 168 LEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246 (516)
Q Consensus 168 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 246 (516)
.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 999999988764 44577788888999999999999999998 567889999999999999999999999999986 3
Q ss_pred CCHHHH---HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHH
Q 043362 247 PDGTAF---VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWG 321 (516)
Q Consensus 247 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 321 (516)
|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+...+.+.|++++|...+++.. ..| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 554321 12334445669999999999999975 34578899999999999999999999999976 456 688999
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH
Q 043362 322 ALLGACKIHKNVEL-AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 322 ~ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
.++..+...|+.++ +..+++++++++|+++. +.....+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 99999999998865 67899999999999874 33455566666655543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=161.76 Aligned_cols=276 Identities=12% Similarity=-0.043 Sum_probs=216.4
Q ss_pred CHHHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043362 97 SVDYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173 (516)
Q Consensus 97 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 173 (516)
....+...+...+. .+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444443332 234668889999999999999999999998753 44677888999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-------------VVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 174 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|+..|+++
T Consensus 125 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 125 CLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 98874 4567889999999999999999999998875321 223344578899999999999999999
Q ss_pred HHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CH
Q 043362 241 LKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DG 317 (516)
Q Consensus 241 ~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~ 317 (516)
.+.... ++..++..+...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|...|+++. ..| +.
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Confidence 986422 16788999999999999999999999999865 23468899999999999999999999999876 445 58
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------CccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPM------------NTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.+|..+...|...|++++|...+++++++.|+ +...+..+..++...|+.+.+.++.+.
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 89999999999999999999999999998766 356788999999999999988877654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=168.23 Aligned_cols=281 Identities=10% Similarity=0.068 Sum_probs=134.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHH
Q 043362 59 DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138 (516)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 138 (516)
+.|++++|.+.++.+ +++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++.+.|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456788888888776 23358889999999999999999999764 5666888888899999999999997766
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHH
Q 043362 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218 (516)
Q Consensus 139 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 218 (516)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 6653 4557788888999999999998887774 366778999999999999999999999977 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 043362 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298 (516)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 298 (516)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHC
Confidence 9999999999999999999987 2678999999999999999999655443 223555566788999999
Q ss_pred CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCC-----CCccchHHHhhHHHHcCChhH
Q 043362 299 GQLNEALELIESML-VEP-DGAVWGALLGACKIH--KNVELAELAFGKVIKLEP-----MNTGYYVLLSNIYSEARNLDG 369 (516)
Q Consensus 299 g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~ 369 (516)
|++++|..+++... .++ ....|+-|.-+|++. ++..+.+++|..-+.+.| .+...|..+...|.+-++++.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999999998876 333 477777777777665 455666666665555556 677889999999999999998
Q ss_pred HHHH
Q 043362 370 IMRV 373 (516)
Q Consensus 370 a~~~ 373 (516)
|..+
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-15 Score=151.42 Aligned_cols=335 Identities=13% Similarity=0.034 Sum_probs=281.0
Q ss_pred CCcccHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhc----CCCchHHHHHHHHHHHhCCCCC
Q 043362 10 HLTVCYNALISGYVL----NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD----PGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 10 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
-++.++..|-..|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...++...+.| +
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 146 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---R 146 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 356778888888988 899999999999998875 55666677777776 789999999999998876 5
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHcccCCC-CchHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043362 82 FSVGNCLMTMYVK----CGSVDYGRKLFDQVPEK-GLITWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVTFV 152 (516)
Q Consensus 82 ~~~~~~ll~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 152 (516)
...+..|..+|.. .++.++|.+.|++..+. +..++..+...|.+ .+++++|++.|++..+.| +..++.
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 223 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQL 223 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778888999988 78999999999987654 46788889999988 899999999999998865 556777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 043362 153 GVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAIIGG 223 (516)
Q Consensus 153 ~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~ 223 (516)
.+...+.. .+++++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777775 789999999999999875 55677788888888 8999999999998764 467788888888
Q ss_pred HHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 224 YGIH-----GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 224 ~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .++..+..|..+|
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 8887 89999999999999865 4556677777777656 789999999999864 3688888999999
Q ss_pred Hh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC---CccchHHHhhHHHH
Q 043362 296 GR----AGQLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPM---NTGYYVLLSNIYSE 363 (516)
Q Consensus 296 ~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 363 (516)
.. .+++++|.+.|++.....+...+..|...|.. .++.++|...|+++.+.+|+ ++.....+..++..
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 98 89999999999988644578888889988887 89999999999999999854 66677777777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-16 Score=157.49 Aligned_cols=365 Identities=10% Similarity=-0.059 Sum_probs=248.1
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHC-----C---CCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-----
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQ-----G---VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG----- 77 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 77 (516)
.+..||.|...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...++.+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999887542 1 12235678899999999999999999998887641
Q ss_pred -C-CCChhHHHHHHHHHHHcC--CHHHHHHHHcccCC--C-CchHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCC
Q 043362 78 -L-DLDFSVGNCLMTMYVKCG--SVDYGRKLFDQVPE--K-GLITWNAMISG---YAQNGLATHVLELYREMKSLGVCPD 147 (516)
Q Consensus 78 -~-~~~~~~~~~ll~~~~~~g--~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 147 (516)
. .....+++.+..++.+.| ++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 123456666666666654 68999999998754 3 34455555544 345678889999999887753 335
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHH
Q 043362 148 AVTFVGVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAI 220 (516)
Q Consensus 148 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~l 220 (516)
..++..+...+.. .+++++|.+.+++..+.. +.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5566666555554 457788999999988865 4567888999999999999999999998865 2356667766
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 221 IGGYGIH-------------------GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 221 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
...|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK--- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---
Confidence 6665432 23567888888877753 334567788889999999999999999998854
Q ss_pred CCCHH----HHHHHHH-HHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 282 QPGPE----HYTCMVD-LLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 282 ~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
.|+.. .+..+.. .+...|+.++|...+++.. ..|+...+... ...+..++++.++.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 33332 2233333 2346799999999998875 56664433222 34566778888889999999999
Q ss_pred HHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeE
Q 043362 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 390 (516)
.|+.+|...|++++|.+.+++..+.+-..+...+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999998876544444555
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=158.07 Aligned_cols=263 Identities=11% Similarity=-0.007 Sum_probs=184.1
Q ss_pred ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCchHHHHHHHH
Q 043362 46 NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---KGLITWNAMISG 122 (516)
Q Consensus 46 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 122 (516)
+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456666666777777777777777777665 45666777777777777777777777776543 234677777777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CchHHHHHHH
Q 043362 123 YAQNGLATHVLELYREMKSLGVCPDA-----------VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALI 190 (516)
Q Consensus 123 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li 190 (516)
|.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...++++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 77777777777777777653 2321 22233466777888888888888888776422 1577788888
Q ss_pred HHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 043362 191 NMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 267 (516)
..|.+.|++++|.+.|++.. ..+..+|+.+..+|...|++++|+..|+++.+.. +.+..++..+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 88888888888888887754 3467788888888888888888888888887752 3346778888888888899999
Q ss_pred HHHHHHHhHHhcCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 268 GLEYFYGMKNKYGLQ----------PGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 268 a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
|...|+++.+...-. .+...|..+...+...|+.+.|..+.++-+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 988888887542110 135778899999999999999998887643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=158.23 Aligned_cols=295 Identities=11% Similarity=-0.002 Sum_probs=138.5
Q ss_pred hCCCchHHHH-HHHHhHHCCC-CC--ChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 043362 24 LNSLVSEAVS-LFGKMREQGV-EI--NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99 (516)
Q Consensus 24 ~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 99 (516)
..|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455555555 5554432210 01 23345555555566666666666666666553 444555566666666666666
Q ss_pred HHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 100 YGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 100 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
+|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+. ..+..+... .
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~---------- 176 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------A---------- 176 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------h----------
Confidence 66666655432 233455556666666666666666666655532 221 111100000 0
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC--CC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 250 (516)
+.......+..+...+ ..|++++|.+.|+++. .| +..+|..+...|.+.|++++|+..|+++.... +.+..
T Consensus 177 --~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 177 --GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred --hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0000000000112222 4455555555554432 11 24455555555555555555555555555431 22344
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-C-----------H
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-D-----------G 317 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~-----------~ 317 (516)
++..+...+...|++++|...++++.+. -+.+...+..+...|.+.|++++|...++++. ..| + .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 5555555555556666666555555542 12234555555566666666666665555543 111 1 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
.+|..+..++...|+.++|..++++.+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 566666666666666666666655433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=152.28 Aligned_cols=259 Identities=8% Similarity=-0.046 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 193 (516)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555556666666666666666655532 2244555555566666666666666666665543 33455566666666
Q ss_pred HhCCCHHHHHHHHhcCCC---CCHhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043362 194 ARCGNLKKARAIFDGMPR---KTVVSWTAI--------------IG-GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 255 (516)
...|++++|.+.|+++.+ .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666655431 122222222 22 3677889999999999998863 3467888899
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
...+...|++++|...+..+.+. .+.+...+..+...|...|++++|.+.++++. ..| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999864 23357889999999999999999999999876 334 588999999999999999
Q ss_pred HHHHHHHHHHhhcCCC------------CccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 334 ELAELAFGKVIKLEPM------------NTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
++|...++++.+..|+ +...+..++.+|.+.|++++|..+++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 6788999999999999999999988644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-15 Score=152.67 Aligned_cols=364 Identities=10% Similarity=0.002 Sum_probs=242.8
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
|+.+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|+.+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 7789999998 578999999999999999762 4456678889999999999999999999998874 57778887775
Q ss_pred HH-HHcCCHHHHHH----HHcccC-----C-CCchHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHHH
Q 043362 91 MY-VKCGSVDYGRK----LFDQVP-----E-KGLITWNAMISGYAQ---------NGLATHVLELYREMKSLGVCPDAVT 150 (516)
Q Consensus 91 ~~-~~~g~~~~A~~----~f~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t 150 (516)
.. ...|+++.|.+ +|++.. . .+...|...+....+ .|++++|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45677776655 666542 1 234678777776654 6889999999999887311111233
Q ss_pred HHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCc--------hHHHHHHHHHHHhC----
Q 043362 151 FVGVLSSC-------------AHLGAHSVGLEVEQQIQ------ANG---FGSN--------PFLNNALINMYARC---- 196 (516)
Q Consensus 151 ~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~y~~~---- 196 (516)
|....... ...+.+..|..++.... +.. ++|+ ...|...+..-...
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 33222111 12345566666665532 111 2332 23555555433221
Q ss_pred CCH----HHHHHHHhcCC---CCCHhHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHH
Q 043362 197 GNL----KKARAIFDGMP---RKTVVSWTAIIGGYGI-------HGHGE-------VAVQLFDEMLKSGIRPDGTAFVSV 255 (516)
Q Consensus 197 g~~----~~A~~~~~~m~---~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~l 255 (516)
++. +.|..+|++.. ..+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...+..+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 222 35566666654 2356777777777765 67766 788888877652123346677777
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHH-HHhc
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPG-P-EHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGA-CKIH 330 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~-~~~~ 330 (516)
+..+...|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++.. ..|+ ...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 77778888888888888888753 443 2 477777777778888888888888765 2232 2222222212 3357
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 888888888888888888888888888888888888888888888877653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=150.88 Aligned_cols=276 Identities=8% Similarity=-0.076 Sum_probs=176.2
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
.+...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 366777788888888888888888888887763 3456667777777778888888888888877764 45566677777
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCh
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS--SCAHLGAH 164 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~ 164 (516)
..|.+.|++++|.+.|+++.+.+. ..+..+... .|+......+.. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 777777777777777766543221 222222000 011111111101 24455666
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 241 (516)
++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|...|+++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666543 2345566666666666666666666666543 2345667777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-----------GPEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 242 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
+.. +.+..++..+...+...|++++|...++++.+.. ... +...+..+...|.+.|+.++|..++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 642 3346667777777778888888888887776541 110 356777888888888888888888776
Q ss_pred cC
Q 043362 311 ML 312 (516)
Q Consensus 311 m~ 312 (516)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 54
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=146.53 Aligned_cols=246 Identities=10% Similarity=0.023 Sum_probs=203.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDA--VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 197 (516)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999887644 34554 3556678899999999999976644 24567888899999999999
Q ss_pred CHHHHHHHHhcCC----CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 198 NLKKARAIFDGMP----RK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 198 ~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566778888999999999999999987 467788889999999999999999999
Q ss_pred HHhHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 273 YGMKNKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
+.+.+. .|+... ...++..+...|++++|..+|+++. ...+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 455321 2234455556699999999999986 33478999999999999999999999999999999
Q ss_pred CCCccchHHHhhHHHHcCChhH-HHHHHHHHHhC
Q 043362 348 PMNTGYYVLLSNIYSEARNLDG-IMRVRMMMRER 380 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 380 (516)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-18 Score=177.51 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=130.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMP-------RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 179 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CCHHHHHHHHHH
Q 043362 252 FVSVLSACSHAGLT-DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE----PDGAVWGALLGA 326 (516)
Q Consensus 252 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll~~ 326 (516)
|+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++...++...+... |...+...|...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999984 7899999999987 99999999999998887765555554443333211 113344445555
Q ss_pred HHhcC---------CHHHHHHHHHHHhh
Q 043362 327 CKIHK---------NVELAELAFGKVIK 345 (516)
Q Consensus 327 ~~~~g---------~~~~A~~~~~~~~~ 345 (516)
|.+.+ ..++-...|++-+.
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 66544 34566666665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=172.48 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=125.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccC-------CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVP-------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 153 (516)
-..+||+||++|+++|++++|.++|++|. .+|++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997763 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhc
Q 043362 154 VLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK-----TVVSWTAIIGGYGIH 227 (516)
Q Consensus 154 ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~ 227 (516)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+..+ .+.+...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999999888876666666665555421 123333445555544
Q ss_pred C
Q 043362 228 G 228 (516)
Q Consensus 228 g 228 (516)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-14 Score=144.78 Aligned_cols=340 Identities=11% Similarity=0.032 Sum_probs=246.0
Q ss_pred HHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC--CC
Q 043362 35 FGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KG 112 (516)
Q Consensus 35 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~ 112 (516)
|++.++.. +-|..+|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|.++|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444432 4466788888884 67899999999999999874 67788999999999999999999999999865 45
Q ss_pred chHHHHHHHH-HHHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 043362 113 LITWNAMISG-YAQNGLATHVLE----LYREMKS-LGVCP-DAVTFVGVLSSCAH---------LGAHSVGLEVEQQIQA 176 (516)
Q Consensus 113 ~~~~~~li~~-~~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 176 (516)
+..|...+.. ....|+.++|.+ +|++... .|..| +...|...+..... .|+++.|+.+|++.++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 5677777653 345678777665 7776654 35544 45566666665544 6889999999999998
Q ss_pred cCCCCchHHHHHHHHHH-------------HhCCCHHHHHHHHhc-------CC------CCC--------HhHHHHHHH
Q 043362 177 NGFGSNPFLNNALINMY-------------ARCGNLKKARAIFDG-------MP------RKT--------VVSWTAIIG 222 (516)
Q Consensus 177 ~g~~~~~~~~~~li~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~ 222 (516)
.........|....... .+.++++.|..++.. +. .|+ ...|...+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 42222234444333211 134567777766553 11 111 346666664
Q ss_pred HHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHhHHhcC
Q 043362 223 GYGIH----GHG----EVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-------AGLTD-------KGLEYFYGMKNKYG 280 (516)
Q Consensus 223 ~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~~~~~~~ 280 (516)
-.... ++. ..|..+|++.... .+-+...|..+...+.. .|+++ +|..++++..+ .
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~ 315 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--T 315 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--T
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--H
Confidence 43332 232 4788899998875 24456778777777765 79987 99999999984 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 281 LQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-G-AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 281 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
+.| +...|..++..+.+.|++++|.++|+++. ..|+ . ..|..++..+.+.|++++|..+|+++++..|.+...|..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 445 58889999999999999999999999886 4564 3 589999999999999999999999999988876666655
Q ss_pred HhhH-HHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNI-YSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~-~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+.+ +...|+.++|..+|+...+.
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHH
Confidence 4444 34689999999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-13 Score=146.04 Aligned_cols=321 Identities=12% Similarity=0.131 Sum_probs=234.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCC--CCChhhHHHHH---------------------------HHhhcCCCchHH
Q 043362 16 NALISGYVLNSLVSEAVSLFGKMREQGV--EINSVTMLCLL---------------------------PICVDPGYLWLG 66 (516)
Q Consensus 16 n~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll---------------------------~~~~~~~~~~~a 66 (516)
...+.+|...|.+.+|++++++....+- .-+...-+.++ ..+...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4578899999999999999999985421 01122222222 233344555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 043362 67 MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146 (516)
Q Consensus 67 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 146 (516)
..+|+... ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -
T Consensus 1069 f~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 55555431 1111112222 25566666666666553 2467888999999999999999998653 4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 226 (516)
|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++...+. ..++...|..+...|..
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHh
Confidence 67778889999999999999999998887754 34334445888899999988654443 35566777788888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 306 (516)
.|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|++..|..
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999874 378889999999999999999888763 56888888888888999999988
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc--CChhHHHHHHH
Q 043362 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA--RNLDGIMRVRM 375 (516)
Q Consensus 307 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 375 (516)
....+. -+...+..++..|...|.+++|+.+++..++++|.+...|..|+.+|++- ++..++.++|.
T Consensus 1272 cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1272 CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 877643 35556668889999999999999999999999998888888888888764 34445555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=133.11 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG--SNPFLNNALINM 192 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 192 (516)
.|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45555555555555555555555555543 44445555555555555555555555554442100 0000
Q ss_pred HHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
....+|..+...|...|++++|+..|++.... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00345666666666777777777777776663 3442 2344556677777777
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
+.+... .+.+...+..+...+...|++++|...+++.. ..| +..+|..+...+...|++++|...++++++..|++
T Consensus 129 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 129 EAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 777642 12245566777777778888888888777765 223 57777778888888888888888888888888888
Q ss_pred ccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+.++..++.+|...|++++|.+.++...+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888888888877764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-15 Score=134.65 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=157.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCC--CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HHHHHH
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLG--VCPD----AVTFVG 153 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 153 (516)
...+..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999987633 567889999999999999999999999987642 1122 467777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 233 (516)
+...+...|++++|...++.+.+.. |+. ..+ ...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~-------------------------------~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DIL-------------------------------TKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHH-------------------------------HHHhHHHHH
Confidence 8888888888888888888887753 231 223 333444555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 043362 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML- 312 (516)
Q Consensus 234 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 312 (516)
...++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555554421 112334555555566666666666666666543 12245566666666677777777777666654
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCccchHHH
Q 043362 313 VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE------PMNTGYYVLL 357 (516)
Q Consensus 313 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l 357 (516)
..| +..+|..+...+...|++++|...++++.++. |++...+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 233 46677777777777788888888877777776 6555444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-13 Score=144.88 Aligned_cols=317 Identities=12% Similarity=0.097 Sum_probs=252.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+.+ .+..+|..+..++.+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3445677888999999999999862 11122233333 567899998888754 457889999999999
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 99999999999764 667889999999999999999999999877654 44333445889999999988644442
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 254 (516)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 2 345566778999999999999999999985 58999999999999999999999976 35689999
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh--c
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI--H 330 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~--~ 330 (516)
+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++... .+| ....|+-|...+.+ .
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 999999999999998876543 3467788899999999999999999998875 333 35566666666654 4
Q ss_pred CCHHHHHHHHHHHhhcCC-----CCccchHHHhhHHHHcCChhHHHHH
Q 043362 331 KNVELAELAFGKVIKLEP-----MNTGYYVLLSNIYSEARNLDGIMRV 373 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 373 (516)
++..++.++|..-..+.| .+...|..++..|.+.|+++.|...
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567777777776666555 5677899999999999999999854
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=128.45 Aligned_cols=194 Identities=11% Similarity=0.022 Sum_probs=147.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 256 (516)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566777777778888888888888876542 356777888888888888888888888887753 33456777778
Q ss_pred HHHhcc-----------CChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 043362 257 SACSHA-----------GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGAL 323 (516)
Q Consensus 257 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 323 (516)
.++... |++++|...+++..+. .| +...+..+...|...|++++|...|++.. ...+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999998864 44 57788889999999999999999998876 22678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
...+...|++++|+..++++++.+|+++..+..++.++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-14 Score=129.93 Aligned_cols=241 Identities=12% Similarity=-0.067 Sum_probs=181.2
Q ss_pred HcCChhHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHH
Q 043362 125 QNGLATHVLELYREMKSLGV--CP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 201 (516)
..|++++|+..|+++.+... +| +..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888888876531 11 34567777778888888888888888888764 3467788888888888888888
Q ss_pred HHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 202 ARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 202 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|.+.|++.. ..+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888888765 236778888899999999999999999998884 455555555555667779999999999888764
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 279 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.+++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23333333 46777788888899999998876 2221 578888999999999999999999999999987643
Q ss_pred chHHHhhHHHHcCChhHHHHHH
Q 043362 353 YYVLLSNIYSEARNLDGIMRVR 374 (516)
Q Consensus 353 ~~~~l~~~~~~~g~~~~a~~~~ 374 (516)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466778888888887765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-14 Score=126.76 Aligned_cols=195 Identities=10% Similarity=-0.051 Sum_probs=140.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 89 (516)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 477788889999999999999999999998764 4566778888888999999999999999999886 66777888888
Q ss_pred HHHHHc-----------CCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043362 90 TMYVKC-----------GSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155 (516)
Q Consensus 90 ~~~~~~-----------g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 155 (516)
..|.+. |++++|...|++..+. +...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 7778877777776432 34567777777777777777777777777665 5666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 156 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
.++...|++++|...++++++.. +.+..++..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777777754 345666677777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=128.77 Aligned_cols=246 Identities=11% Similarity=0.005 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSC 158 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 158 (516)
++......|.+.|++++|...|++..+. +..+|..+...|...|++++|+..|++..+.+-.|+ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566677777777777777765432 245677777777777777777777777766321111 22366666777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHH-HHHHhcCCHHHHH
Q 043362 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAII-GGYGIHGHGEVAV 234 (516)
Q Consensus 159 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li-~~~~~~g~~~~A~ 234 (516)
...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|++..+ .+...|..+. ..|. .+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence 77777777777777777653 33456666777777777777777777766553 2444555555 3333 34666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGL---TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 311 (516)
..|++..+.. +.+...+..+...+...|+ +++|...++++.+. ....
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~ 212 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV-----------------------------CAPG 212 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-----------------------------HGGG
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-----------------------------Hhcc
Confidence 6666655531 1123334444444444443 33344444333321 1111
Q ss_pred CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 312 LVEPD------GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 312 ~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
|+ ..+|..+...|...|++++|...++++++++|+++.+...+.......
T Consensus 213 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 213 ---GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 22 246677778888899999999999999999999887776666555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-13 Score=134.24 Aligned_cols=332 Identities=8% Similarity=-0.043 Sum_probs=215.3
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHC-----C-CCC-ChhhHHHHHHHhh--cCCCchHHHHHHHHHHHhCCCCC
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQ-----G-VEI-NSVTMLCLLPICV--DPGYLWLGMCCHCICVKFGLDLD 81 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~ 81 (516)
..++|+.+...|...|++++|...|++..+. + ..+ ...++.....++. ..+++++|+..|+.+++.. +.+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4678999999999999999999999887642 1 112 2345555544443 3467899999999999886 555
Q ss_pred hhHHHHHHHHH---HHcCCHHHHHHHHcccCC---CCchHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 043362 82 FSVGNCLMTMY---VKCGSVDYGRKLFDQVPE---KGLITWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVTF 151 (516)
Q Consensus 82 ~~~~~~ll~~~---~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 151 (516)
+..+..+...+ ...++.++|.+.|++..+ .+..++..+...+.. .|++++|.+.+++..... +.+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 66666666554 455777788888776543 234566666555544 467889999999987753 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC-------------------CCHHHHHHHHhcCC--
Q 043362 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC-------------------GNLKKARAIFDGMP-- 210 (516)
Q Consensus 152 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-------------------g~~~~A~~~~~~m~-- 210 (516)
..+...+...|++++|...+.++.+.. +.+..++..+...|... +.++.|...|++..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 899999999999999999999999874 44567777777766432 23556777776553
Q ss_pred -CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCChHHHHHHHHHhHHhcCCCCCHH
Q 043362 211 -RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFVSVLS-ACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286 (516)
Q Consensus 211 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 286 (516)
..+..+|..+...|...|++++|+..|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH
Confidence 3456788899999999999999999999998864433321 2222222 34578999999999999885 455543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
...... +.+.++++... ..| +..+|..|...|...|++++|+..|+++++++|.++.+...+
T Consensus 407 ~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 322222 23333443332 234 678999999999999999999999999999998887665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-12 Score=120.49 Aligned_cols=225 Identities=13% Similarity=-0.013 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFLNNA 188 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 188 (516)
..++..+...|...|++++|+..|++..+. -+..++..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 345555666666666666666666666552 234455555556666 666666666666666654 4555556
Q ss_pred HHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 189 LINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAIIGGYGI----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 189 li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 6666666 6666666666655432 245556666666666 667777777777766654 344555555566
Q ss_pred hc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 043362 260 SH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALELIESMLVEPDGAVWGALLGACKI-- 329 (516)
Q Consensus 260 ~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-- 329 (516)
.. .+++++|..+|++..+. .++..+..+...|.. .+++++|.+.+++.....+...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 55 67777777777766643 245556666666666 67777777777665422235566666666666
Q ss_pred --cCCHHHHHHHHHHHhhcCCCC
Q 043362 330 --HKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 330 --~g~~~~A~~~~~~~~~~~p~~ 350 (516)
.+++++|...++++.+.+|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 677777777777777766654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=124.79 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 193 (516)
.+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 445555555666666666666666655431 2234444445555555555555555555544432
Q ss_pred HhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043362 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 273 (516)
..+..+|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++
T Consensus 88 -----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 88 -----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred -----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1234445555555556666666666666655542 2345556666666666777777777776
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 274 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++.+. .+.+...+..+...|.+.|++++|.+.++++. ..| +..+|..+...+...|++++|...++++.+..|+++
T Consensus 150 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 150 RAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 66643 12345666677777777777777777777654 223 467777788888888888888888888888888877
Q ss_pred cchHHHhhHHH
Q 043362 352 GYYVLLSNIYS 362 (516)
Q Consensus 352 ~~~~~l~~~~~ 362 (516)
..+..+..+..
T Consensus 228 ~~~~~~~~l~~ 238 (243)
T 2q7f_A 228 LALHAKKLLGH 238 (243)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHHh
Confidence 66666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-13 Score=120.61 Aligned_cols=206 Identities=15% Similarity=0.039 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~----- 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN----- 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH-----
Confidence 3566666777777777777777777766542 2345555555666666666666666666655542 12333344
Q ss_pred HHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHH
Q 043362 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
.+...|...|++++|.+.|+++...+..| +...+..+...+...|++++|..+
T Consensus 110 --------------------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 110 --------------------------NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------------HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444445555555555444422223 233445555555666666666666
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
+.++.+. .+.+...+..+...|...|++++|...++++. .. .+...+..+...+...|+.++|...++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6665543 12235566666666777777777777776654 22 34666666777777777777777777777777777
Q ss_pred Cccc
Q 043362 350 NTGY 353 (516)
Q Consensus 350 ~~~~ 353 (516)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=116.42 Aligned_cols=199 Identities=12% Similarity=-0.057 Sum_probs=104.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhc-CC
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIH-GH 229 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~ 229 (516)
+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...|... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333333344444444443333321 1223333344444444444444444443332 12344455555555555 66
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043362 230 GEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 308 (516)
+++|...|+++.+.+..|+ ...+..+...+...|++++|...+..+.+. .+.+...+..+...|.+.|++++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666555222232 345555566666666666666666666543 1223555666666666667777776666
Q ss_pred HhcC-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 309 ESML-V-E-PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 309 ~~m~-~-~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
+++. . . .+...+..+...+...|+.+.|...++.+.+..|+++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6654 2 2 34555655666666777777777777777767776654433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-12 Score=119.02 Aligned_cols=224 Identities=15% Similarity=0.030 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhcCCC-CCHhHHHHHH
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR----CGNLKKARAIFDGMPR-KTVVSWTAII 221 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 221 (516)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .|++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55677788888999999999999999999843 56788889999999 9999999999988653 3778899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 222 GGYGI----HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 222 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888899998 99999999999999864 3 6777888889
Q ss_pred HHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH--
Q 043362 294 LLGR----AGQLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE-- 363 (516)
Q Consensus 294 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 363 (516)
.|.. .+++++|...+++.....+...+..+...|.. .+++++|...++++.+.+| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987634567888889999999 9999999999999999876 5688899999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 043362 364 --ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 364 --~g~~~~a~~~~~~m~~~~~ 382 (516)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=117.89 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=174.0
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 256 (516)
+.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3456778889999999999999999998765 3467889999999999999999999999998863 44677888999
Q ss_pred HHHhcc-CChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 257 SACSHA-GLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 257 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
..+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++. ..| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999986 233443 6788899999999999999999999876 334 58889999999999999
Q ss_pred HHHHHHHHHHHhhcCC-CCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 333 VELAELAFGKVIKLEP-MNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+++|...++++.+..| ++...+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 89888999999999999999999999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-13 Score=124.17 Aligned_cols=242 Identities=12% Similarity=-0.053 Sum_probs=175.4
Q ss_pred HHhCCCchHHHHHHHHhHHCCCC---CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 043362 22 YVLNSLVSEAVSLFGKMREQGVE---INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV 98 (516)
Q Consensus 22 ~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 98 (516)
+...|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999876321 235677888888999999999999999999886 56788899999999999999
Q ss_pred HHHHHHHcccCC---CCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043362 99 DYGRKLFDQVPE---KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175 (516)
Q Consensus 99 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 175 (516)
++|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+....
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999988754 34678999999999999999999999998874 4554445555556677789999999998877
Q ss_pred HcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043362 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248 (516)
Q Consensus 176 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 248 (516)
... +++...+. ++..+...++.++|.+.++.....+ ..+|..+...|...|++++|...|++.... .|+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 753 33444443 6777777888888888887766542 356666777777777777777777777663 332
Q ss_pred HHHHHHHHHHHhccCChHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 112233444555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-13 Score=120.95 Aligned_cols=197 Identities=10% Similarity=-0.002 Sum_probs=168.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566777777888888888888877654 3366788888889999999999999999988763 34677888899999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 260 SHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
...|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++. ..| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 23455 56778889999999999999999999876 334 588899999999999999999
Q ss_pred HHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
...++++.+..|++...+..++.+|...|++++|.++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-13 Score=129.07 Aligned_cols=244 Identities=10% Similarity=0.072 Sum_probs=199.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-HSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
.+|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...++++++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 578888889999999999999999988753 3356788888889999996 999999999999875 4478889999999
Q ss_pred HHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHH
Q 043362 193 YARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-AGLTDKG 268 (516)
Q Consensus 193 y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a 268 (516)
|.+.|++++|...|+++. ..+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999998875 3477899999999999999999999999999863 3357788888888888 6665777
Q ss_pred -----HHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC--------
Q 043362 269 -----LEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAG--QLNEALELIESMLVEP-DGAVWGALLGACKIHK-------- 331 (516)
Q Consensus 269 -----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g-------- 331 (516)
+..+.+..+. .| +...|..+..+|...| ++++|.+.+.++...| +...+..+...|...|
T Consensus 255 ~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4788888754 44 5678888888888888 6889999888875445 4788888888887764
Q ss_pred -CHHHHHHHHHHH-hhcCCCCccchHHHhhHHHH
Q 043362 332 -NVELAELAFGKV-IKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 332 -~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 363 (516)
..++|+.+++++ .+++|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888877776553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-12 Score=118.65 Aligned_cols=228 Identities=7% Similarity=-0.042 Sum_probs=181.5
Q ss_pred hhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCC--CCc----hHHHHHH
Q 043362 47 SVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGL----ITWNAMI 120 (516)
Q Consensus 47 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 120 (516)
...+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566778889999999999999999875 55666889999999999999999999988755 222 3589999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH-HHHHhCCCH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI-NMYARCGNL 199 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~ 199 (516)
..|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 3456788999999999999999999999998873 45677788888 5555 4699
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCChH
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGH---GEVAVQLFDEMLKSG-IRPDG------TAFVSVLSACSHAGLTD 266 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 266 (516)
++|.+.|++.. ..+...|..+...+...|+ +++|...|++..+.. ..|+. .++..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999875 3356788888888888888 888999999887631 12331 45666777777778888
Q ss_pred HHHHHHHHhHHh
Q 043362 267 KGLEYFYGMKNK 278 (516)
Q Consensus 267 ~a~~~~~~~~~~ 278 (516)
+|...++++.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888777754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-13 Score=132.66 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=231.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCc---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL---WLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
+...+.+.|++++|+.+|++..+.| .|+ .+..+...+...|+. ++|...++...+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YSE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CCT--GGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788999999999999998876 333 334444555556777 8999999988754 55556667775555
Q ss_pred cC-----CHHHHHHHHcccCCCC-chHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 95 CG-----SVDYGRKLFDQVPEKG-LITWNAMISGYAQNGLATH---VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 95 ~g-----~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
.| ++++|...|++..+++ ..++..|...|...+...+ +.+.+.+....|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 55 7889999998876654 5678888888888765443 4555555554442 345556666777777554
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC---CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc----CCHHHHHH
Q 043362 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCG---NLKKARAIFDGMPR---KTVVSWTAIIGGYGIH----GHGEVAVQ 235 (516)
Q Consensus 166 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~ 235 (516)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44444333333222234448888999999999 99999999987653 3444446677777554 68999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--hccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSA-C--SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG-----QLNEALEL 307 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 307 (516)
.|++.. .| +...+..+... + ...+++++|..+|.+..+. | ++..+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 33 44555556555 3 5689999999999999864 4 6778888888887 55 99999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH----cCChhHHHHHHHHHHh
Q 043362 308 IESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE----ARNLDGIMRVRMMMRE 379 (516)
Q Consensus 308 ~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 379 (516)
|++.. ..+...+..|...|.. ..+.++|...|++..+.+ ++.....|+.+|.. ..+.++|...++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99998 5578888888877766 449999999999988754 45678889998875 4589999999999887
Q ss_pred CCC
Q 043362 380 RRL 382 (516)
Q Consensus 380 ~~~ 382 (516)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=122.25 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=154.5
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 181 SNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 181 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445666777778888888888888877642 367788888999999999999999999988863 346788888999
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~ 335 (516)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++. ..| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999875 23467889999999999999999999999876 334 68889999999999999999
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...++++.+..|++..++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-13 Score=133.01 Aligned_cols=311 Identities=12% Similarity=0.055 Sum_probs=221.0
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH---HHHHHHHcccCCCCchHHHHHHHHHHHcC--
Q 043362 53 LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV---DYGRKLFDQVPEKGLITWNAMISGYAQNG-- 127 (516)
Q Consensus 53 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 127 (516)
+...+.+.|++++|.++++...+.| +...+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455667799999999999999887 334455677777788888 99999999988777778888887666665
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC----
Q 043362 128 ---LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS---VGLEVEQQIQANGFGSNPFLNNALINMYARCG---- 197 (516)
Q Consensus 128 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 197 (516)
++++|+..|++..+.|.. + .+..+...|...+..+ .+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 788999999999987643 3 5566666666655433 3455555555555 3556777888888877
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CChHHHHH
Q 043362 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHG---HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA----GLTDKGLE 270 (516)
Q Consensus 198 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~ 270 (516)
+.+++..+++.....++.++..+...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 5666777787777777789999999999999 9999999999999987 45556556677777655 79999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDL-L--GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK-----NVELAELAFGK 342 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~ 342 (516)
+|++.. +-++..+..|..+ | ...|++++|.+.|++.....+...+..|...|. .| ++++|...|++
T Consensus 239 ~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 239 LLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 999886 2356677777777 4 468999999999998864457888888888877 55 99999999999
Q ss_pred HhhcCCCCccchHHHhhHHHH----cCChhHHHHHHHHHHhCCC
Q 043362 343 VIKLEPMNTGYYVLLSNIYSE----ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 343 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 382 (516)
.. |.++.++..|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 313 Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 313 AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 88 7888899999999987 3489999999999887664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=134.34 Aligned_cols=195 Identities=14% Similarity=0.028 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCC---------CHhHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMPRK---------TVVSWTAIIGGYGIHGH-----------------GEVAVQLFD 238 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 238 (516)
++..+...|...|++++|.+.|++..+. ...++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3444444444444444444444433210 12345555555555666 666666655
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 239 EMLKS----GIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 239 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+..+. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54331 1111 1235566666777777777777777776543111111 2256677777888888888887777
Q ss_pred hcC-C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------CccchHHHhhHHHHcCChhHHHHHHH
Q 043362 310 SML-V---EP----DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM------NTGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 310 ~m~-~---~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
+.. . .. ...++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 654 0 11 1456677777888888888888888888775432 23467788888888889888888888
Q ss_pred HHHh
Q 043362 376 MMRE 379 (516)
Q Consensus 376 ~m~~ 379 (516)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=132.01 Aligned_cols=262 Identities=16% Similarity=0.065 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CchHHHH
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFG-SNPFLNN 187 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~ 187 (516)
......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++++.+. +.. ....++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333444444444444444444444321 111 123334444444444444444444443321 101 1123444
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGH--------------------GEVAVQLFD 238 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 238 (516)
.+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 455555555555555555444321 11 2345555556666666 666666665
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 239 EMLKS----GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIE 309 (516)
Q Consensus 239 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 309 (516)
+.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 54331 11111 235566666777777777777777766543211122 2356667777777788877777776
Q ss_pred hcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchHHHhhHHHHcCChhHHHHHHH
Q 043362 310 SML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYVLLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 310 ~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 375 (516)
+.. ..++ ..++..+...+...|++++|...++++.++.+.. ..++..++.+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 654 1112 4566677777788888888888888777654322 4467777888888888888888887
Q ss_pred HHHh
Q 043362 376 MMRE 379 (516)
Q Consensus 376 ~m~~ 379 (516)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=127.83 Aligned_cols=257 Identities=11% Similarity=-0.028 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCC---------CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEK---------GLITWNAMISGYAQNGLATHVLELYREMKSLGV-CPD----AV 149 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~ 149 (516)
++..+...|...|++++|...|++..+. ...+|..+...|...|++++|+..+++..+... .++ ..
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444455555555555555554443110 023555666666666777777666666543200 011 23
Q ss_pred HHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 043362 150 TFVGVLSSCAHLGA--------------------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209 (516)
Q Consensus 150 t~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 209 (516)
++..+...+...|+ +++|...+....+. +...
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~ 180 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTAL 180 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHT
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhc
Confidence 45555556666666 55555555444331 1111
Q ss_pred CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 043362 210 PRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282 (516)
Q Consensus 210 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 282 (516)
..+ ...++..+...|...|++++|...|++..+... .++ ..++..+...+...|++++|...+++..+...-.
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 110 123455566666666666666666666543210 111 2356666777777788888877777765431111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---
Q 043362 283 PG----PEHYTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLE--- 347 (516)
Q Consensus 283 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 347 (516)
++ ..++..+...|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++.++.
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 11 4567777888888888888888887764 1122 5677788888999999999999999988753
Q ss_pred ---CCCccchHHHhhHHHHcCChh
Q 043362 348 ---PMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 348 ---p~~~~~~~~l~~~~~~~g~~~ 368 (516)
+....++..++.+|...|+..
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 341 GDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCcchhHHHHHHHHHHHHhhHhH
Confidence 223456677777887777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-13 Score=125.72 Aligned_cols=262 Identities=16% Similarity=0.066 Sum_probs=164.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CchHHHHH
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFG-SNPFLNNA 188 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~ 188 (516)
.....+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445555555566655555555432 111 234445555555556666665555554331 111 11344555
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 043362 189 LINMYARCGNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGH--------------------GEVAVQLFDE 239 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 239 (516)
+...|...|++++|.+.|++..+ .+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666666666666666655421 11 2356666666777777 7777777766
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 240 MLKS----GIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 240 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 1111 1335667777788888888888888877643211112 23677788888889999999888887
Q ss_pred cC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 311 ML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 311 m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.. ..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 64 1122 5567778888999999999999999988764322 34677899999999999999999998
Q ss_pred HHhC
Q 043362 377 MRER 380 (516)
Q Consensus 377 m~~~ 380 (516)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-12 Score=125.97 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC-HHHHHHHHhcCC---CCCHhHHHHHHHH
Q 043362 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN-LKKARAIFDGMP---RKTVVSWTAIIGG 223 (516)
Q Consensus 148 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~~ 223 (516)
...|..+..++...|++++|...++++++.. +.+..+|+.+..+|.+.|+ +++|.+.|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467777888899999999999999999975 4568899999999999997 999999999876 3478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHh-cCCH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGR-AGQL 301 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~ 301 (516)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .| +...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999863 346788999999999999999999999999965 44 67889999999999 6665
Q ss_pred HHH-----HHHHHhcC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC-------
Q 043362 302 NEA-----LELIESML-VEP-DGAVWGALLGACKIHK--NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR------- 365 (516)
Q Consensus 302 ~~A-----~~~~~~m~-~~p-~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 365 (516)
++| ++.+++.. ..| +...|..+...+...| ++++|...++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 47777665 456 5889999999998888 689999999998 889999999999999999875
Q ss_pred --ChhHHHHHHHHH-Hh
Q 043362 366 --NLDGIMRVRMMM-RE 379 (516)
Q Consensus 366 --~~~~a~~~~~~m-~~ 379 (516)
..++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=107.95 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=119.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 292 (516)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777777777777777776642 234566677777777777777777777777653 223455666667
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 293 DLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
..+...+++++|.+.+.+.. ..| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77777788888777777655 334 4677777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=127.83 Aligned_cols=270 Identities=12% Similarity=0.012 Sum_probs=164.2
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHcccCCC---------CchHH
Q 043362 50 MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDF----SVGNCLMTMYVKCGSVDYGRKLFDQVPEK---------GLITW 116 (516)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---------~~~~~ 116 (516)
+..+...+...|++++|...++.+++.. +.+. .++..+...|...|++++|...|++..+. ...+|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3444556667788888888888777764 2233 35667777777777777777777665321 12456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSL----GVCP-DAVTFVGVLSSCAHLGA-----------------HSVGLEVEQQI 174 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~~~~~~ 174 (516)
..+...|...|++++|+..|++..+. +-.| ...++..+...+...|+ +++|...+.+.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66777777777777777777665442 1011 12344555555556666 45555444443
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC---
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD--- 248 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 248 (516)
.+. +.....+ ...+|..+...|...|++++|+..|++..+... .++
T Consensus 210 l~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 210 LKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 321 0000000 123455556666666666666666666544210 011
Q ss_pred -HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---CCC---
Q 043362 249 -GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----GPEHYTCMVDLLGRAGQLNEALELIESML-V---EPD--- 316 (516)
Q Consensus 249 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~--- 316 (516)
..++..+...+...|++++|...+++......-.. ....+..+...|...|++++|...+++.. . .++
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 22566677777777788777777777664311111 14567778888888888888888887764 0 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 317 -GAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 317 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
..++..+...+...|++++|...++++.++.+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 45677788889999999999999999988664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=131.35 Aligned_cols=208 Identities=9% Similarity=-0.020 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCH-HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL-KKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+.+.+.+....... +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 33555666666666666776 66666666553 235667888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 043362 241 LKSGIRPDGTAFVSVLSACSHA---------GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA--------GQLNE 303 (516)
Q Consensus 241 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 303 (516)
.+. .|+...+..+...+... |++++|...+++..+. -+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57777888888888888 9999999999998864 123577888889999888 89999
Q ss_pred HHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 304 ALELIESML-VEP----DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 304 A~~~~~~m~-~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
|.+.|++.. ..| +...|..+...|...|++++|...++++++++|+++.++..+..++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999876 355 68899999999999999999999999999999999999999999999999999998765433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-12 Score=120.81 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIESML----VEPD----GA 318 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~ 318 (516)
++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++.. ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4445555555556666665555554432111111 3455666666777777777776666553 0011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566677777888888888888888777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-11 Score=111.76 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043362 130 THVLELYREMKSLGVCPDAVTFVGVLSSCA-------HLGAH-------SVGLEVEQQIQANGFGSNPFLNNALINMYAR 195 (516)
Q Consensus 130 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 195 (516)
++|+.+|++..... +-+...|......+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 335556666665554 34775 7888888888873224456688888888888
Q ss_pred CCCHHHHHHHHhcCCC--C-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCChHHHHH
Q 043362 196 CGNLKKARAIFDGMPR--K-TVV-SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC-SHAGLTDKGLE 270 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 270 (516)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887653 2 333 78888888888999999999999988753 23444444333332 23699999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV----EP--DGAVWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
+|++..+.. +-+...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988652 23678888899999999999999999988752 34 36788888888889999999999999999
Q ss_pred hcCCCCcc
Q 043362 345 KLEPMNTG 352 (516)
Q Consensus 345 ~~~p~~~~ 352 (516)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-12 Score=108.30 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 258 (516)
+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55677777777777788888877777654 2366778888888888888888888888887753 3345666777778
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A 336 (516)
+...++++.+...+...... .+.+...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999998888764 23357788888999999999999999998876 445 588899999999999999999
Q ss_pred HHHHHHHhhcCCCCc
Q 043362 337 ELAFGKVIKLEPMNT 351 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~ 351 (516)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=122.41 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-C
Q 043362 114 ITWNAMISGYAQNGLATHVLELYREMKSL-------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------G-F 179 (516)
Q Consensus 114 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g-~ 179 (516)
.+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46677777777777777777777777652 12223445666777777778888888777777653 1 1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----- 243 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 243 (516)
+....++..+...|...|++++|.+.|++..+ + ...++..+...|...|++++|++.|++....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22355667777777788888877777765431 1 2334556666666666666666666666542
Q ss_pred -CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 244 -GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 244 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+..|+ ..++..+...+...|++++|..+++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555566666666666666666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=120.55 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CC-CCCHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GL-QPGPE 286 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~ 286 (516)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+.+..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 444555555555555555555555443100 011 1245555556666666666666666555310 11 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCccchHH
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML------VEPD-GAVWGALLGACKIHKN---VELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
++..+...|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ .++|...+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 45566666666666666666665543 0111 1223445555666666 55555555554 222333345666
Q ss_pred HhhHHHHcCChhHHHHHHHHHHh
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
++.+|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777766653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-11 Score=116.11 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=161.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CchHHHH
Q 043362 119 MISGYAQNGLATHVLELYREMKSL----GVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFG----SNPFLNN 187 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~----~~~~~~~ 187 (516)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777777777777776553 1111 2345666677777777777777777776652 111 1134667
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 043362 188 ALINMYARCGNLKKARAIFDGMPR-----KT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GI-RPDGTAFV 253 (516)
Q Consensus 188 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 253 (516)
.+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888887776541 11 246777888899999999999999887762 33 33356788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGRAGQ---LNEALELIESMLVEPD-GAVWGALLGA 326 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 326 (516)
.+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888999999999999999887753211112 2335667788888898 8999999998864343 4567778889
Q ss_pred HHhcCCHHHHHHHHHHHhhcC
Q 043362 327 CKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~ 347 (516)
|...|++++|...++++.++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=109.04 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=97.0
Q ss_pred HHHHHHHcccCC---C-CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhcCChHHHHHHHH
Q 043362 99 DYGRKLFDQVPE---K-GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA-V-TFVGVLSSCAHLGAHSVGLEVEQ 172 (516)
Q Consensus 99 ~~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~~~~ 172 (516)
++|..+|++..+ | +...|..++..+.+.|++++|.++|++..+. .|+. . .|..+...+.+.|++++|+.+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554432 1 1235555555555555555555555555542 3322 1 45555555555566666666666
Q ss_pred HHHHcCCCCchHHHHHHHHHHH-hCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 043362 173 QIQANGFGSNPFLNNALINMYA-RCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRP 247 (516)
Q Consensus 173 ~~~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 247 (516)
++++.. +.+..+|........ ..|++++|.++|++.. ..+...|..++..+.+.|++++|..+|++..... .+|
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 555543 223333433333322 2466666666666553 2245666666666666677777777777766642 344
Q ss_pred --CHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 248 --DGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 248 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
....|..++......|+.+.|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2445666666666677777777777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-09 Score=106.77 Aligned_cols=259 Identities=12% Similarity=-0.026 Sum_probs=143.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----hHHHHHHHH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSN----PFLNNALIN 191 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~ 191 (516)
..+...|++++|...+++.....-..+.. ++..+...+...|++++|...+++..+... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555555555555554432111111 233334445555666666655555544210 001 122344555
Q ss_pred HHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 043362 192 MYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR--P--DGTAFVSVL 256 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 256 (516)
.|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666666554321 1 1234455566667777777777777766553211 1 124555666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHHH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-----CMVDLLGRAGQLNEALELIESML-VEPD-----GAVWGALLG 325 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~ 325 (516)
..+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 667777777777777777654311111111111 23344667788888888877765 1111 234556667
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC------CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPM------NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+...|++++|...++++.+..+. ....+..++.+|...|+.++|...++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888888888888877654321 112566677788888888888888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-11 Score=125.17 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=122.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTC 290 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 290 (516)
+..+|+.+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...|++..+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777777777777777777777764 33 3566777777777788888888887777753 34 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChh
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 368 (516)
+..+|.+.|++++|.+.|++.. ..| +...|..+...+...|++++|+..|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888887765 445 47778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 043362 369 GIMRVRMMMRE 379 (516)
Q Consensus 369 ~a~~~~~~m~~ 379 (516)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=117.10 Aligned_cols=246 Identities=13% Similarity=0.035 Sum_probs=151.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCC--------CC---chHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPE--------KG---LITWNAMISGYAQNGLATHVLELYREMKSL------GV 144 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 144 (516)
..++..+...|...|++++|..+|+++.+ .+ ..+|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44566677777777777777777766543 12 256777777888888888888888777653 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----
Q 043362 145 CP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------GF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRK---- 212 (516)
Q Consensus 145 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---- 212 (516)
.| ...++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3456777888888889999999888888764 22 233567888999999999999999998876421
Q ss_pred -------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH
Q 043362 213 -------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285 (516)
Q Consensus 213 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 285 (516)
...++..+...|...|++++|...|+++.+.. |+. .+..+- ....... ...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MHA 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HHH
Confidence 34578889999999999999999999987631 100 000000 0000000 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112222333344455555555555544 223 3566777777788888888888888887776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-10 Score=98.39 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
..+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456667777777888888888877653 255667777777777777777777777776642 334556666666777
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
..|++++|.++++.+.+. .+.+...+..+...|...|++++|.+.++++. ..| +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776653 22345566666666666666666666666554 222 45566666666666666666666
Q ss_pred HHHHHhhcCCCCc
Q 043362 339 AFGKVIKLEPMNT 351 (516)
Q Consensus 339 ~~~~~~~~~p~~~ 351 (516)
.++++.+..|++.
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 6666666665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=100.86 Aligned_cols=163 Identities=14% Similarity=0.009 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 467778888999999999999999987642 346778888999999999999999999999865 23467888999999
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHH
Q 043362 295 LGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 372 (516)
|...|++++|.+.++++. ...+...|..+...+...|++++|...++++.+..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999876 334688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 043362 373 VRMMMRER 380 (516)
Q Consensus 373 ~~~~m~~~ 380 (516)
.++...+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=113.35 Aligned_cols=220 Identities=12% Similarity=0.032 Sum_probs=121.0
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CC---CchHHHHHHHHHHHhCCCHHHHHHHHhcCC-------CC---CHhHHHHHHH
Q 043362 158 CAHLGAHSVGLEVEQQIQANG--FG---SNPFLNNALINMYARCGNLKKARAIFDGMP-------RK---TVVSWTAIIG 222 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~---~~~~~~~li~ 222 (516)
+...|++++|...+.++.+.. .+ ....++..+...|...|+++.|...+++.. .. ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445555666666555555421 01 113345555556666666655555554432 10 1235556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCCCHHHHHHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKS----GIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQPGPEHYTCMVDL 294 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 294 (516)
.|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+.+..+.. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 666666666666666665441 1111 12345566666777777777777776665411 111124556666777
Q ss_pred HHhcCCHHHHHHHHHhcC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 295 LGRAGQLNEALELIESML------VEPD-GAVWGALLGACKIHKN---VELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~------~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
|.+.|++++|...+++.. ..|. ...+..+...+...++ +.+|...+++.. ..|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHC
Confidence 777777777777776653 1122 2334444455566666 666666665521 1233334566777777777
Q ss_pred CChhHHHHHHHHHH
Q 043362 365 RNLDGIMRVRMMMR 378 (516)
Q Consensus 365 g~~~~a~~~~~~m~ 378 (516)
|++++|...+++..
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88777777777664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-09 Score=109.76 Aligned_cols=366 Identities=11% Similarity=0.013 Sum_probs=200.6
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCC---chHHHHHHHHHHHhC-CCCChhHH
Q 043362 10 HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY---LWLGMCCHCICVKFG-LDLDFSVG 85 (516)
Q Consensus 10 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 85 (516)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+.++|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 48889999999999999999999999999876 34555667777777677777 899999999888764 13788888
Q ss_pred HHHHHHHHHcCCH--------HHHHHHHcccC------CCC-chHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 043362 86 NCLMTMYVKCGSV--------DYGRKLFDQVP------EKG-LITWNAMISGYA---------QNGLATHVLELYREMKS 141 (516)
Q Consensus 86 ~~ll~~~~~~g~~--------~~A~~~f~~~~------~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 141 (516)
...+....+.++. +...++|+... .++ ...|...+.-.. .+++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665543 33446676522 222 246766665432 23446677777777764
Q ss_pred CCCCCC--HHHHH---HHHHHH----------HhcCChHHHHH-------------------------------------
Q 043362 142 LGVCPD--AVTFV---GVLSSC----------AHLGAHSVGLE------------------------------------- 169 (516)
Q Consensus 142 ~g~~p~--~~t~~---~ll~~~----------~~~g~~~~a~~------------------------------------- 169 (516)
. +.. ..+|. ..-... .....++.|+.
T Consensus 223 i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 223 Q--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp S--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred C--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 2 221 11221 111110 00011122222
Q ss_pred ------------------------------HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH-HHHhcCC---CCCHh
Q 043362 170 ------------------------------VEQQIQANGFGSNPFLNNALINMYARCGNLKKAR-AIFDGMP---RKTVV 215 (516)
Q Consensus 170 ------------------------------~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~---~~~~~ 215 (516)
+|++++.. ++.+..+|-..+..+...|+.++|. ++|++.. ..+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 23333322 1223334444444444555555554 5555443 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHhccCChHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSG---------IRPD------------GTAFVSVLSACSHAGLTDKGLEYFYG 274 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~ 274 (516)
.|-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666666655421 0121 12355555555556666666666666
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--
Q 043362 275 MKNKYGLQPGPEHYTCMVDLLGRAG-QLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-- 349 (516)
Q Consensus 275 ~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-- 349 (516)
+.+.. ..+....|...+.+-.+.| +.+.|.++|+... ...+...|...+......|+.+.|..+|++++...|+
T Consensus 460 A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 65420 1112233333333333333 3666666666554 2224555555565555666666666666666665552
Q ss_pred -CccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 350 -NTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 350 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334555555555666666666666666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=116.26 Aligned_cols=207 Identities=13% Similarity=0.008 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHh
Q 043362 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 207 (516)
+++++..+.+.... .+.+...+..+..++...|++ ++|...++++++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444455444332 122445555555556666666 66666666665543 2345556666666666666666666665
Q ss_pred cCC--CCCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CChHHH
Q 043362 208 GMP--RKTVVSWTAIIGGYGIH---------GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA--------GLTDKG 268 (516)
Q Consensus 208 ~m~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a 268 (516)
+.. .|+...|..+...|... |++++|+..|++..+.. +.+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 543 23445555566666666 66666666666666642 22455566666666666 667777
Q ss_pred HHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 269 LEYFYGMKNKYGLQP----GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFG 341 (516)
Q Consensus 269 ~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~ 341 (516)
...|++..+. .| +...|..+...|...|++++|.+.|++.. ..| +...|..+...+...|++++|...+.
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777666643 33 55666667777777777777777776654 334 35566666666666666666665443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-09 Score=105.86 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=160.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---C-CchHHH
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGV-CPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GF---G-SNPFLN 186 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~---~-~~~~~~ 186 (516)
.....+...|++++|+..|++..+.-. .+| ..++..+..++...|+++.|...+.+..+. .. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677788888888777764310 122 345666777777788888888777776652 11 1 124566
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 043362 187 NALINMYARCGNLKKARAIFDGMPR-----K----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GIRPDGTAFV 253 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~ 253 (516)
+.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|+..|++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 7788888888888888887766532 1 2346777888888999999999999887761 2223366788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGRAGQ---LNEALELIESMLVEPD-GAVWGALLGA 326 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 326 (516)
.+...+.+.|++++|...+++..+...-.++ ...+..+...|...|+ +++|...+++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999998865322222 3445666667777888 8899999988653333 4566678888
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 043362 327 CKIHKNVELAELAFGKVIKL 346 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~ 346 (516)
|...|++++|...++++.+.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-10 Score=101.49 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIG 222 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 222 (516)
.|...+......+...|++++|...++.+++...+++...+..+..+|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888888999999999999999999997654677777779999999999999999998765 235678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 043362 223 GYGIHGHGEVAVQLFDEMLKSGIRPDG-------TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMV 292 (516)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 292 (516)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|+++.+ +.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999988853 2234 4577777888899999999999999884 4565 56677777
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 293 DLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
..|...|+. .++++. ...+...+..+. ....+.+++|...+++++++.|+++.+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777665543 233322 123444454443 3345668999999999999999998666655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-09 Score=102.69 Aligned_cols=224 Identities=8% Similarity=-0.115 Sum_probs=130.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChh----hHHHHHHHhhcCCCchHHHHHHHHHHHhCC-CCC----hhHHHHH
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSV----TMLCLLPICVDPGYLWLGMCCHCICVKFGL-DLD----FSVGNCL 88 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l 88 (516)
....+...|++++|...+++.....-..+.. ++..+...+...|+++.|.+.++..++... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667888999999988887753212221 344455566677888888888877665321 111 1234566
Q ss_pred HHHHHHcCCHHHHHHHHcccCC-------C---C-chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CHHHHHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPE-------K---G-LITWNAMISGYAQNGLATHVLELYREMKSLGVC--P--DAVTFVG 153 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~-------~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 153 (516)
...|...|++++|...+++..+ + . ..++..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6777777888777777765431 1 1 134555666777777777777777776543111 1 1234556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-hHHHH-----HHHHHHHhCCCHHHHHHHHhcCCCCC-------HhHHHHH
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSN-PFLNN-----ALINMYARCGNLKKARAIFDGMPRKT-------VVSWTAI 220 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~l 220 (516)
+...+...|++++|...+++.......++ ...+. .++..+...|++++|...+++....+ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66667777777777777777655311111 11111 23344666777777777776655321 1134455
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEML 241 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~ 241 (516)
...+...|++++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-10 Score=100.43 Aligned_cols=187 Identities=12% Similarity=-0.049 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCC---C-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMP---R-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVL 256 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 256 (516)
|+..+..+...|.+.|++++|.+.|++.. . ++...|..+..++...|++++|+..|++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 44555666666666666666666666543 1 45555555666666666666666666666653 23 334555666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP-GP-------EHYTCMVDLLGRAGQLNEALELIESML-VEPD---GAVWGALL 324 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll 324 (516)
..+...|++++|...+++..+. .| +. ..|..+...+...|++++|.+.|++.. ..|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666643 22 22 345555566666666666666666654 3343 34444444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..+.. .+...++++..+.+.+...|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 44432 23344455555554443333222 233445568999999888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-10 Score=104.76 Aligned_cols=151 Identities=10% Similarity=-0.010 Sum_probs=83.0
Q ss_pred cCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchHHHHHHHH
Q 043362 126 NGLATHVLELYREMKS-------LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------GF-GSNPFLNNALIN 191 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~ 191 (516)
.|++++|+.+|++..+ ...+....++..+...+...|++++|...+.++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555433 111223456667777777778888887777777653 11 223456667777
Q ss_pred HHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHH
Q 043362 192 MYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS------GIRPD-GTAFV 253 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~ 253 (516)
.|...|++++|.+.|++..+ + ...+|..+...|...|++++|...|++..+. +..|+ ..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777777665421 1 2334555555555666666666666555442 11111 23444
Q ss_pred HHHHHHhccCChHHHHHHHHHhH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
.+...+...|++++|..+++++.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=102.45 Aligned_cols=217 Identities=8% Similarity=0.006 Sum_probs=120.8
Q ss_pred CHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 043362 97 SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL----GVCPD-AVTFVGVLSSCAHLGAHSVGLEVE 171 (516)
Q Consensus 97 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 171 (516)
++++|...|++. ...|...|++++|++.|.+..+. |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776553 66788888888888888776542 22222 346667777777777777777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC-
Q 043362 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH-GHGEVAVQLFDEMLKSGIR-PD- 248 (516)
Q Consensus 172 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~- 248 (516)
++.++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 766552 1112222221 12344555556664 6666666666665442100 01
Q ss_pred ---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH--
Q 043362 249 ---GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-----EHYTCMVDLLGRAGQLNEALELIESML-VEPDG-- 317 (516)
Q Consensus 249 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-- 317 (516)
..++..+...+...|++++|...|++..+...-.+.. ..|..+...+...|++++|...+++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2345566666666777777777776666431111111 134556666667777777777776654 23331
Q ss_pred ----HHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCC
Q 043362 318 ----AVWGALLGACK--IHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 318 ----~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
..+..++.++. ..+++++|+..|+++..++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 12333444443 3455677777776666666543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.6e-10 Score=115.86 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSA 258 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 258 (516)
...++.|...|.+.|++++|.+.|++.. ..+..+|+.+..+|.+.|++++|++.|++..+. .| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4566666666666666666666666553 235566777777777777777777777777764 33 35677777777
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043362 259 CSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVEL 335 (516)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~ 335 (516)
+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888777753 34 46677888888888888888888887765 455 47778888888888888888
Q ss_pred HHHHHHHHhhcC
Q 043362 336 AELAFGKVIKLE 347 (516)
Q Consensus 336 A~~~~~~~~~~~ 347 (516)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888877644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-08 Score=94.85 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=143.6
Q ss_pred hHHHHHHHHhHHCCCCCChhhHHHHHHHhhcC-C-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHc
Q 043362 29 SEAVSLFGKMREQGVEINSVTMLCLLPICVDP-G-YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD 106 (516)
Q Consensus 29 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~ 106 (516)
.+|.+++.+..+. .++....| .++ ... + ++++|...+..+ ...|...|++++|...|+
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 3567777777665 23222223 333 221 2 478888777765 456788999999999988
Q ss_pred ccCCC-----C----chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043362 107 QVPEK-----G----LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177 (516)
Q Consensus 107 ~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 177 (516)
+..+. + ..+|+.+...|.+.|++++|+..|++..+.. ...|+...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~---------- 116 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG---------- 116 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH----------
Confidence 76431 1 3689999999999999999999999876521 111221111
Q ss_pred CCCCchHHHHHHHHHHHhC-CCHHHHHHHHhcCCCC-----C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043362 178 GFGSNPFLNNALINMYARC-GNLKKARAIFDGMPRK-----T----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247 (516)
Q Consensus 178 g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 247 (516)
..+++.+..+|... |++++|.+.|++..+. + ..+|+.+...|.+.|++++|+..|++..+.....
T Consensus 117 -----a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 -----ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp -----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred -----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 11233444445553 5555555555443210 1 2356677778888888888888888887743222
Q ss_pred CH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHhcC
Q 043362 248 DG------TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP------EHYTCMVDLLG--RAGQLNEALELIESML 312 (516)
Q Consensus 248 ~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 312 (516)
.. .++..+..++...|++++|...|++..+ +.|+. ..+..++..|. ..+++++|.+.|+++.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 21 1456677778888888888888888763 34432 12344555554 4577999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-08 Score=93.99 Aligned_cols=203 Identities=11% Similarity=0.028 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-C---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPR--K-T---VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD-GTAFVS 254 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ 254 (516)
...+-.+...+.+.|++++|.+.|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 44444555556666666666666665542 1 2 34555555566666666666666666555321 111 233444
Q ss_pred HHHHHhc--------cCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 043362 255 VLSACSH--------AGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325 (516)
Q Consensus 255 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 325 (516)
+..++.. .|++++|...|+++.+.+ |+ ......+.......+.+ ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4445555 566666666666655432 21 11111111100000000 111356678
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc---cchHHHhhHHHHc----------CChhHHHHHHHHHHhCCCCCCCceeEEE
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNT---GYYVLLSNIYSEA----------RNLDGIMRVRMMMRERRLKKDPGYSYVE 392 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~i~ 392 (516)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++.+.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------- 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----------
Confidence 88999999999999999999998854 4788899999877 89999999999987632
Q ss_pred ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 043362 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426 (516)
Q Consensus 393 ~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 426 (516)
..+|...++...+..+...+.+
T Consensus 226 ------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2345566666666766666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-07 Score=94.29 Aligned_cols=352 Identities=8% Similarity=-0.017 Sum_probs=235.5
Q ss_pred chHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC---HHHHHHH
Q 043362 28 VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS---VDYGRKL 104 (516)
Q Consensus 28 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~ 104 (516)
..+.+..|++.+..+ +-|..+|..++..+...+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666664 678899999999999999999999999999988 47788899999999999999 9999999
Q ss_pred HcccCC-----CCchHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------
Q 043362 105 FDQVPE-----KGLITWNAMISGYAQNGLA--------THVLELYREMKS-LGV-CPD-AVTFVGVLSSCA--------- 159 (516)
Q Consensus 105 f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~--------- 159 (516)
|++... +++..|...+.-..+.++. +.+.++|+.... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 998754 5667888877665555543 334477777554 466 564 455655554432
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-------------CCCHHHHHHHHhc------------------
Q 043362 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR-------------CGNLKKARAIFDG------------------ 208 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~------------------ 208 (516)
..+.++.++.+|.+++......-..+|......--. ..+++.|...+..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 234577888888888764322222333211111000 0112223333221
Q ss_pred -------------------------------------------------CC---CCCHhHHHHHHHHHHhcCCHHHHH-H
Q 043362 209 -------------------------------------------------MP---RKTVVSWTAIIGGYGIHGHGEVAV-Q 235 (516)
Q Consensus 209 -------------------------------------------------m~---~~~~~~~~~li~~~~~~g~~~~A~-~ 235 (516)
.. ..+...|-..+.-+.+.|+.++|. +
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 10 012223444444455677778886 8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--------CCCC------------HHHHHHHHHHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--------LQPG------------PEHYTCMVDLL 295 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~~ 295 (516)
+|++.... .+.+...+...+......|+++.|.++|+.+..... -.|+ ..+|...++..
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 88888764 344555566777778888999999999999885310 0131 34688888888
Q ss_pred HhcCCHHHHHHHHHhcCCC-C--CHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 296 GRAGQLNEALELIESMLVE-P--DGAVWGALLGACKI-HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~~~-p--~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.+.|.++.|..+|.++... | ....|...+..-.. .++.+.|..+|+.+++..|+++..+...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8889999999999887522 2 23334322222223 356899999999999999988888888888888899999999
Q ss_pred HHHHHHHhCCC
Q 043362 372 RVRMMMRERRL 382 (516)
Q Consensus 372 ~~~~~m~~~~~ 382 (516)
.+|+.......
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99998876544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-08 Score=91.44 Aligned_cols=235 Identities=11% Similarity=0.031 Sum_probs=113.3
Q ss_pred cCCHHHHHHHHcccCCCCc-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 173 (516)
.|++..+..-...+...+. ..-.-+.++|...|++.... .-.|....+..+.. |...+ +...+++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELEN 91 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHH
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHH
Confidence 5777776665555433222 22223446666666665311 11233223222222 22221 4445555
Q ss_pred HHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 043362 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-----KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP- 247 (516)
Q Consensus 174 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 247 (516)
..+.+ +++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 44443 23333444566666666666666666665421 23445555566666666666666666666552 44
Q ss_pred ----CHHHHHHHHHHH--hccC--ChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------
Q 043362 248 ----DGTAFVSVLSAC--SHAG--LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV------ 313 (516)
Q Consensus 248 ----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 313 (516)
+..+...+..++ ...| +..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+..
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 234444444442 2222 566666666665532 23322222333355556666666666554321
Q ss_pred -----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 314 -----EP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 314 -----~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
.| ++.+...++......|+ +|.++++++.+..|+++
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 13 24444344444444444 55566666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-09 Score=96.72 Aligned_cols=220 Identities=15% Similarity=-0.007 Sum_probs=131.1
Q ss_pred HhCCCchHHHHHHHHhHHC-------CCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh------CC-CCChhHHHHH
Q 043362 23 VLNSLVSEAVSLFGKMREQ-------GVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF------GL-DLDFSVGNCL 88 (516)
Q Consensus 23 ~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 88 (516)
...|++++|+..|++..+. ..+....++..+...+...|++++|...+..+++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 21223556777788888889999999888887765 22 2234577888
Q ss_pred HHHHHHcCCHHHHHHHHcccCCC--------C---chHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEK--------G---LITWNAMISGYAQNGLATHVLELYREMKSL------GVCP-DAVT 150 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t 150 (516)
...|...|++++|...|++..+. + ..+|..+...|...|++++|+..|++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888775421 1 356777788888888888888888877653 1123 2446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-------C-CCCchHHHHHHHHHHHhCC------CHHHHHHHHhcCCCC---C
Q 043362 151 FVGVLSSCAHLGAHSVGLEVEQQIQAN-------G-FGSNPFLNNALINMYARCG------NLKKARAIFDGMPRK---T 213 (516)
Q Consensus 151 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-------g-~~~~~~~~~~li~~y~~~g------~~~~A~~~~~~m~~~---~ 213 (516)
+..+...+...|++++|...++++.+. . .......+..+...+...+ .+..+...++..... .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 667777777888888888888777653 1 1112223333333333222 233333344433322 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++..+...|...|++++|..+|++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455556666666666666666665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=92.51 Aligned_cols=180 Identities=12% Similarity=0.059 Sum_probs=93.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 132 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
|+..|++....+ .++..++..+..++...|++++|.+++.+.+..+. ..+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 34444445555666666666666666666655442 2345555666666666666666666666654
Q ss_pred CCC-------HhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 043362 211 RKT-------VVSWTAIIGG--YGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279 (516)
Q Consensus 211 ~~~-------~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 279 (516)
+.+ ..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 221 2333334434 22223 566666666666442 3442233333445666666666666666544321
Q ss_pred C-C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 043362 280 G-L-------QPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD 316 (516)
Q Consensus 280 ~-~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 316 (516)
. + +-++.+...+|......|+ +|.+++.++. ..|+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 0 2244455444444444554 5556665554 3343
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=81.62 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
+|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 35555666666666666666666665542 224445555555566666666666666665543 122344444555555
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
...|++++|.+.++++. ..| +...|..+...+...|++++|...++++.+..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 55555555555555443 112 344444555555555555555555555555444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-09 Score=94.43 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C----CHhH
Q 043362 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN---PFLNNALINMYARCGNLKKARAIFDGMPR--K----TVVS 216 (516)
Q Consensus 146 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~~~~ 216 (516)
.+...+......+...|++++|...++.+++.. +.+ ...+..+..+|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677788888999999999999999999864 223 67788899999999999999999998753 2 2456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 217 WTAIIGGYGI--------HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 217 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
+..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999885 3432111 1111111111111 12235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCcc
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIH----------KNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
..+...|.+.|++++|...|+++. ..|+ ...+..+..+|... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 567788888999999999888775 2343 45666777777655 8899999999999999998753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=82.60 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=113.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|..++..+.+. .+.+...+..+...+...|++++|...++++. ...+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788889999999999999999865 23367788889999999999999999999876 3346788889999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
..|++++|...++++.+..|.+...+..++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999999889999999999999999999999988754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.8e-08 Score=87.11 Aligned_cols=181 Identities=10% Similarity=-0.002 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR--KT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG--TAFVSV 255 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 255 (516)
..+-.+...+.+.|++++|.+.|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444455566667777777777766542 21 235556666777777777777777776664211111 123333
Q ss_pred HHHHhc------------------cCChHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 043362 256 LSACSH------------------AGLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEALELIESMLVEPD 316 (516)
Q Consensus 256 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 316 (516)
..++.. .|+.++|...|+.+.+. .|+. ..+.++..+. .+....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-----------
Confidence 333332 34445555555555432 1211 1111110000 000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---cchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT---GYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112455668889999999999999999999875 5688999999999999999999999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-08 Score=93.04 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=134.0
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 202 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
..+.+......+...+..+...+.+.|++++|...|++..... +-+...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence 3334444334455566777788888999999999999988752 335677888888999999999999999988754
Q ss_pred CCCHHHHHHH-HHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ccchHH
Q 043362 282 QPGPEHYTCM-VDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN--TGYYVL 356 (516)
Q Consensus 282 ~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~ 356 (516)
.|+....... ...+.+.++.++|...+++.. ..| +...+..+...+...|++++|...++++++.+|++ ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 4554433332 233667777888888887765 445 58889999999999999999999999999999987 778999
Q ss_pred HhhHHHHcCChhHHHHHHHHHH
Q 043362 357 LSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
++.+|...|+.++|...+++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999988877653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=91.33 Aligned_cols=140 Identities=12% Similarity=0.007 Sum_probs=101.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcC
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAG 299 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 299 (516)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3344556677777777765442 232 334556777777888888888888877754 33 5677888888888888
Q ss_pred CHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 300 QLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAEL-AFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 300 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
++++|...|++.. ..| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888765 456 47788888888888888876555 4588899999998888888888777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-09 Score=110.14 Aligned_cols=168 Identities=11% Similarity=-0.069 Sum_probs=115.2
Q ss_pred HhCCCHHHHHHHHhcCC-----------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 194 ARCGNLKKARAIFDGMP-----------RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 194 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
...|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777776654 2345667777777777777777777777777642 23456666777777777
Q ss_pred CChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
|++++|...|+++.+. .| +...|..+...|.+.|++++ .+.|++.. ..| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777753 33 45666777777777777777 77777664 334 466777777777777777777777
Q ss_pred HHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 340 FGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 340 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
++++++++|++..++..++.+|...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777765554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-07 Score=83.25 Aligned_cols=161 Identities=9% Similarity=-0.046 Sum_probs=107.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG----LTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|++..+. -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45555556666666666667777776666644 44555556656665 5 677777777777542 255666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcCC-CCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 289 TCMVDLLGR----AGQLNEALELIESMLV-EPD---GAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 289 ~~li~~~~~----~g~~~~A~~~~~~m~~-~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
..|..+|.. .+++++|.+.|++... .|+ ...+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 6777777777777652 232 6677777777766 67888888888888777 445567777
Q ss_pred HhhHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 043362 357 LSNIYSEA-R-----NLDGIMRVRMMMRERRL 382 (516)
Q Consensus 357 l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 382 (516)
|+.+|... | ++++|.+.++...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88887654 3 78888888887766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-08 Score=102.76 Aligned_cols=168 Identities=8% Similarity=-0.090 Sum_probs=133.5
Q ss_pred hcCCCchHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHc
Q 043362 58 VDPGYLWLGMCCHCICV--------KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQN 126 (516)
Q Consensus 58 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 126 (516)
...+++++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++..+. +...|+.+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67789999999999887 433 556678888899999999999999999887642 457888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 043362 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206 (516)
Q Consensus 127 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 206 (516)
|++++|++.|++..+.. +-+...+..+..++...|++++ .+.++++++.. +.+...+..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988753 2356678888888999999999 99999998875 446778888999999999999999999
Q ss_pred hcCCCC---CHhHHHHHHHHHHhcCC
Q 043362 207 DGMPRK---TVVSWTAIIGGYGIHGH 229 (516)
Q Consensus 207 ~~m~~~---~~~~~~~li~~~~~~g~ 229 (516)
++..+. +...|..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 988753 34567777777766554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-07 Score=88.66 Aligned_cols=219 Identities=11% Similarity=-0.010 Sum_probs=147.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.|++++|.+++++..+.. +.. + +...++++.|...+.++ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888998888776531 111 0 11135666666665543 3456677777777777
Q ss_pred HhcCCCC-----C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCChHHHHHH
Q 043362 206 FDGMPRK-----T----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRPD--GTAFVSVLSACSHAGLTDKGLEY 271 (516)
Q Consensus 206 ~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 271 (516)
|.+..+- + ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7654311 1 3467778888888899999998888865421 1121 3567778888888 999999999
Q ss_pred HHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 043362 272 FYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIESML-V---EPD----GAVWGALLGACKIHKNVELAELA 339 (516)
Q Consensus 272 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~g~~~~A~~~ 339 (516)
|++..+.+.-..+ ..++..+...|.+.|++++|...|++.. . .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754211111 4577888999999999999999998875 1 122 23566666777888999999999
Q ss_pred HHHHhhcCCCCccc-----hHHHhhHHHHcCChhHHHH
Q 043362 340 FGKVIKLEPMNTGY-----YVLLSNIYSEARNLDGIMR 372 (516)
Q Consensus 340 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 372 (516)
+++.+ +.|..... ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865433 23444444 4566655544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.7e-08 Score=98.49 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 196 CGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 196 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677788888877653 356778888888888999999999999888753 335677888888899999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcC
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIH---KNVELAELAFGKVIKLE 347 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~ 347 (516)
++..+. -+.+...+..+...|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998864 12357788889999999999999999998876 345 578888899999999 99999999999999999
Q ss_pred CCCccchHHHh
Q 043362 348 PMNTGYYVLLS 358 (516)
Q Consensus 348 p~~~~~~~~l~ 358 (516)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98887777665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=84.38 Aligned_cols=75 Identities=15% Similarity=-0.011 Sum_probs=58.3
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN--TGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
|...+++.. ..| +...+..+...+...|++++|...++++++.+|+. ...+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555443 345 47888888888888999999999999998888764 4478888899999999999888887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.6e-08 Score=100.28 Aligned_cols=151 Identities=17% Similarity=0.065 Sum_probs=117.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043362 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEAL 305 (516)
Q Consensus 227 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 305 (516)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+. .| +...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988752 335678889999999999999999999999853 44 5788999999999999999999
Q ss_pred HHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc---CChhHHHHHHHHHHhC
Q 043362 306 ELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA---RNLDGIMRVRMMMRER 380 (516)
Q Consensus 306 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 380 (516)
+.+++.. ..| +...|..+...+...|++++|...++++.+.+|++...+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999876 345 5889999999999999999999999999999999999999999999999 9999999999887654
Q ss_pred C
Q 043362 381 R 381 (516)
Q Consensus 381 ~ 381 (516)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-07 Score=85.29 Aligned_cols=164 Identities=9% Similarity=0.019 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHH-HHH
Q 043362 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWT-AII 221 (516)
Q Consensus 145 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~-~li 221 (516)
+.+...+..+...+...|++++|...++++.+.. +.+...+..|...|.+.|++++|.+.|+++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445567777788888999999999999998864 44677888899999999999999999998874 3333222 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
..+.+.++.++|...|++..... +.+...+..+..++...|++++|...|.++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34666777778888888877752 34566777888888888888888888888876521111256677778888888887
Q ss_pred HHHHHHHHh
Q 043362 302 NEALELIES 310 (516)
Q Consensus 302 ~~A~~~~~~ 310 (516)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-07 Score=82.50 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=59.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-
Q 043362 189 LINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL- 264 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 264 (516)
+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. +.+..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 4555555555555555555443 2244555555555555555555555555555532 2234444445444443332
Q ss_pred -hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 043362 265 -TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGAL 323 (516)
Q Consensus 265 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 323 (516)
.+.+...+.... ...|....+..+...+...|++++|...|++.. ..|+......+
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222333333322 111111222233344445566666666666554 44554444333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-07 Score=80.68 Aligned_cols=129 Identities=14% Similarity=0.042 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
+.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++++++.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 336777777777777777777776642 2345667777777777777777777777777754 34566666676666554
Q ss_pred CC--HHHHHHHHhcCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043362 197 GN--LKKARAIFDGMPRKTVV--SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249 (516)
Q Consensus 197 g~--~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 249 (516)
|. .+.+...|+....++.. .|.....++...|++++|...|++..+ ..|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 43 34455566665555433 223334445556666666666666665 34554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=6.1e-06 Score=83.01 Aligned_cols=348 Identities=9% Similarity=-0.041 Sum_probs=196.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCC-CchHHHHHHHHHHHh-CC-CCChhHHHHHHH
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHCICVKF-GL-DLDFSVGNCLMT 90 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~-g~-~~~~~~~~~ll~ 90 (516)
.|...+..|-. |+++.+..+|++.+.. .|+...|..-+.-..+.+ ..+....+|+.++.. |. ..+..+|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 35555555544 7899999999998875 578888877776655544 345667788877765 43 335677887777
Q ss_pred HHH----HcCCHHHHHHHHcccCCC---Cc-hHHHHHHHHHH-------------HcCChhHHHHHHHHHHHCCCCCCHH
Q 043362 91 MYV----KCGSVDYGRKLFDQVPEK---GL-ITWNAMISGYA-------------QNGLATHVLELYREMKSLGVCPDAV 149 (516)
Q Consensus 91 ~~~----~~g~~~~A~~~f~~~~~~---~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~ 149 (516)
.+. ..|+++.+.++|++.... +. ..|......-. ..+.+..|..++..+...--..+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 654 346788899998887442 11 12222211100 0112233343443333210001222
Q ss_pred HHHHHHHHHHhc--CC-----hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC-C-CHhHHHHH
Q 043362 150 TFVGVLSSCAHL--GA-----HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-K-TVVSWTAI 220 (516)
Q Consensus 150 t~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-~~~~~~~l 220 (516)
.|...+.--... +- .+.+..+|++++... +.+..+|-..+..+.+.|+.++|.++|++... | +...|.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~-- 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL-- 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH--
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH--
Confidence 343333322111 11 234667888877753 45577777777878888888888888875432 2 222232
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---------CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHH
Q 043362 221 IGGYGIHGHGEVAVQLFDEMLKS---------GI-RP--DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288 (516)
Q Consensus 221 i~~~~~~g~~~~A~~~~~~m~~~---------g~-~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 288 (516)
.|+...+.++. ++.+.+. +. .+ ....|...+....+.+..+.|..+|.++ ... ..+...|
T Consensus 251 --~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~ 322 (493)
T 2uy1_A 251 --YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVF 322 (493)
T ss_dssp --HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHH
T ss_pred --HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHH
Confidence 22222111111 2222211 00 11 1244556666666677788888888888 321 2244455
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 289 TCMVDLLGRAG-QLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 289 ~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
...+..-...| +.+.|..+|+... .-| +...|...+.-....|+.+.|..+|+++. .....|...+..-...|
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 44333333334 5888888888765 113 35556666776677888888888888873 34456666666667778
Q ss_pred ChhHHHHHHHHHHh
Q 043362 366 NLDGIMRVRMMMRE 379 (516)
Q Consensus 366 ~~~~a~~~~~~m~~ 379 (516)
+.+.+.++++++.+
T Consensus 399 ~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 399 SMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888887776653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=83.94 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=101.5
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHK 331 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g 331 (516)
|...+...|++++|+..+..... ..| +...+-.+...|.+.|++++|.+.|++.. ..| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677889999999888763 344 34456788999999999999999999886 456 5899999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHH-HHHHHh
Q 043362 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV-RMMMRE 379 (516)
Q Consensus 332 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 379 (516)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.4e-08 Score=79.58 Aligned_cols=101 Identities=7% Similarity=-0.045 Sum_probs=87.9
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 280 GLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 280 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
.+.| +...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3444 35567778888899999999999999876 455 58899999999999999999999999999999999999999
Q ss_pred HhhHHHHcCChhHHHHHHHHHHhC
Q 043362 357 LSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 357 l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++.+|...|++++|...+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-07 Score=79.37 Aligned_cols=159 Identities=9% Similarity=-0.089 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHG----HGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 257 (516)
+..+..|..+|...+++++|.+.|++..+ .+..++..+...|.. + ++++|+..|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 34444444444444555555555444332 234444444444444 4 5666666666665543 4455556666
Q ss_pred HHhc----cCChHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 043362 258 ACSH----AGLTDKGLEYFYGMKNKYGLQPG---PEHYTCMVDLLGR----AGQLNEALELIESMLVE-PDGAVWGALLG 325 (516)
Q Consensus 258 a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-p~~~~~~~ll~ 325 (516)
.|.. .+++++|..+|.+..+. .|. +..+..|..+|.. .+++++|...|++.... ++...+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6665 66777777777777632 332 5666777777776 66778888777776422 45556666666
Q ss_pred HHHhc------CCHHHHHHHHHHHhhcCC
Q 043362 326 ACKIH------KNVELAELAFGKVIKLEP 348 (516)
Q Consensus 326 ~~~~~------g~~~~A~~~~~~~~~~~p 348 (516)
.|... .+.++|...+++..+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66532 278888888888777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-07 Score=80.04 Aligned_cols=125 Identities=7% Similarity=-0.032 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKI 329 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 329 (516)
+..+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|.+.+++.. ..| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556667777777777776653 4567777778888888888888888887765 234 57788888888889
Q ss_pred cCCHHHHHHHHHHHhhcCCCCc----------------cchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 330 HKNVELAELAFGKVIKLEPMNT----------------GYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|++++|+..++++.+..|.+. .++..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998887766 788899999999999999999999987653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-06 Score=79.36 Aligned_cols=160 Identities=11% Similarity=-0.061 Sum_probs=118.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGI-RPDGT----AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTC 290 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 290 (516)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...+..+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888899999999988876321 22221 2334666677788999999999988863222223 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----C-C--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchH
Q 043362 291 MVDLLGRAGQLNEALELIESML-----V-E--PD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYV 355 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-----~-~--p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 355 (516)
+...|...|++++|...++++. . . +. ..++..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999998888765 1 1 11 3477888899999999999999999998765322 45788
Q ss_pred HHhhHHHHcCC-hhHHHHHHHHHHh
Q 043362 356 LLSNIYSEARN-LDGIMRVRMMMRE 379 (516)
Q Consensus 356 ~l~~~~~~~g~-~~~a~~~~~~m~~ 379 (516)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-07 Score=81.00 Aligned_cols=185 Identities=12% Similarity=0.037 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CH---hHHH
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLKKARAIFDGMPR--K-TV---VSWT 218 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~ 218 (516)
+...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|.+.|++..+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999864221 245778889999999999999999998752 2 22 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 043362 219 AIIGGYGI------------------HGHGEVAVQLFDEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKY 279 (516)
Q Consensus 219 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 279 (516)
.+..++.. .|+.++|+..|+++.+. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999884 45432 22111 111111110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 280 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
.......+...|.+.|++++|...|+++. ..|+ ...+..+..++...|+.++|...++++....|++..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01122356778899999999999999876 3354 256788889999999999999999999988887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-06 Score=75.72 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=148.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchHHHHHHHHHH----HhC--
Q 043362 126 NGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLG--AHSVGLEVEQQIQANGFGSNPFLNNALINMY----ARC-- 196 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-- 196 (516)
....++|++++.+++.. .|+ ...|+.--.++...+ +++++...++.++... +.+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33446788888888774 354 445676667777777 8888888888888764 34555555444444 444
Q ss_pred -CCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------
Q 043362 197 -GNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGE--VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL------ 264 (516)
Q Consensus 197 -g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 264 (516)
++++++.++++++. .+|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 67778888777765 346677777777777777777 88888888887642 355566655555555555
Q ss_pred hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhcC-C----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE-ALELIESML-V----EPDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
++++++.+..+... -+-|...|+.+-..+.+.|+..+ +.++.++.. . ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 67777777777653 12356677777777777776433 444555543 1 2356777777777777777777887
Q ss_pred HHHHHhh-cCCCCccchHHH
Q 043362 339 AFGKVIK-LEPMNTGYYVLL 357 (516)
Q Consensus 339 ~~~~~~~-~~p~~~~~~~~l 357 (516)
+++.+.+ .+|.....|...
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHH
Confidence 7777775 677665555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-06 Score=77.84 Aligned_cols=145 Identities=10% Similarity=-0.069 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 043362 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265 (516)
Q Consensus 186 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 265 (516)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456667777888888888877777777777777777777788888877777776642 33455666677777777777
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043362 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP-DGAVWGALLGACKIHKNVELAELAFGKVI 344 (516)
Q Consensus 266 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 344 (516)
++|...|+...+...-.+... +...| +...| ....|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777664311111000 00000 01122 24667777777888888888888888888
Q ss_pred hcCCCC
Q 043362 345 KLEPMN 350 (516)
Q Consensus 345 ~~~p~~ 350 (516)
+..|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-06 Score=78.11 Aligned_cols=213 Identities=14% Similarity=0.112 Sum_probs=169.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhcCC---CCCHhHHHHHHHHH----Hhc---CCH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMP---RKTVVSWTAIIGGY----GIH---GHG 230 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~----~~~---g~~ 230 (516)
..++|..+.+.++..+ +.+..+|+.--..+...| +++++++.++.+. ..+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3468899999998875 446777888888888888 9999999999876 34667788765555 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ------LN 302 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~ 302 (516)
++++++++++.+.. +-|...|..-...+.+.|.++ ++++.+.++.+. . .-|-..|+.-...+.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999864 446778877777778888888 999999999975 1 2366677766666777776 89
Q ss_pred HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhcC---CCCccchHHHhhHHHHcCChhHHHHHHHH
Q 043362 303 EALELIESML-VEP-DGAVWGALLGACKIHKNVE-LAELAFGKVIKLE---PMNTGYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 303 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
++++.++++. ..| |...|+-+...+...|+.. ....+++++.+++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999988776 445 7899999888888887744 4556778877766 78888999999999999999999999999
Q ss_pred HHh
Q 043362 377 MRE 379 (516)
Q Consensus 377 m~~ 379 (516)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=79.17 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=88.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhcc
Q 043362 187 NALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA-CSHA 262 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~ 262 (516)
..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+......+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3445556666666666666666552 24556666666666666666666666665543 2233222111111 1111
Q ss_pred CChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD---GAVWGALLGACKIHKNVELAE 337 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~~g~~~~A~ 337 (516)
+....|...+++..+. .| +...+..+...|...|++++|...|+++. ..|+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223356666666643 33 46667777777777777777777777654 3343 456777777777777777777
Q ss_pred HHHHHHh
Q 043362 338 LAFGKVI 344 (516)
Q Consensus 338 ~~~~~~~ 344 (516)
..+++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-07 Score=73.26 Aligned_cols=107 Identities=9% Similarity=0.030 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+......+.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++++|.+.+++.. ..| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455566666677777777777766643 12246666677777777777777777777655 334 4677777777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
..|++++|+..|+++++++|++..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 8888888888888888888877766655544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-06 Score=84.79 Aligned_cols=323 Identities=10% Similarity=-0.060 Sum_probs=200.0
Q ss_pred hCC-CchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC-HHHH
Q 043362 24 LNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS-VDYG 101 (516)
Q Consensus 24 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~A 101 (516)
+.| +++.|..+|+.+... -|. ++++.+.++|+..+.. .|+..+|...+..-.+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887754 343 7899999999999885 5799999999998888774 3455
Q ss_pred HHHHcccCC------CCchHHHHHHHHHH----HcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHh---------
Q 043362 102 RKLFDQVPE------KGLITWNAMISGYA----QNGLATHVLELYREMKSLGVCPDA--VTFVGVLSSCAH--------- 160 (516)
Q Consensus 102 ~~~f~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~--------- 160 (516)
..+|+.... .+...|...+.-+. .+++.+.+..+|++.... ++.. ..|..... +..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~ 144 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHH
Confidence 666665431 23467887776543 356788899999999873 3321 12221111 111
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--C-----HHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 043362 161 -----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--N-----LKKARAIFDGMPR---KTVVSWTAIIGGYG 225 (516)
Q Consensus 161 -----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~m~~---~~~~~~~~li~~~~ 225 (516)
.+.+..|+.+++.+...--..+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1223344555554443100123446666665433221 1 3445667776542 35778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--------CCC---CHHHHHHHHHH
Q 043362 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--------LQP---GPEHYTCMVDL 294 (516)
Q Consensus 226 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p---~~~~~~~li~~ 294 (516)
+.|+.++|..+|++.... |+...+.. +|......++ +++.+.+.+- ..+ ....|...++.
T Consensus 225 ~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999987 44332221 2222111111 1333332210 001 13457777787
Q ss_pred HHhcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 295 LGRAGQLNEALELIESMLVEP--DGAVWGALLGAC-KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
+.+.|.++.|..+|++.. .| +...|......- ...++.+.|..+|+.+++..|+++..+...+....+.|+.+.|.
T Consensus 296 ~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778889999999999883 33 344454322221 22347999999999999988888777777788888999999999
Q ss_pred HHHHHH
Q 043362 372 RVRMMM 377 (516)
Q Consensus 372 ~~~~~m 377 (516)
.+++..
T Consensus 375 ~l~er~ 380 (493)
T 2uy1_A 375 ALFKRL 380 (493)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 999986
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=78.96 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44566777888888999999999888775 345 6888888888899999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-07 Score=70.98 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043362 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGAC 327 (516)
Q Consensus 250 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 327 (516)
..+..+...+...|++++|..++.++.+. .+.+...+..+...+.+.|++++|...++++. ...+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666667777777776666643 12345666677777777777777777777665 223577788888888
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
...|++++|...++++.+..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888899999888888888888877777777765543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-07 Score=83.23 Aligned_cols=163 Identities=10% Similarity=-0.079 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCC--CCC--HH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD-G----TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL--QPG--PE 286 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 286 (516)
.+...+..+...|++++|.+.+++..+.....+ . ..+..+...+...|++++|...+.+..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677888888888888887776432211 1 12334555667788999999988887643111 111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------Cc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML----VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPM------NT 351 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 351 (516)
.++.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999998888764 1222 257888889999999999999999998875432 14
Q ss_pred cchHHHhhHHHHcCChhHH-HHHHHHHH
Q 043362 352 GYYVLLSNIYSEARNLDGI-MRVRMMMR 378 (516)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 378 (516)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5678899999999999999 77677664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.2e-07 Score=75.06 Aligned_cols=126 Identities=8% Similarity=-0.010 Sum_probs=90.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666667777777777666643 12246666777777777777777777777654 233 5777888888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhh--HHHHcCChhHHHHHHHHHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSN--IYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 378 (516)
..|++++|...++++.+..|.+...+..+.. .+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999998888888777644444 4778888999888887664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.7e-07 Score=73.47 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=89.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 281 LQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 281 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+.|+ ...+......|.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4453 4567788899999999999999999876 445 689999999999999999999999999999999999999999
Q ss_pred hhHHHHcCChhHHHHHHHHHHhC
Q 043362 358 SNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 358 ~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=7.8e-07 Score=71.21 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...+.+.... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777776653 12356667777777777888888887777665 234 47778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCCh
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 367 (516)
+...|++++|...++++.+..|++...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999998888888888888887765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.1e-07 Score=71.88 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++.. ..| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555566666666666666665532 12245556666666666677777776666654 223 46777777788
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
+...|++++|...++++.+..|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888877777777777766553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=88.46 Aligned_cols=50 Identities=6% Similarity=-0.098 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc-CChhHHHHHHHHHHh
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA-RNLDGIMRVRMMMRE 379 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 379 (516)
.|+.++|...++++.+.+|++......+...+.+. +.+++|.++|..+.+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57788888888888888887776666676666665 678888888887765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-07 Score=85.62 Aligned_cols=197 Identities=9% Similarity=-0.059 Sum_probs=149.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 239 (516)
..|++++|.+++++..+... .. .+...+++++|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35778899999988876421 11 01115889999888764 36678899999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043362 240 MLKS----GIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIES 310 (516)
Q Consensus 240 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 310 (516)
..+. +-.+. ..+|..+...|...|++++|...|++..+.+.-..+ ..++..+...|.. |++++|...+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 347888889999999999999999988754211111 3567888889988 999999999988
Q ss_pred cC-CC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------cchHHHhhHHHHcCChhHHHHHHHH
Q 043362 311 ML-VE---PD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT------GYYVLLSNIYSEARNLDGIMRVRMM 376 (516)
Q Consensus 311 m~-~~---p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 376 (516)
.. .. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75 11 11 46788888999999999999999999998765432 2566777888889999999999998
Q ss_pred HH
Q 043362 377 MR 378 (516)
Q Consensus 377 m~ 378 (516)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-06 Score=78.39 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=79.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hHHHHHH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLG-VCPDAV----TFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SN----PFLNNAL 189 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 189 (516)
+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...+.++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555544421 111211 1222333444445555555555555542111 11 1245555
Q ss_pred HHHHHhCCCHHHHHHHHhcCC-------CC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMP-------RK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK----SGIRPD-GTAFVS 254 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~-------~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ 254 (516)
...|...|++++|...|+++. .. ...+|..+...|.+.|++++|+..+++..+ .+..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 555666666655555555443 11 123555666666666777777666666543 121222 456666
Q ss_pred HHHHHhccCC-hHHHHHHHHHhHH
Q 043362 255 VLSACSHAGL-TDKGLEYFYGMKN 277 (516)
Q Consensus 255 ll~a~~~~g~-~~~a~~~~~~~~~ 277 (516)
+..++...|+ .++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6677777773 4777777766654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.4e-07 Score=85.17 Aligned_cols=143 Identities=14% Similarity=0.040 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
...|..+...|.+.|++++|+..|++..... |+...+ ..+.+.+.- .. ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH--------HHHHHHHHHH
Confidence 4456666666666666666666666666532 221000 001111100 00 1467788888
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH-
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI- 370 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 370 (516)
.|.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988876 345 6888999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 043362 371 MRVRMMMR 378 (516)
Q Consensus 371 ~~~~~~m~ 378 (516)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44566664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-07 Score=72.67 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455666777888899999988888775 345 67888888888999999999999999999999999889999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 043362 363 EARNLDGIMRVRMMMRER 380 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~~ 380 (516)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=76.17 Aligned_cols=151 Identities=16% Similarity=0.082 Sum_probs=79.4
Q ss_pred hCCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHhccCChH
Q 043362 195 RCGNLKKARA---IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK----SGIRP-DGTAFVSVLSACSHAGLTD 266 (516)
Q Consensus 195 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 266 (516)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44443333445566666666666666666666666544 11111 1234555556666667777
Q ss_pred HHHHHHHHhHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCH
Q 043362 267 KGLEYFYGMKNKYGLQP-G----PEHYTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNV 333 (516)
Q Consensus 267 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~ 333 (516)
+|...+.+..+...-.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 76666666554311111 1 2335555666666666666666665543 1111 22344555556666666
Q ss_pred HHHHHHHHHHhh
Q 043362 334 ELAELAFGKVIK 345 (516)
Q Consensus 334 ~~A~~~~~~~~~ 345 (516)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.5e-07 Score=77.10 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=71.5
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCCH--HH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA-CKIHKNV--EL 335 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~g~~--~~ 335 (516)
..|++++|...+....+. -+.+...+..+...|...|++++|...|++.. ..| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345556666666655543 12245566666666666666666666666554 223 45566666666 5566666 77
Q ss_pred HHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 336 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...++++++.+|+++.++..++.+|...|++++|...++...+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777667777777777777777777777766554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=69.87 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455666677777788888888777765 334 57777778888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHh
Q 043362 363 EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~ 379 (516)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 88888888888887765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.6e-06 Score=77.28 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc--hH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPD-A----VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG---SN--PF 184 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---~~--~~ 184 (516)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...+.+..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456666777777777777776665421111 0 11222333344455555555555555432111 11 22
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 185 LNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
+++.+...|...|++++|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444445555444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-06 Score=78.10 Aligned_cols=126 Identities=9% Similarity=-0.116 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHh
Q 043362 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMVDLLGR 297 (516)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 297 (516)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|...... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 344445555555555555554432 233223333334555566666666666544321 0 110 1245555666666
Q ss_pred cCCHHHHHHHHHhcCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 298 AGQLNEALELIESMLVE---PD--GAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 298 ~g~~~~A~~~~~~m~~~---p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.|++++|+..|++.... |. ...+..+..++...|+.++|...|+++...+|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666655311 32 234555566667777777777777777777776
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=67.76 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CccchHHHhhH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSNI 360 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 360 (516)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4455666777777778888777777664 223 5677777788888888888888888888888888 77788888888
Q ss_pred HHHc-CChhHHHHHHHHHHhCC
Q 043362 361 YSEA-RNLDGIMRVRMMMRERR 381 (516)
Q Consensus 361 ~~~~-g~~~~a~~~~~~m~~~~ 381 (516)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.1e-06 Score=74.90 Aligned_cols=137 Identities=15% Similarity=0.049 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHh
Q 043362 185 LNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD--GTAFVSVLSACS 260 (516)
Q Consensus 185 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~ 260 (516)
..-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 445567778888999999999988863 332355556667888899999999887554321 111 235677788888
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPG--PEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGAL 323 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 323 (516)
..|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++. ..|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999888742 22253 3456667778888999999999998876 45664444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=76.19 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=36.4
Q ss_pred cCCHHHHHH---HHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChHH
Q 043362 95 CGSVDYGRK---LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS----LGVCP-DAVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 95 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~ 166 (516)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..+++... .+..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 33332222234555555555555555555555555443 11111 12234444444555555555
Q ss_pred HHHHHHHHHH
Q 043362 167 GLEVEQQIQA 176 (516)
Q Consensus 167 a~~~~~~~~~ 176 (516)
|...+.+..+
T Consensus 85 A~~~~~~al~ 94 (203)
T 3gw4_A 85 ARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-06 Score=68.80 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+...+..+...+...|++++|...|++.. ..| +...|..+...+...|++++|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 56667777777778888888887777665 334 4777777888888888888888888888888888888888888888
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=69.42 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
.+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35566777888999999999998876 445 6888888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 043362 365 RNLDGIMRVRMMMRER 380 (516)
Q Consensus 365 g~~~~a~~~~~~m~~~ 380 (516)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0003 Score=66.32 Aligned_cols=180 Identities=8% Similarity=-0.128 Sum_probs=122.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCC-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 93 (516)
|+-+-....+.+..++|+++++.++..+ +-+..+|+.--.++...+ .++++...++.++... +.+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333344455566678999999988763 333445666666666666 5888888888888775 667778888777777
Q ss_pred Hc-C-CHHHHHHHHcccCCCCc---hHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 94 KC-G-SVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLAT--------HVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 94 ~~-g-~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
+. + ++++++++++++.+.+. .+|+--.-...+.|.++ ++++.+.++.+.. +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 76 6 78888888888877654 56665555555555555 7888888887754 3466677777766666
Q ss_pred cCC-------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 043362 161 LGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198 (516)
Q Consensus 161 ~g~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 198 (516)
.+. ++++.+....++... +.|...|+-+-..+.+.|.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 567777777777654 4466777666666665554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-06 Score=73.78 Aligned_cols=171 Identities=9% Similarity=-0.053 Sum_probs=103.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 043362 189 LINMYARCGNLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265 (516)
Q Consensus 189 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 265 (516)
.+......|++++|.+.++.-.+. ....|..+...+...|++++|+..|++.... .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 344445556777776666644322 3445666777777888888888888877763 2221100000 00
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 266 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
+.- ...+ ....+..+...|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++
T Consensus 80 ~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 0000 13566777888888899999988888775 334 5788888999999999999999999999
Q ss_pred hhcCCCCccchHHHhhHHHHcCChhHHH-HHHHHHHhC
Q 043362 344 IKLEPMNTGYYVLLSNIYSEARNLDGIM-RVRMMMRER 380 (516)
Q Consensus 344 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 380 (516)
+++.|++..++..+..++...++.+++. ..++.|...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998888877776 555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.8e-06 Score=64.65 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++.. ..| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555555566666555555542 12244555556666666666666666665544 223 4566666666777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHHHhh
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 359 (516)
..|++++|...++++.+..|+++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777777777777777777766655544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-06 Score=72.67 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=97.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCCH--
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL-LGRAGQL-- 301 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 301 (516)
...|++++|+..+++..... +.+...+..+...+...|++++|...|.++.+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3466788888888899999999999999888642 2356777788888 7788998
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 302 NEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
++|...+++.. ..| +...|..+...+...|++++|...++++++..|++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 99999998876 345 57888888899999999999999999999999987543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=71.93 Aligned_cols=103 Identities=9% Similarity=-0.065 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...|..+... -+.+...|..+..+|...|++++|...|++.. ..| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345566677778888888888888887754 12367777888888888899999888888775 345 57788888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
+...|++++|...|++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999887644
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.2e-06 Score=67.26 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGA 322 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ 322 (516)
...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++.. ..| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444555555555555555555555552 2343 4555666666667777777777666554 233 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
+...+...|++++|...++++++..|++...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77777788888888888888888888776555544444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=71.94 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
.+..+...+.+.|++++|.+.|++.. ..| +...|..+...+...|++++|+..++++++++|++...|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444444444455555554444443 222 3444444555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHH
Q 043362 365 RNLDGIMRVRMMMR 378 (516)
Q Consensus 365 g~~~~a~~~~~~m~ 378 (516)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-06 Score=66.26 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+...|++++|.+.++++. ..| +..+|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999999876 334 68889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 043362 363 EARNLDGIMRVRMMMRER 380 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~~ 380 (516)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-06 Score=84.72 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=94.2
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
..+...|++++|.+.+++..+. .| +...|..+...|.+.|++++|.+.+++.. ..| +...|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456678888888888888764 33 47788888888999999999999888876 445 588899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHhhH--HHHcCChhHHHHHHHH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVLLSNI--YSEARNLDGIMRVRMM 376 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 376 (516)
++|+..+++++++.|++...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999998888888888 8889999999999874
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=66.81 Aligned_cols=128 Identities=13% Similarity=-0.016 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..|..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+.+..+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777778888888888888877652 335667777778888888888888888888764 13356777888888
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHH--HHHHhcCCHHHHHHHHHHHhh
Q 043362 295 LGRAGQLNEALELIESML-VEP-DGAVWGALL--GACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~ 345 (516)
|...|++++|...+++.. ..| +...+..+. ..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888765 334 455553333 336677888888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.4e-06 Score=65.34 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
....+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35567788889999999999999999876 334 6888999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-06 Score=76.96 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 043362 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGG 223 (516)
Q Consensus 147 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 223 (516)
+...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455556666667777777777777776653 33566777777777788888888877776553 356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 302 (516)
|...|++++|+..|++..+.. |+. ..+...+..... ..++.... ..... ....+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 888888888888888876632 211 011111111111 11111111 12221 3444555544443332 68899
Q ss_pred HHHHHHHhcC-CCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHhhcC
Q 043362 303 EALELIESML-VEPDGA-VWGALLGACKIH-KNVELAELAFGKVIKLE 347 (516)
Q Consensus 303 ~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~ 347 (516)
+|.+.++... ..|+.. ....+...+... +.+++|..+|+++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9998887765 456543 333443444444 66888999999887643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-06 Score=69.64 Aligned_cols=97 Identities=12% Similarity=-0.033 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGAC 327 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 327 (516)
.+..+...+.+.|++++|...|+++... .| ++..|..+..+|...|++++|.+.|++.. ..| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4445555555666666666666666543 23 45566666666666677777766666654 334 366677777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC
Q 043362 328 KIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
...|++++|+..|++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777777754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.3e-06 Score=65.89 Aligned_cols=108 Identities=9% Similarity=-0.054 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...|.+..+. -+.+...|..+...|.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4445555666666666666666666643 12245666777777777777777777777665 334 4677777778888
Q ss_pred hcCCHHHHHHHHHHHhhcC------CCCccchHHHhhH
Q 043362 329 IHKNVELAELAFGKVIKLE------PMNTGYYVLLSNI 360 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 360 (516)
..|++++|...++++++++ |++......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888877 6665555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.7e-06 Score=65.98 Aligned_cols=117 Identities=3% Similarity=-0.110 Sum_probs=86.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
..++..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...+++++|...++.+++.. +.+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3466778888899999999999999999988763 3466777778888888889999988888888875 4566677777
Q ss_pred HHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcC
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNG 127 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 127 (516)
...|.+.|++++|.+.|++..+. +...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777788888877777765432 2345555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00034 Score=66.00 Aligned_cols=230 Identities=12% Similarity=0.042 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPD-AVTFVGVLSSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALINM 192 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 192 (516)
+++.+-....+.+..++|++++.++... .|+ ...|+.--.++...+ .++++...++.++... +.+..+|+.-...
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444444555667888888888875 344 445676666667777 5888888888888765 4567777766666
Q ss_pred HHhC-C-CHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043362 193 YARC-G-NLKKARAIFDGMPRK---TVVSWTAIIGGYGIHGHGE--------VAVQLFDEMLKSGIRPDGTAFVSVLSAC 259 (516)
Q Consensus 193 y~~~-g-~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 259 (516)
+.+. + +++++.++++++.+. |..+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6665 6 778888888887643 5667776655555555555 7888888888764 33666777666666
Q ss_pred hccCC-------hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhcC
Q 043362 260 SHAGL-------TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL--------------------NEALELIESML 312 (516)
Q Consensus 260 ~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~ 312 (516)
.+.+. ++++.+.+.++... -+-|...|+.+-..+.+.|+. .+..++...+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 66665 57777777777653 123566666666666655542 23333333332
Q ss_pred -C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCC
Q 043362 313 -V-------EPDGAVWGALLGACKIHKNVELAELAFGKVI-KLEPMN 350 (516)
Q Consensus 313 -~-------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~ 350 (516)
. .+....+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 1 1345555556666666666666666666654 444543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.1e-06 Score=68.73 Aligned_cols=107 Identities=18% Similarity=0.063 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGA 326 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 326 (516)
...+..+...+...|++++|...|.+..+.. +.+...|..+...|.+.|++++|...+++.. ..| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456666677777778888887777777541 2256777888888888888888888888775 345 58888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCccchHHH
Q 043362 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357 (516)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 357 (516)
+...|++++|...++++++++|++...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999988755443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-06 Score=68.18 Aligned_cols=104 Identities=12% Similarity=-0.035 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACK 328 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 328 (516)
.+..+...+...|++++|...|..+... -+.+...|..+...|.+.|++++|...|++.. ..| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556667777777777777777653 12256667777777888888888888887765 334 4677778888888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
..|++++|...+++++++.|+++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 8899999999999998888877654433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-06 Score=66.97 Aligned_cols=95 Identities=6% Similarity=-0.011 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc-------chH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG-------YYV 355 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~ 355 (516)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..+++++++.|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456678888889999999999998876 445 5888889999999999999999999999998876643 566
Q ss_pred HHhhHHHHcCChhHHHHHHHHHHh
Q 043362 356 LLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 778888899999999999988754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.3e-06 Score=66.87 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
+...+..+...+...|++++|.+.|++.. ..|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 56788888999999999999999999876 5576 678888889999999999999999999999999999999999
Q ss_pred hHHHHcCChhHHHHHHHHHHhC
Q 043362 359 NIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=9.1e-06 Score=64.78 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
+...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999876 334 6888999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 043362 362 SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 362 ~~~g~~~~a~~~~~~m~~~ 380 (516)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00037 Score=65.43 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC-HHHHHHHH
Q 043362 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGH-GEVAVQLF 237 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 237 (516)
++++..+++.++... +.+..+|+.-...+.+.| .++++.++++++. .+|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666653 445666666555666666 3677777777665 3466677766666666676 47777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-----
Q 043362 238 DEMLKSGIRPDGTAFVSVLSACSHA--------------GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA----- 298 (516)
Q Consensus 238 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 298 (516)
.++.+.. +-|...|+.....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 7777653 23455555444333332 3456667776666643 122455555544444444
Q ss_pred ------CCHHHHHHHHHhcC-CCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 299 ------GQLNEALELIESML-VEPDGAVWGALLG-----ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 299 ------g~~~~A~~~~~~m~-~~p~~~~~~~ll~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
+.++++++.++++. ..||. .|..+.. +....+..++....+.++.+++|.....|..+..-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 34667777776665 45653 2332211 11235666777778888888887766555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=65.08 Aligned_cols=100 Identities=9% Similarity=-0.117 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHH
Q 043362 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLG 325 (516)
Q Consensus 248 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~ 325 (516)
+...+..+...+...|++++|...|...... .+.+...+..+...|...|++++|...+++.. ..| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666777777777777777776653 12245667777777777777777777777665 334 4777778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=78.83 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...|..+..+|.+.|++++|...+++.. ..| +...|..+..+|...|++++|+..|+++++++|++..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888899999999999999998876 344 68889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHH-HHHHHHh
Q 043362 363 EARNLDGIMR-VRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~-~~~~m~~ 379 (516)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988774 4555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=66.84 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 467777888888888899999999888888888888888888889999999999888888765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=80.73 Aligned_cols=114 Identities=13% Similarity=-0.020 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+++..+. -+.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555544431 122444444455555555555555555554432 111344444555555555555555
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043362 305 LELIESML-VEP-DGAVWGALLGA--CKIHKNVELAELAFG 341 (516)
Q Consensus 305 ~~~~~~m~-~~p-~~~~~~~ll~~--~~~~g~~~~A~~~~~ 341 (516)
.+.+++.. ..| +...+..+..+ +...|++++|+..++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554443 122 12223333322 444455555555555
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=61.50 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHHHHHHHH
Q 043362 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP---DGAVWGALLGA 326 (516)
Q Consensus 251 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~ 326 (516)
.+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++.. ..| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4444555556666666666666666543 12245556666666777777777777766654 223 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHhhcCCCCc
Q 043362 327 CKIH-KNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 327 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+... |++++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7778 888888888888887777653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-05 Score=73.50 Aligned_cols=113 Identities=9% Similarity=-0.045 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-C---------------HhHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--K-T---------------VVSWTAIIGG 223 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~---------------~~~~~~li~~ 223 (516)
+++++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+ | + ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444433321 22467888999999999999999999987642 2 2 2455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555432 2234444444445555555555555554444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=66.73 Aligned_cols=62 Identities=10% Similarity=-0.086 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCCccch----HHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKL-------EPMNTGYY----VLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 88888888 8888999999999999988888765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=64.29 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------ccchH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-------TGYYV 355 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 355 (516)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|...++++.+..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456677777888888888888888765 233 57778888888888999999999999998887765 67788
Q ss_pred HHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 356 LLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999988763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-05 Score=77.60 Aligned_cols=162 Identities=8% Similarity=-0.081 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCC-CHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDG----TAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQP-GPEH 287 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~ 287 (516)
+..+...|...|++++|.+.+.++... +..++. .+.+.+-..+...|+.+++..++....... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555555555555555554331 001111 112222223344566666666665554321 1112 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC----cc
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLE---PMN----TG 352 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~ 352 (516)
+..|...|...|++++|..++++.. .+|. ..++..++..|...|++++|...++++.... ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5666777777777777777666543 1121 4556666677777777777777777766543 211 12
Q ss_pred chHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 353 YYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 353 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666777777776665553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=9.5e-06 Score=64.92 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ccchHHHhhHHH
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEPD-G---AVWGALLGACKIHKNVELAELAFGKVIKLEPMN---TGYYVLLSNIYS 362 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 362 (516)
+...+...|++++|...|++.. ..|+ . ..+..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444555555666555555543 1222 1 345555555666666666666666666666655 444566666666
Q ss_pred HcCChhHHHHHHHHHHh
Q 043362 363 EARNLDGIMRVRMMMRE 379 (516)
Q Consensus 363 ~~g~~~~a~~~~~~m~~ 379 (516)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.4e-06 Score=71.47 Aligned_cols=147 Identities=11% Similarity=0.031 Sum_probs=82.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCH----------------
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTV---------------- 214 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~---------------- 214 (516)
........|.++.+.+.+....... ......+..+...|.+.|++++|.+.|++... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444556677777777665433321 12345677888999999999999999987642 222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVD 293 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 293 (516)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 556666666667777777777777666642 234555566666666666666666666666543 22 3444555555
Q ss_pred HHHhcCCHHHHH
Q 043362 294 LLGRAGQLNEAL 305 (516)
Q Consensus 294 ~~~~~g~~~~A~ 305 (516)
.+...++.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.2e-05 Score=60.86 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=53.4
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-C----CCC----HHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V----EPD----GAVWGAL 323 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~p~----~~~~~~l 323 (516)
..+...+...|++++|...+...... .+.+...+..+...|...|++++|...+++.. . .++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33344444444444444444444432 11233444445555555555555555554443 1 111 4556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 324 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
...+...|++++|...++++.+..| ++.....+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 6667777777777777777777666 34444444333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00061 Score=63.90 Aligned_cols=179 Identities=11% Similarity=0.087 Sum_probs=131.1
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHHHHHHH
Q 043362 199 LKKARAIFDGMP---RKTVVSWTAIIGGYGIHGH--GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL-TDKGLEYF 272 (516)
Q Consensus 199 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 272 (516)
++++.++++.+. .++..+|+.-...+...|+ +++++.++.++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 466777776654 4578899988888888884 899999999999864 4467777777777777887 58999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc------
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDLLGRA--------------GQLNEALELIESML-VEP-DGAVWGALLGACKIH------ 330 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~------ 330 (516)
..+.+. . +-|...|+.....+.+. +.++++++.+++.. ..| |...|+-+-..+...
T Consensus 169 ~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH-C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999975 2 33666777666666554 45888999988876 445 688887666555544
Q ss_pred -----CCHHHHHHHHHHHhhcCCCCccchHHHhhHH---HHcCChhHHHHHHHHHHhC
Q 043362 331 -----KNVELAELAFGKVIKLEPMNTGYYVLLSNIY---SEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 331 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 380 (516)
+.++++++.+++++++.|++.-.+..++... ...|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4588999999999999999854444333322 2356777888888888753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0002 Score=70.47 Aligned_cols=57 Identities=7% Similarity=0.032 Sum_probs=33.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043362 120 ISGYAQNGLATHVLELYREMKSLGVCPDA----------------VTFVGVLSSCAHLGAHSVGLEVEQQIQA 176 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 176 (516)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567788888888888887765321110 1244555556666666666666555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-05 Score=60.34 Aligned_cols=59 Identities=7% Similarity=-0.084 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+.+..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555555555555555555554431 1233444445555555555555555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.9e-05 Score=60.12 Aligned_cols=99 Identities=12% Similarity=-0.006 Sum_probs=59.7
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHH
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNEALELIESML-VEPD----GAVWGALLGACK 328 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~ 328 (516)
+...+...|++++|...|..+.+...-.+. ...+..+...|.+.|++++|...+++.. ..|+ ...+..+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334455556666666666665543111110 1355556666666777777776666654 2232 455666777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 329 IHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
..|++++|...++++++..|+++..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHH
Confidence 7888888888888888877776533
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=76.04 Aligned_cols=147 Identities=13% Similarity=-0.056 Sum_probs=80.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777777888888888888887763 344331 22333333333222 1 136778888
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH-HHcCChhHH
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY-SEARNLDGI 370 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 370 (516)
.|.+.|++++|...+++.. ..| +...|..+..+|...|++++|+..|+++++++|++..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988875 345 5888889999999999999999999999999999888888887774 445667777
Q ss_pred HHHHHHHHhC
Q 043362 371 MRVRMMMRER 380 (516)
Q Consensus 371 ~~~~~~m~~~ 380 (516)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7888777643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-05 Score=63.57 Aligned_cols=92 Identities=18% Similarity=0.082 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCccc
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLEP------MNTGY 353 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~ 353 (516)
+..+...|...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++.++..+ .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3344444444455554444444432 0011 33445555566666666666666666654321 11335
Q ss_pred hHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 354 YVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 354 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+..++.+|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66677777777777777777776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.2e-06 Score=66.06 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
..|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555555555555555544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-05 Score=64.55 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----HH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-PD----GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----PE 286 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 286 (516)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554431100 11 124455555666666666666666665432111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML----VEPD----GAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
.+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++..++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566667777777777777766553 0111 3456667777888888888888888877643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.1e-05 Score=75.73 Aligned_cols=124 Identities=13% Similarity=-0.005 Sum_probs=98.8
Q ss_pred HHhccCChHHHHHHHHHhHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHH
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYG--LQP----GPEHYTCMVDLLGRAGQLNEALELIESML---------VEPD-GAVWG 321 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~ 321 (516)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|..++++.. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999888775432 122 24578899999999999999999888764 3354 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCccc---hHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 322 ALLGACKIHKNVELAELAFGKVIK-----LEPMNTGY---YVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 322 ~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
.|...|...|++++|+.+++++++ ++|+++.+ ...+..++...+++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 56777654 4567788889999999999999998743
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.5e-05 Score=73.62 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVD 293 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 293 (516)
..|..+...+.+.|++++|+..|++..+. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 34666666777777777777777766542 00000 000011100 0112 4567888899
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHH
Q 043362 294 LLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371 (516)
Q Consensus 294 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 371 (516)
.|.+.|++++|.+.+++.. ..| +...|..+..+|...|++++|+..+++++++.|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 445 58889999999999999999999999999999999989999999998888877765
Q ss_pred HH
Q 043362 372 RV 373 (516)
Q Consensus 372 ~~ 373 (516)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=65.37 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-C-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML-V-------EPD-GAVW----GALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~-~-------~p~-~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 353 (516)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66666677777777777776666554 4 776 6788 899999999999999999999999999988766
Q ss_pred hHHHh
Q 043362 354 YVLLS 358 (516)
Q Consensus 354 ~~~l~ 358 (516)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 55443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-05 Score=61.28 Aligned_cols=96 Identities=8% Similarity=-0.125 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 12 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+...
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445556666667777777777777766652 3345555556666666666666666666666654 3445555666666
Q ss_pred HHHcCCHHHHHHHHcccC
Q 043362 92 YVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~ 109 (516)
|.+.|++++|...|++..
T Consensus 95 ~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 666666666666665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.7e-05 Score=62.50 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCChHHHHHHHHHhHHhcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043362 262 AGLTDKGLEYFYGMKNKYGL-QP-GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAE 337 (516)
Q Consensus 262 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~ 337 (516)
.|++++|...|++..+. +. .| +...+..+...|...|++++|.+.|++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666777666632 10 12 34566777777778888888888777765 334 4777777888888888888888
Q ss_pred HHHHHHhhcCCCCccc
Q 043362 338 LAFGKVIKLEPMNTGY 353 (516)
Q Consensus 338 ~~~~~~~~~~p~~~~~ 353 (516)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.1e-05 Score=64.17 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc-cchHHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT-GYYVLL 357 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l 357 (516)
+...|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++++++|+++ .....+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34677888888999999999999988876 445 588899999999999999999999999999999876 333333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=4e-05 Score=73.11 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888899999999999999987642211111 1223344444433221 13677788889999
Q ss_pred CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHH-HHhcCCHHHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGA-CKIHKNVELAELA 339 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~-~~~~g~~~~A~~~ 339 (516)
|++++|...+.+..+. -+.+...|..+..+|...|++++|...|++.. ..|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998864 12367788899999999999999999999886 4564 4555555544 3445677888889
Q ss_pred HHHHhhcCCCCc
Q 043362 340 FGKVIKLEPMNT 351 (516)
Q Consensus 340 ~~~~~~~~p~~~ 351 (516)
++++.+..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999998888664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.3e-05 Score=59.72 Aligned_cols=92 Identities=10% Similarity=-0.036 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------ccchH
Q 043362 284 GPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN------TGYYV 355 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 355 (516)
+...+..+...+.+.|++++|.+.+++.. ..| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667778888888999999999888775 344 68888889999999999999999999999999988 66677
Q ss_pred HHhhHHHHcCChhHHHHHHH
Q 043362 356 LLSNIYSEARNLDGIMRVRM 375 (516)
Q Consensus 356 ~l~~~~~~~g~~~~a~~~~~ 375 (516)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777766655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.84 E-value=9.2e-05 Score=54.73 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHH
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 362 (516)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++.+.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566777788888888888888888765 334 57788888888999999999999999999999988888888888776
Q ss_pred HcC
Q 043362 363 EAR 365 (516)
Q Consensus 363 ~~g 365 (516)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00071 Score=69.07 Aligned_cols=167 Identities=8% Similarity=-0.017 Sum_probs=123.2
Q ss_pred HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C
Q 043362 200 KKARAIFDGMP---RKTVVSWTAIIGGYGIHGH----------GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG--L 264 (516)
Q Consensus 200 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 264 (516)
++|.+.++.+. ..+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 45555555544 2244566665555555555 788888888888753 335667777777777888 6
Q ss_pred hHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc-----------
Q 043362 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG-QLNEALELIESML-VEP-DGAVWGALLGACKIH----------- 330 (516)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~----------- 330 (516)
++++.+.++++.+.. +-+...|+.-...+.+.| .++++.+.++++. ..| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 688999998888651 235667777777777888 8899999988887 445 678888777666552
Q ss_pred ---CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhH
Q 043362 331 ---KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369 (516)
Q Consensus 331 ---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 369 (516)
+.++++.+.+.+++..+|++..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999998888555
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=71.97 Aligned_cols=96 Identities=9% Similarity=-0.098 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 285 PEHYTCMVDLLGRAGQLNEALELIESML-VEPD----------------GAVWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
...+..+...|.+.|++++|...|++.. ..|+ ...|..+..+|.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455666677777777777777777654 2232 5788899999999999999999999999999
Q ss_pred CCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 348 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|++..+|..++.+|...|++++|...+++..+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=55.48 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5778888889999999999999999999999999999999999999999999999999988764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00021 Score=71.26 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-C
Q 043362 184 FLNNALINMYARCGNLKKARAIFDGMPR----------K-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-----SGI-R 246 (516)
Q Consensus 184 ~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~ 246 (516)
.+++.|..+|...|++++|..++++..+ | ...+++.|...|...|++++|+.++++..+ .|. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555554444321 1 123455566666666666666666655442 121 1
Q ss_pred CCH-HHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 247 PDG-TAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 247 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
|+. .+...+-.++...+.+++|+.++.++++.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23344455666677777777777777653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00024 Score=55.37 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=56.0
Q ss_pred HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 304 ALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 304 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
|.+.|++.. ..| +...|..+...+...|++++|+..++++++.+|++..++..++.+|...|++++|...++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444433 234 4677777777788888888888888888888888777888888888888888888888877754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00051 Score=66.21 Aligned_cols=118 Identities=8% Similarity=-0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCC----------------C---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPE----------------K---GLITWNAMISGYAQNGLATHVLELYREMKSLGV 144 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~----------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 144 (516)
.+..+...|.+.|++++|.+.|++..+ . +..+|+.+..+|.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 456677777788888888877776543 1 13456666666777777777777777666542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHH
Q 043362 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203 (516)
Q Consensus 145 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 203 (516)
+.+...+..+..++...|++++|...++++.+.. +.+...+..+..++.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2245566666666666677777776666666653 234555555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=7.1e-05 Score=61.59 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCccchHHHhhHHHHc
Q 043362 297 RAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN----------VELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 364 (516)
+.+++++|.+.++... ..| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455666666666654 344 46666666666665554 56999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhCC
Q 043362 365 R-----------NLDGIMRVRMMMRERR 381 (516)
Q Consensus 365 g-----------~~~~a~~~~~~m~~~~ 381 (516)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.2e-05 Score=57.41 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=68.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC------hhH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD------FSV 84 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~ 84 (516)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45667778888888888888888888887763 4456677777777888888888888888877654 222 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 85 GNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 85 ~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
+..+...+...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5556666666666666666665554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0017 Score=52.53 Aligned_cols=111 Identities=14% Similarity=-0.001 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNE 303 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 303 (516)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35677777777777765 33333 555566666677777777776653 245566666666665 566666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcC
Q 043362 304 ALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLE 347 (516)
Q Consensus 304 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~ 347 (516)
|.+.|++.....+...+..|...|.. .+|.++|...+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655433445555555555555 556666666666555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00088 Score=49.97 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCC
Q 043362 315 PDGAVWGALLGACKIHKN---VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 382 (516)
++...+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...++.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467777777777654444 69999999999999999999999999999999999999999999987644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00077 Score=66.15 Aligned_cols=116 Identities=9% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---cc
Q 043362 292 VDLLGRAGQLNEALELIESML------VEPD----GAVWGALLGACKIHKNVELAELAFGKVIK-----LEPMNT---GY 353 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~------~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~ 353 (516)
+..+.+.|++++|..++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888887653 2222 56788888999999999999999998876 345544 45
Q ss_pred hHHHhhHHHHcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 043362 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425 (516)
Q Consensus 354 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 425 (516)
+..|+.+|...|++++|..++++..+.-.. .. ...||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------TH-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hc-CCCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999887652110 01 2469999999888888777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00067 Score=52.75 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=49.5
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 268 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
+...|+...+. -+.+...+..+...|...|++++|...+++.. ..| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555431 12245566666666667777777777666654 233 466667777777777777777777777776
Q ss_pred cCCC
Q 043362 346 LEPM 349 (516)
Q Consensus 346 ~~p~ 349 (516)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00023 Score=58.58 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCCc
Q 043362 301 LNEALELIESML-VEP-DGAVWGALLGACKIH-----------KNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 351 (516)
+++|+..|++.. ..| +..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 346666666654 445 366677777776655 589999999999999999875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0075 Score=48.65 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 043362 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAEL 338 (516)
Q Consensus 263 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~ 338 (516)
+++++|..+|.+..+. + .|+.. |..+|...+.+++|.+.|++.....+...+..|...|.. .+|.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678888888888764 4 33332 777777778888899888887644677888888888877 788999999
Q ss_pred HHHHHhhcCCCCccchHHHhhHHHH----cCChhHHHHHHHHHHhCCC
Q 043362 339 AFGKVIKLEPMNTGYYVLLSNIYSE----ARNLDGIMRVRMMMRERRL 382 (516)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 382 (516)
.+++..+. .++.++..|+.+|.. .++.++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988876 356678888888888 7889999999988887765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0016 Score=47.78 Aligned_cols=83 Identities=13% Similarity=-0.008 Sum_probs=59.2
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
+...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677777788888888888888888887653 3355667777777778888888888888877765 445566666666
Q ss_pred HHHHc
Q 043362 91 MYVKC 95 (516)
Q Consensus 91 ~~~~~ 95 (516)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.013 Score=55.29 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=75.5
Q ss_pred CCHhHHHHHHHHHH--hcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC-ChHHH---HHHHHHhHH
Q 043362 212 KTVVSWTAIIGGYG--IHGH---GEVAVQLFDEMLKSGIRPD-GTAFVSVLSACSH----AG-LTDKG---LEYFYGMKN 277 (516)
Q Consensus 212 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~g-~~~~a---~~~~~~~~~ 277 (516)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+ ...+..+..++.. .+ ..... ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36777777776643 2333 47889999998884 565 3444443333321 00 00111 111111110
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 278 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
....+.++..|..+...+...|++++|...++++. ..|+...|..+...+...|++++|...++++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 00123355666666555555677777777776665 446666665566666667777777777777777776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0023 Score=62.63 Aligned_cols=92 Identities=14% Similarity=0.028 Sum_probs=66.4
Q ss_pred ccCChHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYG--LQPG----PEHYTCMVDLLGRAGQLNEALELIESML---------VEPD-GAVWGALL 324 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll 324 (516)
+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45778888888877665321 2222 4567888888888888888888887764 2344 56788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----cCCCCcc
Q 043362 325 GACKIHKNVELAELAFGKVIK-----LEPMNTG 352 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~ 352 (516)
..|...|++++|+.+++++++ ++|+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888999999888888876 4576653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.012 Score=59.87 Aligned_cols=171 Identities=9% Similarity=-0.010 Sum_probs=115.4
Q ss_pred CCchHHHHHHHHhHHCCCCCC-hhhHHHHHHHhhcCCC----------chHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 043362 26 SLVSEAVSLFGKMREQGVEIN-SVTMLCLLPICVDPGY----------LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94 (516)
Q Consensus 26 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 94 (516)
...++|++.++.+... .|+ ...|+.--.++...++ ++++...++.+++.. +.+..+|+.-...+.+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456778888888876 344 3445554444444444 778888888888776 6677788887777888
Q ss_pred cC--CHHHHHHHHcccCCCC---chHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 043362 95 CG--SVDYGRKLFDQVPEKG---LITWNAMISGYAQNG-LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL------- 161 (516)
Q Consensus 95 ~g--~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------- 161 (516)
.| +++++.+.++++.+.| ..+|+--.....+.| .++++++.+.++.+.. +-|...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 88 6688888888876544 467777777777777 7788888888877653 33566676666665553
Q ss_pred -------CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHH
Q 043362 162 -------GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201 (516)
Q Consensus 162 -------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 201 (516)
+.++++.+.+..++... +.|...|+-+-..+.+.+..++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44577777777777654 4466677777666666665433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0038 Score=61.20 Aligned_cols=101 Identities=12% Similarity=-0.058 Sum_probs=76.1
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HH
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYG--LQPG----PEHYTCMVDLLGRAGQLNEALELIESML---------VEPD-GA 318 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~ 318 (516)
.+..+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34456677888999888888775321 2222 4568888889999999999998888764 3344 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCccchH
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIK-----LEPMNTGYYV 355 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 355 (516)
+++.|...|...|++++|+.+++++++ ++|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788899999999999999999999876 5687764433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0012 Score=64.64 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHhcC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---cchHHHh
Q 043362 297 RAGQLNEALELIESML---------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIK-----LEPMNT---GYYVLLS 358 (516)
Q Consensus 297 ~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~ 358 (516)
..|++++|..++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ .++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578889888887653 2243 57889999999999999999999999986 345554 4588899
Q ss_pred hHHHHcCChhHHHHHHHHHHh
Q 043362 359 NIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.027 Score=60.14 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHcCCHHHHHH-HHcccC-CCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043362 93 VKCGSVDYGRK-LFDQVP-EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170 (516)
Q Consensus 93 ~~~g~~~~A~~-~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 170 (516)
...+++++|.+ ++..++ .. ....++..+.+.|.+++|+++.+. |+ .-.......|+++.|.++
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHH
Confidence 34566777666 554443 21 125555556666666666654321 10 001223344555555554
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
.+.+ .+...|..|..++.+.|+++.|.+.|.+
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3221 2344555555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0035 Score=47.28 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=36.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666665542 22344555566666666666666666665553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.005 Score=46.02 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccch
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 354 (516)
....+.+.|++++|...+++.. ..| +.. .|..+...+...|++++|+..++++++++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3456677888888888887765 345 466 788888888888889999999998888888877655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.077 Score=56.57 Aligned_cols=153 Identities=12% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHhCCCchHHHH-HHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 043362 21 GYVLNSLVSEAVS-LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99 (516)
Q Consensus 21 ~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 99 (516)
.....+++++|.+ ++..+ |+......++..+...|..+.|.++.+ +. ..-......+|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHH
Confidence 3445778888876 44221 112223566666777788777776542 21 12244566789999
Q ss_pred HHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043362 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179 (516)
Q Consensus 100 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 179 (516)
+|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....|.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999987774 347899999999999999999999988743 33444555556777666665555555441
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 180 GSNPFLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 180 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
++.-..+|.+.|++++|.++|.+
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344456666777777665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0044 Score=46.34 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCcc-chHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 323 LLGACKIHKNVELAELAFGKVIKLEPMNTG-YYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 323 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
....+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445677899999999999999999999998 99999999999999999999999987643
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=47.49 Aligned_cols=65 Identities=5% Similarity=-0.038 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 315 PDGAVWGALLGACKIHK---NVELAELAFGKVIKLE-P-MNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
++..+.-.+..++.+.+ +.++++.+++++.+.+ | ++...++.|+-+|.+.|++++|.++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45666666666666665 5557777777777766 5 3456677777777777777777777777754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.16 Score=39.80 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=93.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 304 (516)
.-.|..++..++..+.... .+..-++-++.-....-+=+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456677777777776653 23344454554444444445555555555432222 245666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 305 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
...+-.+. .+....+.-+......|.-+.-.++...++...|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66655553 355556666777888899999999988877667777888999999999999999999999999998874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.076 Score=50.06 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=28.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 043362 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444443444455555555555444432 444444444444444455555555444444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.03 Score=41.44 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 282 QPGPEHYTCMVDLLGRAGQ---LNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 282 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
+.++..+..+..++...++ .++|..++++.. ..| ++..+..+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3467777777777765544 688888888776 455 47777777888889999999999999999988873
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.019 Score=51.90 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCC-ccchHHHhhHHHHc-CChhH
Q 043362 301 LNEALELIESML-VEPD---GAVWGALLGACKI-----HKNVELAELAFGKVIKLEPMN-TGYYVLLSNIYSEA-RNLDG 369 (516)
Q Consensus 301 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 369 (516)
..+|...+++.. ..|+ ...|..|...|.. .|+.++|.+.|++++++.|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 445666666554 5565 5678888888877 489999999999999999964 88888999988884 88999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 043362 370 IMRVRMMMRERRLKKDP 386 (516)
Q Consensus 370 a~~~~~~m~~~~~~~~~ 386 (516)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999988876554333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.38 Score=39.96 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=79.0
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043362 90 TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169 (516)
Q Consensus 90 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 169 (516)
+....+|+++.|.++.+.+ .+...|..|.....++|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888887766 3456788888888888888888888877642 3444445556677666665
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240 (516)
Q Consensus 170 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (516)
+-+.....| -++.-...+.-.|+++++.++|.+..+.... +.....+|..+.|.++.+++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 555555544 1333444455568888887777655432111 11112355566666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.059 Score=43.68 Aligned_cols=69 Identities=17% Similarity=0.041 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHhcC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 283 PGPEHYTCMVDLLGRAG---QLNEALELIESML-VE-P--DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 283 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
++..+.-.+.-++++.+ +++++..+++... .. | ....+-.|.-+|.+.|++++|.+.++.+++.+|++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45555555566666655 4446666665544 22 3 244555667778999999999999999999999886
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.013 Score=56.72 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=119.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 11 LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 11 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
....|..|..+..+.+++.+|++.|-+ .-|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 345677777777777777777766532 234455667777777777777777766655544 334444567777
Q ss_pred HHHHcCCHHHHHHH----------------------------HcccC------------------------CCCchHHHH
Q 043362 91 MYVKCGSVDYGRKL----------------------------FDQVP------------------------EKGLITWNA 118 (516)
Q Consensus 91 ~~~~~g~~~~A~~~----------------------------f~~~~------------------------~~~~~~~~~ 118 (516)
+|+|.+++.+-.++ |..+. ..++.||-.
T Consensus 125 ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 125 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp HHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 77777765543332 22221 112345555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCC
Q 043362 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198 (516)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 198 (516)
.-.+|...+++.-|.-.--.+.- .||. ...++..|...|.+++-+.+++..... -.....+++-|.-.|+|- +
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-C
Confidence 55556555555554333222221 1111 122333445555566555555554422 124566778888888875 3
Q ss_pred HHHHHHHHhcCC----CC-------CHhHHHHHHHHHHhcCCHHHHHH
Q 043362 199 LKKARAIFDGMP----RK-------TVVSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 199 ~~~A~~~~~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 235 (516)
.++..+.++..- -| ....|.-++-.|.+..+++.|..
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 444444444322 12 44578889988988888887653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.049 Score=41.22 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML---------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
.-+-.|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...++++.++.|++..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334445555555555555555554432 01346777888888899999999999999999999988655333
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=2.6 Score=43.01 Aligned_cols=314 Identities=7% Similarity=-0.049 Sum_probs=158.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHH
Q 043362 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYV 93 (516)
Q Consensus 15 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~ 93 (516)
|.....+ .+.|++..+..+...+....+.| -..|..+...+.. .... ++-..+.+.. .+.....-+.-+..+.
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l~~-~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDLMN-QPAV---TVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTGGG-CCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCccc-CCHH---HHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 3333433 45678887777766664332211 1234444333221 1222 4444444432 2222345566677788
Q ss_pred HcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH--HHHHH
Q 043362 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVE 171 (516)
Q Consensus 94 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~ 171 (516)
+.+++.....++.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.+.. ..+-+
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 89999999998877 43445445556677888899888887777765554 2233445556666665554322 22222
Q ss_pred HHHHHcC-----------CCCch-HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCCHHHHHHH
Q 043362 172 QQIQANG-----------FGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVV---SWTAIIGGYGIHGHGEVAVQL 236 (516)
Q Consensus 172 ~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~ 236 (516)
..+...| ++++. .....++..+.+-..+ ....... .++.. ....-+.-+++ .+.+.|..+
T Consensus 162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~ 236 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLM 236 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence 2222221 11111 1122233222222222 1121111 11111 11112222333 367888888
Q ss_pred HHHHHHcCCCCCHHHH----HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 237 FDEMLKSGIRPDGTAF----VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 237 ~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
|....... ..+.... ..+.......+...++...+...... .++.....-.+..-.+.|+++.|...|+.|+
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 88876543 2233222 22333334445355666666655432 2333334444444556788999999898887
Q ss_pred CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043362 313 VEP-D-GAVWGALLGACKIHKNVELAELAFGKVIK 345 (516)
Q Consensus 313 ~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 345 (516)
..+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 322 2 22112244566778888888888888875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.28 Score=40.78 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=70.9
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 043362 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270 (516)
Q Consensus 191 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 270 (516)
+...++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345567777777766655 3556777777777777777777777766432 2233334444566555444
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043362 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343 (516)
Q Consensus 271 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 343 (516)
+-+....+ | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43333322 1 12333444555677777777776654212111 1123356667777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.18 Score=45.68 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHcccCCCCc--hHHHHHHHH-HHHc--CC------hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 043362 95 CGSVDYGRKLFDQVPEKGL--ITWNAMISG-YAQN--GL------ATHVLELYREMKSLGVCPD---AVTFVGVLSSCAH 160 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~ 160 (516)
.|+..+-.+.+.+....++ ..|..++.+ +... |+ ...|..++++..+. .|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 4454555556666655454 356655543 3332 32 34555555555552 444 3455666666665
Q ss_pred c-----CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC-CCHHHHHHHHhcC
Q 043362 161 L-----GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC-GNLKKARAIFDGM 209 (516)
Q Consensus 161 ~-----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m 209 (516)
. |+.++|++.|++.++.+..-+..++....+.++.. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 66666666666666654322345555555555553 5555555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.63 E-value=6.1e-06 Score=79.15 Aligned_cols=198 Identities=9% Similarity=0.054 Sum_probs=110.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043362 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160 (516)
Q Consensus 81 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 160 (516)
.+.+|..|..++.+.|.+.+|.+-|-+ ..|...|...|.+..+.|.+++-+..+.-.++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 345677777777777777777665533 3455566777777778888887777666555442223 333467777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC------------------------CCHhH
Q 043362 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR------------------------KTVVS 216 (516)
Q Consensus 161 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~~~~~ 216 (516)
.+++.+-.+++ -.||..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77765543333 124554555667777777777777777766542 14445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ-PGPEHYTCMVDLL 295 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~ 295 (516)
|-.+-.+|...+.+.-|.-.--.+. +.|| .+..++..|...|.+++-+.+++.-. |++ .....++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 5555555555555544433222222 1111 11234444555555555555555443 222 2344555555555
Q ss_pred Hh
Q 043362 296 GR 297 (516)
Q Consensus 296 ~~ 297 (516)
++
T Consensus 274 sK 275 (624)
T 3lvg_A 274 SK 275 (624)
T ss_dssp HS
T ss_pred Hh
Confidence 54
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.26 Score=38.39 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
-++.+.|+++.|.+.++.+++.+|+|.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 344445555555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.25 Score=37.15 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYG-----LQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD 316 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 316 (516)
+..+...+.+.|+++.|..+|+...+... -.+....+..|..+|.+.|++++|..++++.. ..|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34455555555555555555555544321 11234556666666666666666666666654 4443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.2 Score=52.18 Aligned_cols=54 Identities=11% Similarity=-0.074 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.-+...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999998873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.42 E-value=1.2 Score=34.61 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH---HHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHH
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK---GLEYFYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLN 302 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 302 (516)
.....+.+-|.+....|. |+..+-..+..++.+...... ++.++..+.+. + .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555655555443 666666667777777766555 77777777643 1 13 2233344566777888888
Q ss_pred HHHHHHHhcC-CCCC
Q 043362 303 EALELIESML-VEPD 316 (516)
Q Consensus 303 ~A~~~~~~m~-~~p~ 316 (516)
+|.+.++.+. .+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 8888877765 4563
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.82 Score=36.63 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=58.6
Q ss_pred CCCCCCcccHHHHHHHHHhCCCc------hHHHHHHHHhHHCCCCCChhh----HHHHHHH---hhcCCCchHHHHHHHH
Q 043362 6 IKSTHLTVCYNALISGYVLNSLV------SEAVSLFGKMREQGVEINSVT----MLCLLPI---CVDPGYLWLGMCCHCI 72 (516)
Q Consensus 6 m~~~~~~~~~n~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~t----~~~ll~~---~~~~~~~~~a~~~~~~ 72 (516)
|. ..|..+|-..+...-++|++ ++..++|++.... ++|+... |..+.-- +...++.+.|+++|+.
T Consensus 8 ~~-p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MM-ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eC-CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44 56888999999888888999 8888888888764 5665311 2111111 1122566677777766
Q ss_pred HHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 043362 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107 (516)
Q Consensus 73 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~ 107 (516)
+++.. +.=..+|......-.+.|++..|.+++.+
T Consensus 86 a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 86 ARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 66552 11144555555555555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.14 E-value=4.7 Score=31.91 Aligned_cols=47 Identities=11% Similarity=-0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhcCCC-CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 333 VELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..+++.+++.+....|. .......|+-+|.+.|++++|.++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555566666555552 333445566666666666666666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=4.7 Score=31.67 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.|..++..++..+.... .+..-++-++--....-+-+-..++++.+-+. .| ...||++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 45555556665555442 23333444443333333333334444333221 11 1245555555555
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 043362 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281 (516)
Q Consensus 206 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 281 (516)
|-.+.. +....+..+..+...|+-++-.+++.++.. +.+|++..+..+..||.+.|+..++.+++.++-++ |+
T Consensus 84 ~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 84 GVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 544432 333445567777888888888888888544 25777888888888888888888888888888765 54
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.00 E-value=8.6 Score=41.00 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=71.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH--HHHhCCCHHHHHHHHhcCCC-CCH-hHHH---HHHHHHHhcCCH
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN--MYARCGNLKKARAIFDGMPR-KTV-VSWT---AIIGGYGIHGHG 230 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~m~~-~~~-~~~~---~li~~~~~~g~~ 230 (516)
+...|+-+....++..+.+.. +..+...+.- ++.-.|+.+.+..+.+.+.. .|. +-|. ++..+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345566666666666555432 2222222222 23345665555555544431 222 2222 233455666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL-NEALELIE 309 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 309 (516)
....+++..+... ...+......+.-+....|+.+.+.+++..+.+. -.|.+..-.++.-+....|.. .+|.+++.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 5555577666653 1122222222222333455555555555544431 233333333333333334332 45666666
Q ss_pred hcCCCCCHHHH
Q 043362 310 SMLVEPDGAVW 320 (516)
Q Consensus 310 ~m~~~p~~~~~ 320 (516)
.+...+|..+-
T Consensus 654 ~L~~D~d~~Vr 664 (963)
T 4ady_A 654 PLTKDPVDFVR 664 (963)
T ss_dssp HHHTCSSHHHH
T ss_pred HHccCCCHHHH
Confidence 66544554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.89 E-value=0.48 Score=37.95 Aligned_cols=51 Identities=10% Similarity=-0.102 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 331 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
+|+++|.++|+.++.+...-+..|...+..-.+.|+.+.|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566666666666665533334445555555566777777777777666543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.06 E-value=14 Score=34.13 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=100.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhcc
Q 043362 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF----DEMLKSGIRPDGTAFVSVLSACSHA 262 (516)
Q Consensus 187 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 262 (516)
.++..=|.+.+++++|.+++.. -...+.++|+...|-++- +-..+.++++|..+...|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445558888999999887542 234456677776665554 4455678888888877777777655
Q ss_pred CChH-HHHHHHHHhHH---hcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043362 263 GLTD-KGLEYFYGMKN---KYG--LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336 (516)
Q Consensus 263 g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A 336 (516)
..-+ .=..+.+.+.+ +.| ..-|+.....+...|.+.+++.+|...|-.- ..+.+..+..++.-+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg-~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG-TKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc-CCchHHHHHHHHHHHHHhcC----
Confidence 4311 11222222221 113 2336777888999999999999999888432 23334666555554444332
Q ss_pred HHHHHHHhhcCCCCccch-HHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 337 ELAFGKVIKLEPMNTGYY-VLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 337 ~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
|.....| ...+--|.-.++...|..+++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222 2334446777889999887776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=0.86 Score=43.70 Aligned_cols=67 Identities=9% Similarity=0.017 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh-----CCCCCCCc
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-----RRLKKDPG 387 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 387 (516)
..++.++...|+.+++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33455566677777777777777777777777777777777777777777777776643 36665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.30 E-value=3.5 Score=33.63 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 043362 290 CMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 290 ~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
-+...|.+.|+.++|+.+++.++
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35555666666666666666665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.89 E-value=6.4 Score=28.82 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++|..+-+.+...+- ...+--.=+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46677777777766653 33333333445677899999999999999999999988755 467888888888878777
Q ss_pred cCCCCCHHHHH
Q 043362 243 SGIRPDGTAFV 253 (516)
Q Consensus 243 ~g~~p~~~t~~ 253 (516)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.40 E-value=6.9 Score=28.68 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043362 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242 (516)
Q Consensus 163 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (516)
..++|..+-+.+...+- ...+--.=+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46677777777766653 33333333445677899999999999999999999988765 366777788777777766
Q ss_pred cCCCCCHHHH
Q 043362 243 SGIRPDGTAF 252 (516)
Q Consensus 243 ~g~~p~~~t~ 252 (516)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.37 E-value=3.2 Score=30.53 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556777777887888899999999999999999999999999999987543 334567776653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.77 E-value=3.5 Score=32.18 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCCC-CccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 334 ELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
.+++.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555444442 23344455555555555555555555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.42 E-value=12 Score=41.53 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043362 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165 (516)
Q Consensus 86 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 165 (516)
..++..+.+.+..+.|.++....+. +...-..+..+|...|++++|.+.|.+.- .|+..+..... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hhc
Confidence 3455666677777777776655544 33333456677888888888888887642 12221111000 000
Q ss_pred HHHHHHHHHHHc-C-CCCchHHHHHHHHHHHhCCCHHHHHHHHh----cCCCCCH----hHHHHHHHHHHhcCCHHHHHH
Q 043362 166 VGLEVEQQIQAN-G-FGSNPFLNNALINMYARCGNLKKARAIFD----GMPRKTV----VSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 166 ~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~m~~~~~----~~~~~li~~~~~~g~~~~A~~ 235 (516)
. +..+... . ...-..-|.-++..+.+.|.++.+.++-. .....+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0011110 0 11122345556666666666665554432 2222221 258888899999999999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 267 (516)
.+-.+.....+ ...+..|+...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88887765433 4456667776676666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.30 E-value=20 Score=32.82 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL----YREMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
.+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.++++|.....-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777788899999998876442 2334556665555443 444555677888777777776665
Q ss_pred hcCChH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc---CC
Q 043362 160 HLGAHS-VGLEVEQQIQ----ANG--FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH---GH 229 (516)
Q Consensus 160 ~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 229 (516)
....-+ .=.++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432111 1123333333 332 2236778888999999999999999888633322455555555444443 43
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 043362 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 278 (516)
..++- ...-.+++ -|...|+...|..++....+.
T Consensus 184 ~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33321 11111222 244567888888888776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.25 E-value=21 Score=32.99 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q 043362 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY----REMKSLGVCPDAVTFVGVLSSCA 159 (516)
Q Consensus 84 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 159 (516)
.+.++..-|.+.+++++|.+++..- ...+.+.|+..-|-++- +...+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999875432 23345556655444433 44445667777777666666665
Q ss_pred hcCChH-HHHHHHHHHH----HcC--CCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043362 160 HLGAHS-VGLEVEQQIQ----ANG--FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232 (516)
Q Consensus 160 ~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 232 (516)
....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|---.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 444311 1122333332 323 234577788899999999999999998853222223555555544444332111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 233 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
++.+.-.+++ -|...+++..|..++....+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34456788888877766554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.00 E-value=32 Score=38.09 Aligned_cols=142 Identities=12% Similarity=0.024 Sum_probs=84.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---------------------
Q 043362 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--------------------- 212 (516)
Q Consensus 154 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------------------- 212 (516)
++..+...+..+.+.++... .+.+....-.+..+|..+|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555554332 2234333345667788889999999998776311
Q ss_pred -----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 043362 213 -----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG----TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283 (516)
Q Consensus 213 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 283 (516)
-..-|..++..|.+.|.++.+.++-+...+...+-+. ..|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 0012556677777788888877777665553211111 14566777888888888887777666532 22
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 043362 284 GPEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~ 303 (516)
-......||..++..|++++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 34455666666666655443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=7.7 Score=36.98 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCCHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN----KYGLQPGPEHY 288 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 288 (516)
...++..+...|++++|+..++.+... -+.+...+..++.++...|+..+|.+.|+...+ ..|+.|++.+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566677778888888777777664 245677788888888888888888887777543 34777876653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.92 E-value=26 Score=36.51 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=36.4
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 258 ACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 258 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
-|...|+++.|+.+-++... ..| +-.+|..|...|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556777777777777764 244 45677777777777777777777777775
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.62 E-value=24 Score=34.18 Aligned_cols=187 Identities=8% Similarity=0.005 Sum_probs=120.4
Q ss_pred cCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchHH--HHHHHHHHHhCC
Q 043362 126 NGLATHVLELYREMKS-----LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFL--NNALINMYARCG 197 (516)
Q Consensus 126 ~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~y~~~g 197 (516)
.|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|..+...+ .+.+++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3788999988876654 23444566788899999999999998887776655 333222211 122333333333
Q ss_pred C--HHHHHHHHhcCCC---C-------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHh
Q 043362 198 N--LKKARAIFDGMPR---K-------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIRPD---GTAFVSVLSACS 260 (516)
Q Consensus 198 ~--~~~A~~~~~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~ 260 (516)
. .+.-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2233334443321 1 1123456778899999999999999998753 22222 235666778899
Q ss_pred ccCChHHHHHHHHHhHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043362 261 HAGLTDKGLEYFYGMKNKY-GLQPG----PEHYTCMVDLLGRAGQLNEALELIESML 312 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 312 (516)
..+++..|..++.++.... ...++ ...|.+++..+...+++.+|...|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999875321 12222 2456788888888999999888776653
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.25 E-value=10 Score=27.76 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||++.|-+|-. .+.|...++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667666666666552 33333334455678999999999999999999999987754 57788888888887887
Q ss_pred HCCCCCCHHHHHH
Q 043362 141 SLGVCPDAVTFVG 153 (516)
Q Consensus 141 ~~g~~p~~~t~~~ 153 (516)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 765 455555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.10 E-value=25 Score=32.12 Aligned_cols=180 Identities=12% Similarity=0.038 Sum_probs=108.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHH-
Q 043362 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL- 236 (516)
Q Consensus 158 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~- 236 (516)
....|++-+|.+.+ .++..=|.+.+++++|.+++.. -...+.++|+...|-++
T Consensus 23 ~I~~G~yYEAhQ~~---------------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL---------------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHTCHHHHHHHH---------------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HhhccChHHHHHHH---------------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34456666665554 4455558888999999887543 23445677887766664
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHhHH---hcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043362 237 ---FDEMLKSGIRPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKN---KYG--LQPGPEHYTCMVDLLGRAGQLNEALEL 307 (516)
Q Consensus 237 ---~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 307 (516)
.+-..+.+++++......++..+..-..-+ .=.++.+.+.+ +.| ..-++.....+...|.+.|++.+|...
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444556788888888777777665532111 11222333321 112 223778888999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHH
Q 043362 308 IESMLVEPDGAVWGALLGACKIH---KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378 (516)
Q Consensus 308 ~~~m~~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 378 (516)
|-... .-|...+..++.-+... |...++-...- ..+--|.-.|+...|..+++...
T Consensus 157 ~i~~~-~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 157 FMLGT-HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTSC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhCC-CccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 76321 11455666555554444 55444322222 22234556788889988888664
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.66 E-value=11 Score=27.65 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHH
Q 043362 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140 (516)
Q Consensus 61 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 140 (516)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||++.|-+|-. .+.|...++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667666666666552 33333334455678999999999999999999999987754 46777788877777777
Q ss_pred HCCCCCCHHHHHH
Q 043362 141 SLGVCPDAVTFVG 153 (516)
Q Consensus 141 ~~g~~p~~~t~~~ 153 (516)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.10 E-value=20 Score=31.90 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=70.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301 (516)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 301 (516)
....+.|..++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+...-..+...+.++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHH
Confidence 34556788888888877777652 445666667778888888888888888777643 45433222222222222111
Q ss_pred HHHHHHHHhc--C--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 302 NEALELIESM--L--VEPDGAVWGALLGAC--KIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 302 ~~A~~~~~~m--~--~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
. .++|..- + ......-...|+.+. ...|+.++|..+-.++.+.-|..+.
T Consensus 81 R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 81 R--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp H--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred H--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1 1233221 1 111222223344443 3468888888888888777665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.96 E-value=9 Score=28.21 Aligned_cols=60 Identities=5% Similarity=-0.087 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 30 EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 30 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
++.+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555566666666778888888888888888888888888887765432 333445665554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.17 E-value=6.6 Score=30.65 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
+.-+..+-++.+....+.|++....+.|.+|.+.+++..|.++|+.++.+. .+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 344666777777778899999999999999999999999999999998753 3445567777653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.00 E-value=9.2 Score=29.86 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
...+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33444556677778888888888888888888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 516 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 40/358 (11%), Positives = 99/358 (27%), Gaps = 17/358 (4%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEIN---SVTMLCLLPICVDPGYLWLGMCCHC 71
L S + + + ++ N + L + + G L + +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFS----TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
++ D N + + + + G L
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
+K++ P+ L + + + L N
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 192 MYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
+ +A A + V + Y G ++A+ + ++ ++P
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH 269
Query: 249 -GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
A+ ++ +A G + + + + + ++ G + EA+ L
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCY--NTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 308 IESML-VEPDGAVWGALLGACKIH-KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
L V P+ A + L + ++ A + + + I++ P Y + N E
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.04 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.69 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.43 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.26 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.47 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.04 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.42 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.4 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.6 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.9 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.84 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.03 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.76 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5e-21 Score=185.13 Aligned_cols=355 Identities=12% Similarity=0.036 Sum_probs=204.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 043362 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 18 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 97 (516)
+...+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4566788999999999999998763 3356778888889999999999999999999986 5677899999999999999
Q ss_pred HHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 98 VDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
+++|...+....+.+ ...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 999999998875432 2333333444444444444444444333322 122222333333344444445555444444
Q ss_pred HHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043362 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251 (516)
Q Consensus 175 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 251 (516)
.... +.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..|++....+ +.+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 4432 2234444555555555555555555554432 2234445555555555555555555555554432 223344
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 043362 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKI 329 (516)
Q Consensus 252 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~ 329 (516)
+..+...+...|++++|...|+++.+. -+-+...+..+...|...|++++|.+.++... .+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 444555555555555555555555432 11134445555555555555555555555443 22234455555555555
Q ss_pred cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.1e-19 Score=173.49 Aligned_cols=321 Identities=14% Similarity=0.117 Sum_probs=265.2
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChh
Q 043362 54 LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLAT 130 (516)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 130 (516)
...+.+.|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|++..+. +..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 344567799999999999999885 567889999999999999999999999987543 3578999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 043362 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210 (516)
Q Consensus 131 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 210 (516)
+|+..+....... +.+..............+....+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999998763 3444555555555666666666666666655544 3345555666777788888888888777654
Q ss_pred ---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHH
Q 043362 211 ---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287 (516)
Q Consensus 211 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 287 (516)
..+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+...... -..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 239 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--hhhHHHH
Confidence 3356788888999999999999999999988753 334667888999999999999999999998864 2346777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcC
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 365 (516)
+..+...+.+.|++++|.+.|++.. ..| +..+|..+...+...|++++|+..++.+....|.+...+..++.+|...|
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 8889999999999999999999875 456 58889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 043362 366 NLDGIMRVRMMMRER 380 (516)
Q Consensus 366 ~~~~a~~~~~~m~~~ 380 (516)
++++|.+.+++..+.
T Consensus 320 ~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEV 334 (388)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-13 Score=129.91 Aligned_cols=242 Identities=14% Similarity=0.038 Sum_probs=172.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhC
Q 043362 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196 (516)
Q Consensus 117 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 196 (516)
--....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...+.++++.. +.+...+..+...|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345667888888888888888888753 3346678888888888888888888888887764 34566777777778888
Q ss_pred CCHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043362 197 GNLKKARAIFDGMPRKTV---VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273 (516)
Q Consensus 197 g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 273 (516)
|++++|.+.++.....+. ..+........ ..+.......+..+...+...++...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 888887777765432111 00000000000 0000001111222333455677778887
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 274 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
...+...-.++...+..+...+...|++++|...+++.. ..| +..+|..+...+...|++++|+..++++++++|+++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 776553344567788888899999999999999998875 445 588899999999999999999999999999999999
Q ss_pred cchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 352 GYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=9.1e-14 Score=130.52 Aligned_cols=249 Identities=12% Similarity=0.031 Sum_probs=184.3
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCC---chHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043362 87 CLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163 (516)
Q Consensus 87 ~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 163 (516)
.....|.+.|++++|...|+++.+.+ ..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 35667889999999999999986543 5789999999999999999999999988753 3356788888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043362 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243 (516)
Q Consensus 164 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (516)
+++|.+.+..+...... ............. ..+.......+..+...+.+.+|.+.|.+....
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999875321 1111100000000 001111111223344556678888888887764
Q ss_pred CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHH
Q 043362 244 GI-RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVW 320 (516)
Q Consensus 244 g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~ 320 (516)
.. .++...+..+...+...|++++|...++..... .+-+...|..+...|.+.|++++|.+.|++.. ..| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 32 345677888888999999999999999998864 12357788999999999999999999999876 456 58889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 321 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
..+..+|...|++++|+..|++++++.|++...+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 99999999999999999999999999887765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.1e-09 Score=99.58 Aligned_cols=259 Identities=12% Similarity=-0.027 Sum_probs=156.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC---CchHHHHHHHH
Q 043362 121 SGYAQNGLATHVLELYREMKSLGVCPD----AVTFVGVLSSCAHLGAHSVGLEVEQQIQANG--FG---SNPFLNNALIN 191 (516)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~ 191 (516)
..+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+.. .. .....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555666666666665554311101 1234444455556666666666665554421 00 11233444555
Q ss_pred HHHhCCCHHHHHHHHhcCC-------CC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHH
Q 043362 192 MYARCGNLKKARAIFDGMP-------RK----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI----RPDGTAFVSVL 256 (516)
Q Consensus 192 ~y~~~g~~~~A~~~~~~m~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll 256 (516)
.|...|++..|...+.... .+ ....+..+...+...|+++.+...+........ .....++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 6666666666666554431 11 112444556667777888888877777665321 12234455555
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-----CHHHHHHHHH
Q 043362 257 SACSHAGLTDKGLEYFYGMKNKYGLQPG-----PEHYTCMVDLLGRAGQLNEALELIESML-VEP-----DGAVWGALLG 325 (516)
Q Consensus 257 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-----~~~~~~~ll~ 325 (516)
..+...+....+...+........-..+ ...+..+...+...|++++|...++... ..| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6667777888777777665543221111 2345556677788899999998888765 111 2455666778
Q ss_pred HHHhcCCHHHHHHHHHHHhh------cCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 326 ACKIHKNVELAELAFGKVIK------LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
.+...|++++|...+++++. ..|....++..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999888864 2355556788889999999999999998887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1e-08 Score=94.74 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=146.6
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CC-HhHHHHHHHHHHhcCCHHHHHHHH
Q 043362 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KT-VVSWTAIIGGYGIHGHGEVAVQLF 237 (516)
Q Consensus 162 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~-~~~~~~li~~~~~~g~~~~A~~~~ 237 (516)
+..+++..++++.++...+.+...+..++..+.+.|+++.|..+|+++.. .+ ...|...+....+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888999888765566777888889999999999999999987643 23 347889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC----
Q 043362 238 DEMLKSGIRPDGTAFVSVLS-ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---- 312 (516)
Q Consensus 238 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 312 (516)
+++.+.+. .+...|..... -+...|+.+.|..+|+.+.+. .+.++..|...++.+.+.|+++.|..+|++..
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99887643 23334433333 334568899999999999875 34467889999999999999999999999864
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 043362 313 VEP--DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351 (516)
Q Consensus 313 ~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 351 (516)
..| ....|...+..-..+|+.+.+..+.+++.+..|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 223 256888888888899999999999999988887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.1e-09 Score=98.28 Aligned_cols=220 Identities=10% Similarity=-0.062 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 043362 129 ATHVLELYREMKSLGV-CP--DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205 (516)
Q Consensus 129 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 205 (516)
.+.++.-+++...... .+ ...++..+..++.+.|++++|...|++.++.. +.++.+++.+..+|.+.|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544311 11 12345555666777777777777777777653 34566777777777777777777777
Q ss_pred HhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 043362 206 FDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282 (516)
Q Consensus 206 ~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 282 (516)
|++.. ..+..+|..+..+|...|++++|...|++..+.. +.+......+..++...+..+....+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 77664 2245677777777888888888888888877643 223333333334444445444444444444321 2
Q ss_pred CCHHHHHHHHHHHHhcCC----HHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccch
Q 043362 283 PGPEHYTCMVDLLGRAGQ----LNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354 (516)
Q Consensus 283 p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 354 (516)
++...+. ++..+..... .+.+...+.... ..|+ ..+|..+...+...|++++|...|++++..+|++...|
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222 2222221111 222222222111 1232 45677788889999999999999999999999875444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.9e-08 Score=93.99 Aligned_cols=233 Identities=11% Similarity=-0.007 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCc---
Q 043362 115 TWNAMISGYAQNGLATHVLELYREMKSL----GVCPD-AVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSN--- 182 (516)
Q Consensus 115 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~~~--- 182 (516)
+++.+...|...|++++|+..|++..+. +..+. ..++..+...+...|++..+...+..... .+....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 3444445555555555555555544321 10011 12233344445555566665555554433 111111
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----
Q 043362 183 PFLNNALINMYARCGNLKKARAIFDGMPR--------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIRPD---- 248 (516)
Q Consensus 183 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---- 248 (516)
...+..+...|...|+++.+...+..... ....++..+...+...++..++...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 12344455666666666666666554321 12234444555666677777777776655431 11111
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC-HH
Q 043362 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLNEALELIESML-------VEPD-GA 318 (516)
Q Consensus 249 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~ 318 (516)
...+..+...+...|+++.|...+........-.+ ....+..+...|...|++++|...+++.. ..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 12344555567778888888888877653211111 23345567778888888888888887653 2232 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 043362 319 VWGALLGACKIHKNVELAELAFGKVIKLE 347 (516)
Q Consensus 319 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 347 (516)
++..+...|...|++++|...+++++++.
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 67777788888999999999998887754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=5.6e-10 Score=104.70 Aligned_cols=230 Identities=9% Similarity=-0.086 Sum_probs=166.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHhCCCHH
Q 043362 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG--AHSVGLEVEQQIQANGFGSNPFLN-NALINMYARCGNLK 200 (516)
Q Consensus 124 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~ 200 (516)
...|.+++|+..++...+.. +-+...|..+..++...+ +++++...+..+.+... ++...+ ..+...+...|.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccH
Confidence 44556778888888887652 335556666666666655 47888888888888643 344444 44557777889999
Q ss_pred HHHHHHhcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 201 KARAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 201 ~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
+|...++...+. +..+|+.+...+.+.|++++|...+++.... .|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999887743 6778888889999999888876666554432 2221 1233334555666777777777764
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 278 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
. -+++...+..+...+...|+.++|...+.+.. ..| +..+|..+...+...|+.++|...++++++++|++...|.
T Consensus 237 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 G--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp S--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred h--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 3 33455566677778888899999999998876 445 3677888889999999999999999999999998887888
Q ss_pred HHhhHHH
Q 043362 356 LLSNIYS 362 (516)
Q Consensus 356 ~l~~~~~ 362 (516)
.|...+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7766665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.3e-08 Score=92.46 Aligned_cols=198 Identities=11% Similarity=0.139 Sum_probs=105.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCC-CHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHH
Q 043362 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG-NLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQ 235 (516)
Q Consensus 160 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 235 (516)
+.+..++|.++++.+++.. |.+..+|+....++...| ++++|.+.++... ..+..+|+.+...+.+.|++++|++
T Consensus 55 ~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 3333344444444444332 223334444444444433 2444444444432 2244555555555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCC------HHHHHHHH
Q 043362 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGRAGQ------LNEALELI 308 (516)
Q Consensus 236 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~ 308 (516)
.++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+. .| +...|+.+...+.+.+. +++|.+.+
T Consensus 134 ~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 134 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 666665532 224555666666666666666666666666643 23 34455555544444443 56677666
Q ss_pred HhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc--chHHHhhHHHH
Q 043362 309 ESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG--YYVLLSNIYSE 363 (516)
Q Consensus 309 ~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~ 363 (516)
.+.. ..| +...|..+...+... ..+++...+++..++.|+... .+..++.+|..
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 6554 345 577777776655443 457777888888877765433 34455666644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.7e-08 Score=91.95 Aligned_cols=179 Identities=8% Similarity=-0.056 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCC-CchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043362 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91 (516)
Q Consensus 13 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 91 (516)
..|+-+-..+.+.+.+++|+.+++++++.. +-+...|+....++...+ ++++|...++.+++.. +.+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345666667777788888888888887763 333445666666666655 4788888888877775 5567777777788
Q ss_pred HHHcCCHHHHHHHHcccCCC---CchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 043362 92 YVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA----- 163 (516)
Q Consensus 92 ~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----- 163 (516)
+.+.|++++|...|+++.+. +..+|+.+...+.+.|++++|++.|+++.+.. +-+...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 88888888888887776543 35677777777888888888888888777753 2345566655555554443
Q ss_pred -hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043362 164 -HSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195 (516)
Q Consensus 164 -~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 195 (516)
+++|...+..+++.. +.+...|+.+...+..
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD 232 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh
Confidence 456666666666653 3355555555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=7.6e-08 Score=88.63 Aligned_cols=182 Identities=11% Similarity=0.050 Sum_probs=143.4
Q ss_pred CCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 043362 197 GNLKKARAIFDGMP----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272 (516)
Q Consensus 197 g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 272 (516)
+..++|..+|++.. ..+...|...+..+.+.|+.++|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888887643 34677899999999999999999999999987533333557889999999999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 043362 273 YGMKNKYGLQPGPEHYTCMVDL-LGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349 (516)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 349 (516)
.++.+. .+.+...|...... +...|+.+.|..+|+.+. ...+...|...+......|+.+.|..+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999853 22344555554444 344689999999999886 3336889999999999999999999999999987765
Q ss_pred Ccc----chHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 350 NTG----YYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 350 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 433 5667777778889999999999988653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=8.8e-09 Score=92.27 Aligned_cols=213 Identities=13% Similarity=0.013 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHcCC-CC--chHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 165 SVGLEVEQQIQANGF-GS--NPFLNNALINMYARCGNLKKARAIFDGMP---RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 165 ~~a~~~~~~~~~~g~-~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
+.+..-++++..... .+ ...++..+..+|.+.|++++|.+.|++.. ..++.+|+.+..+|.+.|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 444555556655321 11 23467778899999999999999999875 3578899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH
Q 043362 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDG 317 (516)
Q Consensus 239 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 317 (516)
+..+.. +-+..++..+..++...|++++|...|+...+. . +.+......+...+.+.+..+.+..+..... ..++.
T Consensus 96 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 96 SVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 999853 234667888999999999999999999999865 1 2244444444455555565555544444332 22222
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCC
Q 043362 318 AVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381 (516)
Q Consensus 318 ~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 381 (516)
..++. +..+.. .+..+.+...+.......|....+|..++..|...|++++|.+.++......
T Consensus 173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 173 WGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp THHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222 222221 2223444444444444556666788899999999999999999999987643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=4.6e-09 Score=98.31 Aligned_cols=253 Identities=7% Similarity=-0.085 Sum_probs=179.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH---HH-------HHhcCChHHHHHHHHHHHHcCCCCchHHH
Q 043362 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAV-TFVGVL---SS-------CAHLGAHSVGLEVEQQIQANGFGSNPFLN 186 (516)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll---~~-------~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 186 (516)
.++......+..++|++++.+..+. .|+.. .|+..- .. +...|.+++|...++.+.+.. +.+...|
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3333333334457888888888764 46543 333222 22 233455788899999988864 4567777
Q ss_pred HHHHHHHHhCC--CHHHHHHHHhcCC---CCCHhHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 187 NALINMYARCG--NLKKARAIFDGMP---RKTVVSWTA-IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 187 ~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
..+..++...+ ++++|...++++. .++...|.. ....+...+.+++|+..+++..... +-+...|..+..++.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 77777777665 4889999888864 345666654 4467777899999999999888753 335677888888888
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VE-PDGAVWGALLGACKIHKNVELAEL 338 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~A~~ 338 (516)
..|++++|...+...... .| .. ..+...+...+..+++...+.... .. ++...+..+...+...++.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~--~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LL--KE-LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HH--HH-HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HH--HH-HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 999888876666555432 11 11 223344555667777777666553 23 345566667777888899999999
Q ss_pred HHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 339 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+.+..+.+|.+..++..++.+|...|++++|.+.++...+.
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.4e-06 Score=73.62 Aligned_cols=141 Identities=11% Similarity=-0.048 Sum_probs=97.5
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 043362 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269 (516)
Q Consensus 190 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 269 (516)
...+...|+++.|.+.|+++.+++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778899999999998888888888888889999999999999999888753 335667888888888888988888
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 043362 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 270 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 348 (516)
..|++.... ..++... .|...| ...+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887642 1111100 000000 001111 23455566677778888888888888877776
Q ss_pred CC
Q 043362 349 MN 350 (516)
Q Consensus 349 ~~ 350 (516)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 54
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=2.2e-07 Score=79.36 Aligned_cols=115 Identities=9% Similarity=-0.137 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHH
Q 043362 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALL 324 (516)
Q Consensus 247 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll 324 (516)
|+...+......+.+.|++++|+..|.++... -+.++..|..+..+|.+.|++++|...|++.. ..| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 56666667777777777777777777777653 12356667777777777777777777777765 445 366777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
.+|...|++++|+..|++++++.|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777777777777777777776655555444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=8.7e-07 Score=68.22 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=65.7
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCH
Q 043362 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNV 333 (516)
Q Consensus 256 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~ 333 (516)
...+...|++++|...|....+. -+.+...|..+..+|...|++++|+..+++.. ..| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34555666677777766666643 12245566666667777777777777766655 233 466677777777777777
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
++|+..++++++.+|+++.++..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777766555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=5.7e-07 Score=76.63 Aligned_cols=88 Identities=6% Similarity=-0.074 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHh
Q 043362 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLLGR 297 (516)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 297 (516)
.....|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|.... .+.| +...|..+..+|.+
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHHHHHHHH
Confidence 33444445555555555555444431 2233444444445555555555555555444 2233 23444444555555
Q ss_pred cCCHHHHHHHHHh
Q 043362 298 AGQLNEALELIES 310 (516)
Q Consensus 298 ~g~~~~A~~~~~~ 310 (516)
.|++++|...|++
T Consensus 85 l~~~~~A~~~~~~ 97 (201)
T d2c2la1 85 MESYDEAIANLQR 97 (201)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5555555544444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=8e-07 Score=68.43 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=83.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChh
Q 043362 291 MVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 291 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 368 (516)
-...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 4667889999999999999986 445 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 043362 369 GIMRVRMMMRER 380 (516)
Q Consensus 369 ~a~~~~~~m~~~ 380 (516)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=4.2e-07 Score=69.48 Aligned_cols=89 Identities=17% Similarity=0.114 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCC
Q 043362 289 TCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366 (516)
Q Consensus 289 ~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 366 (516)
-.+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 345667888999999999999876 456 589999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 043362 367 LDGIMRVRMMM 377 (516)
Q Consensus 367 ~~~a~~~~~~m 377 (516)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=1.1e-05 Score=72.92 Aligned_cols=157 Identities=10% Similarity=0.038 Sum_probs=71.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCchHHHHHH
Q 043362 120 ISGYAQNGLATHVLELYREMKSL----GVCPD-AVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----G-FGSNPFLNNAL 189 (516)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~l 189 (516)
...|...|++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|...++...+. | ......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44555556666666665554331 11111 234555556666666666666666554431 1 00012233334
Q ss_pred HHHHHh-CCCHHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----H-HHHH
Q 043362 190 INMYAR-CGNLKKARAIFDGMPR-----K----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD-----G-TAFV 253 (516)
Q Consensus 190 i~~y~~-~g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~ 253 (516)
...|.. .|++++|.+.|++..+ . -..++..+...|...|++++|+..|++......... . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444422 3555555555543321 0 112344555556666666666666665554221110 0 1122
Q ss_pred HHHHHHhccCChHHHHHHHHHhH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMK 276 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~ 276 (516)
..+..+...|+++.|...+.+..
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 22333444555555555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=4.2e-06 Score=75.79 Aligned_cols=200 Identities=9% Similarity=-0.065 Sum_probs=125.7
Q ss_pred CchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHHcCCHHHH
Q 043362 27 LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF----GLDL-DFSVGNCLMTMYVKCGSVDYG 101 (516)
Q Consensus 27 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A 101 (516)
++++|.++|.+. ...|...+++++|.+.|..+.+. +-++ -..+++.+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 356677666553 34566677777777777776653 1111 134677778888888888888
Q ss_pred HHHHcccCC----CC-----chHHHHHHHHHHH-cCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHH
Q 043362 102 RKLFDQVPE----KG-----LITWNAMISGYAQ-NGLATHVLELYREMKS----LGVCPD-AVTFVGVLSSCAHLGAHSV 166 (516)
Q Consensus 102 ~~~f~~~~~----~~-----~~~~~~li~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~ 166 (516)
.+.+++..+ .+ ..++..+...|.. .|++++|++.|++..+ .+.++. ..++..+...+...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 877776432 11 2455666666644 5888888888877643 222221 2356677788888888888
Q ss_pred HHHHHHHHHHcCCCCch------HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH--------hHHHHHHHHHHh--cCCH
Q 043362 167 GLEVEQQIQANGFGSNP------FLNNALINMYARCGNLKKARAIFDGMPRKTV--------VSWTAIIGGYGI--HGHG 230 (516)
Q Consensus 167 a~~~~~~~~~~g~~~~~------~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~--~g~~ 230 (516)
|...++++......... ..+..++..+...|+++.|.+.|++..+.++ .....++.++-. .+.+
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~ 256 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence 88888888774322111 2234455567778888888888888764332 234556666654 2457
Q ss_pred HHHHHHHHHHH
Q 043362 231 EVAVQLFDEML 241 (516)
Q Consensus 231 ~~A~~~~~~m~ 241 (516)
++|+..|+++.
T Consensus 257 ~eai~~y~~~~ 267 (290)
T d1qqea_ 257 SEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHHHHh
Confidence 78887776543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=4.4e-06 Score=68.08 Aligned_cols=117 Identities=8% Similarity=-0.011 Sum_probs=90.9
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043362 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKN 332 (516)
Q Consensus 255 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~ 332 (516)
....|.+.|++++|...|.++.+. -+-+...|..+...|...|++++|...|++.. ..| +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677888888888888888864 13367788888889999999999999998876 445 57889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHhhHHH--HcCChhHHHHH
Q 043362 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYS--EARNLDGIMRV 373 (516)
Q Consensus 333 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 373 (516)
+++|...++++.+++|+++..+..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998877776655533 33445555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.1e-05 Score=68.02 Aligned_cols=139 Identities=8% Similarity=-0.135 Sum_probs=86.3
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 168 (516)
...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3445667778888888877777777777777777888888888888887777643 334566777777777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043362 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245 (516)
Q Consensus 169 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 245 (516)
..|++.+..........+ ...|. ..+ ....++..+..+|.+.|++++|.+.|........
T Consensus 91 ~~~~kAl~~~~~n~~~~~-------~~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDY-------KILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTTTTCSEEEC-------GGGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCccCchHHH-------HHhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 777776653111000000 00000 000 0112444566677788888888888887776433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.7e-06 Score=69.42 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCCh
Q 043362 290 CMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367 (516)
Q Consensus 290 ~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 367 (516)
.....|.+.|++++|...|++.. ..| +...|..+...|...|++++|...|+++++++|++..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 44567889999999999999887 445 5899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 043362 368 DGIMRVRMMMRER 380 (516)
Q Consensus 368 ~~a~~~~~~m~~~ 380 (516)
++|...++.....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.00012 Score=64.77 Aligned_cols=146 Identities=16% Similarity=0.056 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cC
Q 043362 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC----SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AG 299 (516)
Q Consensus 228 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g 299 (516)
.+.+.|...+++..+.|..+ ....+...+ ........+...+..... ..+...+..|...|.. ..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCC
T ss_pred hhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccc
Confidence 45566666666666554221 111121111 223445566666655543 2355666666666664 34
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH----cCChhHHH
Q 043362 300 QLNEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE----ARNLDGIM 371 (516)
Q Consensus 300 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~ 371 (516)
+...+...++......+......|...+.. ..+.+.|+..|++..+.+ ++..+..|+.+|.+ ..+.++|.
T Consensus 161 ~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~ 238 (265)
T d1ouva_ 161 DLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAI 238 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred ccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHH
Confidence 566666666665433466666666655554 568999999999988875 45678888888876 34788999
Q ss_pred HHHHHHHhCCC
Q 043362 372 RVRMMMRERRL 382 (516)
Q Consensus 372 ~~~~~m~~~~~ 382 (516)
++|++..+.|.
T Consensus 239 ~~~~kAa~~g~ 249 (265)
T d1ouva_ 239 ENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCcC
Confidence 99998877664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.4e-05 Score=65.82 Aligned_cols=133 Identities=14% Similarity=0.033 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 043362 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295 (516)
Q Consensus 216 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 295 (516)
.+......+.+.|++++|+..|++....- |.. .+..+.-......+ ...+|+.+...|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 44455667777888888888888776531 100 00000000111111 123567788889
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHH
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 370 (516)
.+.|++++|...+++.. ..| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 456 6889999999999999999999999999999999998888888887666555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.3e-06 Score=65.19 Aligned_cols=104 Identities=17% Similarity=-0.027 Sum_probs=78.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhcC-CCCCH---HHHHHHHH
Q 043362 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ---LNEALELIESML-VEPDG---AVWGALLG 325 (516)
Q Consensus 253 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~-~~p~~---~~~~~ll~ 325 (516)
..+++.+...+++++|.+.|++.... -+.++.++..+..++.+.++ +++|..+++++. ..|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677777788888888888888864 23366777788888876554 456888888875 33432 36778889
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCccchHHHh
Q 043362 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358 (516)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 358 (516)
+|...|++++|+..|+++++++|++..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999999999999999999999876554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0024 Score=57.78 Aligned_cols=209 Identities=10% Similarity=-0.022 Sum_probs=93.3
Q ss_pred CChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHH
Q 043362 45 INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124 (516)
Q Consensus 45 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 124 (516)
||..-...+..-|.+.|.++.|..++..+. -|..++..|.+.++++.|.+++.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 444444455555666666666666655321 1344555566666666666665543 23446666666666
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 043362 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204 (516)
Q Consensus 125 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 204 (516)
+.....-| .+.......+......++..|...|.+++...+++..... -..+...++-|+.+|++.+ .++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH
Confidence 55544332 1222223334444555666666666666666666655432 1344555666666666654 233333
Q ss_pred HHhcCCCC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 043362 205 IFDGMPRK-----------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273 (516)
Q Consensus 205 ~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 273 (516)
.+...... ....|.-++-.|.+.|++++|..+.-+ ..++..-....+..+.+..+.+...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 33322111 111244445555555555555444322 12232223334444555555555554444
Q ss_pred HhH
Q 043362 274 GMK 276 (516)
Q Consensus 274 ~~~ 276 (516)
...
T Consensus 229 ~yL 231 (336)
T d1b89a_ 229 FYL 231 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=6.8e-05 Score=61.33 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
..|..+...|.+.|++++|+..++... ..| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356677888999999999999998876 345 688999999999999999999999999999999999888888877766
Q ss_pred cCChh-HHHHHHHHHH
Q 043362 364 ARNLD-GIMRVRMMMR 378 (516)
Q Consensus 364 ~g~~~-~a~~~~~~m~ 378 (516)
.+... ...+++..|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 66544 3445555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=3.9e-05 Score=62.99 Aligned_cols=63 Identities=10% Similarity=-0.113 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999999999999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.4e-05 Score=61.48 Aligned_cols=93 Identities=5% Similarity=-0.015 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC--ccchHHHhhH
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHK---NVELAELAFGKVIKLEPMN--TGYYVLLSNI 360 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~ 360 (516)
...+++.+...+++++|.+.|++.. ..| +..++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3567888889999999999999886 344 6888888888887644 5567999999999988754 3478899999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 043362 361 YSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 361 ~~~~g~~~~a~~~~~~m~~~ 380 (516)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=5.6e-05 Score=60.77 Aligned_cols=63 Identities=14% Similarity=-0.071 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777888888888888888888888888888888888888888888888888887653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.99 E-value=0.0042 Score=54.25 Aligned_cols=112 Identities=17% Similarity=0.033 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCH
Q 043362 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH----AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQL 301 (516)
Q Consensus 230 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~ 301 (516)
...+...+...... .+...+..+...+.. ..+...+..++....+. .+......|...|.. ..++
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccch
Confidence 44455555544442 233444444444442 34555555665555432 244444555555544 4567
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCC
Q 043362 302 NEALELIESMLVEPDGAVWGALLGACKI----HKNVELAELAFGKVIKLEP 348 (516)
Q Consensus 302 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 348 (516)
++|...|++....-++..+..|...|.. .++.++|...|+++.+.++
T Consensus 199 ~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7777777766533355566666665543 3467778888887776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=3.7e-05 Score=63.06 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 043362 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-GPEHYTCMVDLL 295 (516)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 295 (516)
+......+...|++++|+..|++..+. +............. .+.| ....|..+...|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence 444556677788888888888776541 00000000101000 1111 355677788889
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCCh
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 367 (516)
.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..|+++++++|++..++..+..+..+....
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 456 5889999999999999999999999999999999988777777666544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2e-05 Score=61.36 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc-------hHHHh
Q 043362 288 YTCMVDLLGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY-------YVLLS 358 (516)
Q Consensus 288 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~ 358 (516)
+..+...|.+.|++++|...|++.. ..| +..+|..+..+|...|++++|+..++++++++|++... |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456778889999999999998876 445 58889999999999999999999999999998877654 44566
Q ss_pred hHHHHcCChhHHHHHHHHHHh
Q 043362 359 NIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~m~~ 379 (516)
..+...+++++|.+.++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677778899999999887653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.95 E-value=2.2e-05 Score=59.40 Aligned_cols=92 Identities=9% Similarity=-0.105 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043362 14 CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93 (516)
Q Consensus 14 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 93 (516)
.+-.+...+.+.|++++|+..|++..... +-+..+|..+..++...+++++|...++.+++.. +.+..++..|...|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 33445556677777777777777777653 2345666777777777777777777777777765 556667777777777
Q ss_pred HcCCHHHHHHHHcc
Q 043362 94 KCGSVDYGRKLFDQ 107 (516)
Q Consensus 94 ~~g~~~~A~~~f~~ 107 (516)
..|++++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777777664
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=6.6e-05 Score=60.32 Aligned_cols=126 Identities=11% Similarity=-0.069 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 043362 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294 (516)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 294 (516)
..+......+.+.|++.+|+..|++....- |.. ....-......... ....+|..+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 456667778888899999998888877631 110 00000000000000 123467778889
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHH
Q 043362 295 LGRAGQLNEALELIESML-VEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361 (516)
Q Consensus 295 ~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 361 (516)
|.+.|++++|++.+++.. ..| +..+|..+..++...|++++|...|+++++++|++..+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999876 455 6899999999999999999999999999999999987766655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=5.3e-05 Score=62.05 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 316 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
....|..+..++.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45677788888999999999999999999999999999999999999999999999999998764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00037 Score=56.71 Aligned_cols=63 Identities=11% Similarity=-0.078 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 318 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
.+|..+..+|...|++++|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667788899999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=2.9e-06 Score=83.21 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhCCCHHHHHHHHhc
Q 043362 131 HVLELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP-FLNNALINMYARCGNLKKARAIFDG 208 (516)
Q Consensus 131 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~ 208 (516)
+|.+.|++..+ ++||. ..+..+..++...++++++ +++++... |+. ...+...... +. .+..+.+.++.
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~~-~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-NH-AFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-HH-HTHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-HH-HHHHHHHHHHH
Confidence 67778887766 34553 3455555666666666654 56665532 211 1111111111 10 12233444433
Q ss_pred CC----CCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 043362 209 MP----RKTVVSWTAIIGGY--GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282 (516)
Q Consensus 209 m~----~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 282 (516)
.. .++..-.......+ ...+.++.|+..+++.... .+++...+..+...+.+.|+.+.|...+...... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C
Confidence 22 11222111111111 1233344444444433322 1223445566666677777777777766655432 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhH
Q 043362 283 PGPEHYTCMVDLLGRAGQLNEALELIESML-VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360 (516)
Q Consensus 283 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 360 (516)
| ...+..+.+.+...|++++|...+++.. ..|+ ...|+.|...+...|+..+|...|.+.+...|+.+.++..|..+
T Consensus 151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1 2456667777777888888888777765 4454 67777787777778888888888888887777777777777766
Q ss_pred HHHcC
Q 043362 361 YSEAR 365 (516)
Q Consensus 361 ~~~~g 365 (516)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 65443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.0001 Score=60.83 Aligned_cols=120 Identities=8% Similarity=-0.014 Sum_probs=84.3
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 043362 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333 (516)
Q Consensus 254 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 333 (516)
.........|++++|.+.|.....-+ ++...- .+....-......-++. .....+..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~-----~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVLD-----DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTTG-----GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---cccccc-----cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 34456778899999999998887532 221100 00000001111111111 1245677888999999999
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHh-----CCCCCC
Q 043362 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE-----RRLKKD 385 (516)
Q Consensus 334 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 385 (516)
++|+..++++++.+|.+...|..++.+|.+.|++++|.+.|+...+ .|+.|.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999998854 466543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00046 Score=53.24 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----HHHHHHHH
Q 043362 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-----PEHYTCMV 292 (516)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li 292 (516)
..+...|.+.|++++|+..|++..+.+ +.+...+..+..+|.+.|++++|...+..+.+...-.+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666542 234555666666666666666666666665532100111 12344444
Q ss_pred HHHHhcCCHHHHHHHHHhc
Q 043362 293 DLLGRAGQLNEALELIESM 311 (516)
Q Consensus 293 ~~~~~~g~~~~A~~~~~~m 311 (516)
..+...+++++|.+.|++.
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=5.3e-06 Score=81.31 Aligned_cols=114 Identities=10% Similarity=-0.032 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043362 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260 (516)
Q Consensus 182 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 260 (516)
+...+..+...+.+.|+.++|...+.....++ ..++..+...+...|++++|...|++..+.. +-+..+|+.+...+.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILAS 197 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34455566666666677666665554433222 2345556666777777777777777766642 223466777777777
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 043362 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298 (516)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 298 (516)
..|+..+|...|.+... --+|-+..+..|...|.+.
T Consensus 198 ~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 77777777777777663 2345566666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=8.2e-05 Score=59.12 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=44.7
Q ss_pred HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChh
Q 043362 302 NEALELIESML-VEP-DGAVWGALLGACKIHK-----------NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368 (516)
Q Consensus 302 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 368 (516)
++|...|++.. ..| +..+|..+..+|...| +++.|...|+++++++|++...+..|... .
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence 44444444443 333 3455555555544332 46889999999999999987655555444 3
Q ss_pred HHHHHHHHHHhCCC
Q 043362 369 GIMRVRMMMRERRL 382 (516)
Q Consensus 369 ~a~~~~~~m~~~~~ 382 (516)
.|.+++.+..+.|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666665553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00051 Score=49.75 Aligned_cols=73 Identities=18% Similarity=0.061 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHH
Q 043362 286 EHYTCMVDLLGRAGQLNEALELIESML--------VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356 (516)
Q Consensus 286 ~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 356 (516)
..+-.+...+.+.|++++|...|++.. ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334456666777777777777766553 1223 5678889999999999999999999999999999877666
Q ss_pred Hh
Q 043362 357 LS 358 (516)
Q Consensus 357 l~ 358 (516)
+.
T Consensus 86 l~ 87 (95)
T d1tjca_ 86 LK 87 (95)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.32 E-value=9.2e-05 Score=58.80 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=60.1
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHH
Q 043362 296 GRAGQLNEALELIESML-VEP-DGAVWGALLGACKI----------HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363 (516)
Q Consensus 296 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 363 (516)
-+.+.+++|.+.|+... ..| +..++..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 34455666666666554 334 35555555554432 2456889999999999999999999999999987
Q ss_pred cCC-----------hhHHHHHHHHHHhC
Q 043362 364 ARN-----------LDGIMRVRMMMRER 380 (516)
Q Consensus 364 ~g~-----------~~~a~~~~~~m~~~ 380 (516)
.|+ +++|.+.|++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 764 57788888877653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.00057 Score=54.76 Aligned_cols=88 Identities=13% Similarity=-0.067 Sum_probs=61.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--------
Q 043362 292 VDLLGRAGQLNEALELIESML----VEPD----------GAVWGALLGACKIHKNVELAELAFGKVIKLEPM-------- 349 (516)
Q Consensus 292 i~~~~~~g~~~~A~~~~~~m~----~~p~----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-------- 349 (516)
...+.+.|++++|...|++.. ..|+ ...|+.+..+|...|++++|...+++.+++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 334445566666666665543 1111 356777888888888888888888888764321
Q ss_pred ---CccchHHHhhHHHHcCChhHHHHHHHHHHh
Q 043362 350 ---NTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379 (516)
Q Consensus 350 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 379 (516)
...++..++.+|...|++++|...+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567889999999999999999998765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.26 E-value=0.00054 Score=60.15 Aligned_cols=127 Identities=12% Similarity=-0.018 Sum_probs=86.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 043362 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG-PEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 225 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 303 (516)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45788999999999988863 446678888889999999999999999988854 554 3444445555544444444
Q ss_pred HHHHHHhcC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchH
Q 043362 304 ALELIESML--VEPD-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355 (516)
Q Consensus 304 A~~~~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 355 (516)
+..-..... ..|+ ...+......+...|+.++|...++++.+..|..+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 433222211 2232 333344456677889999999999999998888765544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.26 E-value=0.061 Score=48.18 Aligned_cols=212 Identities=9% Similarity=-0.026 Sum_probs=116.1
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 043362 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88 (516)
Q Consensus 9 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 88 (516)
.||..--..+..-|-+.|.++.|..+|..+.. |..++..+.+.++++.|.++... . .+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k---~---~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---A---NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH---H---TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH---c---CCHHHHHHH
Confidence 44555555567778889999999999987642 66777888888888887776543 2 356688888
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043362 89 MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168 (516)
Q Consensus 89 l~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 168 (516)
...+.+......|.-+ ......+......++..|-..|.+++...++...... -.++...++.++..+++.+. +
T Consensus 76 ~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~--- 149 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q--- 149 (336)
T ss_dssp HHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H---
T ss_pred HHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H---
Confidence 8888888777655332 2212223344567888899999999999998876543 24566677788888877542 2
Q ss_pred HHHHHHHHcCCCCchH----------HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043362 169 EVEQQIQANGFGSNPF----------LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238 (516)
Q Consensus 169 ~~~~~~~~~g~~~~~~----------~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 238 (516)
++.+.+...+-..|.. .|.-++-.|.+.|.+++|..+.-.=+ +++......+..+.+..+.+...++..
T Consensus 150 kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 150 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 3333443321111111 12344455555555555444322111 122223345556666666665555555
Q ss_pred HHHH
Q 043362 239 EMLK 242 (516)
Q Consensus 239 ~m~~ 242 (516)
...+
T Consensus 229 ~yL~ 232 (336)
T d1b89a_ 229 FYLE 232 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0037 Score=51.04 Aligned_cols=122 Identities=12% Similarity=0.117 Sum_probs=82.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCH
Q 043362 153 GVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230 (516)
Q Consensus 153 ~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 230 (516)
.........|++++|.+.+...+.. |...... ..+.+ +...-..+.......+..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~----------~~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL----------RDFQF--VEPFATALVEDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG----------TTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC----------cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3345677889999999999888874 2110000 00000 00001111112345677888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCCHHH
Q 043362 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN----KYGLQPGPEH 287 (516)
Q Consensus 231 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 287 (516)
++|+..++++.... +-+...+..++.++...|+.++|.+.|+++.+ ..|+.|+..+
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999998863 45778899999999999999999999988743 3588888765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.0023 Score=50.95 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 043362 287 HYTCMVDLLGRAGQLNEALELIESML--------VEPD-----GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350 (516)
Q Consensus 287 ~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 350 (516)
.|+.+..+|...|++++|.+.+++.. ..++ ...+..+..+|...|++++|+..|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45555566666666666655554432 1122 2346667788899999999999999998876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.87 E-value=0.00053 Score=60.20 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=23.2
Q ss_pred CCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 043362 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109 (516)
Q Consensus 60 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 109 (516)
.|++++|...++..++.. +.|...+..|...|+..|++++|.+.|+...
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444444443 3444444445555555555555544444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.0064 Score=43.58 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------ccchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMN-------TGYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 317 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
...+-.+...+.+.|+++.|+..|++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445567888999999999999999998875443 346788999999999999999999998764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.59 Score=43.52 Aligned_cols=119 Identities=8% Similarity=-0.122 Sum_probs=69.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHHcCC
Q 043362 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-DFSVGNCLMTMYVKCGS 97 (516)
Q Consensus 19 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~ 97 (516)
+.-..++|+..++..+...+.. .| ...|...-..-...++... .++...+.+..-.| ........+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~~~-~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQPA-VTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGCCH-HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccCCH-HHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 3445677888888888777743 23 3344433332222222222 23433343332111 11233445677888999
Q ss_pred HHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 043362 98 VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143 (516)
Q Consensus 98 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 143 (516)
++.....+..-+. ++..-.....+....|+..+|...+..+-..|
T Consensus 88 w~~~~~~~~~~p~-~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 88 WRGLLAFSPEKPG-TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHCCSCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 9888877765432 34444567778888999999988888776554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.42 E-value=0.61 Score=34.14 Aligned_cols=141 Identities=11% Similarity=0.046 Sum_probs=89.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043362 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303 (516)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 303 (516)
+...|..++..++..+.... .+..-|+-++.-....-+-+...+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34456777777777776653 233445555544444455555555555554433222 2344444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHHHhCCCC
Q 043362 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383 (516)
Q Consensus 304 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 383 (516)
....+-.+- .+....+.-+.....+|.-+.-..+++.+.+.+..++....-++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444443332 344445556677778888888888888877766666778888899999999999999999888888874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.40 E-value=0.25 Score=37.23 Aligned_cols=59 Identities=7% Similarity=-0.068 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043362 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194 (516)
Q Consensus 128 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 194 (516)
++++|++.|++..+.|.. . ....+. .....+.++|.+.+.+..+.| ++.....|..+|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence 455666666666555422 1 111111 122345556666666655554 2333344444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.60 E-value=0.82 Score=34.10 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 277 (516)
++++|+++|++..+.|.. . ....|. .....+.++|.+++.+..+
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~ 51 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACE 51 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhc
Confidence 466777777777666522 1 122221 2334456666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.77 E-value=1.7 Score=31.73 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043362 95 CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174 (516)
Q Consensus 95 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 174 (516)
|+++......|-.+. .+....+..+....++|.-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++
T Consensus 69 C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 69 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444333332 223445566777888888888888888876643 677778888888999999999998888888
Q ss_pred HHcCCC
Q 043362 175 QANGFG 180 (516)
Q Consensus 175 ~~~g~~ 180 (516)
-+.|+.
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 887753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=1.7 Score=31.71 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 043362 284 GPEHYTCMVDLLGRAG---QLNEALELIESML-VEP-D-GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352 (516)
Q Consensus 284 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 352 (516)
++.+--...-++.+.. +++++..++++.. ..| + ...+-.|.-+|.+.|+++.|...++++++++|++..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 3444334444455443 3456666666554 233 3 345666777788889999999999999999988763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.30 E-value=0.46 Score=34.94 Aligned_cols=66 Identities=8% Similarity=-0.147 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCc-cchHHHhhHHHHcCChhHHHHHHHHHHhC
Q 043362 315 PDGAVWGALLGACKIH---KNVELAELAFGKVIKLEPMNT-GYYVLLSNIYSEARNLDGIMRVRMMMRER 380 (516)
Q Consensus 315 p~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 380 (516)
|...+--....+..++ .+.++|+.+++++.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4554544445555443 456799999999998888664 57889999999999999999999999764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.84 E-value=8.4 Score=35.12 Aligned_cols=274 Identities=11% Similarity=-0.018 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCchHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 043362 82 FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH- 160 (516)
Q Consensus 82 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 160 (516)
...+-.-+......|+...|..+...++..........+..... ...+..... . ..++......+..+..+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASV 225 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhhhHHHHHHHHHH
Confidence 33333444555566777777777777665444444444443322 222222211 1 12233332233333322
Q ss_pred -cCChHHHHHHHHHHHHcCCCCchHHH---HHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCCHHHHH
Q 043362 161 -LGAHSVGLEVEQQIQANGFGSNPFLN---NALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAV 234 (516)
Q Consensus 161 -~g~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 234 (516)
..+.+.+..++............... ..+.......+..+.+...+.... ..+.....-.+......+++..+.
T Consensus 226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHH
Confidence 24566677666666553221111111 112222223455555555554332 112222222333344567777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HhcCC
Q 043362 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313 (516)
Q Consensus 235 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~ 313 (516)
..++.|... ..-...-.--+..++...|+.+.|..+|..+.. .++ -|.-|.. .+.|..- .+- ...+.
T Consensus 306 ~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~Lg~~~---~~~~~~~~~ 373 (450)
T d1qsaa1 306 TWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QRIGEEY---ELKIDKAPQ 373 (450)
T ss_dssp HHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HHTTCCC---CCCCCCCCS
T ss_pred HHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HHcCCCC---CCCcCCCCc
Confidence 777766432 111223334556677777888888877777652 122 2332221 1112100 000 00001
Q ss_pred CCC-HHHHH---HHHHHHHhcCCHHHHHHHHHHHhhcCCCCccchHHHhhHHHHcCChhHHHHHHHHH
Q 043362 314 EPD-GAVWG---ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377 (516)
Q Consensus 314 ~p~-~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 377 (516)
.++ ...-+ .-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+......
T Consensus 374 ~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 111 11111 12344556778888887777665432 2345566677777788888777666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.03 E-value=1.3 Score=30.66 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 043362 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293 (516)
Q Consensus 229 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 293 (516)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4557777777777788899999999999999999999999999999986533 34556766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.76 E-value=3.9 Score=28.13 Aligned_cols=61 Identities=5% Similarity=-0.103 Sum_probs=43.6
Q ss_pred hHHHHHHHHhHHCCCCCChhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043362 29 SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90 (516)
Q Consensus 29 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 90 (516)
-++.+-++.+......|++....+.|+||.+.+++..|.++++-+.... .++...|..+++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 3555666666667788888888888888888888888888888765442 334556665544
|